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Gene Dmel\CG13876

General Information
Symbol	Dmel\CG13876	Species	D. melanogaster
Name		Annotation symbol	CG13876
Feature type	protein_coding_gene	FlyBase ID	FBgn0035109
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	61B2-61B2	Sequence location	3L:206,134..207,527 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG13876 (FBgn0035109). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: primary amine oxidase activity; copper ion binding; quinone binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: oxidation-reduction process; amine metabolic process. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Copper amine oxidase. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1638975_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG13876. Gene sequence location is 3L:206134..207527.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features HFA08346 BKN21954
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 61B2-61B2   Limits computationally determined from genome sequence between P{PZ}trh10512 and P{EP}EP3104EP3104
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG13876 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG13876-RA FBtr0072484  NM_138165   1337   287
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG13876-PA   FBpp0072386   32.4   287   5.59     NP_612009   AAF47348
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Copper amine oxidase (IPR000269)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014296 AAF47348   BH759232   BT099752   CK661519   CO343091
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9W0T9
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0035109    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0035109 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0035109 expression level Developmental Stage   Expression Level embryo 00-02hr    1032 embryo 02-04hr    915 embryo 04-06hr    1035 embryo 06-08hr    740 embryo 08-10hr    649 embryo 10-12hr    611 embryo 12-14hr    389 embryo 14-16hr    334 embryo 16-18hr    404 embryo 18-20hr    272 embryo 20-22hr    393 embryo 22-24hr    465 larva L1    255 larva L2    359 larva L3 12hr old    401 larva L3 puffstage 1-2    495 larva L3 puffstage 3-6    547 larva L3 puffstage 7-9    774 white prepupae new    639 white prepupae 12hr    618 white prepupae 24hr    630 pupae 2d postWPP    555 pupae 3d postWPP    460 pupae 4d postWPP    355 adult male 01day    527 adult male 05day    671 adult male 30day    521 adult female 01day    384 adult female 05day    696 adult female 30day    711 Expression Level Scale  None   Extremely low   Very low   Low   Moderate  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1032) embryo 02-04hr  (915) embryo 04-06hr  (1035) embryo 06-08hr  (740) embryo 08-10hr  (649) embryo 10-12hr  (611) embryo 12-14hr  (389) embryo 14-16hr  (334) embryo 16-18hr  (404) embryo 18-20hr  (272) embryo 20-22hr  (393) embryo 22-24hr  (465) larva L1  (255) larva L2  (359) larva L3 12hr old  (401) larva L3 puffstage 1-2  (495) larva L3 puffstage 3-6  (547) larva L3 puffstage 7-9  (774) white prepupae new  (639) white prepupae 12hr  (618) white prepupae 24hr  (630) pupae 2d postWPP  (555) pupae 3d postWPP  (460) pupae 4d postWPP  (355) adult male 01day  (527) adult male 05day  (671) adult male 30day  (521) adult female 01day  (384) adult female 05day  (696) adult female 30day  (711) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1032 embryo 02-04hr    915 embryo 04-06hr    1035 embryo 06-08hr    740 embryo 08-10hr    649 embryo 10-12hr    611 embryo 12-14hr    389 embryo 14-16hr    334 embryo 16-18hr    404 embryo 18-20hr    272 embryo 20-22hr    393 embryo 22-24hr    465 larva L1    255 larva L2    359 larva L3 12hr old    401 larva L3 puffstage 1-2    495 larva L3 puffstage 3-6    547 larva L3 puffstage 7-9    774 white prepupae new    639 white prepupae 12hr    618 white prepupae 24hr    630 pupae 2d postWPP    555 pupae 3d postWPP    460 pupae 4d postWPP    355 adult male 01day    527 adult male 05day    671 adult male 30day    521 adult female 01day    384 adult female 05day    696 adult female 30day    711 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1032 embryo 02-04hr    915 embryo 04-06hr    1035 embryo 06-08hr    740 embryo 08-10hr    649 embryo 10-12hr    611 embryo 12-14hr    389 embryo 14-16hr    334 embryo 16-18hr    404 embryo 18-20hr    272 embryo 20-22hr    393 embryo 22-24hr    465 larva L1    255 larva L2    359 larva L3 12hr old    401 larva L3 puffstage 1-2    495 larva L3 puffstage 3-6    547 larva L3 puffstage 7-9    774 white prepupae new    639 white prepupae 12hr    618 white prepupae 24hr    630 pupae 2d postWPP    555 pupae 3d postWPP    460 pupae 4d postWPP    355 adult male 01day    527 adult male 05day    671 adult male 30day    521 adult female 01day    384 adult female 05day    696 adult female 30day    711 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1032 embryo 02-04hr    915 embryo 04-06hr    1035 embryo 06-08hr    740 embryo 08-10hr    649 embryo 10-12hr    611 embryo 12-14hr    389 embryo 14-16hr    334 embryo 16-18hr    404 embryo 18-20hr    272 embryo 20-22hr    393 embryo 22-24hr    465 larva L1    255 larva L2    359 larva L3 12hr old    401 larva L3 puffstage 1-2    495 larva L3 puffstage 3-6    547 larva L3 puffstage 7-9    774 white prepupae new    639 white prepupae 12hr    618 white prepupae 24hr    630 pupae 2d postWPP    555 pupae 3d postWPP    460 pupae 4d postWPP    355 adult male 01day    527 adult male 05day    671 adult male 30day    521 adult female 01day    384 adult female 05day    696 adult female 30day    711 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0035109 expression level Developmental Stage   Expression Level embryo 00-02hr    1032 embryo 02-04hr    915 embryo 04-06hr    1035 embryo 06-08hr    740 embryo 08-10hr    649 embryo 10-12hr    611 embryo 12-14hr    389 embryo 14-16hr    334 embryo 16-18hr    404 embryo 18-20hr    272 embryo 20-22hr    393 embryo 22-24hr    465 larva L1    255 larva L2    359 larva L3 12hr old    401 larva L3 puffstage 1-2    495 larva L3 puffstage 3-6    547 larva L3 puffstage 7-9    774 white prepupae new    639 white prepupae 12hr    618 white prepupae 24hr    630 pupae 2d postWPP    555 pupae 3d postWPP    460 pupae 4d postWPP    355 adult male 01day    527 adult male 05day    671 adult male 30day    521 adult female 01day    384 adult female 05day    696 adult female 30day    711 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1032) embryo 02-04hr  (915) embryo 04-06hr  (1035) embryo 06-08hr  (740) embryo 08-10hr  (649) embryo 10-12hr  (611) embryo 12-14hr  (389) embryo 14-16hr  (334) embryo 16-18hr  (404) embryo 18-20hr  (272) embryo 20-22hr  (393) embryo 22-24hr  (465) larva L1  (255) larva L2  (359) larva L3 12hr old  (401) larva L3 puffstage 1-2  (495) larva L3 puffstage 3-6  (547) larva L3 puffstage 7-9  (774) white prepupae new  (639) white prepupae 12hr  (618) white prepupae 24hr  (630) pupae 2d postWPP  (555) pupae 3d postWPP  (460) pupae 4d postWPP  (355) adult male 01day  (527) adult male 05day  (671) adult male 30day  (521) adult female 01day  (384) adult female 05day  (696) adult female 30day  (711) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1032 embryo 02-04hr    915 embryo 04-06hr    1035 embryo 06-08hr    740 embryo 08-10hr    649 embryo 10-12hr    611 embryo 12-14hr    389 embryo 14-16hr    334 embryo 16-18hr    404 embryo 18-20hr    272 embryo 20-22hr    393 embryo 22-24hr    465 larva L1    255 larva L2    359 larva L3 12hr old    401 larva L3 puffstage 1-2    495 larva L3 puffstage 3-6    547 larva L3 puffstage 7-9    774 white prepupae new    639 white prepupae 12hr    618 white prepupae 24hr    630 pupae 2d postWPP    555 pupae 3d postWPP    460 pupae 4d postWPP    355 adult male 01day    527 adult male 05day    671 adult male 30day    521 adult female 01day    384 adult female 05day    696 adult female 30day    711 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1032 embryo 02-04hr    915 embryo 04-06hr    1035 embryo 06-08hr    740 embryo 08-10hr    649 embryo 10-12hr    611 embryo 12-14hr    389 embryo 14-16hr    334 embryo 16-18hr    404 embryo 18-20hr    272 embryo 20-22hr    393 embryo 22-24hr    465 larva L1    255 larva L2    359 larva L3 12hr old    401 larva L3 puffstage 1-2    495 larva L3 puffstage 3-6    547 larva L3 puffstage 7-9    774 white prepupae new    639 white prepupae 12hr    618 white prepupae 24hr    630 pupae 2d postWPP    555 pupae 3d postWPP    460 pupae 4d postWPP    355 adult male 01day    527 adult male 05day    671 adult male 30day    521 adult female 01day    384 adult female 05day    696 adult female 30day    711 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1032 embryo 02-04hr    915 embryo 04-06hr    1035 embryo 06-08hr    740 embryo 08-10hr    649 embryo 10-12hr    611 embryo 12-14hr    389 embryo 14-16hr    334 embryo 16-18hr    404 embryo 18-20hr    272 embryo 20-22hr    393 embryo 22-24hr    465 larva L1    255 larva L2    359 larva L3 12hr old    401 larva L3 puffstage 1-2    495 larva L3 puffstage 3-6    547 larva L3 puffstage 7-9    774 white prepupae new    639 white prepupae 12hr    618 white prepupae 24hr    630 pupae 2d postWPP    555 pupae 3d postWPP    460 pupae 4d postWPP    355 adult male 01day    527 adult male 05day    671 adult male 30day    521 adult female 01day    384 adult female 05day    696 adult female 30day    711 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0035109    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0035109 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0035109 expression level Tissue   Expression Level Larval Central Nervous System    45.65 Larval Midgut    48.6 Larval Hindgut    41.2 Larval Malpighian Tubules    55.6 Larval Fat Body    82.8 Larval Salivary Gland    37 Larval Trachea    47.925 Larval Carcass    37.45 Adult Head    31.3 Adult Eye    44.425 Adult Brain    27.6 Adult Thoracic-Abdominal Ganglion    33.6 Adult Crop    36.8 Adult Midgut    43.7 Adult Hindgut    37.2 Adult Malpighian Tubules    30.6 Adult Fat Body    46.9 Adult Salivary Gland    35.9 Adult Heart    41.175 Adult VirginFemale Spermatheca    23.1 Adult InseminatedFemale Spermatheca    23.7 Adult Ovary    68.1 Adult Testis    49.5 Adult Male Accessory Gland    28.7 Adult Carcass    43 Expression Level Scale  None   Low  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    45.65 Larval Midgut    48.6 Larval Hindgut    41.2 Larval Malpighian Tubules    55.6 Larval Fat Body    82.8 Larval Salivary Gland    37 Larval Trachea    47.925 Larval Carcass    37.45 Adult Head    31.3 Adult Eye    44.425 Adult Brain    27.6 Adult Thoracic-Abdominal Ganglion    33.6 Adult Crop    36.8 Adult Midgut    43.7 Adult Hindgut    37.2 Adult Malpighian Tubules    30.6 Adult Fat Body    46.9 Adult Salivary Gland    35.9 Adult Heart    41.175 Adult VirginFemale Spermatheca    23.1 Adult InseminatedFemale Spermatheca    23.7 Adult Ovary    68.1 Adult Testis    49.5 Adult Male Accessory Gland    28.7 Adult Carcass    43 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    45.65 Larval Midgut    48.6 Larval Hindgut    41.2 Larval Malpighian Tubules    55.6 Larval Fat Body    82.8 Larval Salivary Gland    37 Larval Trachea    47.925 Larval Carcass    37.45 Adult Head    31.3 Adult Eye    44.425 Adult Brain    27.6 Adult Thoracic-Abdominal Ganglion    33.6 Adult Crop    36.8 Adult Midgut    43.7 Adult Hindgut    37.2 Adult Malpighian Tubules    30.6 Adult Fat Body    46.9 Adult Salivary Gland    35.9 Adult Heart    41.175 Adult VirginFemale Spermatheca    23.1 Adult InseminatedFemale Spermatheca    23.7 Adult Ovary    68.1 Adult Testis    49.5 Adult Male Accessory Gland    28.7 Adult Carcass    43 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    45.65 Larval Midgut    48.6 Larval Hindgut    41.2 Larval Malpighian Tubules    55.6 Larval Fat Body    82.8 Larval Salivary Gland    37 Larval Trachea    47.925 Larval Carcass    37.45 Adult Head    31.3 Adult Eye    44.425 Adult Brain    27.6 Adult Thoracic-Abdominal Ganglion    33.6 Adult Crop    36.8 Adult Midgut    43.7 Adult Hindgut    37.2 Adult Malpighian Tubules    30.6 Adult Fat Body    46.9 Adult Salivary Gland    35.9 Adult Heart    41.175 Adult VirginFemale Spermatheca    23.1 Adult InseminatedFemale Spermatheca    23.7 Adult Ovary    68.1 Adult Testis    49.5 Adult Male Accessory Gland    28.7 Adult Carcass    43 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0035109 expression level Tissue   Expression Level Larval Central Nervous System    45.65 Larval Midgut    48.6 Larval Hindgut    41.2 Larval Malpighian Tubules    55.6 Larval Fat Body    82.8 Larval Salivary Gland    37 Larval Trachea    47.925 Larval Carcass    37.45 Adult Head    31.3 Adult Eye    44.425 Adult Brain    27.6 Adult Thoracic-Abdominal Ganglion    33.6 Adult Crop    36.8 Adult Midgut    43.7 Adult Hindgut    37.2 Adult Malpighian Tubules    30.6 Adult Fat Body    46.9 Adult Salivary Gland    35.9 Adult Heart    41.175 Adult VirginFemale Spermatheca    23.1 Adult InseminatedFemale Spermatheca    23.7 Adult Ovary    68.1 Adult Testis    49.5 Adult Male Accessory Gland    28.7 Adult Carcass    43 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    45.65 Larval Midgut    48.6 Larval Hindgut    41.2 Larval Malpighian Tubules    55.6 Larval Fat Body    82.8 Larval Salivary Gland    37 Larval Trachea    47.925 Larval Carcass    37.45 Adult Head    31.3 Adult Eye    44.425 Adult Brain    27.6 Adult Thoracic-Abdominal Ganglion    33.6 Adult Crop    36.8 Adult Midgut    43.7 Adult Hindgut    37.2 Adult Malpighian Tubules    30.6 Adult Fat Body    46.9 Adult Salivary Gland    35.9 Adult Heart    41.175 Adult VirginFemale Spermatheca    23.1 Adult InseminatedFemale Spermatheca    23.7 Adult Ovary    68.1 Adult Testis    49.5 Adult Male Accessory Gland    28.7 Adult Carcass    43 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    45.65 Larval Midgut    48.6 Larval Hindgut    41.2 Larval Malpighian Tubules    55.6 Larval Fat Body    82.8 Larval Salivary Gland    37 Larval Trachea    47.925 Larval Carcass    37.45 Adult Head    31.3 Adult Eye    44.425 Adult Brain    27.6 Adult Thoracic-Abdominal Ganglion    33.6 Adult Crop    36.8 Adult Midgut    43.7 Adult Hindgut    37.2 Adult Malpighian Tubules    30.6 Adult Fat Body    46.9 Adult Salivary Gland    35.9 Adult Heart    41.175 Adult VirginFemale Spermatheca    23.1 Adult InseminatedFemale Spermatheca    23.7 Adult Ovary    68.1 Adult Testis    49.5 Adult Male Accessory Gland    28.7 Adult Carcass    43 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    45.65 Larval Midgut    48.6 Larval Hindgut    41.2 Larval Malpighian Tubules    55.6 Larval Fat Body    82.8 Larval Salivary Gland    37 Larval Trachea    47.925 Larval Carcass    37.45 Adult Head    31.3 Adult Eye    44.425 Adult Brain    27.6 Adult Thoracic-Abdominal Ganglion    33.6 Adult Crop    36.8 Adult Midgut    43.7 Adult Hindgut    37.2 Adult Malpighian Tubules    30.6 Adult Fat Body    46.9 Adult Salivary Gland    35.9 Adult Heart    41.175 Adult VirginFemale Spermatheca    23.1 Adult InseminatedFemale Spermatheca    23.7 Adult Ovary    68.1 Adult Testis    49.5 Adult Male Accessory Gland    28.7 Adult Carcass    43 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    31.3   NA  Eye    44.425   NA  Brain    27.6   45.65  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    33.6   NA  Crop    36.8   48.6  Midgut    43.7   41.2  Hindgut    37.2   55.6  Malpighian Tubules    30.6   82.8  Fat Body    46.9   37  Salivary Gland    35.9   NA  Heart    41.175   47.925  Trachea    NA   NA  VirginFemale Spermatheca    23.1   NA  InseminatedFemale Spermatheca    23.7   NA  Ovary    68.1   NA  Testis    49.5   NA  Male Accessory Gland    28.7   37.45  Carcass    43 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_23
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035109 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13876-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG13876GD8148 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG13876 Class Mutagen Stocks Known lesion CG13876KG00458 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG13876 Class Mutagen Stocks Known lesion CG13876GD8148 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG13876KK101888 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel6084 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8148} NA P{KK101888} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{SUPor-P}CG13876KG00458 NA
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term Evidence References
copper ion binding inferred from electronic annotation with InterPro:IPR000269 (FlyBase Curators et al., 2004-) primary amine oxidase activity inferred from electronic annotation with InterPro:IPR000269 (FlyBase Curators et al., 2004-) quinone binding inferred from electronic annotation with InterPro:IPR000269 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
amine metabolic process inferred from electronic annotation with InterPro:IPR000269 (FlyBase Curators et al., 2004-) oxidation-reduction process inferred from electronic annotation with InterPro:IPR000269 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG13876 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0035109
Orthologs
Genome-wide drosophilid orthologs	Dana\GF23870 Dere\GG14700 Dgri\GH15825 Dmoj\GI12607 Dper\GL16113 Dpse\GA12592 Dsec\GM14316 Dsim\GD13553 Dvir\GJ12730 Dyak\GE21063
Curated drosophilid orthologs	Dpse\GA12592
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL008561-PA Aedes aegypti (mosquito) AGAP006950-PA Anopheles gambiae (mosquito) 115219 Branchiostoma floridae (lancelet) ENSBTAP00000010480 Bos taurus (bovine) ENSCAFP00000012354 Canis familiaris (dog) ENSCINP00000011543 Ciona intestinalis (sea squirt) CPIJ006581 Culex pipens (mosquito) ENSCPOP00000007167 Cavia porcellus (guinea pig) ENSCSAVP00000005442 Ciona savignyi (sedentary tunicate) 307503 Daphnia pulex (daphnia) ENSECAP00000003539 Equus caballus (horse) ENSGACP00000008926 Gymnopilus aculeatus (mushroom) ENSGALP00000024797 Gallus gallus (chicken) ENSP00000322469 Homo sapiens (human) ISCW012982-PA Ixodes scapularis (deer tick) 128762 Lottia gigantea (owl limpet) ENSMODP00000021140 Monodelphis domestica (gray opossum) ENSMMUP00000028331 Macaca mulatta (rhesus monkey) ENSMUSP00000076255 Mus musculus (house mouse) 92321 Nematostella vectensis (starlet anemone) ENSOANP00000000779 Ornithorynchus anatinus (platypus) ENSORLP00000019852 Oryzias latipes (japanese killifish) ENSPPYP00000015253 Pongo pygmaeus (orangutan) ENSPTRP00000026112 Pan troglodytes (chimpanzee) ENSRNOP00000000911 Rattus norvegicus (norway rat) ENSRNOP00000015146 Rattus norvegicus (norway rat) XP_001180936.1 Strongylocentrotus purpuratus (purple sea urchin) XP_001184034.1 Strongylocentrotus purpuratus (purple sea urchin) XP_001193801.1 Strongylocentrotus purpuratus (purple sea urchin) XP_971646.1 Tribolium castaneum (red flour beetle) ENSTNIP00000006999 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000009075 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000016586 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • ISCW012982 FBgn0238343 FBgn0199966 FBgn0185263 FBgn0169241 JGI_V11_307503 FBgn0072638 FBgn0153717 FBgn0135364 FBgn0130130 FBgn0123296 FBgn0106956 FBgn0100864 CPIJ006581 ACYPI009238 ACYPI006117 AGAP006950 AAEL008561 GLEAN_06288
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	13671 y1 w67c23; P{SUPor-P}CG13876KG00458 ry506
VDRC	v108298 P{KK101888}VIE-260B v39817 w1118; P{GD8148}v39817 v39818 w1118; P{GD8148}v39818
Genomic Clones ( 2 )
	BACR11J11 BACR45O17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 3 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones	IP20593
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LP21085
Other clones	EP16103
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0035109 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38031
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_138165 RefSeq (Proteins) • NP_612009 DDBJ / EMBL / GenBank • AAF47348 BH759232 Entrez Gene - A searchable database of RefSeq genes. • 38031 UniProtKB/TrEMBL • Q9W0T9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Copper amine oxidase (IPR000269)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0035109 DRSC - Results from RNAi screens. • FBgn0035109 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035109 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13876-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0035109 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38031 InParanoid A subset of ortholog calls from InParanoid. • AAEL008561-PA Aedes aegypti (mosquito) AGAP006950-PA Anopheles gambiae (mosquito) 115219 Branchiostoma floridae (lancelet) ENSBTAP00000010480 Bos taurus (bovine) ENSCAFP00000012354 Canis familiaris (dog) ENSCINP00000011543 Ciona intestinalis (sea squirt) CPIJ006581 Culex pipens (mosquito) ENSCPOP00000007167 Cavia porcellus (guinea pig) ENSCSAVP00000005442 Ciona savignyi (sedentary tunicate) 307503 Daphnia pulex (daphnia) ENSECAP00000003539 Equus caballus (horse) ENSGACP00000008926 Gymnopilus aculeatus (mushroom) ENSGALP00000024797 Gallus gallus (chicken) ENSP00000322469 Homo sapiens (human) ISCW012982-PA Ixodes scapularis (deer tick) 128762 Lottia gigantea (owl limpet) ENSMODP00000021140 Monodelphis domestica (gray opossum) ENSMMUP00000028331 Macaca mulatta (rhesus monkey) ENSMUSP00000076255 Mus musculus (house mouse) 92321 Nematostella vectensis (starlet anemone) ENSOANP00000000779 Ornithorynchus anatinus (platypus) ENSORLP00000019852 Oryzias latipes (japanese killifish) ENSPPYP00000015253 Pongo pygmaeus (orangutan) ENSPTRP00000026112 Pan troglodytes (chimpanzee) ENSRNOP00000000911 Rattus norvegicus (norway rat) ENSRNOP00000015146 Rattus norvegicus (norway rat) XP_001180936.1 Strongylocentrotus purpuratus (purple sea urchin) XP_001184034.1 Strongylocentrotus purpuratus (purple sea urchin) XP_001193801.1 Strongylocentrotus purpuratus (purple sea urchin) XP_971646.1 Tribolium castaneum (red flour beetle) ENSTNIP00000006999 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000009075 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000016586 Xenopus tropicalis (frog) modMine - Data generated by the modENCODE project. • FBgn0035109 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • ISCW012982 FBgn0238343 FBgn0199966 FBgn0185263 FBgn0169241 JGI_V11_307503 FBgn0072638 FBgn0153717 FBgn0135364 FBgn0130130 FBgn0123296 FBgn0106956 FBgn0100864 CPIJ006581 ACYPI009238 ACYPI006117 AGAP006950 AAEL008561 GLEAN_06288
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG13876 (Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
References ( 8 )
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
Computer file	Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177]