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Gene Dmel\CG16940

General Information
Symbol	Dmel\CG16940	Species	D. melanogaster
Name		Annotation symbol	CG16940
Feature type	protein_coding_gene	FlyBase ID	FBgn0035111
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	61B2-61B2	Sequence location	3L:212,709..216,479 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG16940 (FBgn0035111). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: exoribonuclease II activity. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Ribonuclease II/R; Ribonuclease II/R, conserved site. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1636520_s_at aligns to a genomic region shared by exons of 3 FlyBase-annotated genes; hence it is impossible to interpret the expression pattern and levels of CG16940 expression signal. See the GBrowse view of CG16940 to determine the overlapping gene(s). Gene sequence location is 3L:212709..216479.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 61B2-61B2   Limits computationally determined from genome sequence between P{PZ}trh10512 and P{EP}EP3104EP3104
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG16940 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.44 Low-frequency junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG16940-RA FBtr0072487  NM_138168   3605   1032 CG16940-RC FBtr0072486  NM_167805   3546   1044
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG16940-PA   FBpp0072389   116.8   1032   8.27     NP_612012   AAF47351 CG16940-PC   FBpp0072388   118.2   1044   8.27     NP_728490   AAN11425
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ribonuclease II/R (IPR001900) Ribonuclease II/R, conserved site (IPR022966)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA539400   AA539401   AE014296 AAF47351   AE014296 AAN11425   AI260880   AI388636   AI512365   AI517905   AI518465   AI519216   AI946185   AW943403   AY058669 AAL13898   BE976532   BF488576   BF498771   BF498782   BH615059   BI164108   BI171908   BI227599   BI231916   BI235397   BI241912   BI357156   BI484534   BT015237   BT044564   CK658861   CO271339   CO285239   CO297715   CO300936   CO301992   CO312003   CO312856   CO319666   CO324105   CO324655   CO333865   CO340975   EC065064   EC073969   EC074135   EC075623   EC078498   EC085469   EC086313   EC087943   EC090788   EC222793   EC223734   EC225413   EC237163   EC244150   EC253425   EL884049
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8IRJ7 Q9W0T7
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    208.55 Larval Midgut    87.8 Larval Hindgut    143.4 Larval Malpighian Tubules    129.7 Larval Fat Body    183.6 Larval Salivary Gland    245.3 Larval Trachea    213.05 Larval Carcass    115.125 Adult Head    119.3 Adult Eye    128 Adult Brain    166 Adult Thoracic-Abdominal Ganglion    150 Adult Crop    167.7 Adult Midgut    94.7 Adult Hindgut    126.1 Adult Malpighian Tubules    86.8 Adult Fat Body    110 Adult Salivary Gland    160 Adult Heart    129.725 Adult VirginFemale Spermatheca    134.6 Adult InseminatedFemale Spermatheca    168.9 Adult Ovary    438.2 Adult Testis    357.9 Adult Male Accessory Gland    215 Adult Carcass    92.9 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    208.55 Larval Midgut    87.8 Larval Hindgut    143.4 Larval Malpighian Tubules    129.7 Larval Fat Body    183.6 Larval Salivary Gland    245.3 Larval Trachea    213.05 Larval Carcass    115.125 Adult Head    119.3 Adult Eye    128 Adult Brain    166 Adult Thoracic-Abdominal Ganglion    150 Adult Crop    167.7 Adult Midgut    94.7 Adult Hindgut    126.1 Adult Malpighian Tubules    86.8 Adult Fat Body    110 Adult Salivary Gland    160 Adult Heart    129.725 Adult VirginFemale Spermatheca    134.6 Adult InseminatedFemale Spermatheca    168.9 Adult Ovary    438.2 Adult Testis    357.9 Adult Male Accessory Gland    215 Adult Carcass    92.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    208.55 Larval Midgut    87.8 Larval Hindgut    143.4 Larval Malpighian Tubules    129.7 Larval Fat Body    183.6 Larval Salivary Gland    245.3 Larval Trachea    213.05 Larval Carcass    115.125 Adult Head    119.3 Adult Eye    128 Adult Brain    166 Adult Thoracic-Abdominal Ganglion    150 Adult Crop    167.7 Adult Midgut    94.7 Adult Hindgut    126.1 Adult Malpighian Tubules    86.8 Adult Fat Body    110 Adult Salivary Gland    160 Adult Heart    129.725 Adult VirginFemale Spermatheca    134.6 Adult InseminatedFemale Spermatheca    168.9 Adult Ovary    438.2 Adult Testis    357.9 Adult Male Accessory Gland    215 Adult Carcass    92.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    208.55 Larval Midgut    87.8 Larval Hindgut    143.4 Larval Malpighian Tubules    129.7 Larval Fat Body    183.6 Larval Salivary Gland    245.3 Larval Trachea    213.05 Larval Carcass    115.125 Adult Head    119.3 Adult Eye    128 Adult Brain    166 Adult Thoracic-Abdominal Ganglion    150 Adult Crop    167.7 Adult Midgut    94.7 Adult Hindgut    126.1 Adult Malpighian Tubules    86.8 Adult Fat Body    110 Adult Salivary Gland    160 Adult Heart    129.725 Adult VirginFemale Spermatheca    134.6 Adult InseminatedFemale Spermatheca    168.9 Adult Ovary    438.2 Adult Testis    357.9 Adult Male Accessory Gland    215 Adult Carcass    92.9 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    208.55 Larval Midgut    87.8 Larval Hindgut    143.4 Larval Malpighian Tubules    129.7 Larval Fat Body    183.6 Larval Salivary Gland    245.3 Larval Trachea    213.05 Larval Carcass    115.125 Adult Head    119.3 Adult Eye    128 Adult Brain    166 Adult Thoracic-Abdominal Ganglion    150 Adult Crop    167.7 Adult Midgut    94.7 Adult Hindgut    126.1 Adult Malpighian Tubules    86.8 Adult Fat Body    110 Adult Salivary Gland    160 Adult Heart    129.725 Adult VirginFemale Spermatheca    134.6 Adult InseminatedFemale Spermatheca    168.9 Adult Ovary    438.2 Adult Testis    357.9 Adult Male Accessory Gland    215 Adult Carcass    92.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    208.55 Larval Midgut    87.8 Larval Hindgut    143.4 Larval Malpighian Tubules    129.7 Larval Fat Body    183.6 Larval Salivary Gland    245.3 Larval Trachea    213.05 Larval Carcass    115.125 Adult Head    119.3 Adult Eye    128 Adult Brain    166 Adult Thoracic-Abdominal Ganglion    150 Adult Crop    167.7 Adult Midgut    94.7 Adult Hindgut    126.1 Adult Malpighian Tubules    86.8 Adult Fat Body    110 Adult Salivary Gland    160 Adult Heart    129.725 Adult VirginFemale Spermatheca    134.6 Adult InseminatedFemale Spermatheca    168.9 Adult Ovary    438.2 Adult Testis    357.9 Adult Male Accessory Gland    215 Adult Carcass    92.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    208.55 Larval Midgut    87.8 Larval Hindgut    143.4 Larval Malpighian Tubules    129.7 Larval Fat Body    183.6 Larval Salivary Gland    245.3 Larval Trachea    213.05 Larval Carcass    115.125 Adult Head    119.3 Adult Eye    128 Adult Brain    166 Adult Thoracic-Abdominal Ganglion    150 Adult Crop    167.7 Adult Midgut    94.7 Adult Hindgut    126.1 Adult Malpighian Tubules    86.8 Adult Fat Body    110 Adult Salivary Gland    160 Adult Heart    129.725 Adult VirginFemale Spermatheca    134.6 Adult InseminatedFemale Spermatheca    168.9 Adult Ovary    438.2 Adult Testis    357.9 Adult Male Accessory Gland    215 Adult Carcass    92.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    208.55 Larval Midgut    87.8 Larval Hindgut    143.4 Larval Malpighian Tubules    129.7 Larval Fat Body    183.6 Larval Salivary Gland    245.3 Larval Trachea    213.05 Larval Carcass    115.125 Adult Head    119.3 Adult Eye    128 Adult Brain    166 Adult Thoracic-Abdominal Ganglion    150 Adult Crop    167.7 Adult Midgut    94.7 Adult Hindgut    126.1 Adult Malpighian Tubules    86.8 Adult Fat Body    110 Adult Salivary Gland    160 Adult Heart    129.725 Adult VirginFemale Spermatheca    134.6 Adult InseminatedFemale Spermatheca    168.9 Adult Ovary    438.2 Adult Testis    357.9 Adult Male Accessory Gland    215 Adult Carcass    92.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    119.3   NA  Eye    128   NA  Brain    166   208.55  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    150   NA  Crop    167.7   87.8  Midgut    94.7   143.4  Hindgut    126.1   129.7  Malpighian Tubules    86.8   183.6  Fat Body    110   245.3  Salivary Gland    160   NA  Heart    129.725   213.05  Trachea    NA   NA  VirginFemale Spermatheca    134.6   NA  InseminatedFemale Spermatheca    168.9   NA  Ovary    438.2   NA  Testis    357.9   NA  Male Accessory Gland    215   115.125  Carcass    92.9 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3    11 central nervous system, pupae P8    8 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    15 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    11 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    52 ovary, mated 4-day female    42 testis, mated 4-day male    21 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3    11 central nervous system, pupae P8    8 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    15 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    11 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female  (52) ovary, mated 4-day female  (42) testis, mated 4-day male    21 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3    11 central nervous system, pupae P8    8 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    15 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    11 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    52 ovary, mated 4-day female    42 testis, mated 4-day male    21 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3    11 central nervous system, pupae P8    8 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    15 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    11 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    52 ovary, mated 4-day female    42 testis, mated 4-day male    21 accessory gland, mated 4-day male    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3    11 central nervous system, pupae P8    8 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    15 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    11 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    52 ovary, mated 4-day female    42 testis, mated 4-day male    21 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3    11 central nervous system, pupae P8    8 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    15 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    11 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female  (52) ovary, mated 4-day female  (42) testis, mated 4-day male    21 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3    11 central nervous system, pupae P8    8 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    15 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    11 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    52 ovary, mated 4-day female    42 testis, mated 4-day male    21 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3    11 central nervous system, pupae P8    8 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    10 head, mated 20-day male    15 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    11 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    52 ovary, mated 4-day female    42 testis, mated 4-day male    21 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, at stages throughout the pupal period, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    43 embryo 02-04hr    22 embryo 04-06hr    28 embryo 06-08hr    24 embryo 08-10hr    19 embryo 10-12hr    12 embryo 12-14hr    17 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    7 embryo 22-24hr    9 larva L1    9 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    15 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    28 pupae 3d postWPP    18 pupae 4d postWPP    12 adult male 01day    19 adult male 05day    22 adult male 30day    21 adult female 01day    18 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (43) embryo 02-04hr    22 embryo 04-06hr  (28) embryo 06-08hr    24 embryo 08-10hr    19 embryo 10-12hr    12 embryo 12-14hr    17 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    7 embryo 22-24hr    9 larva L1    9 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    15 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP  (28) pupae 3d postWPP    18 pupae 4d postWPP    12 adult male 01day    19 adult male 05day    22 adult male 30day    21 adult female 01day    18 adult female 05day  (33) adult female 30day  (32) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    43 embryo 02-04hr    22 embryo 04-06hr    28 embryo 06-08hr    24 embryo 08-10hr    19 embryo 10-12hr    12 embryo 12-14hr    17 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    7 embryo 22-24hr    9 larva L1    9 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    15 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    28 pupae 3d postWPP    18 pupae 4d postWPP    12 adult male 01day    19 adult male 05day    22 adult male 30day    21 adult female 01day    18 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    43 embryo 02-04hr    22 embryo 04-06hr    28 embryo 06-08hr    24 embryo 08-10hr    19 embryo 10-12hr    12 embryo 12-14hr    17 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    7 embryo 22-24hr    9 larva L1    9 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    15 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    28 pupae 3d postWPP    18 pupae 4d postWPP    12 adult male 01day    19 adult male 05day    22 adult male 30day    21 adult female 01day    18 adult female 05day    33 adult female 30day    32 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    43 embryo 02-04hr    22 embryo 04-06hr    28 embryo 06-08hr    24 embryo 08-10hr    19 embryo 10-12hr    12 embryo 12-14hr    17 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    7 embryo 22-24hr    9 larva L1    9 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    15 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    28 pupae 3d postWPP    18 pupae 4d postWPP    12 adult male 01day    19 adult male 05day    22 adult male 30day    21 adult female 01day    18 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (43) embryo 02-04hr    22 embryo 04-06hr  28 embryo 06-08hr    24 embryo 08-10hr    19 embryo 10-12hr    12 embryo 12-14hr    17 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    7 embryo 22-24hr    9 larva L1    9 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    15 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP  28 pupae 3d postWPP    18 pupae 4d postWPP    12 adult male 01day    19 adult male 05day    22 adult male 30day    21 adult female 01day    18 adult female 05day  (33) adult female 30day  32 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    43 embryo 02-04hr    22 embryo 04-06hr    28 embryo 06-08hr    24 embryo 08-10hr    19 embryo 10-12hr    12 embryo 12-14hr    17 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    7 embryo 22-24hr    9 larva L1    9 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    15 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    28 pupae 3d postWPP    18 pupae 4d postWPP    12 adult male 01day    19 adult male 05day    22 adult male 30day    21 adult female 01day    18 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    43 embryo 02-04hr    22 embryo 04-06hr    28 embryo 06-08hr    24 embryo 08-10hr    19 embryo 10-12hr    12 embryo 12-14hr    17 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    7 embryo 22-24hr    9 larva L1    9 larva L2    12 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    12 larva L3 puffstage 7-9    15 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    28 pupae 3d postWPP    18 pupae 4d postWPP    12 adult male 01day    19 adult male 05day    22 adult male 30day    21 adult female 01day    18 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    27 Schneider line 2 Sg4    16 embryonic 1182-4H    27 embryonic GM2    25 embryonic Kc167    19 embryonic S1    20 embryonic S3    28 leg disc CME L1    15 wing disc CME-W2    25 wing disc ML-DmD8    26 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    21 wing disc ML-DmD21    9 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    15 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    37 mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1    25 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    10 ovary fGS/OSS    22 ovary OSC    18 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (27) Schneider line 2 Sg4    16 embryonic 1182-4H  (27) embryonic GM2    25 embryonic Kc167    19 embryonic S1    20 embryonic S3  (28) leg disc CME L1    15 wing disc CME-W2    25 wing disc ML-DmD8  26 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    21 wing disc ML-DmD21    9 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    15 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5  (37) mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1    25 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    10 ovary fGS/OSS    22 ovary OSC    18 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    27 Schneider line 2 Sg4    16 embryonic 1182-4H    27 embryonic GM2    25 embryonic Kc167    19 embryonic S1    20 embryonic S3    28 leg disc CME L1    15 wing disc CME-W2    25 wing disc ML-DmD8    26 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    21 wing disc ML-DmD21    9 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    15 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    37 mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1    25 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    10 ovary fGS/OSS    22 ovary OSC    18 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    27 Schneider line 2 Sg4    16 embryonic 1182-4H    27 embryonic GM2    25 embryonic Kc167    19 embryonic S1    20 embryonic S3    28 leg disc CME L1    15 wing disc CME-W2    25 wing disc ML-DmD8    26 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    21 wing disc ML-DmD21    9 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    15 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    37 mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1    25 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    10 ovary fGS/OSS    22 ovary OSC    18 ovary OSS    8 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    27 Schneider line 2 Sg4    16 embryonic 1182-4H    27 embryonic GM2    25 embryonic Kc167    19 embryonic S1    20 embryonic S3    28 leg disc CME L1    15 wing disc CME-W2    25 wing disc ML-DmD8    26 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    21 wing disc ML-DmD21    9 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    15 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    37 mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1    25 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    10 ovary fGS/OSS    22 ovary OSC    18 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  27 Schneider line 2 Sg4    16 embryonic 1182-4H  27 embryonic GM2    25 embryonic Kc167    19 embryonic S1    20 embryonic S3  28 leg disc CME L1    15 wing disc CME-W2    25 wing disc ML-DmD8  26 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    21 wing disc ML-DmD21    9 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    15 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5  (37) mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1    25 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    10 ovary fGS/OSS    22 ovary OSC    18 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    27 Schneider line 2 Sg4    16 embryonic 1182-4H    27 embryonic GM2    25 embryonic Kc167    19 embryonic S1    20 embryonic S3    28 leg disc CME L1    15 wing disc CME-W2    25 wing disc ML-DmD8    26 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    21 wing disc ML-DmD21    9 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    15 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    37 mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1    25 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    10 ovary fGS/OSS    22 ovary OSC    18 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    27 Schneider line 2 Sg4    16 embryonic 1182-4H    27 embryonic GM2    25 embryonic Kc167    19 embryonic S1    20 embryonic S3    28 leg disc CME L1    15 wing disc CME-W2    25 wing disc ML-DmD8    26 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    21 wing disc ML-DmD21    9 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    15 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    37 mixed discs ML-DmD4-c1    18 CNS ML-DmBG1-c1    25 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    10 ovary fGS/OSS    22 ovary OSC    18 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    6 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult    34 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    12 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    28 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    28 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    6 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult  (34) Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    12 Ethanol 2.5% 3 hrs, larvae L3  (31) Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (28) Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult  (28) Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    6 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult    34 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    12 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    28 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    28 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    6 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult    34 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    12 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    28 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    28 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    6 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult    34 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    12 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    28 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    28 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    6 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult  (34) Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    12 Ethanol 2.5% 3 hrs, larvae L3  31 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  28 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult  28 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    6 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult    34 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    12 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    28 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    28 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    6 heat shock, 4-day adult    14 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult    34 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    4 Zinc 4.5 mM 48 hrs, 4-day adult    12 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    28 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    28 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_21 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	BDGP expression data • LD37985 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035111 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG16940-RB
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of CG16940 Class Mutagen Stocks Known lesion CG16940G14781 P-element activity 1 -- CG16940G4736 P-element activity 1 -- CG16940KG02284 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG16940 Class Mutagen Stocks Known lesion CG16940GD9240 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG16940KK105902 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel6084 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD9240} NA P{KK105902} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{SUPor-P}CG16940KG02284 NA insertion of mobile activating element P{EP}thoc7G4736 NA P{EP}thoc7G14781 NA P{XP}thoc7d05792 NA
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
exoribonuclease II activity inferred from sequence or structural similarity with EMBL:Z99259 (FlyBase, 1992-) RNA binding inferred from electronic annotation with InterPro:IPR001900 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
cytoplasmic exosome (RNase complex) inferred from sequence or structural similarity with EMBL:Z99259 (FlyBase, 1992-) nuclear exosome (RNase complex) inferred from sequence or structural similarity with EMBL:Z99259 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG16940 - CG10496 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - CG1091 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) CG16940 - CG10934 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - CG14718 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - CG2121 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - CG31637 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - CG5196 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - CG5805 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - CG6652 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - CG7137 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - CalpA anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - Chi anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - Ef1α100E anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - Hakai anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - Moca-cyp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - Pi3K59F anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - Pof anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - Pten anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - Rho1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - RpL19 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - RpLP0 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - Sbp2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - Ubx anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - alt experimental knowledge based (Guruharsha et al., 2011) CG16940 - capu anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - crn anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - fd59A anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - grau anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16940 - tkv anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG16940 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0035111 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38034
Orthologs
OrthoDB Orthologs (42) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG641QWR Dipteran inclusive ortholog search EOG64F6J3 Insect inclusive ortholog search EOG6N0394 Arthropod inclusive ortholog search EOG62JM6M Metazoa inclusive ortholog search EOG69SK0D
Orthologs in Drosophila Species (EOG641QWR)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG16940     Drosophila simulans   Dsim\GD13554 Y   Drosophila sechellia   Dsec\GM14317 Y   Drosophila erecta   Dere\GG14701 Y   Drosophila yakuba   Dyak\GE21064 Y   Drosophila ananassae   Dana\GF24745 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA14227 Y   Drosophila persimilis   Dper\GL16114 Y   Drosophila willistoni   Dwil\GK11362 Y   Drosophila virilis   Dvir\GJ12519     Drosophila virilis   Dvir\GJ12662 Y   Drosophila mojavensis   Dmoj\GI12678 Y   Drosophila grimshawi   Dgri\GH15630 Y
Orthologs in non-Drosophila Dipterans (EOG64F6J3)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL001397   Anopheles gambiae Malaria mosquito  Agam\AGAP007395   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ015894
Orthologs in non-Dipteran Insects (EOG6N0394)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC552355   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG004346   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH27241   Atta cephalotes Leafcutter ant  Acep\ACEP13630   Camponotus floridanus Florida carpenter ant  Cflo\CFLO20714   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL18408   Linepithema humile Argentine ant  Lhum\LH25875   Linepithema humile Argentine ant  Lhum\LH25878   Pogonomyrmex barbatus Red harvester ant  Pbar\PB20333   Solenopsis invicta Red fire ant  Sinv\SINV24190   Acyrthosiphon pisum Pea aphid  Apim\ACYPI004574   Bombyx mori Silkmoth  Bmor\BGIBMGA011711   Pediculus humanus Human body louse  Phum\PHUM521130   Tribolium castaneum Red flour beetle  Tcas\TC006327   Tribolium castaneum Red flour beetle  Tcas\TC006328
Orthologs in non-Insect Arthropods (EOG62JM6M)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_229774   Ixodes scapularis Deer tick  Isca\ISCW005218
Orthologs in non-Arthropod Metazoa (EOG69SK0D)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\F48E8.6   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_008010gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_004575gn   Danio rerio Zebrafish  Drer\OTTDARG00000023689   Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000033647   Gallus gallus Domestic chicken  Ggal\DIS3L2   Mus musculus House mouse  Mmus\ENSMUSG00000053333   Rattus norvegicus Norway rat  Rnor\Dis3l2   Homo sapiens Human  Hsap\ENSG00000144535
Human Orthologs (1)
Gene OMIM HGNC Hsap\ENSG00000144535
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD13554 Drosophila sechellia Dsec\GM14317 Drosophila erecta Dere\GG14701 Drosophila yakuba Dyak\GE21064 Drosophila ananassae Dana\GF24745 Drosophila pseudoobscura pseudoobscura Dpse\GA14227 Drosophila persimilis Dper\GL16114 Drosophila willistoni Dwil\GK11362 Drosophila virilis Dvir\GJ12662 Drosophila mojavensis Dmoj\GI12678 Drosophila grimshawi Dgri\GH15630
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	13307 y1; P{SUPor-P}CG16940KG02284 ry506 27473 y1 w*; P{EP}thoc7G4736 CG16940G4736/TM3, Sb1 Ser1 28405 y1 w*; P{EP}thoc7G14781 CG16940G14781/TM3, Sb1 Ser1
VDRC	v100322 P{KK105902}VIE-260B v51853 w1118; P{GD9240}v51853 v51854 w1118; P{GD9240}v51854
Genomic Clones ( 2 )
	BACR11J11 BACR45O17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 50 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD37985 RE03681
Other clones	FI04463
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT13242 AT13253 AT24043 GH19594 LD17503 LD17505 LD38730 LD43043 LD44223 LP04873 LP16130 RE13806 RE24693 RE24890 RE31237 RE39113 RE43548 RE67649
Other clones	28223 52768 54728 55159 57124 65307 66722 79247 103985 105153 106763 175229 214565.21 282343 bs21h05 bs52g03 EK103102 EK168555 EK170410 EK179726 EK182840 EK192537 EK194450 EK227636 EK230247 EK279913 EK308214 EP11650 IP15418
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0035111 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38034
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_138168 NM_167805 RefSeq (Proteins) • NP_612012 NP_728490 DDBJ / EMBL / GenBank • AAF47351 AAL13898 AAN11425 AAN11426 AI518465 AI946185 AW943403 AY058669 BH615059 BI164108 Entrez Gene - A searchable database of RefSeq genes. • 38034 UniProtKB/TrEMBL • Q8IRJ7 Q9W0T7
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ribonuclease II/R (IPR001900) Ribonuclease II/R, conserved site (IPR022966) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD37985
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0035111 DRSC - Results from RNAi screens. • FBgn0035111 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035111 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG16940-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0035111 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38034 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38034 modMine - Data generated by the modENCODE project. • FBgn0035111
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG16940 (Wong et al., 2005, Keleman et al., 2009.8.5, Cernilogar et al., 2011)
Name Synonym
Secondary FlyBase IDs
References ( 18 )
Research paper	Cernilogar et al., 2011, Nature 480(7377): 391--395 Chromatin-associated RNA interference components contribute to transcriptional regulation in Drosophila. [FBrf0216979] Wong et al., 2005, Biochem. Biophys. Res. Commun. 337(2): 720--729 In vivo functional characterization of the SARS-Coronavirus 3a protein in Drosophila. [FBrf0189841]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] Guruharsha et al., 2011, Cell 147(3): Table S3. [FBrf0218395] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979]
Personal communication to FlyBase	Bellen, 2009.5.5, BDGP_2009_0507.GenExel.xml BDGP_2009_0507.GenExel.xml [FBrf0207859] Bellen, 2009.8.20, BDGP_2009_0825.GenExel.xml BDGP_2009_0825.GenExel.xml [FBrf0208536] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] Oliver, 2001.8.16, Genome Res.: File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). [FBrf0137492] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]