FB2019_05, released Oct 15, 2019

Gene: Dmel\CNBP

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General Information
Symbol
Dmel\CNBP
Species
D. melanogaster
Name
CCHC-type zinc finger nucleic acid binding protein
Annotation Symbol
CG3800
Feature Type
protein_coding_gene
FlyBase ID
FBgn0034802
Gene Model Status
Current
Stock Availability
11 publicly available
Gene Snapshot
In progress.Contributions welcome.
Other Summaries
Key Links
Genomic Location
Cytogenetic map
59B6-59B6
Sequence location
2R:22,934,569..22,937,077 [-]
Recombination map
2-101
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Protein Family (UniProt)
-
Protein Signatures (InterPro)
Molecular Function (GO)
[Detailed GO annotations]
Experimental Evidence
-
Predictions / Assertions
mRNA binding; single-stranded RNA binding; translation regulator activity; zinc ion binding
Summaries
Gene Model and Products
Number of Transcripts
2
Number of Unique Polypeptides
1

Please see the GBrowse view of Dmel\CNBP or the JBrowse view of Dmel\CNBP for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model
Gene model reviewed during 5.52
Gene model reviewed during 5.55
Sequence Ontology: Class of Gene
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
CNBP-RA
FBtr0071994
NM_137895
2509
165
CNBP-RB
FBtr0303464
NM_001202063
2068
165
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
CNBP-PA
FBpp0071903
17.6
165
8.71
NP_611739
AAN16117
CNBP-PB
FBpp0292516
17.6
165
8.71
NP_001188992
ADV37238
Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

165 aa isoforms: CNBP-PA, CNBP-PB
Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Nucleotide / Polypeptide Records
 
UniProt
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\CNBP using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Gene Ontology (6 terms)
Molecular Function (4 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (4 terms)
CV Term
Evidence
References
mRNA binding
inferred from biological aspect of ancestor with PANTHER:PTN000543537
(assigned by GO_Central )
(Gaudet et al., 2011)
single-stranded RNA binding
inferred from biological aspect of ancestor with PANTHER:PTN000543537
(assigned by GO_Central )
(Gaudet et al., 2011)
translation regulator activity
inferred from biological aspect of ancestor with PANTHER:PTN000543537
(assigned by GO_Central )
(Gaudet et al., 2011)
zinc ion binding
inferred from electronic annotation with InterPro:IPR001878
(assigned by InterPro )
(FlyBase Curators et al., 2004-)
Biological Process (1 term)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
positive regulation of cytoplasmic translation
inferred from biological aspect of ancestor with PANTHER:PTN000543537
(assigned by GO_Central )
(Gaudet et al., 2011)
Cellular Component (1 term)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
cytoplasm
inferred from biological aspect of ancestor with PANTHER:PTN000543537
(assigned by GO_Central )
(Gaudet et al., 2011)
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
Polypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
adult stage
adult head
(Aradska et al., 2015)
day 7 of adulthood -- day 49 of adulthood
adult heart
(Cammarato et al., 2011)
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\CNBP in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyExpress - Embryonic expression images (BDGP data)
  • Stages(s) 1-3
  • Stages(s) 4-6
  • Stages(s) 7-8
  • Stages(s) 9-10
  • Stages(s) 11-12
  • Stages(s) 13-16
FlyBase Wiki
Image Based Resources
Alleles, Insertions, and Transgenic Constructs
Classical and Insertion Alleles ( 9 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 6 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of CNBP
Transgenic constructs containing regulatory region of CNBP
Deletions and Duplications ( 1 )
Phenotypes
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v7.1)
Homo sapiens (Human) (12)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\CNBP
14 of 15
Yes
Yes
 
Hsap\ZCCHC13
12 of 15
No
Yes
Hsap\ZCCHC9
2 of 15
No
Yes
Hsap\EIF4B
1 of 15
No
No
Hsap\EIF4H
1 of 15
No
No
Hsap\LIN28A
1 of 15
No
No
 
Hsap\LIN28B
1 of 15
No
No
 
Hsap\RBM34
1 of 15
No
No
Hsap\YBX2
1 of 15
No
No
Hsap\YBX3
1 of 15
No
No
Hsap\ZCCHC7
1 of 15
No
No
Hsap\ZCCHC14
1 of 15
No
No
Model Organism Orthologs (via DIOPT v7.1)
Mus musculus (laboratory mouse) (12)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Cnbp
14 of 15
Yes
Yes
Mmus\Zcchc13
12 of 15
No
Yes
Mmus\Zcchc9
2 of 15
No
Yes
Mmus\Eif4b
1 of 15
No
No
Mmus\Eif4h
1 of 15
No
No
Mmus\Lin28a
1 of 15
No
No
Mmus\Lin28b
1 of 15
No
No
Mmus\Rbm34
1 of 15
No
No
Mmus\Ybx1
1 of 15
No
No
Mmus\Ybx3
1 of 15
No
No
Mmus\Zcchc7
1 of 15
No
No
Mmus\Zcchc14
1 of 15
No
No
Rattus norvegicus (Norway rat) (12)
Rnor\Cnbp
12 of 13
Yes
Yes
Rnor\Zcchc13
7 of 13
No
Yes
Rnor\Eif4b
1 of 13
No
No
Rnor\Eif4h
1 of 13
No
No
Rnor\Lin28a
1 of 13
No
No
Rnor\Lin28b
1 of 13
No
No
Rnor\Rbm34
1 of 13
No
No
Rnor\Ybx1
1 of 13
No
No
Rnor\Ybx2
1 of 13
No
No
Rnor\Zcchc2
1 of 13
No
No
Rnor\Zcchc9
1 of 13
No
Yes
Rnor\Zcchc14
1 of 13
No
No
Xenopus tropicalis (Western clawed frog) (7)
Xtro\cnbp
7 of 12
Yes
Yes
Xtro\zcchc7
2 of 12
No
No
Xtro\zcchc9
2 of 12
No
Yes
Xtro\eif4b
1 of 12
No
No
Xtro\eif4h
1 of 12
No
No
Xtro\lin28a
1 of 12
No
No
Xtro\ybx1
1 of 12
No
No
Danio rerio (Zebrafish) (12)
Drer\cnbpa
13 of 15
Yes
Yes
Drer\cnbpb
13 of 15
Yes
Yes
Drer\si:ch1073-284b18.2
2 of 15
No
No
Drer\zcchc7
2 of 15
No
No
Drer\eif4ba
1 of 15
No
No
Drer\eif4bb
1 of 15
No
No
Drer\eif4h
1 of 15
No
No
Drer\LOC100333474
1 of 15
No
No
Drer\rbm34
1 of 15
No
No
Drer\ybx1
1 of 15
No
No
Drer\zcchc9
1 of 15
No
Yes
Drer\zcchc14
1 of 15
No
No
Caenorhabditis elegans (Nematode, roundworm) (14)
Cele\K08D12.3
11 of 15
Yes
Yes
Cele\F07E5.5
2 of 15
No
Yes
Cele\glh-4
2 of 15
No
Yes
Cele\cey-1
1 of 15
No
No
Cele\cey-2
1 of 15
No
No
Cele\cey-3
1 of 15
No
No
Cele\cey-4
1 of 15
No
No
Cele\clec-255
1 of 15
No
Yes
Cele\dct-10
1 of 15
No
Yes
Cele\drr-2
1 of 15
No
No
Cele\F11A10.7
1 of 15
No
No
Cele\F49F1.8
1 of 15
No
Yes
Cele\glh-1
1 of 15
No
No
Cele\lin-28
1 of 15
No
No
Arabidopsis thaliana (thale-cress) (10)
Atha\CSDP1
5 of 9
Yes
Yes
Atha\CSP3
5 of 9
Yes
Yes
Atha\AT1G75560
3 of 9
No
Yes
Atha\GRP2
3 of 9
No
Yes
Atha\AT3G43590
2 of 9
No
Yes
Atha\GRP2B
2 of 9
No
No
Atha\AT3G43490
1 of 9
No
Yes
Atha\AT5G46840
1 of 9
No
No
Atha\AT5G52380
1 of 9
No
Yes
Atha\PHIP1
1 of 9
No
Yes
Saccharomyces cerevisiae (Brewer's yeast) (4)
Scer\GIS2
13 of 15
Yes
Yes
Scer\AIR2
3 of 15
No
Yes
Scer\AIR1
2 of 15
No
No
Scer\NOP12
1 of 15
No
No
Schizosaccharomyces pombe (Fission yeast) (5)
Spom\byr3
9 of 12
Yes
Yes
Spom\air1
2 of 12
No
Yes
Spom\nop12
1 of 12
No
No
Spom\sce3
1 of 12
No
No
Spom\SPAC683.02c
1 of 12
No
Yes
Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG09190HHB )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly
Dmel\CNBP
Drosophila melanogaster
fruit fly
Dmel\lin-28
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00002931
Drosophila simulans
Dsim\GD26991
Drosophila sechellia
Dsec\GM11094
Drosophila sechellia
Dsec\GM11696
Drosophila sechellia
Dsec\GM26678
Drosophila erecta
Dere\GG26447
Drosophila erecta
Dere\GG26289
Drosophila yakuba
Dyak\GE27774
Drosophila yakuba
Dyak\GE28377
Drosophila ananassae
Dana\GF26470
Drosophila ananassae
Dana\GF27645
Drosophila pseudoobscura pseudoobscura
Dpse\GA17695
Drosophila pseudoobscura pseudoobscura
Dpse\GA14466
Drosophila persimilis
Dper\GL18446
Drosophila willistoni
Dwil\GK27594
Drosophila willistoni
Dwil\GK27426
Drosophila virilis
Dvir\GJ26764
Drosophila virilis
Dvir\GJ25682
Drosophila mojavensis
Dmoj\GI26857
Drosophila mojavensis
Dmoj\GI26051
Drosophila grimshawi
Dgri\GH24668
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG09150JBY )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17008328
Mayetiola destructor
Hessian fly
Mdes\Mdes005456
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL017419
Anopheles darlingi
American malaria mosquito
Adar\ADAC003620
Anopheles gambiae
Malaria mosquito
Agam\AGAP008075
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ001891
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W0Q8W )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA004191
Danaus plexippus
Monarch butterfly
Dple\DPOGS202911-PA
Heliconius melpomene
Postman butterfly
Hmel\HMEL011775
Apis florea
Little honeybee
Aflo\3060861028
Apis mellifera
Western honey bee
Amel\LOC725076
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP22049
Bombus terrestris
Buff-tailed bumblebee
Bter\15210659
Linepithema humile
Argentine ant
Lhum\LH25289
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:001ad3
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG000341
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_04291
Tribolium castaneum
Red flour beetle
Tcas\TC033584
Tribolium castaneum
Red flour beetle
Tcas\TC004043
Pediculus humanus
Human body louse
Phum\PHUM422420
Rhodnius prolixus
Kissing bug
Rpro\RPRC007449
Cimex lectularius
Bed bug
Clec\CLEC011975
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI000340
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI32906
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_04875
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_09957
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X0QKT )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strigamia maritima
European centipede
Smar\SMAR005478
Ixodes scapularis
Black-legged tick
Isca\ISCW015449
Stegodyphus mimosarum
African social velvet spider
Smim\KFM64429.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM75282.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM63831.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM62988.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM75488.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM59121.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM75969.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM60903.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM60419.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM71607.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM61837.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM60476.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM71872.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM69911.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM57974.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM64011.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM73794.1
Tetranychus urticae
Two-spotted spider mite
Turt\tetur114g00020
Tetranychus urticae
Two-spotted spider mite
Turt\tetur01g04350
Tetranychus urticae
Two-spotted spider mite
Turt\tetur01g04340
Tetranychus urticae
Two-spotted spider mite
Turt\tetur77g00080
Tetranychus urticae
Two-spotted spider mite
Turt\tetur04g02090
Tetranychus urticae
Two-spotted spider mite
Turt\tetur37g00250
Tetranychus urticae
Two-spotted spider mite
Turt\tetur20g02220
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_108156
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_116825
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_329398
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_244183
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_123780
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_247833
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_113083
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_262733
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_110892
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_115288
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_115800
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_246757
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_260042
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_326354
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_107260
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_114405
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_109462
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_103817
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_261182
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_114377
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_249472
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_322425
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_330412
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_244182
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_252574
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_117515
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_252582
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_265488
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_119499
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G0LZK )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-PolypL_76
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Hypp_381
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000021342
Gallus gallus
Domestic chicken
Ggal\CNBP
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v7.1)
Drosophila melanogaster (Fruit fly) (4)
Gene Symbol
Score
Source
Compara
eggNOG
Homologene
Inparanoid
Isobase
OrthoDB
OrthoFinder
orthoMCL
Panther
RoundUp
Alignment
eIF4B
1 of 10
lin-28
1 of 10
yps
1 of 10
Zcchc7
1 of 10
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Model Summary Ribbon
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 1 )
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Comments on Models/Modifiers Based on Experimental Evidence ( 0 )
     
    Disease Associations of Human Orthologs (via DIOPT v7.1 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    CNBP; CCHC-type zinc finger nucleic acid binding protein
    14 of 15
    116955
     
    ZCCHC13; zinc finger CCHC-type containing 13
    12 of 15
        Functional Complementation Data
        Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
        Interactions
        Summary of Physical Interactions
        esyN Network Diagram
        Show neighbor-neighbor interactions:
        Select Layout:
        Legend:
        Protein
        RNA
        Selected Interactor(s)
        Interactions Browser
        View in Interactions Browser
        Please see the Physical Interaction reports below for full details
        protein-protein
        Physical Interaction
        Assay
        References
        CNBP - InR
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Friedman et al., 2011)
        Summary of Genetic Interactions
        esyN Network Diagram
        esyN Network Key:
        Suppression
        Enhancement
        View in Interactions Browser
        Please look at the allele data for full details of the genetic interactions
        Starting gene(s)
        Interaction type
        Interacting gene(s)
        Reference
        CNBP
        suppressible
        Myc
        (Antonucci et al., 2014)
        Starting gene(s)
        Interaction type
        Interacting gene(s)
        Reference
        External Data
        Linkouts
        BioGRID - A database of protein and genetic interactions.
        DroID - A comprehensive database of gene and protein interactions.
        InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
        MIST (protein-protein) - An integrated Molecular Interaction Database
        Pathways
        Gene Group - Pathway Membership (FlyBase)
        External Data
        Linkouts
        Genomic Location and Detailed Mapping Data
        Chromosome (arm)
        2R
        Recombination map
        2-101
        Cytogenetic map
        59B6-59B6
        Sequence location
        2R:22,934,569..22,937,077 [-]
        FlyBase Computed Cytological Location
        Cytogenetic map
        Evidence for location
        59B6-59B6
        Limits computationally determined from genome sequence between P{PZ}Nup21410444 and P{PZ}l(2)0649606496&P{lacW}l(2)k09913k09913
        Experimentally Determined Cytological Location
        Cytogenetic map
        Notes
        References
        Experimentally Determined Recombination Data
        Location
        2-101
        (FlyBase, 2016)
        2-106.3
        (Comeron et al., 2012)
        Left of (cM)
        Right of (cM)
        Notes
        Stocks and Reagents
        Stocks (11)
        Genomic Clones (18)
         

        Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

        cDNA Clones (219)
         

        Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

        cDNA clones, fully sequences
        BDGP DGC clones
        Other clones
        Drosophila Genomics Resource Center cDNA clones

        For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

        cDNA Clones, End Sequenced (ESTs)
        BDGP DGC clones
        Other clones
        RNAi and Array Information
        Linkouts
        DRSC - Results frm RNAi screens
        GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
        Antibody Information
        Laboratory Generated Antibodies
         
        Commercially Available Antibodies
         
        Other Information
        Relationship to Other Genes
        Source for database identify of
        Source for identity of: CNBP CG3800
        (Antonucci et al., 2014)
        Source for database merge of
        Source for merge of: CG3800 anon- EST:fe1B4
        (FlyBase, 1996-)
        Source for merge of: CG3800 anon- EST:fe2B6
        (Bayraktaroglu, 2000.11.2)
        Source for merge of: CG3800 BEST:GM06241
        (Rana, 2004.7.8)
        Additional comments
        Other Comments
        Accession number was AE003459; AAF46931.
        Origin and Etymology
        Discoverer
        Etymology
        Named 'CNBP' after the human ortholog.
        (Antonucci et al., 2014)
        Identification
        External Crossreferences and Linkouts ( 44 )
        Sequence Crossreferences
        NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
        GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
        GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
        RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
        UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
        UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
        Other crossreferences
        BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
        Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
        Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
        Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
        Flygut - An atlas of the Drosophila adult midgut
        GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
        InterPro - A database of protein families, domains and functional sites
        KEGG Genes - Molecular building blocks of life in the genomic space.
        modMine - A data warehouse for the modENCODE project
        Linkouts
        BioGRID - A database of protein and genetic interactions.
        DroID - A comprehensive database of gene and protein interactions.
        DRSC - Results frm RNAi screens
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        FlyMine - An integrated database for Drosophila genomics
        InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
        MIST (protein-protein) - An integrated Molecular Interaction Database
        Synonyms and Secondary IDs (10)
        Reported As
        Symbol Synonym
        BEST:GM06241
        CG11716
        (Mount, 2001.8.14)
        CG3800
        (Kolkhof et al., 2017, Transgenic RNAi Project members, 2017-, Çiçek et al., 2016, Sarov et al., 2016, Hosono et al., 2015, Hughes et al., 2014, Kockmann et al., 2013, Neumüller et al., 2013, Cammarato et al., 2011, Friedman et al., 2011, Kong et al., 2010, Ni et al., 2010.12.1, Keleman et al., 2009.8.5, Haussmann et al., 2008, Grieder et al., 2007)
        CNBP
        (Antonucci et al., 2014)
        anon-EST:fe1B4
        anon-EST:fe2B6
        dCNBP
        (Antonucci et al., 2014)
        Name Synonyms
        CCHC-type zinc finger nucleic acid binding protein
        (Antonucci et al., 2014)
        anon-fast-evolving-1B4
        anon-fast-evolving-2B6
        Secondary FlyBase IDs
        • FBgn0025228
        • FBgn0025268
        • FBgn0034801
        • FBgn0045797
        Datasets (0)
        Study focus (0)
        Experimental Role
        Project
        Project Type
        Title
        References (53)