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Gene Dmel\Aats-tyr-m

General Information
Symbol	Dmel\Aats-tyr-m	Species	D. melanogaster
Name	mitochondrial tyrosyl-tRNA synthetase	Annotation symbol	CG16912
Feature type	protein_coding_gene	FlyBase ID	FBgn0035064
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	60E1-60E1	Sequence location	2R:20,669,249..20,671,023 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG16912 (FBgn0035064). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: tyrosine-tRNA ligase activity. Based on sequence similarity, it is predicted to be involved in the biological process: translation. 4 alleles are reported. The phenotype of these alleles is annotated with: trichogen cell. It has one annotated transcript and one annotated polypeptide. Protein features are: Aminoacyl-tRNA synthetase, class I, conserved site; Aminoacyl-tRNA synthetase, class Ic; RNA-binding S4 domain; Rossmann-like alpha/beta/alpha sandwich fold; Tyrosine-tRNA ligase; Tyrosine-tRNA ligase, bacterial-type; Tyrosine-tRNA ligase, bacterial-type, type 1. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed during early larval stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult female reproductive system. Comments on Affy2 ProbeSet: ProbeSet 1636157_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG16912. Gene sequence location is 2R:20669249..20671023.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03	Alleles Aats-tyr-m[tOre.V275A] Aats-tyr-m[tOre] Aats-tyr-m[Ore] Aats-tyr-m[tAutW132] Transgenic Constructs PBac{Aats-tyr-m.AutW132} PBac{Aats-tyr-m.Ore.V275A} PBac{Aats-tyr-m.Ore}
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 60E1-60E1   Limits computationally determined from genome sequence between P{lacW}Mmp1k04809 and P{EP}Reg-5EP1065
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Aats-tyr-m for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47 Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Aats-tyr-m-RA FBtr0072429  NM_138123   1540   464
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Aats-tyr-m-PA   FBpp0072334   52.6   464   9.12     NP_611967   AAF47271
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Aminoacyl-tRNA synthetase, class I, conserved site (IPR001412) Aminoacyl-tRNA synthetase, class Ic (IPR002305) Tyrosine-tRNA ligase (IPR002307) Tyrosine-tRNA ligase, bacterial-type (IPR024088) Tyrosine-tRNA ligase, bacterial-type, type 1 (IPR024107) Rossmann-like alpha/beta/alpha sandwich fold (IPR014729) RNA-binding S4 domain (IPR002942)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA433213   AA803282   AE013599 AAF47271   AW941352   AY060975 AAL28523   AY113395 AAM29400   BG640490   BI167551   BI355354   BI635214   BT030810   CK604290   CK604291   CK661253   CO335669   EC214553   EC264998
UniProtKB/Swiss-Prot	Q9W107
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult female reproductive system. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    68.025 Larval Midgut    65.4 Larval Hindgut    78.3 Larval Malpighian Tubules    96.9 Larval Fat Body    46 Larval Salivary Gland    60.2 Larval Trachea    71.3 Larval Carcass    72.5 Adult Head    58.2 Adult Eye    82.325 Adult Brain    52.4 Adult Thoracic-Abdominal Ganglion    73.9 Adult Crop    69.2 Adult Midgut    62.9 Adult Hindgut    48.7 Adult Malpighian Tubules    64 Adult Fat Body    69.7 Adult Salivary Gland    35 Adult Heart    75.075 Adult VirginFemale Spermatheca    116.7 Adult InseminatedFemale Spermatheca    98.2 Adult Ovary    121.2 Adult Testis    19.2 Adult Male Accessory Gland    29.9 Adult Carcass    65.9 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    68.025 Larval Midgut    65.4 Larval Hindgut    78.3 Larval Malpighian Tubules    96.9 Larval Fat Body    46 Larval Salivary Gland    60.2 Larval Trachea    71.3 Larval Carcass    72.5 Adult Head    58.2 Adult Eye    82.325 Adult Brain    52.4 Adult Thoracic-Abdominal Ganglion    73.9 Adult Crop    69.2 Adult Midgut    62.9 Adult Hindgut    48.7 Adult Malpighian Tubules    64 Adult Fat Body    69.7 Adult Salivary Gland    35 Adult Heart    75.075 Adult VirginFemale Spermatheca    116.7 Adult InseminatedFemale Spermatheca    98.2 Adult Ovary    121.2 Adult Testis    19.2 Adult Male Accessory Gland    29.9 Adult Carcass    65.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    68.025 Larval Midgut    65.4 Larval Hindgut    78.3 Larval Malpighian Tubules    96.9 Larval Fat Body    46 Larval Salivary Gland    60.2 Larval Trachea    71.3 Larval Carcass    72.5 Adult Head    58.2 Adult Eye    82.325 Adult Brain    52.4 Adult Thoracic-Abdominal Ganglion    73.9 Adult Crop    69.2 Adult Midgut    62.9 Adult Hindgut    48.7 Adult Malpighian Tubules    64 Adult Fat Body    69.7 Adult Salivary Gland    35 Adult Heart    75.075 Adult VirginFemale Spermatheca    116.7 Adult InseminatedFemale Spermatheca    98.2 Adult Ovary    121.2 Adult Testis    19.2 Adult Male Accessory Gland    29.9 Adult Carcass    65.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    68.025 Larval Midgut    65.4 Larval Hindgut    78.3 Larval Malpighian Tubules    96.9 Larval Fat Body    46 Larval Salivary Gland    60.2 Larval Trachea    71.3 Larval Carcass    72.5 Adult Head    58.2 Adult Eye    82.325 Adult Brain    52.4 Adult Thoracic-Abdominal Ganglion    73.9 Adult Crop    69.2 Adult Midgut    62.9 Adult Hindgut    48.7 Adult Malpighian Tubules    64 Adult Fat Body    69.7 Adult Salivary Gland    35 Adult Heart    75.075 Adult VirginFemale Spermatheca    116.7 Adult InseminatedFemale Spermatheca    98.2 Adult Ovary    121.2 Adult Testis    19.2 Adult Male Accessory Gland    29.9 Adult Carcass    65.9 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    68.025 Larval Midgut    65.4 Larval Hindgut    78.3 Larval Malpighian Tubules    96.9 Larval Fat Body    46 Larval Salivary Gland    60.2 Larval Trachea    71.3 Larval Carcass    72.5 Adult Head    58.2 Adult Eye    82.325 Adult Brain    52.4 Adult Thoracic-Abdominal Ganglion    73.9 Adult Crop    69.2 Adult Midgut    62.9 Adult Hindgut    48.7 Adult Malpighian Tubules    64 Adult Fat Body    69.7 Adult Salivary Gland    35 Adult Heart    75.075 Adult VirginFemale Spermatheca    116.7 Adult InseminatedFemale Spermatheca    98.2 Adult Ovary    121.2 Adult Testis    19.2 Adult Male Accessory Gland    29.9 Adult Carcass    65.9 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    68.025 Larval Midgut    65.4 Larval Hindgut    78.3 Larval Malpighian Tubules    96.9 Larval Fat Body    46 Larval Salivary Gland    60.2 Larval Trachea    71.3 Larval Carcass    72.5 Adult Head    58.2 Adult Eye    82.325 Adult Brain    52.4 Adult Thoracic-Abdominal Ganglion    73.9 Adult Crop    69.2 Adult Midgut    62.9 Adult Hindgut    48.7 Adult Malpighian Tubules    64 Adult Fat Body    69.7 Adult Salivary Gland    35 Adult Heart    75.075 Adult VirginFemale Spermatheca    116.7 Adult InseminatedFemale Spermatheca    98.2 Adult Ovary    121.2 Adult Testis    19.2 Adult Male Accessory Gland    29.9 Adult Carcass    65.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    68.025 Larval Midgut    65.4 Larval Hindgut    78.3 Larval Malpighian Tubules    96.9 Larval Fat Body    46 Larval Salivary Gland    60.2 Larval Trachea    71.3 Larval Carcass    72.5 Adult Head    58.2 Adult Eye    82.325 Adult Brain    52.4 Adult Thoracic-Abdominal Ganglion    73.9 Adult Crop    69.2 Adult Midgut    62.9 Adult Hindgut    48.7 Adult Malpighian Tubules    64 Adult Fat Body    69.7 Adult Salivary Gland    35 Adult Heart    75.075 Adult VirginFemale Spermatheca    116.7 Adult InseminatedFemale Spermatheca    98.2 Adult Ovary    121.2 Adult Testis    19.2 Adult Male Accessory Gland    29.9 Adult Carcass    65.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    68.025 Larval Midgut    65.4 Larval Hindgut    78.3 Larval Malpighian Tubules    96.9 Larval Fat Body    46 Larval Salivary Gland    60.2 Larval Trachea    71.3 Larval Carcass    72.5 Adult Head    58.2 Adult Eye    82.325 Adult Brain    52.4 Adult Thoracic-Abdominal Ganglion    73.9 Adult Crop    69.2 Adult Midgut    62.9 Adult Hindgut    48.7 Adult Malpighian Tubules    64 Adult Fat Body    69.7 Adult Salivary Gland    35 Adult Heart    75.075 Adult VirginFemale Spermatheca    116.7 Adult InseminatedFemale Spermatheca    98.2 Adult Ovary    121.2 Adult Testis    19.2 Adult Male Accessory Gland    29.9 Adult Carcass    65.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    58.2   NA  Eye    82.325   NA  Brain    52.4   68.025  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    73.9   NA  Crop    69.2   65.4  Midgut    62.9   78.3  Hindgut    48.7   96.9  Malpighian Tubules    64   46  Fat Body    69.7   60.2  Salivary Gland    no informative data   NA  Heart    75.075   71.3  Trachea    NA   NA  VirginFemale Spermatheca    116.7   NA  InseminatedFemale Spermatheca    98.2   NA  Ovary    121.2   NA  Testis    19.2   NA  Male Accessory Gland    29.9   72.5  Carcass    65.9 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    5 central nervous system, pupae P8    4 head, virgin 1-day female    6 head, virgin 4-day female    4 head, virgin 20-day female    5 head, mated 1-day female    6 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    5 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    5 digestive system, 20-day adult    4 fat body, larvae L3 wandering    4 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female    15 ovary, mated 4-day female    11 testis, mated 4-day male    6 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    5 central nervous system, pupae P8    4 head, virgin 1-day female    6 head, virgin 4-day female    4 head, virgin 20-day female    5 head, mated 1-day female    6 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    5 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    5 digestive system, 20-day adult    4 fat body, larvae L3 wandering    4 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female    15 ovary, mated 4-day female    11 testis, mated 4-day male    6 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    5 central nervous system, pupae P8    4 head, virgin 1-day female    6 head, virgin 4-day female    4 head, virgin 20-day female    5 head, mated 1-day female    6 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    5 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    5 digestive system, 20-day adult    4 fat body, larvae L3 wandering    4 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female    15 ovary, mated 4-day female    11 testis, mated 4-day male    6 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    5 central nervous system, pupae P8    4 head, virgin 1-day female    6 head, virgin 4-day female    4 head, virgin 20-day female    5 head, mated 1-day female    6 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    5 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    5 digestive system, 20-day adult    4 fat body, larvae L3 wandering    4 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female    15 ovary, mated 4-day female    11 testis, mated 4-day male    6 accessory gland, mated 4-day male    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    5 central nervous system, pupae P8    4 head, virgin 1-day female    6 head, virgin 4-day female    4 head, virgin 20-day female    5 head, mated 1-day female    6 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    5 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    5 digestive system, 20-day adult    4 fat body, larvae L3 wandering    4 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female    15 ovary, mated 4-day female    11 testis, mated 4-day male    6 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    5 central nervous system, pupae P8    4 head, virgin 1-day female    6 head, virgin 4-day female    4 head, virgin 20-day female    5 head, mated 1-day female    6 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    5 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    5 digestive system, 20-day adult    4 fat body, larvae L3 wandering    4 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female    15 ovary, mated 4-day female    11 testis, mated 4-day male    6 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    5 central nervous system, pupae P8    4 head, virgin 1-day female    6 head, virgin 4-day female    4 head, virgin 20-day female    5 head, mated 1-day female    6 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    5 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    5 digestive system, 20-day adult    4 fat body, larvae L3 wandering    4 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female    15 ovary, mated 4-day female    11 testis, mated 4-day male    6 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    5 central nervous system, pupae P8    4 head, virgin 1-day female    6 head, virgin 4-day female    4 head, virgin 20-day female    5 head, mated 1-day female    6 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    5 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    5 digestive system, 20-day adult    4 fat body, larvae L3 wandering    4 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    6 carcass, 1-day adult    6 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female    15 ovary, mated 4-day female    11 testis, mated 4-day male    6 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed during early larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    7 embryo 04-06hr    14 embryo 06-08hr    13 embryo 08-10hr    13 embryo 10-12hr    15 embryo 12-14hr    14 embryo 14-16hr    14 embryo 16-18hr    14 embryo 18-20hr    14 embryo 20-22hr    13 embryo 22-24hr    13 larva L1    19 larva L2    24 larva L3 12hr old    15 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    7 white prepupae new    7 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    12 pupae 3d postWPP    16 pupae 4d postWPP    8 adult male 01day    8 adult male 05day    7 adult male 30day    6 adult female 01day    13 adult female 05day    15 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    7 embryo 04-06hr    14 embryo 06-08hr    13 embryo 08-10hr    13 embryo 10-12hr    15 embryo 12-14hr    14 embryo 14-16hr    14 embryo 16-18hr    14 embryo 18-20hr    14 embryo 20-22hr    13 embryo 22-24hr    13 larva L1    19 larva L2    24 larva L3 12hr old    15 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    7 white prepupae new    7 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    12 pupae 3d postWPP    16 pupae 4d postWPP    8 adult male 01day    8 adult male 05day    7 adult male 30day    6 adult female 01day    13 adult female 05day    15 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    7 embryo 04-06hr    14 embryo 06-08hr    13 embryo 08-10hr    13 embryo 10-12hr    15 embryo 12-14hr    14 embryo 14-16hr    14 embryo 16-18hr    14 embryo 18-20hr    14 embryo 20-22hr    13 embryo 22-24hr    13 larva L1    19 larva L2    24 larva L3 12hr old    15 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    7 white prepupae new    7 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    12 pupae 3d postWPP    16 pupae 4d postWPP    8 adult male 01day    8 adult male 05day    7 adult male 30day    6 adult female 01day    13 adult female 05day    15 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    7 embryo 04-06hr    14 embryo 06-08hr    13 embryo 08-10hr    13 embryo 10-12hr    15 embryo 12-14hr    14 embryo 14-16hr    14 embryo 16-18hr    14 embryo 18-20hr    14 embryo 20-22hr    13 embryo 22-24hr    13 larva L1    19 larva L2    24 larva L3 12hr old    15 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    7 white prepupae new    7 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    12 pupae 3d postWPP    16 pupae 4d postWPP    8 adult male 01day    8 adult male 05day    7 adult male 30day    6 adult female 01day    13 adult female 05day    15 adult female 30day    15 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    7 embryo 04-06hr    14 embryo 06-08hr    13 embryo 08-10hr    13 embryo 10-12hr    15 embryo 12-14hr    14 embryo 14-16hr    14 embryo 16-18hr    14 embryo 18-20hr    14 embryo 20-22hr    13 embryo 22-24hr    13 larva L1    19 larva L2    24 larva L3 12hr old    15 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    7 white prepupae new    7 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    12 pupae 3d postWPP    16 pupae 4d postWPP    8 adult male 01day    8 adult male 05day    7 adult male 30day    6 adult female 01day    13 adult female 05day    15 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    7 embryo 04-06hr    14 embryo 06-08hr    13 embryo 08-10hr    13 embryo 10-12hr    15 embryo 12-14hr    14 embryo 14-16hr    14 embryo 16-18hr    14 embryo 18-20hr    14 embryo 20-22hr    13 embryo 22-24hr    13 larva L1    19 larva L2    24 larva L3 12hr old    15 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    7 white prepupae new    7 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    12 pupae 3d postWPP    16 pupae 4d postWPP    8 adult male 01day    8 adult male 05day    7 adult male 30day    6 adult female 01day    13 adult female 05day    15 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    7 embryo 04-06hr    14 embryo 06-08hr    13 embryo 08-10hr    13 embryo 10-12hr    15 embryo 12-14hr    14 embryo 14-16hr    14 embryo 16-18hr    14 embryo 18-20hr    14 embryo 20-22hr    13 embryo 22-24hr    13 larva L1    19 larva L2    24 larva L3 12hr old    15 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    7 white prepupae new    7 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    12 pupae 3d postWPP    16 pupae 4d postWPP    8 adult male 01day    8 adult male 05day    7 adult male 30day    6 adult female 01day    13 adult female 05day    15 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    15 embryo 02-04hr    7 embryo 04-06hr    14 embryo 06-08hr    13 embryo 08-10hr    13 embryo 10-12hr    15 embryo 12-14hr    14 embryo 14-16hr    14 embryo 16-18hr    14 embryo 18-20hr    14 embryo 20-22hr    13 embryo 22-24hr    13 larva L1    19 larva L2    24 larva L3 12hr old    15 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    7 white prepupae new    7 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    12 pupae 3d postWPP    16 pupae 4d postWPP    8 adult male 01day    8 adult male 05day    7 adult male 30day    6 adult female 01day    13 adult female 05day    15 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    15 embryonic 1182-4H    16 embryonic GM2    16 embryonic Kc167    7 embryonic S1    11 embryonic S3    17 leg disc CME L1    12 wing disc CME-W2    12 wing disc ML-DmD8    9 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    20 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    20 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    22 CNS ML-DmBG1-c1    27 CNS ML-DmBG2-c2    14 tumorous blood cells mbn2    10 ovary fGS/OSS    10 ovary OSC    10 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    15 embryonic 1182-4H    16 embryonic GM2    16 embryonic Kc167    7 embryonic S1    11 embryonic S3    17 leg disc CME L1    12 wing disc CME-W2    12 wing disc ML-DmD8    9 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    20 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    20 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    22 CNS ML-DmBG1-c1  (27) CNS ML-DmBG2-c2    14 tumorous blood cells mbn2    10 ovary fGS/OSS    10 ovary OSC    10 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    15 embryonic 1182-4H    16 embryonic GM2    16 embryonic Kc167    7 embryonic S1    11 embryonic S3    17 leg disc CME L1    12 wing disc CME-W2    12 wing disc ML-DmD8    9 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    20 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    20 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    22 CNS ML-DmBG1-c1    27 CNS ML-DmBG2-c2    14 tumorous blood cells mbn2    10 ovary fGS/OSS    10 ovary OSC    10 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    15 embryonic 1182-4H    16 embryonic GM2    16 embryonic Kc167    7 embryonic S1    11 embryonic S3    17 leg disc CME L1    12 wing disc CME-W2    12 wing disc ML-DmD8    9 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    20 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    20 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    22 CNS ML-DmBG1-c1    27 CNS ML-DmBG2-c2    14 tumorous blood cells mbn2    10 ovary fGS/OSS    10 ovary OSC    10 ovary OSS    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    15 embryonic 1182-4H    16 embryonic GM2    16 embryonic Kc167    7 embryonic S1    11 embryonic S3    17 leg disc CME L1    12 wing disc CME-W2    12 wing disc ML-DmD8    9 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    20 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    20 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    22 CNS ML-DmBG1-c1    27 CNS ML-DmBG2-c2    14 tumorous blood cells mbn2    10 ovary fGS/OSS    10 ovary OSC    10 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    15 embryonic 1182-4H    16 embryonic GM2    16 embryonic Kc167    7 embryonic S1    11 embryonic S3    17 leg disc CME L1    12 wing disc CME-W2    12 wing disc ML-DmD8    9 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    20 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    20 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    22 CNS ML-DmBG1-c1  27 CNS ML-DmBG2-c2    14 tumorous blood cells mbn2    10 ovary fGS/OSS    10 ovary OSC    10 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    15 embryonic 1182-4H    16 embryonic GM2    16 embryonic Kc167    7 embryonic S1    11 embryonic S3    17 leg disc CME L1    12 wing disc CME-W2    12 wing disc ML-DmD8    9 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    20 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    20 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    22 CNS ML-DmBG1-c1    27 CNS ML-DmBG2-c2    14 tumorous blood cells mbn2    10 ovary fGS/OSS    10 ovary OSC    10 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    15 embryonic 1182-4H    16 embryonic GM2    16 embryonic Kc167    7 embryonic S1    11 embryonic S3    17 leg disc CME L1    12 wing disc CME-W2    12 wing disc ML-DmD8    9 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    20 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    20 eye-antennal disc ML-DmD11    21 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    22 CNS ML-DmBG1-c1    27 CNS ML-DmBG2-c2    14 tumorous blood cells mbn2    10 ovary fGS/OSS    10 ovary OSC    10 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    3 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    3 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    3 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    3 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    3 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    3 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    3 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    3 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    9 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_19 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	BDGP expression data • GM10508 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035064 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG16912-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 Aats-tyr-mGD9233 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 Aats-tyr-mGD9233 Phenotype manifest in Allele trichogen cell, with Scer\GAL4pnr-MD237 Aats-tyr-mGD9233
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of Aats-tyr-m Class Mutagen Stocks Known lesion Aats-tyr-mG18149 P-element activity 1 -- Aats-tyr-mOre natural population 0 Yes
Alleles Carried on Transgenic Constructs ( 6 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Aats-tyr-m Class Mutagen Stocks Known lesion Aats-tyr-mGD9233 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Aats-tyr-mKK102863 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes Aats-tyr-mNIG.16912R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes Aats-tyr-mtAutW132 in vitro construct - genomic fragment 0 Yes Aats-tyr-mtOre.V275A in vitro construct - amino acid replacement 0 Yes Aats-tyr-mtOre in vitro construct - genomic fragment 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data characterization construct PBac{Aats-tyr-m.AutW132} NA PBac{Aats-tyr-m.Ore.V275A} NA PBac{Aats-tyr-m.Ore} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}Aats-tyr-mG18149 NA P{GSV1}EP-261 NA
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 6 terms )
Molecular Function
CV term Evidence References
ATP binding inferred from electronic annotation with InterPro:IPR001412, InterPro:IPR002305, InterPro:IPR002307 (FlyBase Curators et al., 2004-) RNA binding inferred from electronic annotation with InterPro:IPR002942 (FlyBase Curators et al., 2004-) tyrosine-tRNA ligase activity inferred from sequence or structural similarity with Saccharomyces MSY1 (FlyBase, 1992-) inferred from sequence or structural similarity with UniProtKB:Q9Y2Z4 (assigned by UniProtKB) (Swiss-Prot Project Members, 2004.10.25)
Biological Process
CV term Evidence References
translation inferred from sequence or structural similarity with UniProtKB:Q9Y2Z4 (assigned by UniProtKB) (Swiss-Prot Project Members, 2004.10.25) tyrosyl-tRNA aminoacylation inferred from electronic annotation with InterPro:IPR002307 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
mitochondrion inferred from sequence or structural similarity with UniProtKB:Q9Y2Z4 (assigned by UniProtKB) (Swiss-Prot Project Members, 2004.10.25)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
Aats-tyr-m - CG11266 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Aats-tyr-m - CG13472 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Aats-tyr-m - CG4611 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Aats-tyr-m - CG6453 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Aats-tyr-m - CG8545 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Aats-tyr-m - Ns1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Aats-tyr-m - RpS21 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Aats-tyr-m - SF1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Aats-tyr-m - mRpL44 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Aats-tyr-m - mod anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Aats-tyr-m allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0035064 DroID - A comprehensive database of gene and protein interactions. • FBgn0035064 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37965
Orthologs
OrthoDB Orthologs (40) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6P8G3V Dipteran inclusive ortholog search EOG6KKZBF Insect inclusive ortholog search EOG68SFPN Arthropod inclusive ortholog search EOG673N6T Metazoa inclusive ortholog search EOG6MWN0R
Orthologs in Drosophila Species (EOG6P8G3V)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Aats-tyr-m     Drosophila simulans   Dsim\GD24918 Y   Drosophila sechellia   Dsec\GM11790 Y   Drosophila erecta   Dere\GG19890 Y   Drosophila yakuba   Dyak\GE11414 Y   Drosophila ananassae   Dana\GF11543 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA14214 Y   Drosophila persimilis   Dper\GL17697 Y   Drosophila willistoni   Dwil\GK21649 Y   Drosophila virilis   Dvir\GJ21079 Y   Drosophila mojavensis   Dmoj\GI19509 Y   Drosophila grimshawi   Dgri\GH21538 Y
Orthologs in non-Drosophila Dipterans (EOG6KKZBF)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL010563   Anopheles gambiae Malaria mosquito  Agam\TTRNA1   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ016140
Orthologs in non-Dipteran Insects (EOG68SFPN)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB44521   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG005199   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH10064   Atta cephalotes Leafcutter ant  Acep\ACEP20607   Camponotus floridanus Florida carpenter ant  Cflo\CFLO15710   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL13174   Linepithema humile Argentine ant  Lhum\LH17981   Pogonomyrmex barbatus Red harvester ant  Pbar\PB19672   Solenopsis invicta Red fire ant  Sinv\SINV18108   Acyrthosiphon pisum Pea aphid  Apim\ACYPI003053   Bombyx mori Silkmoth  Bmor\BGIBMGA014443   Pediculus humanus Human body louse  Phum\PHUM208870   Tribolium castaneum Red flour beetle  Tcas\TC002218   Tribolium castaneum Red flour beetle  Tcas\TC002219
Orthologs in non-Insect Arthropods (EOG673N6T)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\Otop1   Ixodes scapularis Deer tick  Isca\ISCW003217
Orthologs in non-Arthropod Metazoa (EOG6MWN0R)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\K08F11.4   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_014428gn   Danio rerio Zebrafish  Drer\wu:fi41d10   Danio rerio Zebrafish  Drer\wu:fi41d10   Xenopus tropicalis Western clawed frog  Xtro\yars2   Gallus gallus Domestic chicken  Ggal\YARS2   Mus musculus House mouse  Mmus\Yars2   Rattus norvegicus Norway rat  Rnor\Yars2   Homo sapiens Human  Hsap\YARS2
Human Orthologs (1)
Gene OMIM HGNC Hsap\YARS2
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD24918 Drosophila sechellia Dsec\GM11790 Drosophila erecta Dere\GG19890 Drosophila yakuba Dyak\GE11414 Drosophila ananassae Dana\GF11543 Drosophila pseudoobscura pseudoobscura Dpse\GA14214 Drosophila persimilis Dper\GL17697 Drosophila willistoni Dwil\GK21649 Drosophila virilis Dvir\GJ21079 Drosophila mojavensis Dmoj\GI19509 Drosophila grimshawi Dgri\GH21538
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
Bloomington	27433 y1 w*; P{EP}Aats-tyr-mG18149
VDRC	v20327 w1118; P{GD9233}v20327
Genomic Clones ( 1 )
	BACR27P17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 13 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM10508 RE07958
Other clones	DPiM_FI02013 FI02013
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GM30491 LP20585 SD11519 SD16496
Other clones	123617 542608 AA433213 EN10944 UT01067
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0035064 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37965
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Aats-tyr-m CG16912 (Meiklejohn et al., 2013)
Source for database merge of	Source for merge of: CG16912 anon-EST:fe1E12 (Bayraktaroglu, 2000.11.2)
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_138123 RefSeq (Proteins) • NP_611967 DDBJ / EMBL / GenBank • AA433213 AA803282 AAF47271 AAL28523 AAM29400 AW941352 AY060975 AY113395 BI167551 Entrez Gene - A searchable database of RefSeq genes. • 37965 UniProtKB/Swiss-Prot • Q9W107
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Aminoacyl-tRNA synthetase, class I, conserved site (IPR001412) Aminoacyl-tRNA synthetase, class Ic (IPR002305) Tyrosine-tRNA ligase (IPR002307) Tyrosine-tRNA ligase, bacterial-type (IPR024088) Tyrosine-tRNA ligase, bacterial-type, type 1 (IPR024107) Rossmann-like alpha/beta/alpha sandwich fold (IPR014729) RNA-binding S4 domain (IPR002942) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GM10508
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0035064 DroID - A comprehensive database of gene and protein interactions. • FBgn0035064 DRSC - Results from RNAi screens. • FBgn0035064 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035064 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG16912-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0035064 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37965 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37965 modMine - Data generated by the modENCODE project. • FBgn0035064
Synonyms & Secondary IDs ( 7 )
Reported As
Symbol Synonym	Aatm (Meiklejohn et al., 2013) Aats-tyr-m (Meiklejohn et al., 2013) anon-EST:fe1E12   CG16912 (Meiklejohn et al., 2013, Molnar et al., 2006, Keleman et al., 2009.8.5, Japanese National Institute of Genetics, 2012.5.21) unnamed (Schmid and Tautz, 1997)
Name Synonym	anon-fast-evolving-1E12   mitochondrial tyrosyl-tRNA synthetase
Secondary FlyBase IDs
	FBgn0025256
References ( 18 )
Research paper	Meiklejohn et al., 2013, PLoS Genet. 9(1): e1003238 An Incompatibility between a Mitochondrial tRNA and Its Nuclear-Encoded tRNA Synthetase Compromises Development and Fitness in Drosophila. [FBrf0220717] Molnar et al., 2006, Genetics 174(3): 1635--1659 A gain-of-function screen identifying genes required for vein formation in the Drosophila melanogaster wing. [FBrf0195387] Herr and Harris, 2004, FEBS Lett. 572(1-3): 147--153 Close head-to-head juxtaposition of genes favors their coordinate regulation in Drosophila melanogaster. [FBrf0179781] Schmid and Tautz, 1997, Proc. Natl. Acad. Sci. U.S.A. 94(18): 9746--9750 A screen for fast evolving genes from Drosophila. [FBrf0098343]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Bellen, 2009.5.5, BDGP_2009_0507.GenExel.xml BDGP_2009_0507.GenExel.xml [FBrf0207859] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Bayraktaroglu, 2000.11.2, Current list of possibly CG-able known genes. Current list of possibly CG-able known genes. [FBrf0131225] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
Protein sequence record	Swiss-Prot Project Members, 2004.10.25, UniProtKB: Q9W107 Probable tyrosyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS). [FBrf0182209]
Curated genome annotation	Gelbart, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126667]