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Gene Dmel\CG13900

General Information
Symbol	Dmel\CG13900	Species	D. melanogaster
Name		Annotation symbol	CG13900
Feature type	protein_coding_gene	FlyBase ID	FBgn0035162
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	61D2-61D2	Sequence location	3L:826,710..833,402 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG13900 (FBgn0035162). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: damaged DNA binding. There is experimental evidence that it is involved in the biological process: mitotic spindle organization; neurogenesis. 4 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Cleavage/polyadenylation specificity factor, A subunit, C-terminal; WD40/YVTN repeat-like-containing domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during early larval stages. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, larval salivary gland, larval trachea, adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, adult spermathecae, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1633394_a_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG13900. Gene sequence location is 3L:826710..833402.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01	Sequence features HFA08370 BKN27513
FB2011_10	References Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 61D2-61D2   Limits computationally determined from genome sequence between P{PZ}l(3)0596705967 and P{PZ}l(3)0264002640
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG13900 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Atypical structure of 3' UTR supported by multiple ESTs. DGC clone GM01240 appears problematic: incomplete CDS
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG13900-RA FBtr0072597  NM_167842   4249   1227 CG13900-RB FBtr0072598  NM_138215   2487   688
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG13900-PA   FBpp0072494   136.6   1227   5.13     NP_728546   AAF47416 CG13900-PB   FBpp0072495   77.0   688   5.53     NP_612059   AAN11452
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Cleavage/polyadenylation specificity factor, A subunit, C-terminal (IPR004871) WD40/YVTN repeat-like-containing domain (IPR015943)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA140639   AA142215   AA201709   AA202834   AA263279   AA264200   AA264766   AA391509   AA391855   AA393017   AA438277   AA438903   AA438929   AA438942   AA440069   AA440524   AA440743   AA441559   AA539127   AA539430   AA539864   AA539866   AA540463   AA567184   AA803680   AA816455   AA816542   AA940851   AA941847   AA942026   AA979571   AA979609   AE014296 AAF47416   AE014296 AAN11452   AI062644   AI063505   AI239117   AI533672   AI544040   AW941125   AX094245   AY069239 AAL39384   BG632103   BG636219   BG637730   BG637912   BG641320   BI161592   BI161593   BI161806   BI170334   BI215774   BI237444   BI240053   BI241273   BI242362   BI352810   BI362237   BI365190   BI371697   BI372463   BI486333   BI571902   BI578628   BI580388   BI592516   BI606974   BI624629   BI625959   BI629157   BI635641   BT021338 AAX33486   BT021424 AAX33572   BT120391   BX042172   CO267224   CO267380   CO273850   CO274774   CO275490   CO291656   CO301212   CO301629   CO309392   CO324994   CO327386   CO327763   CZ484075   CZ484076   EC060625   EC061642   EC062739   EC072948   EC073991   EC200803   EC204746   EC208834   EC217563   EC222008   EC223906   EC235442   EC243915   EC246817   EL878694   ES689370   EV583199   EV584259   GH944976   GH945886   GH946960   GH948287   GH948581   GH953102   GH954272   GH954433   GH954881   GH955763   GH957379   GH957554   GH958435   GH960349   GH960451   GH960493   GH963069   GH964028   GH964884   GH964954   GH965213   GH966139   GH966368   GH966635   GH966752   GH966756   GH966776   GH967620   GH968470   GH968649   GH968683   GH970834   GH971405   GH972977   GH973724   GH974280   GH975251   GH977829   GH977869   GH979504   GH979592   GH980355   GH984560   GH984565
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q5BI86 Q8T9L6 Q9W0M7
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0035162    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0035162 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during early larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0035162 expression level Developmental Stage   Expression Level embryo 00-02hr    8583 embryo 02-04hr    18213 embryo 04-06hr    23004 embryo 06-08hr    17103 embryo 08-10hr    16605 embryo 10-12hr    13997 embryo 12-14hr    12081 embryo 14-16hr    10404 embryo 16-18hr    6621 embryo 18-20hr    4418 embryo 20-22hr    10071 embryo 22-24hr    8763 larva L1    14307 larva L2    7497 larva L3 12hr old    5404 larva L3 puffstage 1-2    2684 larva L3 puffstage 3-6    3712 larva L3 puffstage 7-9    4468 white prepupae new    4650 white prepupae 12hr    4330 white prepupae 24hr    5110 pupae 2d postWPP    3176 pupae 3d postWPP    1567 pupae 4d postWPP    2154 adult male 01day    1420 adult male 05day    1454 adult male 30day    1835 adult female 01day    7846 adult female 05day    8559 adult female 30day    7928 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (8583) embryo 02-04hr  (18213) embryo 04-06hr  (23004) embryo 06-08hr  (17103) embryo 08-10hr  (16605) embryo 10-12hr  (13997) embryo 12-14hr  (12081) embryo 14-16hr  (10404) embryo 16-18hr  (6621) embryo 18-20hr  (4418) embryo 20-22hr  (10071) embryo 22-24hr  (8763) larva L1  (14307) larva L2  (7497) larva L3 12hr old  (5404) larva L3 puffstage 1-2  (2684) larva L3 puffstage 3-6  (3712) larva L3 puffstage 7-9  (4468) white prepupae new  (4650) white prepupae 12hr  (4330) white prepupae 24hr  (5110) pupae 2d postWPP  (3176) pupae 3d postWPP  (1567) pupae 4d postWPP  (2154) adult male 01day  (1420) adult male 05day  (1454) adult male 30day  (1835) adult female 01day  (7846) adult female 05day  (8559) adult female 30day  (7928) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (8583) embryo 02-04hr  (18213) embryo 04-06hr  (23004) embryo 06-08hr  (17103) embryo 08-10hr  (16605) embryo 10-12hr  (13997) embryo 12-14hr  (12081) embryo 14-16hr  (10404) embryo 16-18hr  (6621) embryo 18-20hr  (4418) embryo 20-22hr  (10071) embryo 22-24hr  (8763) larva L1  (14307) larva L2  (7497) larva L3 12hr old  (5404) larva L3 puffstage 1-2  (2684) larva L3 puffstage 3-6  (3712) larva L3 puffstage 7-9  (4468) white prepupae new  (4650) white prepupae 12hr  (4330) white prepupae 24hr  (5110) pupae 2d postWPP  (3176) pupae 3d postWPP  (1567) pupae 4d postWPP  (2154) adult male 01day  1420 adult male 05day  1454 adult male 30day  (1835) adult female 01day  (7846) adult female 05day  (8559) adult female 30day  (7928) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    8583 embryo 02-04hr  (18213) embryo 04-06hr  (23004) embryo 06-08hr  (17103) embryo 08-10hr  (16605) embryo 10-12hr  (13997) embryo 12-14hr  (12081) embryo 14-16hr  10404 embryo 16-18hr    6621 embryo 18-20hr    4418 embryo 20-22hr  10071 embryo 22-24hr    8763 larva L1  (14307) larva L2    7497 larva L3 12hr old    5404 larva L3 puffstage 1-2    2684 larva L3 puffstage 3-6    3712 larva L3 puffstage 7-9    4468 white prepupae new    4650 white prepupae 12hr    4330 white prepupae 24hr    5110 pupae 2d postWPP    3176 pupae 3d postWPP    1567 pupae 4d postWPP    2154 adult male 01day    1420 adult male 05day    1454 adult male 30day    1835 adult female 01day    7846 adult female 05day    8559 adult female 30day    7928 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    8583 embryo 02-04hr    18213 embryo 04-06hr    23004 embryo 06-08hr    17103 embryo 08-10hr    16605 embryo 10-12hr    13997 embryo 12-14hr    12081 embryo 14-16hr    10404 embryo 16-18hr    6621 embryo 18-20hr    4418 embryo 20-22hr    10071 embryo 22-24hr    8763 larva L1    14307 larva L2    7497 larva L3 12hr old    5404 larva L3 puffstage 1-2    2684 larva L3 puffstage 3-6    3712 larva L3 puffstage 7-9    4468 white prepupae new    4650 white prepupae 12hr    4330 white prepupae 24hr    5110 pupae 2d postWPP    3176 pupae 3d postWPP    1567 pupae 4d postWPP    2154 adult male 01day    1420 adult male 05day    1454 adult male 30day    1835 adult female 01day    7846 adult female 05day    8559 adult female 30day    7928 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0035162 expression level Developmental Stage   Expression Level embryo 00-02hr    8583 embryo 02-04hr    18213 embryo 04-06hr    23004 embryo 06-08hr    17103 embryo 08-10hr    16605 embryo 10-12hr    13997 embryo 12-14hr    12081 embryo 14-16hr    10404 embryo 16-18hr    6621 embryo 18-20hr    4418 embryo 20-22hr    10071 embryo 22-24hr    8763 larva L1    14307 larva L2    7497 larva L3 12hr old    5404 larva L3 puffstage 1-2    2684 larva L3 puffstage 3-6    3712 larva L3 puffstage 7-9    4468 white prepupae new    4650 white prepupae 12hr    4330 white prepupae 24hr    5110 pupae 2d postWPP    3176 pupae 3d postWPP    1567 pupae 4d postWPP    2154 adult male 01day    1420 adult male 05day    1454 adult male 30day    1835 adult female 01day    7846 adult female 05day    8559 adult female 30day    7928 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (8583) embryo 02-04hr  (18213) embryo 04-06hr  (23004) embryo 06-08hr  (17103) embryo 08-10hr  (16605) embryo 10-12hr  (13997) embryo 12-14hr  (12081) embryo 14-16hr  (10404) embryo 16-18hr  (6621) embryo 18-20hr  (4418) embryo 20-22hr  (10071) embryo 22-24hr  (8763) larva L1  (14307) larva L2  (7497) larva L3 12hr old  (5404) larva L3 puffstage 1-2  (2684) larva L3 puffstage 3-6  (3712) larva L3 puffstage 7-9  (4468) white prepupae new  (4650) white prepupae 12hr  (4330) white prepupae 24hr  (5110) pupae 2d postWPP  (3176) pupae 3d postWPP  (1567) pupae 4d postWPP  (2154) adult male 01day  (1420) adult male 05day  (1454) adult male 30day  (1835) adult female 01day  (7846) adult female 05day  (8559) adult female 30day  (7928) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (8583) embryo 02-04hr  (18213) embryo 04-06hr  (23004) embryo 06-08hr  (17103) embryo 08-10hr  (16605) embryo 10-12hr  (13997) embryo 12-14hr  (12081) embryo 14-16hr  (10404) embryo 16-18hr  (6621) embryo 18-20hr  (4418) embryo 20-22hr  (10071) embryo 22-24hr  (8763) larva L1  (14307) larva L2  (7497) larva L3 12hr old  (5404) larva L3 puffstage 1-2  (2684) larva L3 puffstage 3-6  (3712) larva L3 puffstage 7-9  (4468) white prepupae new  (4650) white prepupae 12hr  (4330) white prepupae 24hr  (5110) pupae 2d postWPP  (3176) pupae 3d postWPP  1567 pupae 4d postWPP  2154 adult male 01day  1420 adult male 05day  1454 adult male 30day  1835 adult female 01day  (7846) adult female 05day  (8559) adult female 30day  (7928) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    8583 embryo 02-04hr  18213 embryo 04-06hr  (23004) embryo 06-08hr  17103 embryo 08-10hr  16605 embryo 10-12hr  13997 embryo 12-14hr  12081 embryo 14-16hr  10404 embryo 16-18hr    6621 embryo 18-20hr    4418 embryo 20-22hr  10071 embryo 22-24hr    8763 larva L1  14307 larva L2    7497 larva L3 12hr old    5404 larva L3 puffstage 1-2    2684 larva L3 puffstage 3-6    3712 larva L3 puffstage 7-9    4468 white prepupae new    4650 white prepupae 12hr    4330 white prepupae 24hr    5110 pupae 2d postWPP    3176 pupae 3d postWPP    1567 pupae 4d postWPP    2154 adult male 01day    1420 adult male 05day    1454 adult male 30day    1835 adult female 01day    7846 adult female 05day    8559 adult female 30day    7928 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    8583 embryo 02-04hr    18213 embryo 04-06hr    23004 embryo 06-08hr    17103 embryo 08-10hr    16605 embryo 10-12hr    13997 embryo 12-14hr    12081 embryo 14-16hr    10404 embryo 16-18hr    6621 embryo 18-20hr    4418 embryo 20-22hr    10071 embryo 22-24hr    8763 larva L1    14307 larva L2    7497 larva L3 12hr old    5404 larva L3 puffstage 1-2    2684 larva L3 puffstage 3-6    3712 larva L3 puffstage 7-9    4468 white prepupae new    4650 white prepupae 12hr    4330 white prepupae 24hr    5110 pupae 2d postWPP    3176 pupae 3d postWPP    1567 pupae 4d postWPP    2154 adult male 01day    1420 adult male 05day    1454 adult male 30day    1835 adult female 01day    7846 adult female 05day    8559 adult female 30day    7928 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0035162    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0035162 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, larval salivary gland, larval trachea, adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, adult spermathecae, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0035162 expression level Tissue   Expression Level Larval Central Nervous System    719.425 Larval Midgut    203.9 Larval Hindgut    352.1 Larval Malpighian Tubules    96.2 Larval Fat Body    101.3 Larval Salivary Gland    559.9 Larval Trachea    540.725 Larval Carcass    426.75 Adult Head    137.7 Adult Eye    83.875 Adult Brain    157.7 Adult Thoracic-Abdominal Ganglion    119.4 Adult Crop    199.1 Adult Midgut    204.2 Adult Hindgut    143.4 Adult Malpighian Tubules    219.7 Adult Fat Body    188.6 Adult Salivary Gland    272 Adult Heart    118.9 Adult VirginFemale Spermatheca    225.4 Adult InseminatedFemale Spermatheca    353.2 Adult Ovary    601.4 Adult Testis    57.5 Adult Male Accessory Gland    272.3 Adult Carcass    133.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (719.425) Larval Midgut    203.9 Larval Hindgut    352.1 Larval Malpighian Tubules    96.2 Larval Fat Body    101.3 Larval Salivary Gland  (559.9) Larval Trachea  (540.725) Larval Carcass    426.75 Adult Head    137.7 Adult Eye    83.875 Adult Brain    157.7 Adult Thoracic-Abdominal Ganglion    119.4 Adult Crop    199.1 Adult Midgut    204.2 Adult Hindgut    143.4 Adult Malpighian Tubules    219.7 Adult Fat Body    188.6 Adult Salivary Gland    272 Adult Heart    118.9 Adult VirginFemale Spermatheca    225.4 Adult InseminatedFemale Spermatheca    353.2 Adult Ovary  (601.4) Adult Testis    57.5 Adult Male Accessory Gland    272.3 Adult Carcass    133.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    719.425 Larval Midgut    203.9 Larval Hindgut    352.1 Larval Malpighian Tubules    96.2 Larval Fat Body    101.3 Larval Salivary Gland    559.9 Larval Trachea    540.725 Larval Carcass    426.75 Adult Head    137.7 Adult Eye    83.875 Adult Brain    157.7 Adult Thoracic-Abdominal Ganglion    119.4 Adult Crop    199.1 Adult Midgut    204.2 Adult Hindgut    143.4 Adult Malpighian Tubules    219.7 Adult Fat Body    188.6 Adult Salivary Gland    272 Adult Heart    118.9 Adult VirginFemale Spermatheca    225.4 Adult InseminatedFemale Spermatheca    353.2 Adult Ovary    601.4 Adult Testis    57.5 Adult Male Accessory Gland    272.3 Adult Carcass    133.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    719.425 Larval Midgut    203.9 Larval Hindgut    352.1 Larval Malpighian Tubules    96.2 Larval Fat Body    101.3 Larval Salivary Gland    559.9 Larval Trachea    540.725 Larval Carcass    426.75 Adult Head    137.7 Adult Eye    83.875 Adult Brain    157.7 Adult Thoracic-Abdominal Ganglion    119.4 Adult Crop    199.1 Adult Midgut    204.2 Adult Hindgut    143.4 Adult Malpighian Tubules    219.7 Adult Fat Body    188.6 Adult Salivary Gland    272 Adult Heart    118.9 Adult VirginFemale Spermatheca    225.4 Adult InseminatedFemale Spermatheca    353.2 Adult Ovary    601.4 Adult Testis    57.5 Adult Male Accessory Gland    272.3 Adult Carcass    133.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0035162 expression level Tissue   Expression Level Larval Central Nervous System    719.425 Larval Midgut    203.9 Larval Hindgut    352.1 Larval Malpighian Tubules    96.2 Larval Fat Body    101.3 Larval Salivary Gland    559.9 Larval Trachea    540.725 Larval Carcass    426.75 Adult Head    137.7 Adult Eye    83.875 Adult Brain    157.7 Adult Thoracic-Abdominal Ganglion    119.4 Adult Crop    199.1 Adult Midgut    204.2 Adult Hindgut    143.4 Adult Malpighian Tubules    219.7 Adult Fat Body    188.6 Adult Salivary Gland    272 Adult Heart    118.9 Adult VirginFemale Spermatheca    225.4 Adult InseminatedFemale Spermatheca    353.2 Adult Ovary    601.4 Adult Testis    57.5 Adult Male Accessory Gland    272.3 Adult Carcass    133.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  719.425 Larval Midgut    203.9 Larval Hindgut    352.1 Larval Malpighian Tubules    96.2 Larval Fat Body    101.3 Larval Salivary Gland  559.9 Larval Trachea  540.725 Larval Carcass    426.75 Adult Head    137.7 Adult Eye    83.875 Adult Brain    157.7 Adult Thoracic-Abdominal Ganglion    119.4 Adult Crop    199.1 Adult Midgut    204.2 Adult Hindgut    143.4 Adult Malpighian Tubules    219.7 Adult Fat Body    188.6 Adult Salivary Gland    272 Adult Heart    118.9 Adult VirginFemale Spermatheca    225.4 Adult InseminatedFemale Spermatheca    353.2 Adult Ovary  601.4 Adult Testis    57.5 Adult Male Accessory Gland    272.3 Adult Carcass    133.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    719.425 Larval Midgut    203.9 Larval Hindgut    352.1 Larval Malpighian Tubules    96.2 Larval Fat Body    101.3 Larval Salivary Gland    559.9 Larval Trachea    540.725 Larval Carcass    426.75 Adult Head    137.7 Adult Eye    83.875 Adult Brain    157.7 Adult Thoracic-Abdominal Ganglion    119.4 Adult Crop    199.1 Adult Midgut    204.2 Adult Hindgut    143.4 Adult Malpighian Tubules    219.7 Adult Fat Body    188.6 Adult Salivary Gland    272 Adult Heart    118.9 Adult VirginFemale Spermatheca    225.4 Adult InseminatedFemale Spermatheca    353.2 Adult Ovary    601.4 Adult Testis    57.5 Adult Male Accessory Gland    272.3 Adult Carcass    133.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    719.425 Larval Midgut    203.9 Larval Hindgut    352.1 Larval Malpighian Tubules    96.2 Larval Fat Body    101.3 Larval Salivary Gland    559.9 Larval Trachea    540.725 Larval Carcass    426.75 Adult Head    137.7 Adult Eye    83.875 Adult Brain    157.7 Adult Thoracic-Abdominal Ganglion    119.4 Adult Crop    199.1 Adult Midgut    204.2 Adult Hindgut    143.4 Adult Malpighian Tubules    219.7 Adult Fat Body    188.6 Adult Salivary Gland    272 Adult Heart    118.9 Adult VirginFemale Spermatheca    225.4 Adult InseminatedFemale Spermatheca    353.2 Adult Ovary    601.4 Adult Testis    57.5 Adult Male Accessory Gland    272.3 Adult Carcass    133.7 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    137.7   NA  Eye    83.875   NA  Brain    157.7   719.425  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    119.4   NA  Crop    199.1   203.9  Midgut    204.2   352.1  Hindgut    143.4   96.2  Malpighian Tubules    219.7   101.3  Fat Body    188.6   559.9  Salivary Gland    272   NA  Heart    118.9   540.725  Trachea    NA   NA  VirginFemale Spermatheca    225.4   NA  InseminatedFemale Spermatheca    353.2   NA  Ovary    601.4   NA  Testis    57.5   NA  Male Accessory Gland    272.3   426.75  Carcass    133.7 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_08
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035162 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13900-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG13900 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL41407 CG13900GD4919 semi-lethal | pupal stage, with Scer\GAL4pnr-MD237 CG13900GD4919 Other Phenotypes Allele neuroanatomy defective | larval stage, with Scer\GAL41407 CG13900GD4919 visible, with Scer\GAL4pnr-MD237 CG13900GD4919 Phenotype manifest in Allele embryonic/larval neuroblast | larval stage, with Scer\GAL41407 CG13900GD4919 ganglion mother cell | larval stage, with Scer\GAL41407 CG13900GD4919 mesothoracic tergum, with Scer\GAL4pnr-MD237 CG13900GD4919
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG13900 Class Mutagen Stocks Known lesion CG13900f01609 piggyBac transposase 1 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG13900 Class Mutagen Stocks Known lesion CG13900GD4919 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG13900HMS00614 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG13900KK107513 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel6086 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4919} NA P{KK107513} NA P{TRiP.HMS00614} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{WH}CG13900f01609 NA
Gene Ontology: Function, Process & Cellular Component ( 8 unique terms )
Terms Based on Experimental Evidence ( 4 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
mitotic spindle organization inferred from mutant phenotype (Goshima et al., 2007) neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component
CV term Evidence References
catalytic step 2 spliceosome inferred from direct assay (Herold et al., 2009) precatalytic spliceosome inferred from direct assay (Herold et al., 2009)
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
damaged DNA binding inferred from sequence or structural similarity with EMBL:AF159853 (FlyBase, 1992-)
Biological Process
CV term Evidence References
nuclear mRNA splicing, via spliceosome inferred by curator from GO:0071011|GO:0071013 (Herold et al., 2009) inferred from sequence or structural similarity with Saccharomyces RSE1 AND inferred from sequence or structural similarity with NCBI:CAB56791 (Mount and Salz, 2000)
Cellular Component
CV term Evidence References
small nuclear ribonucleoprotein complex inferred from sequence or structural similarity with Saccharomyces RSE1 AND inferred from sequence or structural similarity with NCBI:CAB56791 (Mount and Salz, 2000) U2 snRNP inferred from sequence or structural similarity with Saccharomyces RSE1 AND inferred from sequence or structural similarity with NCBI:CAB56791 (Mount and Salz, 2000)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG13900 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 63648 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0035162 DroID - A comprehensive database of gene and protein interactions. • FBgn0035162 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38093
Orthologs
Genome-wide drosophilid orthologs	Dana\GF24063 Dere\GG14635 Dgri\GH16029 Dmoj\GI12293 Dper\GL20829 Dpse\GA12611 Dsec\GM14250 Dsim\GD13507 Dvir\GJ13230 Dwil\GK16677 Dyak\GE20993
Curated drosophilid orthologs	Dmir\CG13900 (Thornton, 2005.12.20) Dpse\GA12611
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL002709-PA Aedes aegypti (mosquito) AGAP005549-PA Anopheles gambiae (mosquito) XP_623333.1 Apis mellifera (honey bee) At3g55200.1 Arabidopsis thaliana (wall cress) At3g55220.1 Arabidopsis thaliana (wall cress) 29900 Batrachochytrium dendrobatidis (chytrid fungus) 264333 Branchiostoma floridae (lancelet) XP_001895346.1 Brugia malayi (roundworm nematode) BGIBMGA000829-PA Bombyx mori (silk worm) ENSBTAP00000014050 Bos taurus (bovine) CAL0004426 Candida albicans (a form of yeast) CN29389 Caenorhabditis brenneri (small nematode) CBP03137 Caenorhabditis briggsae (nematode) CE17155 Caenorhabditis elegans (worm) ENSCAFP00000029880 Canis familiaris (dog) CAGL0L01507g Candida glabrata (haploid yeast) Chro.80487 Cryptosporidium hominis (obligate parasite) ENSCINP00000002609 Ciona intestinalis (sea squirt) JA10728 Caenorhabditis japonica (nematode) CML103C Cyanidioschyzon merolae (red alga) cn01434 Cryptococcus neoformans (yeast-like fungus) cgd8_4240 Cryptosporidium parvum (protozoan parasite) CPIJ007014 Culex pipens (mosquito) ENSCPOP00000000515 Cavia porcellus (guinea pig) 194382 Chlamidomonas reinhardtii (green alga) RP44236 Caenorhabditis remanei (nematode) ENSCSAVP00000019533 Ciona savignyi (sedentary tunicate) 155561 Capitella spl (polychaete worm) DDB0233171 Dictyostelium discoideum (amoeba) DEHA2A08932g Debaryomyces Hansenii (yeast) 303178 Daphnia pulex (daphnia) ENSDARP00000018100 Danio rerio (zebra fish) ENSECAP00000011754 Equus caballus (horse) XP_652013 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000003465 Gymnopilus aculeatus (mushroom) ENSGALP00000003978 Gallus gallus (chicken) 100012 Hypsipyla robusta (cedar shoot borer) ENSP00000305790 Homo sapiens (human) ISCW020447-PA Ixodes scapularis (deer tick) KLLA0A08129g Kluyveromyces lactis (yeast) 188836 Lottia gigantea (owl limpet) LmjF05.0890 Leishmania major (virus) 36939 Monocosta brevicollis (choanoflagellate) ENSMODP00000028143 Monodelphis domestica (gray opossum) ENSMMUP00000023419 Macaca mulatta (rhesus monkey) ENSMUSP00000045073 Mus musculus (house mouse) 238290 Nematostella vectensis (starlet anemone) ENSOANP00000001849 Ornithorynchus anatinus (platypus) ENSORLP00000016900 Oryzias latipes (japanese killifish) LOC_Os02g04480.1 Oryza sativa (asian rice) 33381 Ostreococcus tauri (green alga) PFL1680w Plasmodium falciparum (protozoal parasite) PHUM001660-PA Pediculus humanus (human body louse) 227044 Physcomitrella patens (moss) ENSPPYP00000008511 Pongo pygmaeus (orangutan) 71896 Phytophthora ramorum (sudden oak death pathogen) 109120 Phytophthora sojae (root rot pathogen) 803217 Populus trichocarpa (black cottonwood) 805547 Populus trichocarpa (black cottonwood) ENSPTRP00000014195 Pan troglodytes (chimpanzee) PVX_100690 Plasmodium vivax (protozoal parasite) ENSRNOP00000023854 Rattus norvegicus (norway rat) 5054645 Sorghum bicolor (sorghum) YML049C Saccharomyces cerevisiae (budding yeast) Smp_137430 Schistosoma mansoni (trematode parasite) SPAPJ698.03c Schizosaccharomyces pombe (fission yeast) XP_001188711.1 Strongylocentrotus purpuratus (purple sea urchin) 49802 Trichoplax adhaerens (metazoa) TA07140 Theileria annulata (apicomplexan parasite) XP_972649.1 Tribolium castaneum (red flour beetle) Tc00.1047053506789.230 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053508387.70 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000007517 Tetraodon nigroviridis (green spotted pufferfish) TP04_0182 Theileria parva (parasitic protozoan) 35239 Thalassiosira pseudonana (marine diatom) ENSTRUP00000039941 Takifugu rubripes (pufferfish Takifugu) 3684.m00083 Tetrahymena thermophila (ciliate protozoa) 80671.m00471 Trichomonas vaginalis (parasitic flagellated protozoan) YALI0D02717g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB17718 LH19527 ISCW020447 FBgn0238276 FBgn0218679 FBgn0200456 FBgn0185218 FBgn0169176 JGI_V11_303178 FBgn0072657 FBgn0158424 FBgn0135050 FBgn0123500 FBgn0106891 FBgn0101057 CPIJ007014 BGIBMGA000829 GB11574 AGAP005549 AAEL015441 AAEL002709 PHUM449060 GLEAN_10322
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	33731 y1 sc* v1; P{TRiP.HMS00614}attP2/TM3, Sb1
Harvard	- PBac{WH}CG13900f01609
VDRC	v108248 P{KK107513}VIE-260B v18955 w1118; P{GD4919}v18955
Genomic Clones ( 1 )
	BACR26C18 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 133 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM01240 RE01065
Other clones	DPiM_GM01240 FI04459
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH01929 GM01622 GM13946 GM20890 LD02042 LD03158 LD03683 LD04914 LD06370 LD07814 LD10537 LD10794 LD12201 LD12216 LD13288 LD13328 LD13342 LD15150 LD15616 LD16537 LD17214 LD17552 LD19144 LD19146 LD19960 LD23126 LD26031 LD27156 LD34194 LD34290 LD46061 RE11741 RE22377 RE33671 RE36696 RE38304 RE39667 RE46748 RE50429 RE58641 RE59431 RE69753 RE72519 RE74574 RH07217 RH10226 RH57977 RH64221 RH66473 RH73943 SD05572 SD12640 SD13833 SD17051
Other clones	11923 13331 34267 37285 54934 57895 65629 67107 67857 70219 181688 CK00001 CK01.14A.F7 Dmel_dig_003919_0680_3609 Dmel_dig_005380_0617_1316 EK112444 EK115431 EK117723 EK149139 EK149858 EK180434 EK181743 EK195342 EK197918 EK217508 EP06902 EP08004 GH03366 IP08542 LD08481 RE01304 RP004033780 RP004056266 RP004060328 RP004092406 RP004107412 RP004114691 RP004116850 RP004135162 RP004196817 RP004197097 RP004197284 RP004197733 RP004214504 RP004224084 RP004234334 RP004242321 RP004248902 RP004249675 RP004275371 RP004277239 RP004347375 RP004366798 RP004377038 RP004389106 RP004413116 RP004421310 RP004451492 RP004453017 RP004454431 RP004464793 RP004475357 RP004475387 RP004476670 RP004477955 RP004480453 RP004482693 RP004496390 RP004497388 RP004498089 RP004508363 RP004518466 RP004544627 RP004544697 RP004546320
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0035162 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38093
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	The "l(3)0083500835" allele fails to complement alleles of the "l(3)61Db-S" and "l(3)61Dc" loci to varying extents. This suggests that the "l(3)61Db-S" and "l(3)61Dc" loci may be physically close to each other so that the single P-element insertion that causes "l(3)0083500835" (P{PZ}l(3)0083500835) may impair the function of both genes. From the position of the P{PZ}l(3)0083500835 insertion, it is likely that "l(3)61Db-S" and "l(3)61Dc" correspond to "CG13900" and "CG13886", although a one-to-one assignment cannot be established. (Saito et al., 2002)
Other Comments
	Nonsense-mediated mRNA decay (NMD) down-regulates a distinct splice isoform(s) of this gene. (Hansen et al., 2009) RNAi screen using dsRNA made from templates generated with primers directed against this gene results in a long metaphase spindle with misaligned chromosomes when assayed in S2 cells. This phenotype can be observed when the screen is performed with or without Cdc27 dsRNA. (Goshima et al., 2007) Area matching Drosophila EST AA567184. (Davies, 2001.3.15)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_138215 NM_167842 RefSeq (Proteins) • NP_612059 NP_728546 DDBJ / EMBL / GenBank • AA567184 AA816455 AAF47416 AAL39384 AAN11452 AAX33486 AAX33572 AW941125 AX094245 AY069239 BG637730 BI161592 BI161593 BT021338 BT021424 CZ484075 CZ484076 Entrez Gene - A searchable database of RefSeq genes. • 38093 UniProtKB/TrEMBL • Q5BI86 Q8T9L6 Q9W0M7
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Cleavage/polyadenylation specificity factor, A subunit, C-terminal (IPR004871) WD40/YVTN repeat-like-containing domain (IPR015943)
Linkouts
	BioGRID - A database of protein and genetic interactions • 63648 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0035162 DroID - A comprehensive database of gene and protein interactions. • FBgn0035162 DRSC - Results from RNAi screens. • FBgn0035162 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035162 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13900-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0035162 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38093 InParanoid A subset of ortholog calls from InParanoid. • AAEL002709-PA Aedes aegypti (mosquito) AGAP005549-PA Anopheles gambiae (mosquito) XP_623333.1 Apis mellifera (honey bee) At3g55200.1 Arabidopsis thaliana (wall cress) At3g55220.1 Arabidopsis thaliana (wall cress) 29900 Batrachochytrium dendrobatidis (chytrid fungus) 264333 Branchiostoma floridae (lancelet) XP_001895346.1 Brugia malayi (roundworm nematode) BGIBMGA000829-PA Bombyx mori (silk worm) ENSBTAP00000014050 Bos taurus (bovine) CAL0004426 Candida albicans (a form of yeast) CN29389 Caenorhabditis brenneri (small nematode) CBP03137 Caenorhabditis briggsae (nematode) CE17155 Caenorhabditis elegans (worm) ENSCAFP00000029880 Canis familiaris (dog) CAGL0L01507g Candida glabrata (haploid yeast) Chro.80487 Cryptosporidium hominis (obligate parasite) ENSCINP00000002609 Ciona intestinalis (sea squirt) JA10728 Caenorhabditis japonica (nematode) CML103C Cyanidioschyzon merolae (red alga) cn01434 Cryptococcus neoformans (yeast-like fungus) cgd8_4240 Cryptosporidium parvum (protozoan parasite) CPIJ007014 Culex pipens (mosquito) ENSCPOP00000000515 Cavia porcellus (guinea pig) 194382 Chlamidomonas reinhardtii (green alga) RP44236 Caenorhabditis remanei (nematode) ENSCSAVP00000019533 Ciona savignyi (sedentary tunicate) 155561 Capitella spl (polychaete worm) DDB0233171 Dictyostelium discoideum (amoeba) DEHA2A08932g Debaryomyces Hansenii (yeast) 303178 Daphnia pulex (daphnia) ENSDARP00000018100 Danio rerio (zebra fish) ENSECAP00000011754 Equus caballus (horse) XP_652013 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000003465 Gymnopilus aculeatus (mushroom) ENSGALP00000003978 Gallus gallus (chicken) 100012 Hypsipyla robusta (cedar shoot borer) ENSP00000305790 Homo sapiens (human) ISCW020447-PA Ixodes scapularis (deer tick) KLLA0A08129g Kluyveromyces lactis (yeast) 188836 Lottia gigantea (owl limpet) LmjF05.0890 Leishmania major (virus) 36939 Monocosta brevicollis (choanoflagellate) ENSMODP00000028143 Monodelphis domestica (gray opossum) ENSMMUP00000023419 Macaca mulatta (rhesus monkey) ENSMUSP00000045073 Mus musculus (house mouse) 238290 Nematostella vectensis (starlet anemone) ENSOANP00000001849 Ornithorynchus anatinus (platypus) ENSORLP00000016900 Oryzias latipes (japanese killifish) LOC_Os02g04480.1 Oryza sativa (asian rice) 33381 Ostreococcus tauri (green alga) PFL1680w Plasmodium falciparum (protozoal parasite) PHUM001660-PA Pediculus humanus (human body louse) 227044 Physcomitrella patens (moss) ENSPPYP00000008511 Pongo pygmaeus (orangutan) 71896 Phytophthora ramorum (sudden oak death pathogen) 109120 Phytophthora sojae (root rot pathogen) 803217 Populus trichocarpa (black cottonwood) 805547 Populus trichocarpa (black cottonwood) ENSPTRP00000014195 Pan troglodytes (chimpanzee) PVX_100690 Plasmodium vivax (protozoal parasite) ENSRNOP00000023854 Rattus norvegicus (norway rat) 5054645 Sorghum bicolor (sorghum) YML049C Saccharomyces cerevisiae (budding yeast) Smp_137430 Schistosoma mansoni (trematode parasite) SPAPJ698.03c Schizosaccharomyces pombe (fission yeast) XP_001188711.1 Strongylocentrotus purpuratus (purple sea urchin) 49802 Trichoplax adhaerens (metazoa) TA07140 Theileria annulata (apicomplexan parasite) XP_972649.1 Tribolium castaneum (red flour beetle) Tc00.1047053506789.230 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053508387.70 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000007517 Tetraodon nigroviridis (green spotted pufferfish) TP04_0182 Theileria parva (parasitic protozoan) 35239 Thalassiosira pseudonana (marine diatom) ENSTRUP00000039941 Takifugu rubripes (pufferfish Takifugu) 3684.m00083 Tetrahymena thermophila (ciliate protozoa) 80671.m00471 Trichomonas vaginalis (parasitic flagellated protozoan) YALI0D02717g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38093 modMine - Data generated by the modENCODE project. • FBgn0035162 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB17718 LH19527 ISCW020447 FBgn0238276 FBgn0218679 FBgn0200456 FBgn0185218 FBgn0169176 JGI_V11_303178 FBgn0072657 FBgn0158424 FBgn0135050 FBgn0123500 FBgn0106891 FBgn0101057 CPIJ007014 BGIBMGA000829 GB11574 AGAP005549 AAEL015441 AAEL002709 PHUM449060 GLEAN_10322
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	CG13900 (Huang et al., 2005, Stuart et al., 2007, Saito et al., 2002, Goshima et al., 2007, Peifer, 2009.3.6, Hansen et al., 2009, Keleman et al., 2009.8.5, Rehwinkel et al., 2005, Accardo et al., 2004, Herold et al., 2009, Fernández-Ayala et al., 2010, Zhou et al., 2008, Ni et al., 2010.12.1, Saulière et al., 2010, Neumüller et al., 2011) SF3B3 (Peifer, 2009.3.6)
Name Synonym	putative damaged DNA-binding activity (Accardo et al., 2004) splicing factor 3b subunit 3 (Peifer, 2009.3.6)
Secondary FlyBase IDs
References ( 34 )
Generate a list of	All references relating to this gene ( 34 )
List References by type	Research paper  ( 14 ) Supplementary material  ( 5 ) Personal communication to FlyBase  ( 5 ) FlyBase analysis  ( 1 ) Patent  ( 1 ) DNA/RNA sequence record  ( 2 ) Computer file  ( 3 ) Automatic genome annotation  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 4 )
	Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593 Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi. [FBrf0213621] Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812] Fernández-Ayala et al., 2010, PLoS ONE 5(1): e8549 Gene expression in a Drosophila model of mitochondrial disease. [FBrf0209705] Saulière et al., 2010, Nat. Struct. Mol. Biol. 17(10): 1269--1271 The exon junction complex differentially marks spliced junctions. [FBrf0212018] Show all research papers ...