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Gene Dmel\CG11388

General Information
Symbol	Dmel\CG11388	Species	D. melanogaster
Name		Annotation symbol	CG11388
Feature type	protein_coding_gene	FlyBase ID	FBgn0034959
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	60B4-60B4	Sequence location	2R:19,909,896..19,911,507 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG11388 (FBgn0034959). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: transferase activity, transferring glycosyl groups. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Glycosyl transferase, family 8. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 12-18 embryonic stages, during late pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval central nervous system, adult crop, adult hindgut, larval trachea, adult male accessory gland. Comments on Affy2 ProbeSet: ProbeSet 1638397_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG11388. Gene sequence location is 2R:19909896..19911507.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 60B4-60B4   Limits computationally determined from genome sequence between P{lacW}Phmk07623&P{lacW}tsrk05633 and P{EP}EP503
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG11388 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG11388-RA FBtr0072162  NM_138027   1612   458
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG11388-PA   FBpp0072071   53.6   458   9.64     NP_611871   AAF47138
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Glycosyl transferase, family 8 (IPR002495)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA698539   AE013599 AAF47138   AF171870   AI113438   AI403516   AW940882   AY060766 AAL28314   BG641445   BI353262   BI622920   BI627665   BI639315   BP552731   BT133021   CO265500   CO266424   CO280312   CO325898   CZ480831   EC087015   EC221757   EC222612   EC226956   EC233835   EC253029   EV588744   EV594428   GH742163   GH766426
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9W1D1 Q95SJ1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval central nervous system, adult crop, adult hindgut, larval trachea, adult male accessory gland. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    329.95 Larval Midgut    48.5 Larval Hindgut    82 Larval Malpighian Tubules    50.5 Larval Fat Body    37.5 Larval Salivary Gland    40.7 Larval Trachea    122.075 Larval Carcass    53.2 Adult Head    383.5 Adult Eye    1144.475 Adult Brain    670.2 Adult Thoracic-Abdominal Ganglion    989.2 Adult Crop    100.1 Adult Midgut    64.6 Adult Hindgut    102.6 Adult Malpighian Tubules    84.5 Adult Fat Body    36.9 Adult Salivary Gland    64.3 Adult Heart    60.225 Adult VirginFemale Spermatheca    52.9 Adult InseminatedFemale Spermatheca    58.5 Adult Ovary    65.2 Adult Testis    24.6 Adult Male Accessory Gland    101.3 Adult Carcass    76 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    329.95 Larval Midgut    48.5 Larval Hindgut    82 Larval Malpighian Tubules    50.5 Larval Fat Body    37.5 Larval Salivary Gland    40.7 Larval Trachea    122.075 Larval Carcass    53.2 Adult Head    383.5 Adult Eye  (1144.475) Adult Brain  (670.2) Adult Thoracic-Abdominal Ganglion  (989.2) Adult Crop    100.1 Adult Midgut    64.6 Adult Hindgut    102.6 Adult Malpighian Tubules    84.5 Adult Fat Body    36.9 Adult Salivary Gland    64.3 Adult Heart    60.225 Adult VirginFemale Spermatheca    52.9 Adult InseminatedFemale Spermatheca    58.5 Adult Ovary    65.2 Adult Testis    24.6 Adult Male Accessory Gland    101.3 Adult Carcass    76 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    329.95 Larval Midgut    48.5 Larval Hindgut    82 Larval Malpighian Tubules    50.5 Larval Fat Body    37.5 Larval Salivary Gland    40.7 Larval Trachea    122.075 Larval Carcass    53.2 Adult Head    383.5 Adult Eye  (1144.475) Adult Brain    670.2 Adult Thoracic-Abdominal Ganglion    989.2 Adult Crop    100.1 Adult Midgut    64.6 Adult Hindgut    102.6 Adult Malpighian Tubules    84.5 Adult Fat Body    36.9 Adult Salivary Gland    64.3 Adult Heart    60.225 Adult VirginFemale Spermatheca    52.9 Adult InseminatedFemale Spermatheca    58.5 Adult Ovary    65.2 Adult Testis    24.6 Adult Male Accessory Gland    101.3 Adult Carcass    76 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    329.95 Larval Midgut    48.5 Larval Hindgut    82 Larval Malpighian Tubules    50.5 Larval Fat Body    37.5 Larval Salivary Gland    40.7 Larval Trachea    122.075 Larval Carcass    53.2 Adult Head    383.5 Adult Eye    1144.475 Adult Brain    670.2 Adult Thoracic-Abdominal Ganglion    989.2 Adult Crop    100.1 Adult Midgut    64.6 Adult Hindgut    102.6 Adult Malpighian Tubules    84.5 Adult Fat Body    36.9 Adult Salivary Gland    64.3 Adult Heart    60.225 Adult VirginFemale Spermatheca    52.9 Adult InseminatedFemale Spermatheca    58.5 Adult Ovary    65.2 Adult Testis    24.6 Adult Male Accessory Gland    101.3 Adult Carcass    76 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    329.95 Larval Midgut    48.5 Larval Hindgut    82 Larval Malpighian Tubules    50.5 Larval Fat Body    37.5 Larval Salivary Gland    40.7 Larval Trachea    122.075 Larval Carcass    53.2 Adult Head    383.5 Adult Eye    1144.475 Adult Brain    670.2 Adult Thoracic-Abdominal Ganglion    989.2 Adult Crop    100.1 Adult Midgut    64.6 Adult Hindgut    102.6 Adult Malpighian Tubules    84.5 Adult Fat Body    36.9 Adult Salivary Gland    64.3 Adult Heart    60.225 Adult VirginFemale Spermatheca    52.9 Adult InseminatedFemale Spermatheca    58.5 Adult Ovary    65.2 Adult Testis    24.6 Adult Male Accessory Gland    101.3 Adult Carcass    76 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    329.95 Larval Midgut    48.5 Larval Hindgut    82 Larval Malpighian Tubules    50.5 Larval Fat Body    37.5 Larval Salivary Gland    40.7 Larval Trachea    122.075 Larval Carcass    53.2 Adult Head    383.5 Adult Eye  (1144.475) Adult Brain  670.2 Adult Thoracic-Abdominal Ganglion  (989.2) Adult Crop    100.1 Adult Midgut    64.6 Adult Hindgut    102.6 Adult Malpighian Tubules    84.5 Adult Fat Body    36.9 Adult Salivary Gland    64.3 Adult Heart    60.225 Adult VirginFemale Spermatheca    52.9 Adult InseminatedFemale Spermatheca    58.5 Adult Ovary    65.2 Adult Testis    24.6 Adult Male Accessory Gland    101.3 Adult Carcass    76 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    329.95 Larval Midgut    48.5 Larval Hindgut    82 Larval Malpighian Tubules    50.5 Larval Fat Body    37.5 Larval Salivary Gland    40.7 Larval Trachea    122.075 Larval Carcass    53.2 Adult Head    383.5 Adult Eye  1144.475 Adult Brain    670.2 Adult Thoracic-Abdominal Ganglion    989.2 Adult Crop    100.1 Adult Midgut    64.6 Adult Hindgut    102.6 Adult Malpighian Tubules    84.5 Adult Fat Body    36.9 Adult Salivary Gland    64.3 Adult Heart    60.225 Adult VirginFemale Spermatheca    52.9 Adult InseminatedFemale Spermatheca    58.5 Adult Ovary    65.2 Adult Testis    24.6 Adult Male Accessory Gland    101.3 Adult Carcass    76 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    329.95 Larval Midgut    48.5 Larval Hindgut    82 Larval Malpighian Tubules    50.5 Larval Fat Body    37.5 Larval Salivary Gland    40.7 Larval Trachea    122.075 Larval Carcass    53.2 Adult Head    383.5 Adult Eye    1144.475 Adult Brain    670.2 Adult Thoracic-Abdominal Ganglion    989.2 Adult Crop    100.1 Adult Midgut    64.6 Adult Hindgut    102.6 Adult Malpighian Tubules    84.5 Adult Fat Body    36.9 Adult Salivary Gland    64.3 Adult Heart    60.225 Adult VirginFemale Spermatheca    52.9 Adult InseminatedFemale Spermatheca    58.5 Adult Ovary    65.2 Adult Testis    24.6 Adult Male Accessory Gland    101.3 Adult Carcass    76 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    383.5   NA  Eye    1144.475   NA  Brain    670.2   329.95  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    989.2   NA  Crop    100.1   48.5  Midgut    64.6   82  Hindgut    102.6   50.5  Malpighian Tubules    84.5   37.5  Fat Body    36.9   40.7  Salivary Gland    64.3   NA  Heart    60.225   122.075  Trachea    NA   NA  VirginFemale Spermatheca    52.9   NA  InseminatedFemale Spermatheca    58.5   NA  Ovary    65.2   NA  Testis    24.6   NA  Male Accessory Gland    101.3   53.2  Carcass    76 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    19 central nervous system, pupae P8    42 head, virgin 1-day female    41 head, virgin 4-day female    37 head, virgin 20-day female    33 head, mated 1-day female    28 head, mated 4-day female    25 head, mated 20-day female    26 head, mated 1-day male    66 head, mated 4-day male    48 head, mated 20-day male    48 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    4 digestive system, 20-day adult    6 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    6 ovary, mated 4-day female    5 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    19 central nervous system, pupae P8  (42) head, virgin 1-day female  (41) head, virgin 4-day female  (37) head, virgin 20-day female  (33) head, mated 1-day female  (28) head, mated 4-day female    25 head, mated 20-day female  26 head, mated 1-day male  (66) head, mated 4-day male  (48) head, mated 20-day male  (48) salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    4 digestive system, 20-day adult    6 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    6 ovary, mated 4-day female    5 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    19 central nervous system, pupae P8    42 head, virgin 1-day female    41 head, virgin 4-day female    37 head, virgin 20-day female    33 head, mated 1-day female    28 head, mated 4-day female    25 head, mated 20-day female    26 head, mated 1-day male    66 head, mated 4-day male    48 head, mated 20-day male    48 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    4 digestive system, 20-day adult    6 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    6 ovary, mated 4-day female    5 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    19 central nervous system, pupae P8    42 head, virgin 1-day female    41 head, virgin 4-day female    37 head, virgin 20-day female    33 head, mated 1-day female    28 head, mated 4-day female    25 head, mated 20-day female    26 head, mated 1-day male    66 head, mated 4-day male    48 head, mated 20-day male    48 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    4 digestive system, 20-day adult    6 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    6 ovary, mated 4-day female    5 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    19 central nervous system, pupae P8    42 head, virgin 1-day female    41 head, virgin 4-day female    37 head, virgin 20-day female    33 head, mated 1-day female    28 head, mated 4-day female    25 head, mated 20-day female    26 head, mated 1-day male    66 head, mated 4-day male    48 head, mated 20-day male    48 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    4 digestive system, 20-day adult    6 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    6 ovary, mated 4-day female    5 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    19 central nervous system, pupae P8  (42) head, virgin 1-day female  (41) head, virgin 4-day female  (37) head, virgin 20-day female  (33) head, mated 1-day female  28 head, mated 4-day female    25 head, mated 20-day female  26 head, mated 1-day male  (66) head, mated 4-day male  (48) head, mated 20-day male  (48) salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    4 digestive system, 20-day adult    6 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    6 ovary, mated 4-day female    5 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    19 central nervous system, pupae P8    42 head, virgin 1-day female    41 head, virgin 4-day female    37 head, virgin 20-day female    33 head, mated 1-day female    28 head, mated 4-day female    25 head, mated 20-day female    26 head, mated 1-day male    66 head, mated 4-day male    48 head, mated 20-day male    48 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    4 digestive system, 20-day adult    6 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    6 ovary, mated 4-day female    5 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    19 central nervous system, pupae P8    42 head, virgin 1-day female    41 head, virgin 4-day female    37 head, virgin 20-day female    33 head, mated 1-day female    28 head, mated 4-day female    25 head, mated 20-day female    26 head, mated 1-day male    66 head, mated 4-day male    48 head, mated 20-day male    48 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    4 digestive system, 20-day adult    6 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    6 ovary, mated 4-day female    5 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 12-18 embryonic stages, during late pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    2 embryo 02-04hr    5 embryo 04-06hr    10 embryo 06-08hr    13 embryo 08-10hr    12 embryo 10-12hr    14 embryo 12-14hr    15 embryo 14-16hr    19 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    9 embryo 22-24hr    10 larva L1    13 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    16 pupae 2d postWPP    21 pupae 3d postWPP    24 pupae 4d postWPP    12 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    13 adult female 05day    9 adult female 30day    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    2 embryo 02-04hr    5 embryo 04-06hr    10 embryo 06-08hr    13 embryo 08-10hr    12 embryo 10-12hr    14 embryo 12-14hr    15 embryo 14-16hr    19 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    9 embryo 22-24hr    10 larva L1    13 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    16 pupae 2d postWPP    21 pupae 3d postWPP    24 pupae 4d postWPP    12 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    13 adult female 05day    9 adult female 30day    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2 embryo 02-04hr    5 embryo 04-06hr    10 embryo 06-08hr    13 embryo 08-10hr    12 embryo 10-12hr    14 embryo 12-14hr    15 embryo 14-16hr    19 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    9 embryo 22-24hr    10 larva L1    13 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    16 pupae 2d postWPP    21 pupae 3d postWPP    24 pupae 4d postWPP    12 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    13 adult female 05day    9 adult female 30day    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2 embryo 02-04hr    5 embryo 04-06hr    10 embryo 06-08hr    13 embryo 08-10hr    12 embryo 10-12hr    14 embryo 12-14hr    15 embryo 14-16hr    19 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    9 embryo 22-24hr    10 larva L1    13 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    16 pupae 2d postWPP    21 pupae 3d postWPP    24 pupae 4d postWPP    12 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    13 adult female 05day    9 adult female 30day    11 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    2 embryo 02-04hr    5 embryo 04-06hr    10 embryo 06-08hr    13 embryo 08-10hr    12 embryo 10-12hr    14 embryo 12-14hr    15 embryo 14-16hr    19 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    9 embryo 22-24hr    10 larva L1    13 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    16 pupae 2d postWPP    21 pupae 3d postWPP    24 pupae 4d postWPP    12 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    13 adult female 05day    9 adult female 30day    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    2 embryo 02-04hr    5 embryo 04-06hr    10 embryo 06-08hr    13 embryo 08-10hr    12 embryo 10-12hr    14 embryo 12-14hr    15 embryo 14-16hr    19 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    9 embryo 22-24hr    10 larva L1    13 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    16 pupae 2d postWPP    21 pupae 3d postWPP    24 pupae 4d postWPP    12 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    13 adult female 05day    9 adult female 30day    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2 embryo 02-04hr    5 embryo 04-06hr    10 embryo 06-08hr    13 embryo 08-10hr    12 embryo 10-12hr    14 embryo 12-14hr    15 embryo 14-16hr    19 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    9 embryo 22-24hr    10 larva L1    13 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    16 pupae 2d postWPP    21 pupae 3d postWPP    24 pupae 4d postWPP    12 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    13 adult female 05day    9 adult female 30day    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2 embryo 02-04hr    5 embryo 04-06hr    10 embryo 06-08hr    13 embryo 08-10hr    12 embryo 10-12hr    14 embryo 12-14hr    15 embryo 14-16hr    19 embryo 16-18hr    16 embryo 18-20hr    14 embryo 20-22hr    9 embryo 22-24hr    10 larva L1    13 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    16 pupae 2d postWPP    21 pupae 3d postWPP    24 pupae 4d postWPP    12 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    13 adult female 05day    9 adult female 30day    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    31 Schneider line 2 Sg4    7 embryonic 1182-4H    14 embryonic GM2    12 embryonic Kc167    12 embryonic S1    22 embryonic S3    16 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    12 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    8 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    10 CNS ML-DmBG1-c1    15 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    15 ovary fGS/OSS    17 ovary OSC    11 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (31) Schneider line 2 Sg4    7 embryonic 1182-4H    14 embryonic GM2    12 embryonic Kc167    12 embryonic S1    22 embryonic S3    16 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    12 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    8 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    10 CNS ML-DmBG1-c1    15 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    15 ovary fGS/OSS    17 ovary OSC    11 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    31 Schneider line 2 Sg4    7 embryonic 1182-4H    14 embryonic GM2    12 embryonic Kc167    12 embryonic S1    22 embryonic S3    16 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    12 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    8 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    10 CNS ML-DmBG1-c1    15 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    15 ovary fGS/OSS    17 ovary OSC    11 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    31 Schneider line 2 Sg4    7 embryonic 1182-4H    14 embryonic GM2    12 embryonic Kc167    12 embryonic S1    22 embryonic S3    16 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    12 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    8 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    10 CNS ML-DmBG1-c1    15 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    15 ovary fGS/OSS    17 ovary OSC    11 ovary OSS    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    31 Schneider line 2 Sg4    7 embryonic 1182-4H    14 embryonic GM2    12 embryonic Kc167    12 embryonic S1    22 embryonic S3    16 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    12 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    8 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    10 CNS ML-DmBG1-c1    15 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    15 ovary fGS/OSS    17 ovary OSC    11 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  31 Schneider line 2 Sg4    7 embryonic 1182-4H    14 embryonic GM2    12 embryonic Kc167    12 embryonic S1    22 embryonic S3    16 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    12 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    8 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    10 CNS ML-DmBG1-c1    15 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    15 ovary fGS/OSS    17 ovary OSC    11 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    31 Schneider line 2 Sg4    7 embryonic 1182-4H    14 embryonic GM2    12 embryonic Kc167    12 embryonic S1    22 embryonic S3    16 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    12 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    8 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    10 CNS ML-DmBG1-c1    15 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    15 ovary fGS/OSS    17 ovary OSC    11 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    31 Schneider line 2 Sg4    7 embryonic 1182-4H    14 embryonic GM2    12 embryonic Kc167    12 embryonic S1    22 embryonic S3    16 leg disc CME L1    11 wing disc CME-W2    8 wing disc ML-DmD8    12 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    8 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    23 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    10 CNS ML-DmBG1-c1    15 CNS ML-DmBG2-c2    13 tumorous blood cells mbn2    15 ovary fGS/OSS    17 ovary OSC    11 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_24 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0034959 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG11388-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG11388e03063 viable, with Scer\GAL4pnr-MD237 CG11388GD2194 Sterility Allele fertile CG11388e03063 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG11388 Class Mutagen Stocks Known lesion CG11388e03063 piggyBac transposase 2 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG11388 Class Mutagen Stocks Known lesion CG11388GD2194 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG11388HMS02633 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG11388KK100600 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel6080 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD2194} NA P{KK100600} NA P{TRiP.HMS02633} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{RB}CG11388e03063 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
transferase activity, transferring glycosyl groups inferred from electronic annotation with InterPro:IPR002495 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG11388 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0034959
Orthologs
OrthoDB Orthologs (38) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6TXCBR Dipteran inclusive ortholog search EOG68WC9H Insect inclusive ortholog search EOG6PRRMH Arthropod inclusive ortholog search EOG669P9J Metazoa inclusive ortholog search EOG6XWTRH
Orthologs in Drosophila Species (EOG6TXCBR)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG11388     Drosophila sechellia   Dsec\GM16083 Y   Drosophila erecta   Dere\GG22921 Y   Drosophila yakuba   Dyak\GE14358 Y   Drosophila ananassae   Dana\GF12890 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA10968 Y   Drosophila persimilis   Dper\GL11650 Y   Drosophila willistoni   Dwil\GK21934 Y   Drosophila mojavensis   Dmoj\GI20695 Y   Drosophila grimshawi   Dgri\GH21705 Y
Orthologs in non-Drosophila Dipterans (EOG68WC9H)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL009190   Aedes aegypti Yellow fever mosquito  Aaeg\AAEL001590   Anopheles gambiae Malaria mosquito  Agam\AGAP007604   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ000257
Orthologs in non-Dipteran Insects (EOG6PRRMH)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC724932   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG000729   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH26617   Atta cephalotes Leafcutter ant  Acep\ACEP11631   Atta cephalotes Leafcutter ant  Acep\ACEP11632   Camponotus floridanus Florida carpenter ant  Cflo\CFLO15965   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL22789   Linepithema humile Argentine ant  Lhum\LH14480   Pogonomyrmex barbatus Red harvester ant  Pbar\PB22376   Solenopsis invicta Red fire ant  Sinv\SINV23816   Acyrthosiphon pisum Pea aphid  Apim\ACYPI007198   Pediculus humanus Human body louse  Phum\PHUM498320   Tribolium castaneum Red flour beetle  Tcas\TC013781
Orthologs in non-Insect Arthropods (EOG669P9J)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\COI   Ixodes scapularis Deer tick  Isca\ISCW023304
Orthologs in non-Arthropod Metazoa (EOG6XWTRH)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_022073gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_022071gn   Danio rerio Zebrafish  Drer\ENSDARG00000070417   Danio rerio Zebrafish  Drer\ENSDARG00000088799   Xenopus tropicalis Western clawed frog  Xtro\c3orf21   Gallus gallus Domestic chicken  Ggal\C3orf21   Mus musculus House mouse  Mmus\Xxylt1   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000001729   Homo sapiens Human  Hsap\XXYLT1
Human Orthologs (1)
Gene OMIM HGNC Hsap\XXYLT1
AAA Orthologs (9) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila sechellia Dsec\GM16083 Drosophila erecta Dere\GG22921 Drosophila yakuba Dyak\GE14358 Drosophila ananassae Dana\GF12890 Drosophila pseudoobscura pseudoobscura Dpse\GA10968 Drosophila persimilis Dper\GL11650 Drosophila willistoni Dwil\GK21934 Drosophila mojavensis Dmoj\GI20695 Drosophila grimshawi Dgri\GH21705
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	18113 w1118; PBac{RB}CG11388e03063 42940 y1 sc* v1; P{TRiP.HMS02633}attP40
Harvard	- PBac{RB}CG11388e03063
VDRC	v105392 P{KK100600}VIE-260B v3604 w1118; P{GD2194}v3604 v41433 w1118; P{GD2194}v41433
Genomic Clones ( 1 )
	BACR28M05 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 25 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH22974
Other clones	AF171870 FI19481
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH09246 GM22918 HL04882 RH54959 RH69036 SD12787 SD21871
Other clones	33153 40383 47319 78414 163030 214213.70 Dmel_neb_011910_0660_1470 Dmel_neb_012818_0121_1485 EK142820 EK146409 EK153715 EP02857 FGM220D11 RP001006698 RP001039330
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0034959 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37833
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG11388 anon-EST:Posey287 (Bayraktaroglu, 2000.11.2)
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_138027 RefSeq (Proteins) • NP_611871 DDBJ / EMBL / GenBank • AAF47138 AAL28314 AF171870 AI403516 AW940882 AY060766 CZ480831 Entrez Gene - A searchable database of RefSeq genes. • 37833 UniProtKB/TrEMBL • Q9W1D1 Q95SJ1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Glycosyl transferase, family 8 (IPR002495)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0034959 DRSC - Results from RNAi screens. • FBgn0034959 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0034959 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG11388-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0034959 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37833 modMine - Data generated by the modENCODE project. • FBgn0034959
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	anon-EST:Posey287   CG11388 (Keleman et al., 2009.8.5, Ni et al., 2010.12.1)
Name Synonym
Secondary FlyBase IDs
	FBgn0027694
References ( 14 )
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Ni et al., 2010.12.1, A genome-scale shRNA resource for transgenic RNAi in Drosophila. A genome-scale shRNA resource for transgenic RNAi in Drosophila. [FBrf0212437] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file) Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] Bayraktaroglu, 2000.11.2, Current list of possibly CG-able known genes. Current list of possibly CG-able known genes. [FBrf0131225] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]