Gene Dmel\CG13896

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General Information

Symbol

Dmel\CG13896

Species

D. melanogaster

Name

Annotation symbol

CG13896

Feature type

protein_coding_gene

FlyBase ID

FBgn0035159

Gene Model Status

Current

Stock availability

5 publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

61C8-61C8

Sequence location

3L:710,820..711,850 [-]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG13896 (FBgn0035159). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1625505_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG13896. Gene sequence location is 3L:710820..711850.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

61C8-61C8

Limits computationally determined from genome sequence between P{PZ}l(3)05967⁰⁵⁹⁶⁷ and P{PZ}l(3)02640⁰²⁶⁴⁰

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG13896 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.45

Low-frequency RNA-seq exon junction(s) not annotated.

Annotated transcripts do not represent all supported alternative splices within 5' UTR.

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG13896-RA

FBtr0072602

NM_138212

1000

210

CG13896-RB

FBtr0290220

NM_001144395

972

210

CG13896-RC

FBtr0331770

NM_001274292

974

210

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG13896-PA

FBpp0072498

24.3

210

4.77

NP_612056

AAF47411

CG13896-PB

FBpp0288659

24.3

210

4.77

NP_001137867

ACL83223

CG13896-PC

FBpp0304157

24.3

210

4.77

NP_001261221

AGB93916

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q9W0N2

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

regulatory region

FBsf0000436266
3L:715,989..716,988

evidence=Reporter construct (in vivo)

(Rouault et al., 2010, Halfon, 2012.6.19)

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		56.1
Larval Midgut		14.9
Larval Hindgut		20.3
Larval Malpighian Tubules		30
Larval Fat Body		33.2
Larval Salivary Gland		19.7
Larval Trachea		43.575
Larval Carcass		19.95
Adult Head		18.2
Adult Eye		11.2
Adult Brain		22.6
Adult Thoracic-Abdominal Ganglion		30
Adult Crop		23.5
Adult Midgut		18.8
Adult Hindgut		14.8
Adult Malpighian Tubules		19.9
Adult Fat Body		7.9
Adult Salivary Gland		18.4
Adult Heart		12.3
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		5
Adult Ovary		44.1
Adult Testis		43.5
Adult Male Accessory Gland		7.9
Adult Carcass		13.6
Expression Level Scale		None Low

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		56.1
Larval Midgut		14.9
Larval Hindgut		20.3
Larval Malpighian Tubules		30
Larval Fat Body		33.2
Larval Salivary Gland		19.7
Larval Trachea		43.575
Larval Carcass		19.95
Adult Head		18.2
Adult Eye		11.2
Adult Brain		22.6
Adult Thoracic-Abdominal Ganglion		30
Adult Crop		23.5
Adult Midgut		18.8
Adult Hindgut		14.8
Adult Malpighian Tubules		19.9
Adult Fat Body		7.9
Adult Salivary Gland		18.4
Adult Heart		12.3
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		5
Adult Ovary		44.1
Adult Testis		43.5
Adult Male Accessory Gland		7.9
Adult Carcass		13.6
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		56.1
Larval Midgut		14.9
Larval Hindgut		20.3
Larval Malpighian Tubules		30
Larval Fat Body		33.2
Larval Salivary Gland		19.7
Larval Trachea		43.575
Larval Carcass		19.95
Adult Head		18.2
Adult Eye		11.2
Adult Brain		22.6
Adult Thoracic-Abdominal Ganglion		30
Adult Crop		23.5
Adult Midgut		18.8
Adult Hindgut		14.8
Adult Malpighian Tubules		19.9
Adult Fat Body		7.9
Adult Salivary Gland		18.4
Adult Heart		12.3
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		5
Adult Ovary		44.1
Adult Testis		43.5
Adult Male Accessory Gland		7.9
Adult Carcass		13.6
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		56.1
Larval Midgut		14.9
Larval Hindgut		20.3
Larval Malpighian Tubules		30
Larval Fat Body		33.2
Larval Salivary Gland		19.7
Larval Trachea		43.575
Larval Carcass		19.95
Adult Head		18.2
Adult Eye		11.2
Adult Brain		22.6
Adult Thoracic-Abdominal Ganglion		30
Adult Crop		23.5
Adult Midgut		18.8
Adult Hindgut		14.8
Adult Malpighian Tubules		19.9
Adult Fat Body		7.9
Adult Salivary Gland		18.4
Adult Heart		12.3
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		5
Adult Ovary		44.1
Adult Testis		43.5
Adult Male Accessory Gland		7.9
Adult Carcass		13.6
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		56.1
Larval Midgut		14.9
Larval Hindgut		20.3
Larval Malpighian Tubules		30
Larval Fat Body		33.2
Larval Salivary Gland		19.7
Larval Trachea		43.575
Larval Carcass		19.95
Adult Head		18.2
Adult Eye		11.2
Adult Brain		22.6
Adult Thoracic-Abdominal Ganglion		30
Adult Crop		23.5
Adult Midgut		18.8
Adult Hindgut		14.8
Adult Malpighian Tubules		19.9
Adult Fat Body		7.9
Adult Salivary Gland		18.4
Adult Heart		12.3
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		5
Adult Ovary		44.1
Adult Testis		43.5
Adult Male Accessory Gland		7.9
Adult Carcass		13.6
Expression Level Scale		None Low

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		56.1
Larval Midgut		14.9
Larval Hindgut		20.3
Larval Malpighian Tubules		30
Larval Fat Body		33.2
Larval Salivary Gland		19.7
Larval Trachea		43.575
Larval Carcass		19.95
Adult Head		18.2
Adult Eye		11.2
Adult Brain		22.6
Adult Thoracic-Abdominal Ganglion		30
Adult Crop		23.5
Adult Midgut		18.8
Adult Hindgut		14.8
Adult Malpighian Tubules		19.9
Adult Fat Body		7.9
Adult Salivary Gland		18.4
Adult Heart		12.3
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		5
Adult Ovary		44.1
Adult Testis		43.5
Adult Male Accessory Gland		7.9
Adult Carcass		13.6
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		56.1
Larval Midgut		14.9
Larval Hindgut		20.3
Larval Malpighian Tubules		30
Larval Fat Body		33.2
Larval Salivary Gland		19.7
Larval Trachea		43.575
Larval Carcass		19.95
Adult Head		18.2
Adult Eye		11.2
Adult Brain		22.6
Adult Thoracic-Abdominal Ganglion		30
Adult Crop		23.5
Adult Midgut		18.8
Adult Hindgut		14.8
Adult Malpighian Tubules		19.9
Adult Fat Body		7.9
Adult Salivary Gland		18.4
Adult Heart		12.3
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		5
Adult Ovary		44.1
Adult Testis		43.5
Adult Male Accessory Gland		7.9
Adult Carcass		13.6
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		56.1
Larval Midgut		14.9
Larval Hindgut		20.3
Larval Malpighian Tubules		30
Larval Fat Body		33.2
Larval Salivary Gland		19.7
Larval Trachea		43.575
Larval Carcass		19.95
Adult Head		18.2
Adult Eye		11.2
Adult Brain		22.6
Adult Thoracic-Abdominal Ganglion		30
Adult Crop		23.5
Adult Midgut		18.8
Adult Hindgut		14.8
Adult Malpighian Tubules		19.9
Adult Fat Body		7.9
Adult Salivary Gland		18.4
Adult Heart		12.3
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		5
Adult Ovary		44.1
Adult Testis		43.5
Adult Male Accessory Gland		7.9
Adult Carcass		13.6
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	no informative data
NA	Eye	no informative data
NA	Brain	22.6
56.1	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	30
NA	Crop	no informative data
no informative data	Midgut	no informative data
no informative data	Hindgut	no informative data
30	Malpighian Tubules	no informative data
no informative data	Fat Body	7.9
no informative data	Salivary Gland	no informative data
NA	Heart	12.3
43.575	Trachea	NA
NA	VirginFemale Spermatheca	no informative data
NA	InseminatedFemale Spermatheca	5
NA	Ovary	44.1
NA	Testis	43.5
NA	Male Accessory Gland	7.9
no informative data	Carcass	no informative data

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		1
head, virgin 4-day female		1
head, virgin 20-day female		1
head, mated 1-day female		1
head, mated 4-day female		1
head, mated 20-day female		0
head, mated 1-day male		1
head, mated 4-day male		2
head, mated 20-day male		2
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		6
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		1
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		2
fat body, pupae P8		0
carcass, larvae L3 wandering		4
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		6
testis, mated 4-day male		4
accessory gland, mated 4-day male		1
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		1
head, virgin 4-day female		1
head, virgin 20-day female		1
head, mated 1-day female		1
head, mated 4-day female		1
head, mated 20-day female		0
head, mated 1-day male		1
head, mated 4-day male		2
head, mated 20-day male		2
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		6
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		1
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		2
fat body, pupae P8		0
carcass, larvae L3 wandering		4
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		6
testis, mated 4-day male		4
accessory gland, mated 4-day male		1
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		1
head, virgin 4-day female		1
head, virgin 20-day female		1
head, mated 1-day female		1
head, mated 4-day female		1
head, mated 20-day female		0
head, mated 1-day male		1
head, mated 4-day male		2
head, mated 20-day male		2
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		6
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		1
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		2
fat body, pupae P8		0
carcass, larvae L3 wandering		4
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		6
testis, mated 4-day male		4
accessory gland, mated 4-day male		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		1
head, virgin 4-day female		1
head, virgin 20-day female		1
head, mated 1-day female		1
head, mated 4-day female		1
head, mated 20-day female		0
head, mated 1-day male		1
head, mated 4-day male		2
head, mated 20-day male		2
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		6
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		1
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		2
fat body, pupae P8		0
carcass, larvae L3 wandering		4
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		6
testis, mated 4-day male		4
accessory gland, mated 4-day male		1
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		1
head, virgin 4-day female		1
head, virgin 20-day female		1
head, mated 1-day female		1
head, mated 4-day female		1
head, mated 20-day female		0
head, mated 1-day male		1
head, mated 4-day male		2
head, mated 20-day male		2
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		6
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		1
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		2
fat body, pupae P8		0
carcass, larvae L3 wandering		4
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		6
testis, mated 4-day male		4
accessory gland, mated 4-day male		1
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		1
head, virgin 4-day female		1
head, virgin 20-day female		1
head, mated 1-day female		1
head, mated 4-day female		1
head, mated 20-day female		0
head, mated 1-day male		1
head, mated 4-day male		2
head, mated 20-day male		2
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		6
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		1
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		2
fat body, pupae P8		0
carcass, larvae L3 wandering		4
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		6
testis, mated 4-day male		4
accessory gland, mated 4-day male		1
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		1
head, virgin 4-day female		1
head, virgin 20-day female		1
head, mated 1-day female		1
head, mated 4-day female		1
head, mated 20-day female		0
head, mated 1-day male		1
head, mated 4-day male		2
head, mated 20-day male		2
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		6
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		1
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		2
fat body, pupae P8		0
carcass, larvae L3 wandering		4
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		6
testis, mated 4-day male		4
accessory gland, mated 4-day male		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		5
central nervous system, pupae P8		3
head, virgin 1-day female		1
head, virgin 4-day female		1
head, virgin 20-day female		1
head, mated 1-day female		1
head, mated 4-day female		1
head, mated 20-day female		0
head, mated 1-day male		1
head, mated 4-day male		2
head, mated 20-day male		2
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		6
digestive system, larvae L3 wandering		1
digestive system, 1-day adult		1
digestive system, 4-day adult		1
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		2
fat body, pupae P8		0
carcass, larvae L3 wandering		4
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		4
ovary, mated 4-day female		6
testis, mated 4-day male		4
accessory gland, mated 4-day male		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in adult female stages.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		10
embryo 02-04hr		7
embryo 04-06hr		5
embryo 06-08hr		9
embryo 08-10hr		12
embryo 10-12hr		10
embryo 12-14hr		11
embryo 14-16hr		5
embryo 16-18hr		5
embryo 18-20hr		3
embryo 20-22hr		4
embryo 22-24hr		5
larva L1		2
larva L2		3
larva L3 12hr old		2
larva L3 puffstage 1-2		5
larva L3 puffstage 3-6		6
larva L3 puffstage 7-9		10
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		11
pupae 2d postWPP		8
pupae 3d postWPP		3
pupae 4d postWPP		2
adult male 01day		3
adult male 05day		3
adult male 30day		3
adult female 01day		2
adult female 05day		6
adult female 30day		5
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		10
embryo 02-04hr		7
embryo 04-06hr		5
embryo 06-08hr		9
embryo 08-10hr		12
embryo 10-12hr		10
embryo 12-14hr		11
embryo 14-16hr		5
embryo 16-18hr		5
embryo 18-20hr		3
embryo 20-22hr		4
embryo 22-24hr		5
larva L1		2
larva L2		3
larva L3 12hr old		2
larva L3 puffstage 1-2		5
larva L3 puffstage 3-6		6
larva L3 puffstage 7-9		10
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		11
pupae 2d postWPP		8
pupae 3d postWPP		3
pupae 4d postWPP		2
adult male 01day		3
adult male 05day		3
adult male 30day		3
adult female 01day		2
adult female 05day		6
adult female 30day		5
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		10
embryo 02-04hr		7
embryo 04-06hr		5
embryo 06-08hr		9
embryo 08-10hr		12
embryo 10-12hr		10
embryo 12-14hr		11
embryo 14-16hr		5
embryo 16-18hr		5
embryo 18-20hr		3
embryo 20-22hr		4
embryo 22-24hr		5
larva L1		2
larva L2		3
larva L3 12hr old		2
larva L3 puffstage 1-2		5
larva L3 puffstage 3-6		6
larva L3 puffstage 7-9		10
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		11
pupae 2d postWPP		8
pupae 3d postWPP		3
pupae 4d postWPP		2
adult male 01day		3
adult male 05day		3
adult male 30day		3
adult female 01day		2
adult female 05day		6
adult female 30day		5
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		10
embryo 02-04hr		7
embryo 04-06hr		5
embryo 06-08hr		9
embryo 08-10hr		12
embryo 10-12hr		10
embryo 12-14hr		11
embryo 14-16hr		5
embryo 16-18hr		5
embryo 18-20hr		3
embryo 20-22hr		4
embryo 22-24hr		5
larva L1		2
larva L2		3
larva L3 12hr old		2
larva L3 puffstage 1-2		5
larva L3 puffstage 3-6		6
larva L3 puffstage 7-9		10
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		11
pupae 2d postWPP		8
pupae 3d postWPP		3
pupae 4d postWPP		2
adult male 01day		3
adult male 05day		3
adult male 30day		3
adult female 01day		2
adult female 05day		6
adult female 30day		5
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		10
embryo 02-04hr		7
embryo 04-06hr		5
embryo 06-08hr		9
embryo 08-10hr		12
embryo 10-12hr		10
embryo 12-14hr		11
embryo 14-16hr		5
embryo 16-18hr		5
embryo 18-20hr		3
embryo 20-22hr		4
embryo 22-24hr		5
larva L1		2
larva L2		3
larva L3 12hr old		2
larva L3 puffstage 1-2		5
larva L3 puffstage 3-6		6
larva L3 puffstage 7-9		10
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		11
pupae 2d postWPP		8
pupae 3d postWPP		3
pupae 4d postWPP		2
adult male 01day		3
adult male 05day		3
adult male 30day		3
adult female 01day		2
adult female 05day		6
adult female 30day		5
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		10
embryo 02-04hr		7
embryo 04-06hr		5
embryo 06-08hr		9
embryo 08-10hr		12
embryo 10-12hr		10
embryo 12-14hr		11
embryo 14-16hr		5
embryo 16-18hr		5
embryo 18-20hr		3
embryo 20-22hr		4
embryo 22-24hr		5
larva L1		2
larva L2		3
larva L3 12hr old		2
larva L3 puffstage 1-2		5
larva L3 puffstage 3-6		6
larva L3 puffstage 7-9		10
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		11
pupae 2d postWPP		8
pupae 3d postWPP		3
pupae 4d postWPP		2
adult male 01day		3
adult male 05day		3
adult male 30day		3
adult female 01day		2
adult female 05day		6
adult female 30day		5
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		10
embryo 02-04hr		7
embryo 04-06hr		5
embryo 06-08hr		9
embryo 08-10hr		12
embryo 10-12hr		10
embryo 12-14hr		11
embryo 14-16hr		5
embryo 16-18hr		5
embryo 18-20hr		3
embryo 20-22hr		4
embryo 22-24hr		5
larva L1		2
larva L2		3
larva L3 12hr old		2
larva L3 puffstage 1-2		5
larva L3 puffstage 3-6		6
larva L3 puffstage 7-9		10
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		11
pupae 2d postWPP		8
pupae 3d postWPP		3
pupae 4d postWPP		2
adult male 01day		3
adult male 05day		3
adult male 30day		3
adult female 01day		2
adult female 05day		6
adult female 30day		5
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		10
embryo 02-04hr		7
embryo 04-06hr		5
embryo 06-08hr		9
embryo 08-10hr		12
embryo 10-12hr		10
embryo 12-14hr		11
embryo 14-16hr		5
embryo 16-18hr		5
embryo 18-20hr		3
embryo 20-22hr		4
embryo 22-24hr		5
larva L1		2
larva L2		3
larva L3 12hr old		2
larva L3 puffstage 1-2		5
larva L3 puffstage 3-6		6
larva L3 puffstage 7-9		10
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		11
pupae 2d postWPP		8
pupae 3d postWPP		3
pupae 4d postWPP		2
adult male 01day		3
adult male 05day		3
adult male 30day		3
adult female 01day		2
adult female 05day		6
adult female 30day		5
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		2
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		6
embryonic S1		7
embryonic S3		5
leg disc CME L1		5
wing disc CME-W2		6
wing disc ML-DmD8		7
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		7
wing disc ML-DmD21		3
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		3
antennal disc ML-DmD20-c5		4
mixed discs ML-DmD4-c1		5
CNS ML-DmBG1-c1		10
CNS ML-DmBG2-c2		5
tumorous blood cells mbn2		9
ovary fGS/OSS		9
ovary OSC		7
ovary OSS		6
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		2
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		6
embryonic S1		7
embryonic S3		5
leg disc CME L1		5
wing disc CME-W2		6
wing disc ML-DmD8		7
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		7
wing disc ML-DmD21		3
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		3
antennal disc ML-DmD20-c5		4
mixed discs ML-DmD4-c1		5
CNS ML-DmBG1-c1		10
CNS ML-DmBG2-c2		5
tumorous blood cells mbn2		9
ovary fGS/OSS		9
ovary OSC		7
ovary OSS		6
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		2
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		6
embryonic S1		7
embryonic S3		5
leg disc CME L1		5
wing disc CME-W2		6
wing disc ML-DmD8		7
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		7
wing disc ML-DmD21		3
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		3
antennal disc ML-DmD20-c5		4
mixed discs ML-DmD4-c1		5
CNS ML-DmBG1-c1		10
CNS ML-DmBG2-c2		5
tumorous blood cells mbn2		9
ovary fGS/OSS		9
ovary OSC		7
ovary OSS		6
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		2
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		6
embryonic S1		7
embryonic S3		5
leg disc CME L1		5
wing disc CME-W2		6
wing disc ML-DmD8		7
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		7
wing disc ML-DmD21		3
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		3
antennal disc ML-DmD20-c5		4
mixed discs ML-DmD4-c1		5
CNS ML-DmBG1-c1		10
CNS ML-DmBG2-c2		5
tumorous blood cells mbn2		9
ovary fGS/OSS		9
ovary OSC		7
ovary OSS		6
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		2
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		6
embryonic S1		7
embryonic S3		5
leg disc CME L1		5
wing disc CME-W2		6
wing disc ML-DmD8		7
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		7
wing disc ML-DmD21		3
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		3
antennal disc ML-DmD20-c5		4
mixed discs ML-DmD4-c1		5
CNS ML-DmBG1-c1		10
CNS ML-DmBG2-c2		5
tumorous blood cells mbn2		9
ovary fGS/OSS		9
ovary OSC		7
ovary OSS		6
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		2
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		6
embryonic S1		7
embryonic S3		5
leg disc CME L1		5
wing disc CME-W2		6
wing disc ML-DmD8		7
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		7
wing disc ML-DmD21		3
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		3
antennal disc ML-DmD20-c5		4
mixed discs ML-DmD4-c1		5
CNS ML-DmBG1-c1		10
CNS ML-DmBG2-c2		5
tumorous blood cells mbn2		9
ovary fGS/OSS		9
ovary OSC		7
ovary OSS		6
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		2
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		6
embryonic S1		7
embryonic S3		5
leg disc CME L1		5
wing disc CME-W2		6
wing disc ML-DmD8		7
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		7
wing disc ML-DmD21		3
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		3
antennal disc ML-DmD20-c5		4
mixed discs ML-DmD4-c1		5
CNS ML-DmBG1-c1		10
CNS ML-DmBG2-c2		5
tumorous blood cells mbn2		9
ovary fGS/OSS		9
ovary OSC		7
ovary OSS		6
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		10
Schneider line 2 Sg4		2
embryonic 1182-4H		3
embryonic GM2		7
embryonic Kc167		6
embryonic S1		7
embryonic S3		5
leg disc CME L1		5
wing disc CME-W2		6
wing disc ML-DmD8		7
wing disc ML-DmD9		6
wing disc ML-DmD16-c3		7
wing disc ML-DmD21		3
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		3
antennal disc ML-DmD20-c5		4
mixed discs ML-DmD4-c1		5
CNS ML-DmBG1-c1		10
CNS ML-DmBG2-c2		5
tumorous blood cells mbn2		9
ovary fGS/OSS		9
ovary OSC		7
ovary OSS		6
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		1
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		2
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		3
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		3
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		2
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		1
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		2
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		3
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		3
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		2
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		1
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		2
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		3
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		3
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		2
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		1
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		2
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		3
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		3
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		2
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		1
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		2
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		3
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		3
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		2
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		1
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		2
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		3
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		3
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		2
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		1
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		2
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		3
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		3
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		2
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		2
cold shock, 4-day adult		1
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		2
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		1
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		3
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		3
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		1
Caffeine 1.5 mg/ml 4 hrs, larvae L3		2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		3
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		2
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010, Graveley et al., 2011)

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0035159

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG13896-RA

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

viable, with Scer\GAL4^pnr-MD237

CG13896^GD8160

Phenotype manifest in

Allele

Classical Alleles ( 2 )

For All Classical Alleles Show

Allele of CG13896	Class	Mutagen	Stocks	Known lesion
CG13896^EY03000			1	--
CG13896^G19936		P-element activity	1	--

Alleles Carried on Transgenic Constructs ( 3 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG13896	Mutagen	Stocks	Known lesion
CG13896^GD8160	in vitro construct - RNAi in vitro construct - regulatory fusion	2	Yes
CG13896^KK110574	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG13896^NIG.13896R	in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes

Aneuploid Aberrations

Disrupted in

Df(3L)Exel6085

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD8160}

P{KK110574}

P{NIG.13896R}

Insertions

Type of insertions

Name

Expression data

insertion of mobile activating element

P{EP}CG13896^G19936

P{EPgy2}CG13896^EY03000

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG13896 allele

Gene

References

External Data

Linkouts

BioGRID - A database of protein and genetic interactions

•

63644

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0035159

InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.

•

38089

Orthologs

OrthoDB Orthologs (8) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG61G3QN

Dipteran inclusive ortholog search

EOG63N7NW

Insect inclusive ortholog search

EOG6FTTWT

Arthropod inclusive ortholog search

EOG69ZW5G

Metazoa inclusive ortholog search

EOG6NWBGV

Orthologs in Drosophila Species (EOG61G3QN)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA30127

Drosophila willistoni

Dwil\GK14694

Orthologs in non-Drosophila Dipterans (None identified)

No non-Drosophilid orthologies identified

Orthologs in non-Dipteran Insects (None identified)

No non-Dipteran orthologies identified

Orthologs in non-Insect Arthropods (None identified)

No non-Insect Arthropod orthologies identified

Orthologs in non-Arthropod Metazoa (None identified)

No non-Arthropod Metazoa orthologies identified

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (4) based on analysis using Dmel annotation version 4.3

Organism

Gene

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Stocks & Reagents

Stocks Listed in FlyBase ( 5 )

Bloomington

26974

y¹ w^*; P{EP}CG13896^G19936

15615

y¹ w^67c23; P{EPgy2}CG13896^EY03000

VDRC

v102063

P{KK110574}VIE-260B

v17735

w¹¹¹⁸; P{GD8160}v17735

v17733

w¹¹¹⁸; P{GD8160}v17733/TM3

Genomic Clones ( 2 )

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 12 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

IP07664

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0035159

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

38089

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

RefSeq (Proteins)

•

DDBJ / EMBL / GenBank

•

Entrez Gene - A searchable database of RefSeq genes.

•

38089

UniProtKB/TrEMBL

•

Q9W0N2

Other Crossreferences

Linkouts

BioGRID - A database of protein and genetic interactions

•

63644

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0035159

DRSC - Results from RNAi screens.

•

FBgn0035159

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0035159

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG13896-RA

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0035159

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

38089

InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.

•

38089

modMine - Data generated by the modENCODE project.

•

FBgn0035159

Synonyms & Secondary IDs ( 1 )

Reported As

Symbol Synonym

CG13896

(Keleman et al., 2009.8.5, Japanese National Institute of Genetics, 2012.5.21)

Name Synonym

Secondary FlyBase IDs

References ( 16 )

Research paper

Rouault et al., 2010, Proc. Natl. Acad. Sci. U.S.A. 107(33): 14615--14620: Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny. [FBrf0211646]

Supplementary material

Graveley et al., 2011, Nature 471(7339):: Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980]
The modENCODE Consortium, 2010, Science 330(6012):: DataS14: Gene co-expression clusters. [FBrf0213979]
Mummery-Widmer et al., 2009, Nature 458(7241):: Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Giot et al., 2003, Science 302(5651):: Tables S1 to S7. [FBrf0166452]

Personal communication to FlyBase

Halfon, 2012.6.19, REDfly CRMs and TFBS as mapped FlyBase features.: REDfly CRMs and TFBS as mapped FlyBase features. [FBrf0218775]
Bellen, 2009.2.6, BDGP_2009_0206.GenExel.xml: BDGP_2009_0206.GenExel.xml [FBrf0206623]
Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]
Gene Disruption Project members, 2001-, (Computer file): (Computer file) [FBrf0132177]

FlyBase analysis

FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations.: Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
FlyBase, 1992-, FlyBase curation.: FlyBase curation. [FBrf0105495]

Stock list

Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY.: RNAi stocks available from NIG-FLY. [FBrf0218457]

Curated genome annotation

FamiliarityBreedsContempt, 1999.11, [Automatic annotations performed at the Celera Jamboreee.]: [Automatic annotations performed at the Celera Jamboreee.] [FBrf0126705]