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Gene Dmel\CG3800

General Information
Symbol	Dmel\CG3800	Species	D. melanogaster
Name		Annotation symbol	CG3800
Feature type	protein_coding_gene	FlyBase ID	FBgn0034802
Gene Model Status	Current	Stock availability	7 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	59B6-59B6	Sequence location	2R:18,822,092..18,824,453 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG3800 (FBgn0034802). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: nucleic acid binding. The biological processes in which it is involved are not known. 11 alleles are reported. The phenotypes of these alleles are annotated with: trichogen cell; mesothoracic tergum. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Zinc finger, CCHC-type. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of high expression. Peak expression observed within 00-18 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult midgut, larval Malpighian tubules, adult testis. Comments on Affy2 ProbeSet: ProbeSet 1640915_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG3800. Gene sequence location is 2R:18822092..18824453.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 59B6-59B6   Limits computationally determined from genome sequence between P{PZ}Nup21410444 and P{PZ}l(2)0649606496&P{lacW}l(2)k09913k09913
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG3800 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	DGC clone GM14667 appears problematic: incomplete CDS
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG3800-RA FBtr0071994  NM_137895   2362   165 CG3800-RB FBtr0303464  NM_001202063   2155   165
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG3800-PA   FBpp0071903   17.6   165   8.71     NP_611739   AAN16117 CG3800-PB   FBpp0292516   17.6   165   8.71     NP_001188992   ADV37238
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, CCHC-type (IPR001878)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA433198   AA433246   AA694874   AA696251   AA735737   AA736012   AA736064   AA736068   AA802657   AA802741   AA802914   AA803337   AA821136   AE013599 AAN16117   AE013599 ADV37238   AI108006   AI134229   AI258514   AI259906   AI260988   AI294384   AI296610   AI297322   AI402769   AI403336   AI517327   AI517686   AI546431   AI944429   AI945822   AW941398   AW943952   AY075371 AAL68216   AY118596 AAM49965   BE978004   BF486551   BF487342   BF488059   BF490324   BF491971   BF493195   BF493368   BF493369   BF493941   BF494309   BF495365   BF496642   BF497932   BF501769   BF504517   BF505710   BG633677   BG633901   BG639388   BG640124   BI141723   BI141790   BI163001   BI163017   BI167764   BI171547   BI172174   BI230420   BI231336   BI236560   BI239113   BI240275   BI241752   BI242557   BI243200   BI351625   BI352061   BI352251   BI352262   BI352392   BI352716   BI352799   BI353819   BI354193   BI354581   BI354801   BI354833   BI355736   BI355855   BI357034   BI357697   BI358412   BI361545   BI361740   BI362555   BI363820   BI365383   BI370764   BI373240   BI375532   BI483741   BI486357   BI580001   BI588371   BI605909   BI609120   BI619718   BI622952   BI631046   BP542202   BP542749   BP545823   BP546649   BP549086   BP549937   BP553946   BP554921   BP557651   BP560394   BP560396   BQ102843   BQ103165   BQ103637   BT031121   CK132233   CK604252   CK604253   CK604689   CK604690   CK605404   CK605405   CK656948   CK658645   CK659651   CK661222   CK661244   CK662368   CL632197   CO155237   CO155272   CO155306   CO157116   CO176971   CO177042   CO180128   CO180244   CO194978   CO195332   CO264849   CO277485   CO277500   CO278332   CO281010   CO287147   CO304356   CO305987   CO311023   CO311865   CO314927   CO317388   CO317479   CO320379   CO323829   CO325677   CO329922   CO336599   CO337716   CO338023   CZ475850   EC053286   EC063237   EC064625   EC065241   EC065536   EC067406   EC069152   EC069689   EC071971   EC072344   EC072442   EC076137   EC076618   EC078068   EC080098   EC081068   EC089547   EC206145   EC215256   EC223979   EC232283   EC236177   EC237491   EC239215   EC244461   EC245019   EC246532   EC248923   EC249341   EC261072   EC261463   EC264740   EC265251   EC267032   EC267703   EL874818   EL874947   EL875057   EL878132   EL878252   EL880220   EL886598   EV574935   EV575614   EV576775   EV576846   EV577630   EV578312   EV578372   EV579847   EV579976   EV580059   EV580324   EV581068   EV582642   EV584695   EV585399   EV586183   EV586512   EV587308   EV590399   EV593370   EV593374   EV593446   EV594818   EV594873   EV595724   EV595742   EV596812   EV599127   EV599385   EV599663   GH750053   GH752501   GH783966   GH786876   GH791317   GH807575   GH838806   GH863185   GH892022   GH898329   GH898674   GH899362   GH899539   GH899675   GH912277   GH916650
UniProtKB/Swiss-Prot	Q8T8R1
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) central brain primordium   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) ventral nerve cord primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   dorsal pharyngeal muscle   (Fisher et al., 2012) embryonic brain   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval muscle system   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult midgut, larval Malpighian tubules, adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2026.05 Larval Midgut    291.9 Larval Hindgut    1049.2 Larval Malpighian Tubules    442.9 Larval Fat Body    736.1 Larval Salivary Gland    1393.8 Larval Trachea    1824.175 Larval Carcass    1148.625 Adult Head    1041.7 Adult Eye    1793.075 Adult Brain    791.9 Adult Thoracic-Abdominal Ganglion    940.9 Adult Crop    935.2 Adult Midgut    363 Adult Hindgut    721.6 Adult Malpighian Tubules    729.5 Adult Fat Body    674.6 Adult Salivary Gland    660 Adult Heart    627.275 Adult VirginFemale Spermatheca    1407.8 Adult InseminatedFemale Spermatheca    1433.4 Adult Ovary    1903.5 Adult Testis    404.2 Adult Male Accessory Gland    1873.3 Adult Carcass    622.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2026.05) Larval Midgut    291.9 Larval Hindgut  (1049.2) Larval Malpighian Tubules    442.9 Larval Fat Body  (736.1) Larval Salivary Gland  (1393.8) Larval Trachea  (1824.175) Larval Carcass  (1148.625) Adult Head  (1041.7) Adult Eye  (1793.075) Adult Brain  (791.9) Adult Thoracic-Abdominal Ganglion  (940.9) Adult Crop  (935.2) Adult Midgut    363 Adult Hindgut  (721.6) Adult Malpighian Tubules  (729.5) Adult Fat Body  (674.6) Adult Salivary Gland  (660) Adult Heart  (627.275) Adult VirginFemale Spermatheca  (1407.8) Adult InseminatedFemale Spermatheca  (1433.4) Adult Ovary  (1903.5) Adult Testis    404.2 Adult Male Accessory Gland  (1873.3) Adult Carcass  (622.6) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2026.05) Larval Midgut    291.9 Larval Hindgut  1049.2 Larval Malpighian Tubules    442.9 Larval Fat Body    736.1 Larval Salivary Gland  (1393.8) Larval Trachea  (1824.175) Larval Carcass  (1148.625) Adult Head  1041.7 Adult Eye  (1793.075) Adult Brain    791.9 Adult Thoracic-Abdominal Ganglion    940.9 Adult Crop    935.2 Adult Midgut    363 Adult Hindgut    721.6 Adult Malpighian Tubules    729.5 Adult Fat Body    674.6 Adult Salivary Gland    660 Adult Heart    627.275 Adult VirginFemale Spermatheca  (1407.8) Adult InseminatedFemale Spermatheca  (1433.4) Adult Ovary  (1903.5) Adult Testis    404.2 Adult Male Accessory Gland  (1873.3) Adult Carcass    622.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2026.05 Larval Midgut    291.9 Larval Hindgut    1049.2 Larval Malpighian Tubules    442.9 Larval Fat Body    736.1 Larval Salivary Gland    1393.8 Larval Trachea    1824.175 Larval Carcass    1148.625 Adult Head    1041.7 Adult Eye    1793.075 Adult Brain    791.9 Adult Thoracic-Abdominal Ganglion    940.9 Adult Crop    935.2 Adult Midgut    363 Adult Hindgut    721.6 Adult Malpighian Tubules    729.5 Adult Fat Body    674.6 Adult Salivary Gland    660 Adult Heart    627.275 Adult VirginFemale Spermatheca    1407.8 Adult InseminatedFemale Spermatheca    1433.4 Adult Ovary    1903.5 Adult Testis    404.2 Adult Male Accessory Gland    1873.3 Adult Carcass    622.6 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2026.05 Larval Midgut    291.9 Larval Hindgut    1049.2 Larval Malpighian Tubules    442.9 Larval Fat Body    736.1 Larval Salivary Gland    1393.8 Larval Trachea    1824.175 Larval Carcass    1148.625 Adult Head    1041.7 Adult Eye    1793.075 Adult Brain    791.9 Adult Thoracic-Abdominal Ganglion    940.9 Adult Crop    935.2 Adult Midgut    363 Adult Hindgut    721.6 Adult Malpighian Tubules    729.5 Adult Fat Body    674.6 Adult Salivary Gland    660 Adult Heart    627.275 Adult VirginFemale Spermatheca    1407.8 Adult InseminatedFemale Spermatheca    1433.4 Adult Ovary    1903.5 Adult Testis    404.2 Adult Male Accessory Gland    1873.3 Adult Carcass    622.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2026.05) Larval Midgut    291.9 Larval Hindgut  (1049.2) Larval Malpighian Tubules    442.9 Larval Fat Body  736.1 Larval Salivary Gland  (1393.8) Larval Trachea  (1824.175) Larval Carcass  (1148.625) Adult Head  (1041.7) Adult Eye  (1793.075) Adult Brain  791.9 Adult Thoracic-Abdominal Ganglion  (940.9) Adult Crop  (935.2) Adult Midgut    363 Adult Hindgut  721.6 Adult Malpighian Tubules  729.5 Adult Fat Body  674.6 Adult Salivary Gland  660 Adult Heart  627.275 Adult VirginFemale Spermatheca  (1407.8) Adult InseminatedFemale Spermatheca  (1433.4) Adult Ovary  (1903.5) Adult Testis    404.2 Adult Male Accessory Gland  (1873.3) Adult Carcass  622.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2026.05) Larval Midgut    291.9 Larval Hindgut  1049.2 Larval Malpighian Tubules    442.9 Larval Fat Body    736.1 Larval Salivary Gland  1393.8 Larval Trachea  (1824.175) Larval Carcass  1148.625 Adult Head  1041.7 Adult Eye  (1793.075) Adult Brain    791.9 Adult Thoracic-Abdominal Ganglion    940.9 Adult Crop    935.2 Adult Midgut    363 Adult Hindgut    721.6 Adult Malpighian Tubules    729.5 Adult Fat Body    674.6 Adult Salivary Gland    660 Adult Heart    627.275 Adult VirginFemale Spermatheca  1407.8 Adult InseminatedFemale Spermatheca  1433.4 Adult Ovary  (1903.5) Adult Testis    404.2 Adult Male Accessory Gland  (1873.3) Adult Carcass    622.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2026.05 Larval Midgut    291.9 Larval Hindgut    1049.2 Larval Malpighian Tubules    442.9 Larval Fat Body    736.1 Larval Salivary Gland    1393.8 Larval Trachea    1824.175 Larval Carcass    1148.625 Adult Head    1041.7 Adult Eye    1793.075 Adult Brain    791.9 Adult Thoracic-Abdominal Ganglion    940.9 Adult Crop    935.2 Adult Midgut    363 Adult Hindgut    721.6 Adult Malpighian Tubules    729.5 Adult Fat Body    674.6 Adult Salivary Gland    660 Adult Heart    627.275 Adult VirginFemale Spermatheca    1407.8 Adult InseminatedFemale Spermatheca    1433.4 Adult Ovary    1903.5 Adult Testis    404.2 Adult Male Accessory Gland    1873.3 Adult Carcass    622.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    1041.7   NA  Eye    1793.075   NA  Brain    791.9   2026.05  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    940.9   NA  Crop    935.2   291.9  Midgut    363   1049.2  Hindgut    721.6   442.9  Malpighian Tubules    729.5   736.1  Fat Body    674.6   1393.8  Salivary Gland    660   NA  Heart    627.275   1824.175  Trachea    NA   NA  VirginFemale Spermatheca    1407.8   NA  InseminatedFemale Spermatheca    1433.4   NA  Ovary    1903.5   NA  Testis    404.2   NA  Male Accessory Gland    1873.3   1148.625  Carcass    622.6 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1895 central nervous system, larvae L3    2505 central nervous system, pupae P8    592 head, virgin 1-day female    614 head, virgin 4-day female    757 head, virgin 20-day female    350 head, mated 1-day female    640 head, mated 4-day female    651 head, mated 20-day female    391 head, mated 1-day male    617 head, mated 4-day male    837 head, mated 20-day male    799 salivary gland, larvae L3 wandering    148 salivary gland, white prepupae    284 digestive system, larvae L3 wandering    419 digestive system, 1-day adult    277 digestive system, 4-day adult    593 digestive system, 20-day adult    324 fat body, larvae L3 wandering    277 fat body, white prepupae    519 fat body, pupae P8    1033 carcass, larvae L3 wandering    1594 carcass, 1-day adult    365 carcass, 4-day adult    689 carcass, 20-day adult    462 ovary, virgin 4-day female    1989 ovary, mated 4-day female    3194 testis, mated 4-day male    300 accessory gland, mated 4-day male    488 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (1895) central nervous system, larvae L3  (2505) central nervous system, pupae P8  (592) head, virgin 1-day female  (614) head, virgin 4-day female  (757) head, virgin 20-day female  (350) head, mated 1-day female  (640) head, mated 4-day female  (651) head, mated 20-day female  (391) head, mated 1-day male  (617) head, mated 4-day male  (837) head, mated 20-day male  (799) salivary gland, larvae L3 wandering  (148) salivary gland, white prepupae  (284) digestive system, larvae L3 wandering  (419) digestive system, 1-day adult  (277) digestive system, 4-day adult  (593) digestive system, 20-day adult  (324) fat body, larvae L3 wandering  (277) fat body, white prepupae  (519) fat body, pupae P8  (1033) carcass, larvae L3 wandering  (1594) carcass, 1-day adult  (365) carcass, 4-day adult  (689) carcass, 20-day adult  (462) ovary, virgin 4-day female  (1989) ovary, mated 4-day female  (3194) testis, mated 4-day male  (300) accessory gland, mated 4-day male  (488) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (1895) central nervous system, larvae L3  (2505) central nervous system, pupae P8  (592) head, virgin 1-day female  (614) head, virgin 4-day female  (757) head, virgin 20-day female  (350) head, mated 1-day female  (640) head, mated 4-day female  (651) head, mated 20-day female  (391) head, mated 1-day male  (617) head, mated 4-day male  (837) head, mated 20-day male  (799) salivary gland, larvae L3 wandering  (148) salivary gland, white prepupae  (284) digestive system, larvae L3 wandering  (419) digestive system, 1-day adult  (277) digestive system, 4-day adult  (593) digestive system, 20-day adult  (324) fat body, larvae L3 wandering  (277) fat body, white prepupae  (519) fat body, pupae P8  (1033) carcass, larvae L3 wandering  (1594) carcass, 1-day adult  (365) carcass, 4-day adult  (689) carcass, 20-day adult  (462) ovary, virgin 4-day female  (1989) ovary, mated 4-day female  (3194) testis, mated 4-day male  (300) accessory gland, mated 4-day male  (488) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1895 central nervous system, larvae L3    2505 central nervous system, pupae P8    592 head, virgin 1-day female    614 head, virgin 4-day female    757 head, virgin 20-day female    350 head, mated 1-day female    640 head, mated 4-day female    651 head, mated 20-day female    391 head, mated 1-day male    617 head, mated 4-day male    837 head, mated 20-day male    799 salivary gland, larvae L3 wandering    148 salivary gland, white prepupae    284 digestive system, larvae L3 wandering    419 digestive system, 1-day adult    277 digestive system, 4-day adult    593 digestive system, 20-day adult    324 fat body, larvae L3 wandering    277 fat body, white prepupae    519 fat body, pupae P8    1033 carcass, larvae L3 wandering    1594 carcass, 1-day adult    365 carcass, 4-day adult    689 carcass, 20-day adult    462 ovary, virgin 4-day female    1989 ovary, mated 4-day female    3194 testis, mated 4-day male    300 accessory gland, mated 4-day male    488 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1895 central nervous system, larvae L3    2505 central nervous system, pupae P8    592 head, virgin 1-day female    614 head, virgin 4-day female    757 head, virgin 20-day female    350 head, mated 1-day female    640 head, mated 4-day female    651 head, mated 20-day female    391 head, mated 1-day male    617 head, mated 4-day male    837 head, mated 20-day male    799 salivary gland, larvae L3 wandering    148 salivary gland, white prepupae    284 digestive system, larvae L3 wandering    419 digestive system, 1-day adult    277 digestive system, 4-day adult    593 digestive system, 20-day adult    324 fat body, larvae L3 wandering    277 fat body, white prepupae    519 fat body, pupae P8    1033 carcass, larvae L3 wandering    1594 carcass, 1-day adult    365 carcass, 4-day adult    689 carcass, 20-day adult    462 ovary, virgin 4-day female    1989 ovary, mated 4-day female    3194 testis, mated 4-day male    300 accessory gland, mated 4-day male    488 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (1895) central nervous system, larvae L3  (2505) central nervous system, pupae P8  (592) head, virgin 1-day female  (614) head, virgin 4-day female  (757) head, virgin 20-day female  (350) head, mated 1-day female  (640) head, mated 4-day female  (651) head, mated 20-day female  (391) head, mated 1-day male  (617) head, mated 4-day male  (837) head, mated 20-day male  (799) salivary gland, larvae L3 wandering  (148) salivary gland, white prepupae  (284) digestive system, larvae L3 wandering  (419) digestive system, 1-day adult  (277) digestive system, 4-day adult  (593) digestive system, 20-day adult  (324) fat body, larvae L3 wandering  (277) fat body, white prepupae  (519) fat body, pupae P8  (1033) carcass, larvae L3 wandering  (1594) carcass, 1-day adult  (365) carcass, 4-day adult  (689) carcass, 20-day adult  (462) ovary, virgin 4-day female  (1989) ovary, mated 4-day female  (3194) testis, mated 4-day male  (300) accessory gland, mated 4-day male  (488) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (1895) central nervous system, larvae L3  (2505) central nervous system, pupae P8  (592) head, virgin 1-day female  (614) head, virgin 4-day female  (757) head, virgin 20-day female  (350) head, mated 1-day female  (640) head, mated 4-day female  (651) head, mated 20-day female  (391) head, mated 1-day male  (617) head, mated 4-day male  (837) head, mated 20-day male  (799) salivary gland, larvae L3 wandering  (148) salivary gland, white prepupae  (284) digestive system, larvae L3 wandering  (419) digestive system, 1-day adult  (277) digestive system, 4-day adult  (593) digestive system, 20-day adult  (324) fat body, larvae L3 wandering  (277) fat body, white prepupae  (519) fat body, pupae P8  (1033) carcass, larvae L3 wandering  (1594) carcass, 1-day adult  (365) carcass, 4-day adult  (689) carcass, 20-day adult  (462) ovary, virgin 4-day female  (1989) ovary, mated 4-day female  (3194) testis, mated 4-day male  (300) accessory gland, mated 4-day male  (488) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1895 central nervous system, larvae L3    2505 central nervous system, pupae P8    592 head, virgin 1-day female    614 head, virgin 4-day female    757 head, virgin 20-day female    350 head, mated 1-day female    640 head, mated 4-day female    651 head, mated 20-day female    391 head, mated 1-day male    617 head, mated 4-day male    837 head, mated 20-day male    799 salivary gland, larvae L3 wandering    148 salivary gland, white prepupae    284 digestive system, larvae L3 wandering    419 digestive system, 1-day adult    277 digestive system, 4-day adult    593 digestive system, 20-day adult    324 fat body, larvae L3 wandering    277 fat body, white prepupae    519 fat body, pupae P8    1033 carcass, larvae L3 wandering    1594 carcass, 1-day adult    365 carcass, 4-day adult    689 carcass, 20-day adult    462 ovary, virgin 4-day female    1989 ovary, mated 4-day female    3194 testis, mated 4-day male    300 accessory gland, mated 4-day male    488 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of high expression. Peak expression observed within 00-18 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    510 embryo 02-04hr    364 embryo 04-06hr    307 embryo 06-08hr    511 embryo 08-10hr    438 embryo 10-12hr    319 embryo 12-14hr    322 embryo 14-16hr    194 embryo 16-18hr    149 embryo 18-20hr    115 embryo 20-22hr    103 embryo 22-24hr    93 larva L1    253 larva L2    276 larva L3 12hr old    217 larva L3 puffstage 1-2    180 larva L3 puffstage 3-6    254 larva L3 puffstage 7-9    277 white prepupae new    267 white prepupae 12hr    261 white prepupae 24hr    437 pupae 2d postWPP    233 pupae 3d postWPP    127 pupae 4d postWPP    87 adult male 01day    98 adult male 05day    113 adult male 30day    113 adult female 01day    292 adult female 05day    484 adult female 30day    497 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (510) embryo 02-04hr  (364) embryo 04-06hr  (307) embryo 06-08hr  (511) embryo 08-10hr  (438) embryo 10-12hr  (319) embryo 12-14hr  (322) embryo 14-16hr  (194) embryo 16-18hr  (149) embryo 18-20hr  (115) embryo 20-22hr  (103) embryo 22-24hr  (93) larva L1  (253) larva L2  (276) larva L3 12hr old  (217) larva L3 puffstage 1-2  (180) larva L3 puffstage 3-6  (254) larva L3 puffstage 7-9  (277) white prepupae new  (267) white prepupae 12hr  (261) white prepupae 24hr  (437) pupae 2d postWPP  (233) pupae 3d postWPP  (127) pupae 4d postWPP  (87) adult male 01day  (98) adult male 05day  (113) adult male 30day  (113) adult female 01day  (292) adult female 05day  (484) adult female 30day  (497) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (510) embryo 02-04hr  (364) embryo 04-06hr  (307) embryo 06-08hr  (511) embryo 08-10hr  (438) embryo 10-12hr  (319) embryo 12-14hr  (322) embryo 14-16hr  (194) embryo 16-18hr  (149) embryo 18-20hr  (115) embryo 20-22hr  103 embryo 22-24hr    93 larva L1  (253) larva L2  (276) larva L3 12hr old  (217) larva L3 puffstage 1-2  (180) larva L3 puffstage 3-6  (254) larva L3 puffstage 7-9  (277) white prepupae new  (267) white prepupae 12hr  (261) white prepupae 24hr  (437) pupae 2d postWPP  (233) pupae 3d postWPP  (127) pupae 4d postWPP    87 adult male 01day    98 adult male 05day  (113) adult male 30day  (113) adult female 01day  (292) adult female 05day  (484) adult female 30day  (497) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    510 embryo 02-04hr    364 embryo 04-06hr    307 embryo 06-08hr    511 embryo 08-10hr    438 embryo 10-12hr    319 embryo 12-14hr    322 embryo 14-16hr    194 embryo 16-18hr    149 embryo 18-20hr    115 embryo 20-22hr    103 embryo 22-24hr    93 larva L1    253 larva L2    276 larva L3 12hr old    217 larva L3 puffstage 1-2    180 larva L3 puffstage 3-6    254 larva L3 puffstage 7-9    277 white prepupae new    267 white prepupae 12hr    261 white prepupae 24hr    437 pupae 2d postWPP    233 pupae 3d postWPP    127 pupae 4d postWPP    87 adult male 01day    98 adult male 05day    113 adult male 30day    113 adult female 01day    292 adult female 05day    484 adult female 30day    497 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    510 embryo 02-04hr    364 embryo 04-06hr    307 embryo 06-08hr    511 embryo 08-10hr    438 embryo 10-12hr    319 embryo 12-14hr    322 embryo 14-16hr    194 embryo 16-18hr    149 embryo 18-20hr    115 embryo 20-22hr    103 embryo 22-24hr    93 larva L1    253 larva L2    276 larva L3 12hr old    217 larva L3 puffstage 1-2    180 larva L3 puffstage 3-6    254 larva L3 puffstage 7-9    277 white prepupae new    267 white prepupae 12hr    261 white prepupae 24hr    437 pupae 2d postWPP    233 pupae 3d postWPP    127 pupae 4d postWPP    87 adult male 01day    98 adult male 05day    113 adult male 30day    113 adult female 01day    292 adult female 05day    484 adult female 30day    497 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (510) embryo 02-04hr  (364) embryo 04-06hr  (307) embryo 06-08hr  (511) embryo 08-10hr  (438) embryo 10-12hr  (319) embryo 12-14hr  (322) embryo 14-16hr  (194) embryo 16-18hr  (149) embryo 18-20hr  (115) embryo 20-22hr  (103) embryo 22-24hr  (93) larva L1  (253) larva L2  (276) larva L3 12hr old  (217) larva L3 puffstage 1-2  (180) larva L3 puffstage 3-6  (254) larva L3 puffstage 7-9  (277) white prepupae new  (267) white prepupae 12hr  (261) white prepupae 24hr  (437) pupae 2d postWPP  (233) pupae 3d postWPP  (127) pupae 4d postWPP  (87) adult male 01day  (98) adult male 05day  (113) adult male 30day  (113) adult female 01day  (292) adult female 05day  (484) adult female 30day  (497) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (510) embryo 02-04hr  (364) embryo 04-06hr  (307) embryo 06-08hr  (511) embryo 08-10hr  (438) embryo 10-12hr  (319) embryo 12-14hr  (322) embryo 14-16hr  (194) embryo 16-18hr  (149) embryo 18-20hr  115 embryo 20-22hr  103 embryo 22-24hr    93 larva L1  (253) larva L2  (276) larva L3 12hr old  (217) larva L3 puffstage 1-2  (180) larva L3 puffstage 3-6  (254) larva L3 puffstage 7-9  (277) white prepupae new  (267) white prepupae 12hr  (261) white prepupae 24hr  (437) pupae 2d postWPP  (233) pupae 3d postWPP  127 pupae 4d postWPP    87 adult male 01day    98 adult male 05day  113 adult male 30day  113 adult female 01day  (292) adult female 05day  (484) adult female 30day  (497) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    510 embryo 02-04hr    364 embryo 04-06hr    307 embryo 06-08hr    511 embryo 08-10hr    438 embryo 10-12hr    319 embryo 12-14hr    322 embryo 14-16hr    194 embryo 16-18hr    149 embryo 18-20hr    115 embryo 20-22hr    103 embryo 22-24hr    93 larva L1    253 larva L2    276 larva L3 12hr old    217 larva L3 puffstage 1-2    180 larva L3 puffstage 3-6    254 larva L3 puffstage 7-9    277 white prepupae new    267 white prepupae 12hr    261 white prepupae 24hr    437 pupae 2d postWPP    233 pupae 3d postWPP    127 pupae 4d postWPP    87 adult male 01day    98 adult male 05day    113 adult male 30day    113 adult female 01day    292 adult female 05day    484 adult female 30day    497 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    1466 Schneider line 2 Sg4    1034 embryonic 1182-4H    989 embryonic GM2    660 embryonic Kc167    775 embryonic S1    1531 embryonic S3    1356 leg disc CME L1    1907 wing disc CME-W2    1579 wing disc ML-DmD8    2018 wing disc ML-DmD9    1554 wing disc ML-DmD16-c3    2412 wing disc ML-DmD21    1752 wing disc ML-DmD32    1465 haltere disc ML-DmD17-c3    2643 eye-antennal disc ML-DmD11    1334 antennal disc ML-DmD20-c5    1222 mixed discs ML-DmD4-c1    1762 CNS ML-DmBG1-c1    2682 CNS ML-DmBG2-c2    1127 tumorous blood cells mbn2    648 ovary fGS/OSS    2745 ovary OSC    2765 ovary OSS    2446 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (1466) Schneider line 2 Sg4  (1034) embryonic 1182-4H  (989) embryonic GM2  (660) embryonic Kc167  (775) embryonic S1  (1531) embryonic S3  (1356) leg disc CME L1  (1907) wing disc CME-W2  (1579) wing disc ML-DmD8  (2018) wing disc ML-DmD9  (1554) wing disc ML-DmD16-c3  (2412) wing disc ML-DmD21  (1752) wing disc ML-DmD32  (1465) haltere disc ML-DmD17-c3  (2643) eye-antennal disc ML-DmD11  (1334) antennal disc ML-DmD20-c5  (1222) mixed discs ML-DmD4-c1  (1762) CNS ML-DmBG1-c1  (2682) CNS ML-DmBG2-c2  (1127) tumorous blood cells mbn2  (648) ovary fGS/OSS  (2745) ovary OSC  (2765) ovary OSS  (2446) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (1466) Schneider line 2 Sg4  (1034) embryonic 1182-4H  (989) embryonic GM2  (660) embryonic Kc167  (775) embryonic S1  (1531) embryonic S3  (1356) leg disc CME L1  (1907) wing disc CME-W2  (1579) wing disc ML-DmD8  (2018) wing disc ML-DmD9  (1554) wing disc ML-DmD16-c3  (2412) wing disc ML-DmD21  (1752) wing disc ML-DmD32  (1465) haltere disc ML-DmD17-c3  (2643) eye-antennal disc ML-DmD11  (1334) antennal disc ML-DmD20-c5  (1222) mixed discs ML-DmD4-c1  (1762) CNS ML-DmBG1-c1  (2682) CNS ML-DmBG2-c2  (1127) tumorous blood cells mbn2  (648) ovary fGS/OSS  (2745) ovary OSC  (2765) ovary OSS  (2446) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    1466 Schneider line 2 Sg4    1034 embryonic 1182-4H    989 embryonic GM2    660 embryonic Kc167    775 embryonic S1    1531 embryonic S3    1356 leg disc CME L1    1907 wing disc CME-W2    1579 wing disc ML-DmD8    2018 wing disc ML-DmD9    1554 wing disc ML-DmD16-c3    2412 wing disc ML-DmD21    1752 wing disc ML-DmD32    1465 haltere disc ML-DmD17-c3    2643 eye-antennal disc ML-DmD11    1334 antennal disc ML-DmD20-c5    1222 mixed discs ML-DmD4-c1    1762 CNS ML-DmBG1-c1    2682 CNS ML-DmBG2-c2    1127 tumorous blood cells mbn2    648 ovary fGS/OSS    2745 ovary OSC    2765 ovary OSS    2446 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    1466 Schneider line 2 Sg4    1034 embryonic 1182-4H    989 embryonic GM2    660 embryonic Kc167    775 embryonic S1    1531 embryonic S3    1356 leg disc CME L1    1907 wing disc CME-W2    1579 wing disc ML-DmD8    2018 wing disc ML-DmD9    1554 wing disc ML-DmD16-c3    2412 wing disc ML-DmD21    1752 wing disc ML-DmD32    1465 haltere disc ML-DmD17-c3    2643 eye-antennal disc ML-DmD11    1334 antennal disc ML-DmD20-c5    1222 mixed discs ML-DmD4-c1    1762 CNS ML-DmBG1-c1    2682 CNS ML-DmBG2-c2    1127 tumorous blood cells mbn2    648 ovary fGS/OSS    2745 ovary OSC    2765 ovary OSS    2446 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (1466) Schneider line 2 Sg4  (1034) embryonic 1182-4H  (989) embryonic GM2  (660) embryonic Kc167  (775) embryonic S1  (1531) embryonic S3  (1356) leg disc CME L1  (1907) wing disc CME-W2  (1579) wing disc ML-DmD8  (2018) wing disc ML-DmD9  (1554) wing disc ML-DmD16-c3  (2412) wing disc ML-DmD21  (1752) wing disc ML-DmD32  (1465) haltere disc ML-DmD17-c3  (2643) eye-antennal disc ML-DmD11  (1334) antennal disc ML-DmD20-c5  (1222) mixed discs ML-DmD4-c1  (1762) CNS ML-DmBG1-c1  (2682) CNS ML-DmBG2-c2  (1127) tumorous blood cells mbn2  (648) ovary fGS/OSS  (2745) ovary OSC  (2765) ovary OSS  (2446) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (1466) Schneider line 2 Sg4  (1034) embryonic 1182-4H  (989) embryonic GM2  (660) embryonic Kc167  (775) embryonic S1  (1531) embryonic S3  (1356) leg disc CME L1  (1907) wing disc CME-W2  (1579) wing disc ML-DmD8  (2018) wing disc ML-DmD9  (1554) wing disc ML-DmD16-c3  (2412) wing disc ML-DmD21  (1752) wing disc ML-DmD32  (1465) haltere disc ML-DmD17-c3  (2643) eye-antennal disc ML-DmD11  (1334) antennal disc ML-DmD20-c5  (1222) mixed discs ML-DmD4-c1  (1762) CNS ML-DmBG1-c1  (2682) CNS ML-DmBG2-c2  (1127) tumorous blood cells mbn2  (648) ovary fGS/OSS  (2745) ovary OSC  (2765) ovary OSS  (2446) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    1466 Schneider line 2 Sg4    1034 embryonic 1182-4H    989 embryonic GM2    660 embryonic Kc167    775 embryonic S1    1531 embryonic S3    1356 leg disc CME L1    1907 wing disc CME-W2    1579 wing disc ML-DmD8    2018 wing disc ML-DmD9    1554 wing disc ML-DmD16-c3    2412 wing disc ML-DmD21    1752 wing disc ML-DmD32    1465 haltere disc ML-DmD17-c3    2643 eye-antennal disc ML-DmD11    1334 antennal disc ML-DmD20-c5    1222 mixed discs ML-DmD4-c1    1762 CNS ML-DmBG1-c1    2682 CNS ML-DmBG2-c2    1127 tumorous blood cells mbn2    648 ovary fGS/OSS    2745 ovary OSC    2765 ovary OSS    2446 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    1442 cold shock, 4-day adult    1078 heat shock, 4-day adult    863 Cadmium 50 mM 6 hrs, larvae L3    400 Cadmium 50 mM 12 hrs, larvae L3    617 Cadmium 50 mM 48 hrs, 4-day adult    1096 Cadmium 100 mM 48 hrs, 4-day adult    1936 Copper 0.5 mM 12 hrs, larvae L3    1034 Copper 15 mM 48 hrs, 4-day adult    2302 Zinc 5 mM 12 hrs, larvae L3    1250 Zinc 4.5 mM 48 hrs, 4-day adult    1460 Ethanol 2.5% 3 hrs, larvae L3    971 Ethanol 5% 3 hrs, larvae L3    394 Ethanol 10% 3 hrs, larvae L3    500 Caffeine 1.5 mg/ml 4 hrs, larvae L3    320 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2063 Caffeine 25 mg/ml 48 hrs, 4-day adult    1457 Paraquat 5 mM 48 hrs, 4-day adult    1498 Paraquat 10 mM 48 hrs, 4-day adult    848 Rotenone 2 μg 12 hrs, larvae L3    531 Rotenone 8 μg 12 hrs, larvae L3    317 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (1442) cold shock, 4-day adult  (1078) heat shock, 4-day adult  (863) Cadmium 50 mM 6 hrs, larvae L3  (400) Cadmium 50 mM 12 hrs, larvae L3  (617) Cadmium 50 mM 48 hrs, 4-day adult  (1096) Cadmium 100 mM 48 hrs, 4-day adult  (1936) Copper 0.5 mM 12 hrs, larvae L3  (1034) Copper 15 mM 48 hrs, 4-day adult  (2302) Zinc 5 mM 12 hrs, larvae L3  (1250) Zinc 4.5 mM 48 hrs, 4-day adult  (1460) Ethanol 2.5% 3 hrs, larvae L3  (971) Ethanol 5% 3 hrs, larvae L3  (394) Ethanol 10% 3 hrs, larvae L3  (500) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (320) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (2063) Caffeine 25 mg/ml 48 hrs, 4-day adult  (1457) Paraquat 5 mM 48 hrs, 4-day adult  (1498) Paraquat 10 mM 48 hrs, 4-day adult  (848) Rotenone 2 μg 12 hrs, larvae L3  (531) Rotenone 8 μg 12 hrs, larvae L3  (317) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (1442) cold shock, 4-day adult  (1078) heat shock, 4-day adult  (863) Cadmium 50 mM 6 hrs, larvae L3  (400) Cadmium 50 mM 12 hrs, larvae L3  (617) Cadmium 50 mM 48 hrs, 4-day adult  (1096) Cadmium 100 mM 48 hrs, 4-day adult  (1936) Copper 0.5 mM 12 hrs, larvae L3  (1034) Copper 15 mM 48 hrs, 4-day adult  (2302) Zinc 5 mM 12 hrs, larvae L3  (1250) Zinc 4.5 mM 48 hrs, 4-day adult  (1460) Ethanol 2.5% 3 hrs, larvae L3  (971) Ethanol 5% 3 hrs, larvae L3  (394) Ethanol 10% 3 hrs, larvae L3  (500) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (320) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (2063) Caffeine 25 mg/ml 48 hrs, 4-day adult  (1457) Paraquat 5 mM 48 hrs, 4-day adult  (1498) Paraquat 10 mM 48 hrs, 4-day adult  (848) Rotenone 2 μg 12 hrs, larvae L3  (531) Rotenone 8 μg 12 hrs, larvae L3  (317) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    1442 cold shock, 4-day adult    1078 heat shock, 4-day adult    863 Cadmium 50 mM 6 hrs, larvae L3    400 Cadmium 50 mM 12 hrs, larvae L3    617 Cadmium 50 mM 48 hrs, 4-day adult    1096 Cadmium 100 mM 48 hrs, 4-day adult    1936 Copper 0.5 mM 12 hrs, larvae L3    1034 Copper 15 mM 48 hrs, 4-day adult    2302 Zinc 5 mM 12 hrs, larvae L3    1250 Zinc 4.5 mM 48 hrs, 4-day adult    1460 Ethanol 2.5% 3 hrs, larvae L3    971 Ethanol 5% 3 hrs, larvae L3    394 Ethanol 10% 3 hrs, larvae L3    500 Caffeine 1.5 mg/ml 4 hrs, larvae L3    320 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2063 Caffeine 25 mg/ml 48 hrs, 4-day adult    1457 Paraquat 5 mM 48 hrs, 4-day adult    1498 Paraquat 10 mM 48 hrs, 4-day adult    848 Rotenone 2 μg 12 hrs, larvae L3    531 Rotenone 8 μg 12 hrs, larvae L3    317 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    1442 cold shock, 4-day adult    1078 heat shock, 4-day adult    863 Cadmium 50 mM 6 hrs, larvae L3    400 Cadmium 50 mM 12 hrs, larvae L3    617 Cadmium 50 mM 48 hrs, 4-day adult    1096 Cadmium 100 mM 48 hrs, 4-day adult    1936 Copper 0.5 mM 12 hrs, larvae L3    1034 Copper 15 mM 48 hrs, 4-day adult    2302 Zinc 5 mM 12 hrs, larvae L3    1250 Zinc 4.5 mM 48 hrs, 4-day adult    1460 Ethanol 2.5% 3 hrs, larvae L3    971 Ethanol 5% 3 hrs, larvae L3    394 Ethanol 10% 3 hrs, larvae L3    500 Caffeine 1.5 mg/ml 4 hrs, larvae L3    320 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2063 Caffeine 25 mg/ml 48 hrs, 4-day adult    1457 Paraquat 5 mM 48 hrs, 4-day adult    1498 Paraquat 10 mM 48 hrs, 4-day adult    848 Rotenone 2 μg 12 hrs, larvae L3    531 Rotenone 8 μg 12 hrs, larvae L3    317 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (1442) cold shock, 4-day adult  (1078) heat shock, 4-day adult  (863) Cadmium 50 mM 6 hrs, larvae L3  (400) Cadmium 50 mM 12 hrs, larvae L3  (617) Cadmium 50 mM 48 hrs, 4-day adult  (1096) Cadmium 100 mM 48 hrs, 4-day adult  (1936) Copper 0.5 mM 12 hrs, larvae L3  (1034) Copper 15 mM 48 hrs, 4-day adult  (2302) Zinc 5 mM 12 hrs, larvae L3  (1250) Zinc 4.5 mM 48 hrs, 4-day adult  (1460) Ethanol 2.5% 3 hrs, larvae L3  (971) Ethanol 5% 3 hrs, larvae L3  (394) Ethanol 10% 3 hrs, larvae L3  (500) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (320) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (2063) Caffeine 25 mg/ml 48 hrs, 4-day adult  (1457) Paraquat 5 mM 48 hrs, 4-day adult  (1498) Paraquat 10 mM 48 hrs, 4-day adult  (848) Rotenone 2 μg 12 hrs, larvae L3  (531) Rotenone 8 μg 12 hrs, larvae L3  (317) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (1442) cold shock, 4-day adult  (1078) heat shock, 4-day adult  (863) Cadmium 50 mM 6 hrs, larvae L3  (400) Cadmium 50 mM 12 hrs, larvae L3  (617) Cadmium 50 mM 48 hrs, 4-day adult  (1096) Cadmium 100 mM 48 hrs, 4-day adult  (1936) Copper 0.5 mM 12 hrs, larvae L3  (1034) Copper 15 mM 48 hrs, 4-day adult  (2302) Zinc 5 mM 12 hrs, larvae L3  (1250) Zinc 4.5 mM 48 hrs, 4-day adult  (1460) Ethanol 2.5% 3 hrs, larvae L3  (971) Ethanol 5% 3 hrs, larvae L3  (394) Ethanol 10% 3 hrs, larvae L3  (500) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (320) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (2063) Caffeine 25 mg/ml 48 hrs, 4-day adult  (1457) Paraquat 5 mM 48 hrs, 4-day adult  (1498) Paraquat 10 mM 48 hrs, 4-day adult  (848) Rotenone 2 μg 12 hrs, larvae L3  (531) Rotenone 8 μg 12 hrs, larvae L3  (317) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    1442 cold shock, 4-day adult    1078 heat shock, 4-day adult    863 Cadmium 50 mM 6 hrs, larvae L3    400 Cadmium 50 mM 12 hrs, larvae L3    617 Cadmium 50 mM 48 hrs, 4-day adult    1096 Cadmium 100 mM 48 hrs, 4-day adult    1936 Copper 0.5 mM 12 hrs, larvae L3    1034 Copper 15 mM 48 hrs, 4-day adult    2302 Zinc 5 mM 12 hrs, larvae L3    1250 Zinc 4.5 mM 48 hrs, 4-day adult    1460 Ethanol 2.5% 3 hrs, larvae L3    971 Ethanol 5% 3 hrs, larvae L3    394 Ethanol 10% 3 hrs, larvae L3    500 Caffeine 1.5 mg/ml 4 hrs, larvae L3    320 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2063 Caffeine 25 mg/ml 48 hrs, 4-day adult    1457 Paraquat 5 mM 48 hrs, 4-day adult    1498 Paraquat 10 mM 48 hrs, 4-day adult    848 Rotenone 2 μg 12 hrs, larvae L3    531 Rotenone 8 μg 12 hrs, larvae L3    317 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_06 mE1_20_mRNA_expression_cluster_10
External Data & Images
Linkouts	BDGP expression data • GM14667 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0034802 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3800-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG3800 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG3800EY09816 viable, with Scer\GAL4pnr-MD237 CG3800GD7370 Sterility Allele fertile CG3800EY09816 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 CG3800GD7370 Phenotype manifest in Allele mesothoracic tergum, with Scer\GAL4pnr-MD237 CG3800GD7370 trichogen cell, with Scer\GAL4pnr-MD237 CG3800GD7370
Classical Alleles ( 9 )
For All Classical Alleles Show
Allele of CG3800 Class Mutagen Stocks Known lesion CG3800CB-0333-3 1 -- CG3800EY09816 P-element activity 1 -- CG3800KG05669 1 -- CG3800NP5198 1 -- CG38005-HA-1045 0 -- CG3800d07636 P-element activity 0 -- CG3800DG17106 0 -- CG3800EP1157 P-element activity 0 Yes CG3800KG05681a 0 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG3800 Class Mutagen Stocks Known lesion CG3800GD7370 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG3800KK107572 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel7176 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD7370} NA P{KK107572} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}CG9849EP1157 NA P{EP}EP1126 NA P{EPgy2}CG3800EY09816 NA P{Mae-UAS.6.11}B0319B0319 NA P{XP}CG3800d07636 NA miscellaneous insertions P{RS3}CG3800CB-0333-3 NA P{RS5}CG38005-HA-1045 NA P{SUPor-P}CG3800KG05669 NA P{SUPor-P}CG3800KG05681a NA P{wHy}CG3800DG17106 NA insertion of enhancer trap P{lacW}l(2)SH2350SH2350 No insertion of enhancer trap binary system P{GawB}CG3800NP5198 No
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
	There is no information supporting a biological process or cellular component term for this gene. (Based on a review of available data on: 2009-05-29)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
nucleic acid binding inferred from sequence or structural similarity with UniProtKB:P53996 AND non-traceable author statement (FlyBase, 1992-) zinc ion binding inferred from electronic annotation with InterPro:IPR001878, InterPro:IPR013084 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG3800 - Acp65Aa anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - Bx42 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG10465 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG10830 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG1115 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG11279 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG13532 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG14879 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG2182 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG3198 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG32649 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG3967 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG5028 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG5382 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG5445 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG5482 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG5660 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG5776 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG5805 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG8602 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG8888 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG8993 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG9222 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG9386 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CG9634 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CkIIα-i3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - Cpr11A anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - CrebA anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - Gadd34 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - Hcs anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - IM10 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - Jon99Ci anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - ND75 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - Obp83g anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - Pis anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - Rpn9 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - Skp2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - Su(var)2-10 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - boly anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - dpr5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - fh anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - gcl anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - kuk anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - l(3)02640 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - lin-28 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - skpA anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3800 - slow anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG3800 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 63255 DroID - A comprehensive database of gene and protein interactions. • FBgn0034802 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37646
Orthologs
OrthoDB Orthologs (31) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6Z638M Dipteran inclusive ortholog search EOG6J6S17 Insect inclusive ortholog search EOG6C86PW Arthropod inclusive ortholog search EOG6PC88H Metazoa inclusive ortholog search EOG66MQD9
Orthologs in Drosophila Species (EOG6Z638M)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG3800     Drosophila pseudoobscura pseudoobscura   Dpse\GA17695 Y
Orthologs in non-Drosophila Dipterans (EOG6J6S17)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL017419   Anopheles gambiae Malaria mosquito  Agam\AGAP008075   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ801741
Orthologs in non-Dipteran Insects (EOG6C86PW)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC725076   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG000341   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH14107   Atta cephalotes Leafcutter ant  Acep\ACEP27255   Camponotus floridanus Florida carpenter ant  Cflo\CFLO15649   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL18309   Pogonomyrmex barbatus Red harvester ant  Pbar\PB11316   Solenopsis invicta Red fire ant  Sinv\SINV23868   Acyrthosiphon pisum Pea aphid  Apim\ACYPI000340   Bombyx mori Silkmoth  Bmor\BGIBMGA004191   Pediculus humanus Human body louse  Phum\PHUM422420
Orthologs in non-Insect Arthropods (EOG6PC88H)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_273209   Ixodes scapularis Deer tick  Isca\ISCW007353   Ixodes scapularis Deer tick  Isca\ISCW015449
Orthologs in non-Arthropod Metazoa (EOG66MQD9)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\K08D12.3   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_006836gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_027940gn   Danio rerio Zebrafish  Drer\zff9   Danio rerio Zebrafish  Drer\cnbp   Xenopus tropicalis Western clawed frog  Xtro\cnbp   Gallus gallus Domestic chicken  Ggal\CNBP   Mus musculus House mouse  Mmus\Cnbp   Mus musculus House mouse  Mmus\Zcchc13   Rattus norvegicus Norway rat  Rnor\Cnbp   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000037049   Homo sapiens Human  Hsap\ENSG00000169714
Human Orthologs (1)
Gene OMIM HGNC Hsap\ENSG00000169714
AAA Orthologs (1) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila pseudoobscura pseudoobscura Dpse\GA17695
Stocks & Reagents
Stocks Listed in FlyBase ( 7 )
Bloomington	14448 y1; P{SUPor-P}CG3800KG05669 19962 y1 w67c23; P{EPgy2}CG3800EY09816
Kyoto	123131 w1118; P{RS3}CG3800CB-0333-3 104894 y* w*; P{GawB}CG3800NP5198 / CyO, P{UAS-lacZ.UW14}UW14
VDRC	v108342 P{KK107572}VIE-260B v16283 w1118 P{GD7370}v16283 v16284 w1118; P{GD7370}v16284
Genomic Clones ( 2 )
	BACR09K23 BACR37H13 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 234 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM14667 LD48005
Other clones	IP22037
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT01503 AT02331 AT02758 AT04195 AT05888 AT07988 AT10528 AT12255 AT17315 AT20879 AT22115 AT23316 AT26663 AT28830 AT29873 GH05928 GH11626 GH22058 GH22753 GH28039 GH28734 GM01709 GM05374 GM06066 GM06241 GM09682 GM10282 GM10594 GM10916 GM10927 GM15439 GM17480 GM18525 GM18551 GM19082 GM20491 GM20852 GM25262 GM26776 GM27492 GM28325 GM28522 GM32138 GM32608 LP01729 LP03427 LP05046 LP10570 LP11592 LP13594 LP15747 LP17559 LP20472 LP20572 LP22525 LP22821 RE02288 RE02309 RE08221 RE13351 RE14092 RE14456 RE20788 RE32631 RE35517 RE36977 RE38910 RE39931 RE40765 RE43375 RE44242 RE45173 RE45805 RE46080 RE47148 RE48770 RE50670 RE57504 RE60486 RE63375 RE66668 RE69783 RE74119 RH13864 RH29563 RH50811 RH55001 RH60450 RH71923 SD11078 SD15628 SD15704
Other clones	7114 10921 17463 29519 31095 37458 63315 64841 70154 79888 98031 100446 106968 118980 119268 120644 147395 160223 162976 163917 179898 191604 524659 524720 533981 558031 569564 569878 AA433246 AT01703 bs01c09 bs17c05 bs72b05 CK01.12D.F1 CK01.37B.E5 CK01.64B.C2 Dmel_dig_002925_0706_1496 Dmel_dig_005813_0625_1190 Dmel_dig_006426_0652_2167 Dmel_dig_006758_0631_0544 Dmel_dig_007940_0614_2560 Dmel_dig_009609_0591_3597 Dmel_dig_012328_0651_2831 Dmel_dig_012540_0641_1225 Dmel_dig_014008_0614_1101 Dmel_dig_014398_0596_1434 Dmel_dig_014717_0652_0821 Dmel_dig_016334_0597_1133 Dmel_dig_016429_0616_0821 Dmel_dig_016891_0587_1335 Dmel_dig_018698_0629_2880 Dmel_dig_019292_0692_2070 Dmel_neb_008540_0838_2195 Dmel_neb_010444_0115_2655 Dmel_neb_012294_0086_0589 Dmel_neb_012399_0615_2475 Dmel_neb_012406_0701_1755 Dmel_neb_012428_0679_2031 Dmel_neb_013151_0835_0509 Dmel_neb_013178_0670_3294 Dmel_neb_013482_0588_0955 Dmel_neb_013817_0935_1968 Dmel_neb_014010_0318_3132 Dmel_neb_014724_0641_0610 Dmel_neb_015253_0884_2253 Dmel_neb_015909_0624_1181 EC00985 EC01285 EC39543 EC40068 EC053286 EK051842 EK052231 EK065041 EK125306 EK125327 EK129764 EK140461 EK155721 EK191622 EK197063 EK223161 EK227104 EK238415 EK244435 EK249943 EK267905 EK268328 EK284512 EK294152 EN05644 EN05742 EN05813 EN09952 EN12849 EN15141 EN15810 FGC010C03 FGC016E08 FGC033H08 FGH108F07 FGM003E12 FGM104D02 FGM227B08 FGM232D11 FGM310E01 FGX002A01 FGX002A03 GM06560 IP08035 IP08135 IP10036 IP14906 IP15006 IP15106 IP17842 LP07744 RP003003742 RP003006309 RP003011007 RP003046011 RP003080026 RP003146634 RP003172942 RP003176689 RP003190585 RP003254423 RP003272894 RP003368556 RP003436929 RP003500080 RP003503856 RP003595754 UT01039 UT01377 UT01913 UUGC0235 UUGC0563 UUGC1046
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0034802 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37646
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG3800 anon-EST:fe1B4 (FlyBase, 1996-) Source for merge of: CG3800 anon-EST:fe2B6 (Bayraktaroglu, 2000.11.2) Source for merge of: CG3800 BEST:GM06241 (Rana, 2004.7.8)
Additional comments
Other Comments
	Accession number was AE003459; AAF46931.
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_137895 NM_001202063 RefSeq (Proteins) • NP_611739 NP_001188992 DDBJ / EMBL / GenBank • AA433198 AA433246 AA802741 AA821136 AAL68216 AAM49965 AAN16117 ADV37238 AI108006 AI546431 AI944429 AI945822 AW941398 AW943952 AY075371 AY118596 CL632197 CZ475850 Entrez Gene - A searchable database of RefSeq genes. • 37646 UniProtKB/Swiss-Prot • Q8T8R1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, CCHC-type (IPR001878) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GM14667
Linkouts
	BioGRID - A database of protein and genetic interactions • 63255 DroID - A comprehensive database of gene and protein interactions. • FBgn0034802 DRSC - Results from RNAi screens. • FBgn0034802 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0034802 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3800-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0034802 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37646 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37646 modMine - Data generated by the modENCODE project. • FBgn0034802
Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym	anon-EST:fe1B4   anon-EST:fe2B6   BEST:GM06241   CG3800 (Grieder et al., 2007, Keleman et al., 2009.8.5, Haussmann et al., 2008, Cammarato et al., 2011) CG11716 (Mount, 2001.8.14, ) unnamed (Schmid and Tautz, 1997)
Name Synonym	anon-fast-evolving-1B4   anon-fast-evolving-2B6
Secondary FlyBase IDs
	FBgn0025228 FBgn0025268 FBgn0034801 FBgn0045797
References ( 28 )
Generate a list of	All references relating to this gene ( 28 )
List References by type	Research paper  ( 3 ) Supplementary material  ( 7 ) Personal communication to FlyBase  ( 13 ) FlyBase analysis  ( 4 ) Website  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...