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Gene Dmel\CG3907

General Information
Symbol	Dmel\CG3907	Species	D. melanogaster
Name		Annotation symbol	CG3907
Feature type	protein_coding_gene	FlyBase ID	FBgn0034958
Gene Model Status	Current	Stock availability	1 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	60B3-60B4	Sequence location	2R:19,907,421..19,909,779 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG3907 (FBgn0034958). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in adult male stages. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult central nervous system, adult crop, larval midgut, adult salivary gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval salivary gland, larval trachea, adult spermathecae, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1623013_s_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG3907. Gene sequence location is 2R:19907421..19909779.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 60B3-60B4   Limits computationally determined from genome sequence between P{lacW}Phmk07623&P{lacW}tsrk05633 and P{EP}EP503
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG3907 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG3907-RA FBtr0072196  NM_166647   1700   400 CG3907-RB FBtr0072195  NM_138026   1697   400
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG3907-PA   FBpp0072105   44.9   400   8.71     NP_726398   AAF47137 CG3907-PB   FBpp0072104   44.9   400   8.71     NP_611870   AAM68289
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA390477   AA538807   AA697469   AA699262   AE013599 AAF47137   AE013599 AAM68289   AI062392   AI257297   AI292604   AI518583   AI533483   AY231967   BF505125   BG636684   BI212657   BI213789   BI368363   BI635049   BI641681   BP554749   BT014663   CO182143   CO182845   CO188614   CO190291   CO283582   CO299916   CO302620   CO311476   EC069276   EC073255   EC213699   EC246241   GH750055   GH750273   GH751045   GH752783   GH753291   GH755220   GH755258   GH755644   GH756093   GH757434   GH758353   GH758569   GH770421   GH773935   GH774776   GH774939   GH775975   GH777428   GH781479   GH783099   GH784453   GH785399   GH787119   GH788098   GH788844   GH789295   GH790435   GH790663   GH790769   GH790806   GH793645   GH793714   GH794080   GH794263   GH796098   GH797421   GH798562   GH799367   GH800118   GH800255   GH800581   GH802881   GH802976   GH806837   GH813000   GH814865   GH815021   GH816350   GH819899   GH820461   GH821667   GH822281   GH822322   GH823109   GH823334   GH824437   GH826992   GH827076   GH827183   GH828665   GH829617   GH831793   GH833143   GH833594   GH835229   GH837258   GH838223   GH841471   GH843472   GH843615   GH845392   GH846573   GH847226   GH847967   GH847998   GH849918   GH850233   GH850473   GH851025   GH851468   GH853609   GH856179   GH856461   GH857823   GH863154   GH863395   GH864307   GH866007   GH866248   GH868449   GH869924   GH872168   GH872473   GH875477   GH879471   GH881163   GH881345   GH884473   GH885269   GH885295   GH887052   GH887275   GH888244   GH888781   GH888879   GH889283   GH890161   GH890329   GH891957   GH892624   GH892955   GH893305   GH894375   GH894808   GH895192   GH895634   GH895684   GH895977   GH898134   GH900693   GH900802   GH904593   GH905361   GH907958   GH908997   GH909042   GH909306   GH909741   GH910492   GH911643   GH914161   GH914970   GH916302   GH918130   GH918411   GH918681   GH919098   GH919286   GH921050   GH923168   GH923315   GH923685   GH925483   GH926461   GH927095   GH930266   GH930613   GH930951   GH932083   GH932174   GH933111   GH933527   GH933862   GH934326   GH934914   GH935464   GH936956   GH937446   GH938541   GH938975   GH939439
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q6IDE2
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult central nervous system, adult crop, larval midgut, adult salivary gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval salivary gland, larval trachea, adult spermathecae, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    367.375 Larval Midgut    630.5 Larval Hindgut    348.2 Larval Malpighian Tubules    421.3 Larval Fat Body    231.4 Larval Salivary Gland    219.9 Larval Trachea    304.525 Larval Carcass    347.8 Adult Head    374.3 Adult Eye    428.325 Adult Brain    641.7 Adult Thoracic-Abdominal Ganglion    697.3 Adult Crop    734.3 Adult Midgut    412.8 Adult Hindgut    391.6 Adult Malpighian Tubules    327 Adult Fat Body    287.5 Adult Salivary Gland    736.1 Adult Heart    439.175 Adult VirginFemale Spermatheca    231.8 Adult InseminatedFemale Spermatheca    250.8 Adult Ovary    47.9 Adult Testis    93.1 Adult Male Accessory Gland    456.5 Adult Carcass    293.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    367.375 Larval Midgut  (630.5) Larval Hindgut    348.2 Larval Malpighian Tubules    421.3 Larval Fat Body    231.4 Larval Salivary Gland    219.9 Larval Trachea    304.525 Larval Carcass    347.8 Adult Head    374.3 Adult Eye    428.325 Adult Brain  (641.7) Adult Thoracic-Abdominal Ganglion  (697.3) Adult Crop  (734.3) Adult Midgut    412.8 Adult Hindgut    391.6 Adult Malpighian Tubules    327 Adult Fat Body    287.5 Adult Salivary Gland  (736.1) Adult Heart    439.175 Adult VirginFemale Spermatheca    231.8 Adult InseminatedFemale Spermatheca    250.8 Adult Ovary    47.9 Adult Testis    93.1 Adult Male Accessory Gland    456.5 Adult Carcass    293.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    367.375 Larval Midgut    630.5 Larval Hindgut    348.2 Larval Malpighian Tubules    421.3 Larval Fat Body    231.4 Larval Salivary Gland    219.9 Larval Trachea    304.525 Larval Carcass    347.8 Adult Head    374.3 Adult Eye    428.325 Adult Brain    641.7 Adult Thoracic-Abdominal Ganglion    697.3 Adult Crop    734.3 Adult Midgut    412.8 Adult Hindgut    391.6 Adult Malpighian Tubules    327 Adult Fat Body    287.5 Adult Salivary Gland    736.1 Adult Heart    439.175 Adult VirginFemale Spermatheca    231.8 Adult InseminatedFemale Spermatheca    250.8 Adult Ovary    47.9 Adult Testis    93.1 Adult Male Accessory Gland    456.5 Adult Carcass    293.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    367.375 Larval Midgut    630.5 Larval Hindgut    348.2 Larval Malpighian Tubules    421.3 Larval Fat Body    231.4 Larval Salivary Gland    219.9 Larval Trachea    304.525 Larval Carcass    347.8 Adult Head    374.3 Adult Eye    428.325 Adult Brain    641.7 Adult Thoracic-Abdominal Ganglion    697.3 Adult Crop    734.3 Adult Midgut    412.8 Adult Hindgut    391.6 Adult Malpighian Tubules    327 Adult Fat Body    287.5 Adult Salivary Gland    736.1 Adult Heart    439.175 Adult VirginFemale Spermatheca    231.8 Adult InseminatedFemale Spermatheca    250.8 Adult Ovary    47.9 Adult Testis    93.1 Adult Male Accessory Gland    456.5 Adult Carcass    293.7 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    367.375 Larval Midgut    630.5 Larval Hindgut    348.2 Larval Malpighian Tubules    421.3 Larval Fat Body    231.4 Larval Salivary Gland    219.9 Larval Trachea    304.525 Larval Carcass    347.8 Adult Head    374.3 Adult Eye    428.325 Adult Brain    641.7 Adult Thoracic-Abdominal Ganglion    697.3 Adult Crop    734.3 Adult Midgut    412.8 Adult Hindgut    391.6 Adult Malpighian Tubules    327 Adult Fat Body    287.5 Adult Salivary Gland    736.1 Adult Heart    439.175 Adult VirginFemale Spermatheca    231.8 Adult InseminatedFemale Spermatheca    250.8 Adult Ovary    47.9 Adult Testis    93.1 Adult Male Accessory Gland    456.5 Adult Carcass    293.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    367.375 Larval Midgut  630.5 Larval Hindgut    348.2 Larval Malpighian Tubules    421.3 Larval Fat Body    231.4 Larval Salivary Gland    219.9 Larval Trachea    304.525 Larval Carcass    347.8 Adult Head    374.3 Adult Eye    428.325 Adult Brain  641.7 Adult Thoracic-Abdominal Ganglion  697.3 Adult Crop  734.3 Adult Midgut    412.8 Adult Hindgut    391.6 Adult Malpighian Tubules    327 Adult Fat Body    287.5 Adult Salivary Gland  736.1 Adult Heart    439.175 Adult VirginFemale Spermatheca    231.8 Adult InseminatedFemale Spermatheca    250.8 Adult Ovary    47.9 Adult Testis    93.1 Adult Male Accessory Gland    456.5 Adult Carcass    293.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    367.375 Larval Midgut    630.5 Larval Hindgut    348.2 Larval Malpighian Tubules    421.3 Larval Fat Body    231.4 Larval Salivary Gland    219.9 Larval Trachea    304.525 Larval Carcass    347.8 Adult Head    374.3 Adult Eye    428.325 Adult Brain    641.7 Adult Thoracic-Abdominal Ganglion    697.3 Adult Crop    734.3 Adult Midgut    412.8 Adult Hindgut    391.6 Adult Malpighian Tubules    327 Adult Fat Body    287.5 Adult Salivary Gland    736.1 Adult Heart    439.175 Adult VirginFemale Spermatheca    231.8 Adult InseminatedFemale Spermatheca    250.8 Adult Ovary    47.9 Adult Testis    93.1 Adult Male Accessory Gland    456.5 Adult Carcass    293.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    367.375 Larval Midgut    630.5 Larval Hindgut    348.2 Larval Malpighian Tubules    421.3 Larval Fat Body    231.4 Larval Salivary Gland    219.9 Larval Trachea    304.525 Larval Carcass    347.8 Adult Head    374.3 Adult Eye    428.325 Adult Brain    641.7 Adult Thoracic-Abdominal Ganglion    697.3 Adult Crop    734.3 Adult Midgut    412.8 Adult Hindgut    391.6 Adult Malpighian Tubules    327 Adult Fat Body    287.5 Adult Salivary Gland    736.1 Adult Heart    439.175 Adult VirginFemale Spermatheca    231.8 Adult InseminatedFemale Spermatheca    250.8 Adult Ovary    47.9 Adult Testis    93.1 Adult Male Accessory Gland    456.5 Adult Carcass    293.7 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    374.3   NA  Eye    428.325   NA  Brain    641.7   367.375  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    697.3   NA  Crop    734.3   630.5  Midgut    412.8   348.2  Hindgut    391.6   421.3  Malpighian Tubules    327   231.4  Fat Body    287.5   219.9  Salivary Gland    736.1   NA  Heart    439.175   304.525  Trachea    NA   NA  VirginFemale Spermatheca    231.8   NA  InseminatedFemale Spermatheca    250.8   NA  Ovary    47.9   NA  Testis    93.1   NA  Male Accessory Gland    456.5   347.8  Carcass    293.7 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    44 central nervous system, pupae P8    52 head, virgin 1-day female    43 head, virgin 4-day female    40 head, virgin 20-day female    30 head, mated 1-day female    38 head, mated 4-day female    37 head, mated 20-day female    33 head, mated 1-day male    64 head, mated 4-day male    67 head, mated 20-day male    63 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    39 digestive system, larvae L3 wandering    79 digestive system, 1-day adult    41 digestive system, 4-day adult    39 digestive system, 20-day adult    33 fat body, larvae L3 wandering    20 fat body, white prepupae    36 fat body, pupae P8    29 carcass, larvae L3 wandering    60 carcass, 1-day adult    24 carcass, 4-day adult    28 carcass, 20-day adult    32 ovary, virgin 4-day female    9 ovary, mated 4-day female    8 testis, mated 4-day male    14 accessory gland, mated 4-day male    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  26 central nervous system, larvae L3  (44) central nervous system, pupae P8  (52) head, virgin 1-day female  (43) head, virgin 4-day female  (40) head, virgin 20-day female  (30) head, mated 1-day female  (38) head, mated 4-day female  (37) head, mated 20-day female  (33) head, mated 1-day male  (64) head, mated 4-day male  (67) head, mated 20-day male  (63) salivary gland, larvae L3 wandering    10 salivary gland, white prepupae  (39) digestive system, larvae L3 wandering  (79) digestive system, 1-day adult  (41) digestive system, 4-day adult  (39) digestive system, 20-day adult  (33) fat body, larvae L3 wandering    20 fat body, white prepupae  (36) fat body, pupae P8  (29) carcass, larvae L3 wandering  (60) carcass, 1-day adult    24 carcass, 4-day adult  (28) carcass, 20-day adult  (32) ovary, virgin 4-day female    9 ovary, mated 4-day female    8 testis, mated 4-day male    14 accessory gland, mated 4-day male    24 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    44 central nervous system, pupae P8    52 head, virgin 1-day female    43 head, virgin 4-day female    40 head, virgin 20-day female    30 head, mated 1-day female    38 head, mated 4-day female    37 head, mated 20-day female    33 head, mated 1-day male    64 head, mated 4-day male    67 head, mated 20-day male    63 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    39 digestive system, larvae L3 wandering    79 digestive system, 1-day adult    41 digestive system, 4-day adult    39 digestive system, 20-day adult    33 fat body, larvae L3 wandering    20 fat body, white prepupae    36 fat body, pupae P8    29 carcass, larvae L3 wandering    60 carcass, 1-day adult    24 carcass, 4-day adult    28 carcass, 20-day adult    32 ovary, virgin 4-day female    9 ovary, mated 4-day female    8 testis, mated 4-day male    14 accessory gland, mated 4-day male    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    44 central nervous system, pupae P8    52 head, virgin 1-day female    43 head, virgin 4-day female    40 head, virgin 20-day female    30 head, mated 1-day female    38 head, mated 4-day female    37 head, mated 20-day female    33 head, mated 1-day male    64 head, mated 4-day male    67 head, mated 20-day male    63 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    39 digestive system, larvae L3 wandering    79 digestive system, 1-day adult    41 digestive system, 4-day adult    39 digestive system, 20-day adult    33 fat body, larvae L3 wandering    20 fat body, white prepupae    36 fat body, pupae P8    29 carcass, larvae L3 wandering    60 carcass, 1-day adult    24 carcass, 4-day adult    28 carcass, 20-day adult    32 ovary, virgin 4-day female    9 ovary, mated 4-day female    8 testis, mated 4-day male    14 accessory gland, mated 4-day male    24 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    44 central nervous system, pupae P8    52 head, virgin 1-day female    43 head, virgin 4-day female    40 head, virgin 20-day female    30 head, mated 1-day female    38 head, mated 4-day female    37 head, mated 20-day female    33 head, mated 1-day male    64 head, mated 4-day male    67 head, mated 20-day male    63 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    39 digestive system, larvae L3 wandering    79 digestive system, 1-day adult    41 digestive system, 4-day adult    39 digestive system, 20-day adult    33 fat body, larvae L3 wandering    20 fat body, white prepupae    36 fat body, pupae P8    29 carcass, larvae L3 wandering    60 carcass, 1-day adult    24 carcass, 4-day adult    28 carcass, 20-day adult    32 ovary, virgin 4-day female    9 ovary, mated 4-day female    8 testis, mated 4-day male    14 accessory gland, mated 4-day male    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  26 central nervous system, larvae L3  (44) central nervous system, pupae P8  (52) head, virgin 1-day female  (43) head, virgin 4-day female  (40) head, virgin 20-day female  30 head, mated 1-day female  (38) head, mated 4-day female  (37) head, mated 20-day female  (33) head, mated 1-day male  (64) head, mated 4-day male  (67) head, mated 20-day male  (63) salivary gland, larvae L3 wandering    10 salivary gland, white prepupae  (39) digestive system, larvae L3 wandering  (79) digestive system, 1-day adult  (41) digestive system, 4-day adult  (39) digestive system, 20-day adult  (33) fat body, larvae L3 wandering    20 fat body, white prepupae  (36) fat body, pupae P8  29 carcass, larvae L3 wandering  (60) carcass, 1-day adult    24 carcass, 4-day adult  28 carcass, 20-day adult  32 ovary, virgin 4-day female    9 ovary, mated 4-day female    8 testis, mated 4-day male    14 accessory gland, mated 4-day male    24 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    44 central nervous system, pupae P8    52 head, virgin 1-day female    43 head, virgin 4-day female    40 head, virgin 20-day female    30 head, mated 1-day female    38 head, mated 4-day female    37 head, mated 20-day female    33 head, mated 1-day male    64 head, mated 4-day male    67 head, mated 20-day male    63 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    39 digestive system, larvae L3 wandering    79 digestive system, 1-day adult    41 digestive system, 4-day adult    39 digestive system, 20-day adult    33 fat body, larvae L3 wandering    20 fat body, white prepupae    36 fat body, pupae P8    29 carcass, larvae L3 wandering    60 carcass, 1-day adult    24 carcass, 4-day adult    28 carcass, 20-day adult    32 ovary, virgin 4-day female    9 ovary, mated 4-day female    8 testis, mated 4-day male    14 accessory gland, mated 4-day male    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    44 central nervous system, pupae P8    52 head, virgin 1-day female    43 head, virgin 4-day female    40 head, virgin 20-day female    30 head, mated 1-day female    38 head, mated 4-day female    37 head, mated 20-day female    33 head, mated 1-day male    64 head, mated 4-day male    67 head, mated 20-day male    63 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    39 digestive system, larvae L3 wandering    79 digestive system, 1-day adult    41 digestive system, 4-day adult    39 digestive system, 20-day adult    33 fat body, larvae L3 wandering    20 fat body, white prepupae    36 fat body, pupae P8    29 carcass, larvae L3 wandering    60 carcass, 1-day adult    24 carcass, 4-day adult    28 carcass, 20-day adult    32 ovary, virgin 4-day female    9 ovary, mated 4-day female    8 testis, mated 4-day male    14 accessory gland, mated 4-day male    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    11 embryo 04-06hr    26 embryo 06-08hr    24 embryo 08-10hr    24 embryo 10-12hr    21 embryo 12-14hr    27 embryo 14-16hr    15 embryo 16-18hr    25 embryo 18-20hr    29 embryo 20-22hr    32 embryo 22-24hr    42 larva L1    21 larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    22 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    37 white prepupae new    40 white prepupae 12hr    36 white prepupae 24hr    27 pupae 2d postWPP    25 pupae 3d postWPP    18 pupae 4d postWPP    20 adult male 01day    26 adult male 05day    25 adult male 30day    20 adult female 01day    13 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    11 embryo 04-06hr  26 embryo 06-08hr    24 embryo 08-10hr    24 embryo 10-12hr    21 embryo 12-14hr  (27) embryo 14-16hr    15 embryo 16-18hr    25 embryo 18-20hr  (29) embryo 20-22hr  (32) embryo 22-24hr  (42) larva L1    21 larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    22 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9  (37) white prepupae new  (40) white prepupae 12hr  (36) white prepupae 24hr  (27) pupae 2d postWPP    25 pupae 3d postWPP    18 pupae 4d postWPP    20 adult male 01day  26 adult male 05day    25 adult male 30day    20 adult female 01day    13 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    11 embryo 04-06hr    26 embryo 06-08hr    24 embryo 08-10hr    24 embryo 10-12hr    21 embryo 12-14hr    27 embryo 14-16hr    15 embryo 16-18hr    25 embryo 18-20hr    29 embryo 20-22hr    32 embryo 22-24hr    42 larva L1    21 larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    22 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    37 white prepupae new    40 white prepupae 12hr    36 white prepupae 24hr    27 pupae 2d postWPP    25 pupae 3d postWPP    18 pupae 4d postWPP    20 adult male 01day    26 adult male 05day    25 adult male 30day    20 adult female 01day    13 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    11 embryo 04-06hr    26 embryo 06-08hr    24 embryo 08-10hr    24 embryo 10-12hr    21 embryo 12-14hr    27 embryo 14-16hr    15 embryo 16-18hr    25 embryo 18-20hr    29 embryo 20-22hr    32 embryo 22-24hr    42 larva L1    21 larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    22 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    37 white prepupae new    40 white prepupae 12hr    36 white prepupae 24hr    27 pupae 2d postWPP    25 pupae 3d postWPP    18 pupae 4d postWPP    20 adult male 01day    26 adult male 05day    25 adult male 30day    20 adult female 01day    13 adult female 05day    12 adult female 30day    13 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    11 embryo 04-06hr    26 embryo 06-08hr    24 embryo 08-10hr    24 embryo 10-12hr    21 embryo 12-14hr    27 embryo 14-16hr    15 embryo 16-18hr    25 embryo 18-20hr    29 embryo 20-22hr    32 embryo 22-24hr    42 larva L1    21 larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    22 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    37 white prepupae new    40 white prepupae 12hr    36 white prepupae 24hr    27 pupae 2d postWPP    25 pupae 3d postWPP    18 pupae 4d postWPP    20 adult male 01day    26 adult male 05day    25 adult male 30day    20 adult female 01day    13 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    11 embryo 04-06hr  26 embryo 06-08hr    24 embryo 08-10hr    24 embryo 10-12hr    21 embryo 12-14hr  27 embryo 14-16hr    15 embryo 16-18hr    25 embryo 18-20hr  29 embryo 20-22hr  32 embryo 22-24hr  (42) larva L1    21 larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    22 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9  (37) white prepupae new  (40) white prepupae 12hr  (36) white prepupae 24hr  27 pupae 2d postWPP    25 pupae 3d postWPP    18 pupae 4d postWPP    20 adult male 01day  26 adult male 05day    25 adult male 30day    20 adult female 01day    13 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    11 embryo 04-06hr    26 embryo 06-08hr    24 embryo 08-10hr    24 embryo 10-12hr    21 embryo 12-14hr    27 embryo 14-16hr    15 embryo 16-18hr    25 embryo 18-20hr    29 embryo 20-22hr    32 embryo 22-24hr    42 larva L1    21 larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    22 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    37 white prepupae new    40 white prepupae 12hr    36 white prepupae 24hr    27 pupae 2d postWPP    25 pupae 3d postWPP    18 pupae 4d postWPP    20 adult male 01day    26 adult male 05day    25 adult male 30day    20 adult female 01day    13 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    11 embryo 04-06hr    26 embryo 06-08hr    24 embryo 08-10hr    24 embryo 10-12hr    21 embryo 12-14hr    27 embryo 14-16hr    15 embryo 16-18hr    25 embryo 18-20hr    29 embryo 20-22hr    32 embryo 22-24hr    42 larva L1    21 larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    22 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    37 white prepupae new    40 white prepupae 12hr    36 white prepupae 24hr    27 pupae 2d postWPP    25 pupae 3d postWPP    18 pupae 4d postWPP    20 adult male 01day    26 adult male 05day    25 adult male 30day    20 adult female 01day    13 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    107 Schneider line 2 Sg4    22 embryonic 1182-4H    49 embryonic GM2    89 embryonic Kc167    48 embryonic S1    84 embryonic S3    68 leg disc CME L1    35 wing disc CME-W2    45 wing disc ML-DmD8    39 wing disc ML-DmD9    40 wing disc ML-DmD16-c3    59 wing disc ML-DmD21    31 wing disc ML-DmD32    42 haltere disc ML-DmD17-c3    83 eye-antennal disc ML-DmD11    42 antennal disc ML-DmD20-c5    47 mixed discs ML-DmD4-c1    46 CNS ML-DmBG1-c1    65 CNS ML-DmBG2-c2    63 tumorous blood cells mbn2    103 ovary fGS/OSS    24 ovary OSC    32 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (107) Schneider line 2 Sg4    22 embryonic 1182-4H  (49) embryonic GM2  (89) embryonic Kc167  (48) embryonic S1  (84) embryonic S3  (68) leg disc CME L1  (35) wing disc CME-W2  (45) wing disc ML-DmD8  (39) wing disc ML-DmD9  (40) wing disc ML-DmD16-c3  (59) wing disc ML-DmD21  (31) wing disc ML-DmD32  (42) haltere disc ML-DmD17-c3  (83) eye-antennal disc ML-DmD11  (42) antennal disc ML-DmD20-c5  (47) mixed discs ML-DmD4-c1  (46) CNS ML-DmBG1-c1  (65) CNS ML-DmBG2-c2  (63) tumorous blood cells mbn2  (103) ovary fGS/OSS    24 ovary OSC  (32) ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  107 Schneider line 2 Sg4    22 embryonic 1182-4H    49 embryonic GM2    89 embryonic Kc167    48 embryonic S1    84 embryonic S3    68 leg disc CME L1    35 wing disc CME-W2    45 wing disc ML-DmD8    39 wing disc ML-DmD9    40 wing disc ML-DmD16-c3    59 wing disc ML-DmD21    31 wing disc ML-DmD32    42 haltere disc ML-DmD17-c3    83 eye-antennal disc ML-DmD11    42 antennal disc ML-DmD20-c5    47 mixed discs ML-DmD4-c1    46 CNS ML-DmBG1-c1    65 CNS ML-DmBG2-c2    63 tumorous blood cells mbn2  103 ovary fGS/OSS    24 ovary OSC    32 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    107 Schneider line 2 Sg4    22 embryonic 1182-4H    49 embryonic GM2    89 embryonic Kc167    48 embryonic S1    84 embryonic S3    68 leg disc CME L1    35 wing disc CME-W2    45 wing disc ML-DmD8    39 wing disc ML-DmD9    40 wing disc ML-DmD16-c3    59 wing disc ML-DmD21    31 wing disc ML-DmD32    42 haltere disc ML-DmD17-c3    83 eye-antennal disc ML-DmD11    42 antennal disc ML-DmD20-c5    47 mixed discs ML-DmD4-c1    46 CNS ML-DmBG1-c1    65 CNS ML-DmBG2-c2    63 tumorous blood cells mbn2    103 ovary fGS/OSS    24 ovary OSC    32 ovary OSS    18 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    107 Schneider line 2 Sg4    22 embryonic 1182-4H    49 embryonic GM2    89 embryonic Kc167    48 embryonic S1    84 embryonic S3    68 leg disc CME L1    35 wing disc CME-W2    45 wing disc ML-DmD8    39 wing disc ML-DmD9    40 wing disc ML-DmD16-c3    59 wing disc ML-DmD21    31 wing disc ML-DmD32    42 haltere disc ML-DmD17-c3    83 eye-antennal disc ML-DmD11    42 antennal disc ML-DmD20-c5    47 mixed discs ML-DmD4-c1    46 CNS ML-DmBG1-c1    65 CNS ML-DmBG2-c2    63 tumorous blood cells mbn2    103 ovary fGS/OSS    24 ovary OSC    32 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (107) Schneider line 2 Sg4    22 embryonic 1182-4H  (49) embryonic GM2  (89) embryonic Kc167  (48) embryonic S1  (84) embryonic S3  (68) leg disc CME L1  (35) wing disc CME-W2  (45) wing disc ML-DmD8  (39) wing disc ML-DmD9  (40) wing disc ML-DmD16-c3  (59) wing disc ML-DmD21  31 wing disc ML-DmD32  (42) haltere disc ML-DmD17-c3  (83) eye-antennal disc ML-DmD11  (42) antennal disc ML-DmD20-c5  (47) mixed discs ML-DmD4-c1  (46) CNS ML-DmBG1-c1  (65) CNS ML-DmBG2-c2  (63) tumorous blood cells mbn2  (103) ovary fGS/OSS    24 ovary OSC  32 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  107 Schneider line 2 Sg4    22 embryonic 1182-4H    49 embryonic GM2    89 embryonic Kc167    48 embryonic S1    84 embryonic S3    68 leg disc CME L1    35 wing disc CME-W2    45 wing disc ML-DmD8    39 wing disc ML-DmD9    40 wing disc ML-DmD16-c3    59 wing disc ML-DmD21    31 wing disc ML-DmD32    42 haltere disc ML-DmD17-c3    83 eye-antennal disc ML-DmD11    42 antennal disc ML-DmD20-c5    47 mixed discs ML-DmD4-c1    46 CNS ML-DmBG1-c1    65 CNS ML-DmBG2-c2    63 tumorous blood cells mbn2  103 ovary fGS/OSS    24 ovary OSC    32 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    107 Schneider line 2 Sg4    22 embryonic 1182-4H    49 embryonic GM2    89 embryonic Kc167    48 embryonic S1    84 embryonic S3    68 leg disc CME L1    35 wing disc CME-W2    45 wing disc ML-DmD8    39 wing disc ML-DmD9    40 wing disc ML-DmD16-c3    59 wing disc ML-DmD21    31 wing disc ML-DmD32    42 haltere disc ML-DmD17-c3    83 eye-antennal disc ML-DmD11    42 antennal disc ML-DmD20-c5    47 mixed discs ML-DmD4-c1    46 CNS ML-DmBG1-c1    65 CNS ML-DmBG2-c2    63 tumorous blood cells mbn2    103 ovary fGS/OSS    24 ovary OSC    32 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    10 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    45 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    34 Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3    37 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3    35 Rotenone 8 μg 12 hrs, larvae L3    21 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    10 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3  (45) Cadmium 50 mM 48 hrs, 4-day adult  (27) Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult  26 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3  (34) Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3  (37) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3  (35) Rotenone 8 μg 12 hrs, larvae L3    21 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    10 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    45 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    34 Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3    37 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3    35 Rotenone 8 μg 12 hrs, larvae L3    21 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    10 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    45 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    34 Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3    37 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3    35 Rotenone 8 μg 12 hrs, larvae L3    21 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    10 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    45 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    34 Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3    37 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3    35 Rotenone 8 μg 12 hrs, larvae L3    21 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    10 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3  (45) Cadmium 50 mM 48 hrs, 4-day adult  27 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult  26 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3  (34) Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3  (37) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3  (35) Rotenone 8 μg 12 hrs, larvae L3    21 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    10 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    45 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    34 Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3    37 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3    35 Rotenone 8 μg 12 hrs, larvae L3    21 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    10 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    45 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    10 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    34 Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3    37 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3    35 Rotenone 8 μg 12 hrs, larvae L3    21 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_25 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0034958 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3907-RB
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG3907GD2193 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG3907 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG3907 Class Mutagen Stocks Known lesion CG3907GD2193 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG3907NIG.3907R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel6080 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD2193} NA P{NIG.3907R} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG3907 - Arpc2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - CG10306 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - CG10641 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - CG11107 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - CG13321 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - CG4338 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - CG5746 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - CG7033 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - CkIIα experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) CG3907 - CkIIβ anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) CG3907 - Dek experimental knowledge based (Guruharsha et al., 2011) CG3907 - Eb1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - Gale anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - Hsc70-1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - Hsp68 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - LanB1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - Plod anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - Rab6 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - RpS12 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - Ugt anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - Zn72D anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - cpb anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - ctp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - eIF3-S8 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3907 - grsm anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG3907 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 63414 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0034958 DroID - A comprehensive database of gene and protein interactions. • FBgn0034958 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37832
Orthologs
OrthoDB Orthologs (26) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6907VX Dipteran inclusive ortholog search EOG6DFPX2 Insect inclusive ortholog search EOG6J6QMF Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6907VX)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG3907     Drosophila sechellia   Dsec\GM15478 Y   Drosophila erecta   Dere\GG19965 Y   Drosophila yakuba   Dyak\GE11497 Y   Drosophila ananassae   Dana\GF12041 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA17765 Y   Drosophila persimilis   Dper\GL10433 Y   Drosophila willistoni   Dwil\GK21380 Y   Drosophila virilis   Dvir\GJ20433 Y   Drosophila mojavensis   Dmoj\GI20690 Y   Drosophila grimshawi   Dgri\GH21716 Y
Orthologs in non-Drosophila Dipterans (EOG6DFPX2)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL011140   Anopheles gambiae Malaria mosquito  Agam\AGAP005780   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ005692
Orthologs in non-Dipteran Insects (EOG6J6QMF)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB43920   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006673   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH13741   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH13740   Atta cephalotes Leafcutter ant  Acep\ACEP23140   Camponotus floridanus Florida carpenter ant  Cflo\CFLO15260   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14911   Linepithema humile Argentine ant  Lhum\LH16737   Pogonomyrmex barbatus Red harvester ant  Pbar\PB22491   Solenopsis invicta Red fire ant  Sinv\SINV22232   Acyrthosiphon pisum Pea aphid  Apim\ACYPI007183   Pediculus humanus Human body louse  Phum\PHUM387410
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila sechellia Dsec\GM15478 Drosophila erecta Dere\GG19965 Drosophila yakuba Dyak\GE11497 Drosophila ananassae Dana\GF12041 Drosophila pseudoobscura pseudoobscura Dpse\GA17765 Drosophila persimilis Dper\GL10433 Drosophila willistoni Dwil\GK21380 Drosophila virilis Dvir\GJ20433 Drosophila mojavensis Dmoj\GI20690 Drosophila grimshawi Dgri\GH21716
Stocks & Reagents
Stocks Listed in FlyBase ( 1 )
VDRC	v13496 w1118; P{GD2193}v13496/TM3
Genomic Clones ( 1 )
	BACR28M05 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 192 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH07226
Other clones	DPiM_GH07226
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT07292 GH01574 GH15545 HL02556 HL08055 LD08751 LD18422 LD38179 LP05613 RE17780 RE19288 RE54323 SD02219 SD05322 SD14445 SD25217
Other clones	39551 59789 103101 CK01.49C.F9 EC22163 EC24128 EK041221 EK047708 EK163714 EK176916 EK184558 EK224658 FGM231E07 RP003009258 RP003030588 RP003033817 RP003034552 RP003050810 RP003068919 RP003080141 RP003087062 RP003089834 RP003090255 RP003098300 RP003107268 RP003109874 RP003117084 RP003134975 RP003135338 RP003143317 RP003147479 RP003147688 RP003151039 RP003151109 RP003153232 RP003157549 RP003158662 RP003160408 RP003164083 RP003169441 RP003169966 RP003170771 RP003175418 RP003178911 RP003181513 RP003184458 RP003185486 RP003205895 RP003208751 RP003211678 RP003212371 RP003214383 RP003219023 RP003223364 RP003230325 RP003231652 RP003235480 RP003241103 RP003242242 RP003245042 RP003250323 RP003253261 RP003256250 RP003259657 RP003261167 RP003263158 RP003268472 RP003269012 RP003269522 RP003274945 RP003279999 RP003280674 RP003285518 RP003289909 RP003291056 RP003292553 RP003301070 RP003307113 RP003311266 RP003313568 RP003315162 RP003317315 RP003330880 RP003331117 RP003335227 RP003336802 RP003338078 RP003343632 RP003343922 RP003371708 RP003379218 RP003391305 RP003392795 RP003396289 RP003401907 RP003411311 RP003416215 RP003423212 RP003424012 RP003436102 RP003446169 RP003450179 RP003459918 RP003460257 RP003467605 RP003470043 RP003474281 RP003477685 RP003478638 RP003478954 RP003480998 RP003482570 RP003485201 RP003490317 RP003493214 RP003493518 RP003495692 RP003504953 RP003506313 RP003506704 RP003508339 RP003513804 RP003521252 RP003521631 RP003523245 RP003524053 RP003527978 RP003531640 RP003536321 RP003537986 RP003541680 RP003542614 RP003544795 RP003549257 RP003550075 RP003556476 RP003560790 RP003564920 RP003565205 RP003565678 RP003567892 RP003582255 RP003587366 RP003587670 RP003589062 RP003593163 RP003595377 RP003602397 RP003604535 RP003608407 RP003608575 RP003609086 RP003611015 RP003611543 RP003624881 RP003628792 RP003630460 RP003632275 RP003633051 RP003636200 RP003639228 RP003639794 RP003643434 RP003643624 RP003643778 RP003650429 RP003656233 RP003667666 RP003669939 RP003675496 RP003676944 RP003679246 RP003679591 RP003681620
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0034958 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37832
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	FlyBase curator comment: the insertion in the "e03063" Exelixis line (PBac{RB}CG11388e03063) was originally assigned to the CG3907 gene in FBrf0179797, resulting in the "CG3907e03063" (FBal0161445) allele. However, FBrf0184340 shows that the insertion is actually within CG11388. (Bloomington Drosophila Stock Center, 2004.11.6)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_138026 NM_166647 RefSeq (Proteins) • NP_611870 NP_726398 DDBJ / EMBL / GenBank • AAF47137 AAM68289 BI635049 Entrez Gene - A searchable database of RefSeq genes. • 37832 UniProtKB/TrEMBL • Q6IDE2
Other Crossreferences
Linkouts
	BioGRID - A database of protein and genetic interactions • 63414 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0034958 DroID - A comprehensive database of gene and protein interactions. • FBgn0034958 DRSC - Results from RNAi screens. • FBgn0034958 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0034958 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3907-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0034958 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37832 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37832 modMine - Data generated by the modENCODE project. • FBgn0034958
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG3907 (Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
References ( 15 )
Research paper	Baycin-Hizal et al., 2011, J. Proteome Res. 10(6): 2777--2784 GlycoFly: A Database of Drosophila N-linked Glycoproteins Identified Using SPEG-MS Techniques. [FBrf0213834]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] Guruharsha et al., 2011, Cell 147(3): Table S3. [FBrf0218395] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
Curated genome annotation	FamiliarityBreedsContempt, 1999.11, [Automatic annotations performed at the Celera Jamboreee.] [Automatic annotations performed at the Celera Jamboreee.] [FBrf0126705]