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Gene Dmel\CG13907

General Information
Symbol	Dmel\CG13907	Species	D. melanogaster
Name		Annotation symbol	CG13907
Feature type	protein_coding_gene	FlyBase ID	FBgn0035173
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	61D2-61D3	Sequence location	3L:877,281..881,873 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG13907 (FBgn0035173). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: secondary active monocarboxylate transmembrane transporter activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: transmembrane transport. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Major facilitator superfamily; Major facilitator superfamily domain, general substrate transporter. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult hindgut. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval hindgut, adult Malpighian tubules, adult heart, adult salivary gland, adult ovary, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1630968_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG13907. Gene sequence location is 3L:877281..881873.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN30059 BKN45509 HFA08377
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 61D2-61D3   Limits computationally determined from genome sequence between P{PZ}l(3)0596705967 and P{PZ}l(3)0264002640
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG13907 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG13907-RA FBtr0072593  NM_138225   4593   816
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG13907-PA   FBpp0072490   88.0   816   5.03     NP_612069   AAF47427
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Major facilitator superfamily (IPR011701) Major facilitator superfamily domain, general substrate transporter (IPR016196)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA141860   AA540586   AA698301   AA698311   AE014296 AAF47427   AI107904   AI135039   AI258441   AI295095   AI402926   AI512998   AI533565   AW940854   AY089513 AAL90251   BF487069   BF497470   BG635211   BI162816   BI215164   BI215565   BI215816   BI215884   BI216122   BI216742   BI227550   BI227605   BI227638   BI228994   BI230522   BI230710   BI231229   BI232789   BI234587   BI237404   BI356848   BI366968   BI371541   BI375400   BI486528   BI577204   BI578180   BI636110   BI640519   BI641399   BP544990   CA805798   CA805820   CA806703   CK657240   CO177540   CO178953   CO179447   CO187558   CO262640   CO266174   CO277513   CO288190   CO290909   CO293082   CO294037   CO303373   CO305223   CO323115   CO330202   CO333384   CO344033   CO344904   EC064969   EC067869   EC073009   EC077069   EC079922   EC080512   EC081357   EC090759   EC194538   EC196063   EC201412   EC203307   EC203687   EC219314   EC223658   EC224177   EC224248   EC232282   EC235878   EC239398   EC242014   EC251248   EC257526   EC257805   EC258516   EC258542
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9W0L6
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0035173    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0035173 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0035173 expression level Developmental Stage   Expression Level embryo 00-02hr    2941 embryo 02-04hr    833 embryo 04-06hr    695 embryo 06-08hr    3651 embryo 08-10hr    3247 embryo 10-12hr    3045 embryo 12-14hr    3784 embryo 14-16hr    6664 embryo 16-18hr    5784 embryo 18-20hr    3408 embryo 20-22hr    2622 embryo 22-24hr    2390 larva L1    1709 larva L2    1430 larva L3 12hr old    804 larva L3 puffstage 1-2    602 larva L3 puffstage 3-6    1515 larva L3 puffstage 7-9    4246 white prepupae new    7375 white prepupae 12hr    12129 white prepupae 24hr    7285 pupae 2d postWPP    3683 pupae 3d postWPP    2537 pupae 4d postWPP    5600 adult male 01day    3135 adult male 05day    2427 adult male 30day    2081 adult female 01day    4075 adult female 05day    3534 adult female 30day    3684 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2941) embryo 02-04hr  (833) embryo 04-06hr  (695) embryo 06-08hr  (3651) embryo 08-10hr  (3247) embryo 10-12hr  (3045) embryo 12-14hr  (3784) embryo 14-16hr  (6664) embryo 16-18hr  (5784) embryo 18-20hr  (3408) embryo 20-22hr  (2622) embryo 22-24hr  (2390) larva L1  (1709) larva L2  (1430) larva L3 12hr old  (804) larva L3 puffstage 1-2  (602) larva L3 puffstage 3-6  (1515) larva L3 puffstage 7-9  (4246) white prepupae new  (7375) white prepupae 12hr  (12129) white prepupae 24hr  (7285) pupae 2d postWPP  (3683) pupae 3d postWPP  (2537) pupae 4d postWPP  (5600) adult male 01day  (3135) adult male 05day  (2427) adult male 30day  (2081) adult female 01day  (4075) adult female 05day  (3534) adult female 30day  (3684) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2941) embryo 02-04hr    833 embryo 04-06hr    695 embryo 06-08hr  (3651) embryo 08-10hr  (3247) embryo 10-12hr  (3045) embryo 12-14hr  (3784) embryo 14-16hr  (6664) embryo 16-18hr  (5784) embryo 18-20hr  (3408) embryo 20-22hr  (2622) embryo 22-24hr  (2390) larva L1  (1709) larva L2  1430 larva L3 12hr old    804 larva L3 puffstage 1-2    602 larva L3 puffstage 3-6  (1515) larva L3 puffstage 7-9  (4246) white prepupae new  (7375) white prepupae 12hr  (12129) white prepupae 24hr  (7285) pupae 2d postWPP  (3683) pupae 3d postWPP  (2537) pupae 4d postWPP  (5600) adult male 01day  (3135) adult male 05day  (2427) adult male 30day  (2081) adult female 01day  (4075) adult female 05day  (3534) adult female 30day  (3684) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2941 embryo 02-04hr    833 embryo 04-06hr    695 embryo 06-08hr    3651 embryo 08-10hr    3247 embryo 10-12hr    3045 embryo 12-14hr    3784 embryo 14-16hr    6664 embryo 16-18hr    5784 embryo 18-20hr    3408 embryo 20-22hr    2622 embryo 22-24hr    2390 larva L1    1709 larva L2    1430 larva L3 12hr old    804 larva L3 puffstage 1-2    602 larva L3 puffstage 3-6    1515 larva L3 puffstage 7-9    4246 white prepupae new    7375 white prepupae 12hr  (12129) white prepupae 24hr    7285 pupae 2d postWPP    3683 pupae 3d postWPP    2537 pupae 4d postWPP    5600 adult male 01day    3135 adult male 05day    2427 adult male 30day    2081 adult female 01day    4075 adult female 05day    3534 adult female 30day    3684 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2941 embryo 02-04hr    833 embryo 04-06hr    695 embryo 06-08hr    3651 embryo 08-10hr    3247 embryo 10-12hr    3045 embryo 12-14hr    3784 embryo 14-16hr    6664 embryo 16-18hr    5784 embryo 18-20hr    3408 embryo 20-22hr    2622 embryo 22-24hr    2390 larva L1    1709 larva L2    1430 larva L3 12hr old    804 larva L3 puffstage 1-2    602 larva L3 puffstage 3-6    1515 larva L3 puffstage 7-9    4246 white prepupae new    7375 white prepupae 12hr    12129 white prepupae 24hr    7285 pupae 2d postWPP    3683 pupae 3d postWPP    2537 pupae 4d postWPP    5600 adult male 01day    3135 adult male 05day    2427 adult male 30day    2081 adult female 01day    4075 adult female 05day    3534 adult female 30day    3684 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0035173 expression level Developmental Stage   Expression Level embryo 00-02hr    2941 embryo 02-04hr    833 embryo 04-06hr    695 embryo 06-08hr    3651 embryo 08-10hr    3247 embryo 10-12hr    3045 embryo 12-14hr    3784 embryo 14-16hr    6664 embryo 16-18hr    5784 embryo 18-20hr    3408 embryo 20-22hr    2622 embryo 22-24hr    2390 larva L1    1709 larva L2    1430 larva L3 12hr old    804 larva L3 puffstage 1-2    602 larva L3 puffstage 3-6    1515 larva L3 puffstage 7-9    4246 white prepupae new    7375 white prepupae 12hr    12129 white prepupae 24hr    7285 pupae 2d postWPP    3683 pupae 3d postWPP    2537 pupae 4d postWPP    5600 adult male 01day    3135 adult male 05day    2427 adult male 30day    2081 adult female 01day    4075 adult female 05day    3534 adult female 30day    3684 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2941) embryo 02-04hr  (833) embryo 04-06hr  (695) embryo 06-08hr  (3651) embryo 08-10hr  (3247) embryo 10-12hr  (3045) embryo 12-14hr  (3784) embryo 14-16hr  (6664) embryo 16-18hr  (5784) embryo 18-20hr  (3408) embryo 20-22hr  (2622) embryo 22-24hr  (2390) larva L1  (1709) larva L2  (1430) larva L3 12hr old  (804) larva L3 puffstage 1-2  (602) larva L3 puffstage 3-6  (1515) larva L3 puffstage 7-9  (4246) white prepupae new  (7375) white prepupae 12hr  (12129) white prepupae 24hr  (7285) pupae 2d postWPP  (3683) pupae 3d postWPP  (2537) pupae 4d postWPP  (5600) adult male 01day  (3135) adult male 05day  (2427) adult male 30day  (2081) adult female 01day  (4075) adult female 05day  (3534) adult female 30day  (3684) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2941) embryo 02-04hr    833 embryo 04-06hr    695 embryo 06-08hr  (3651) embryo 08-10hr  (3247) embryo 10-12hr  (3045) embryo 12-14hr  (3784) embryo 14-16hr  (6664) embryo 16-18hr  (5784) embryo 18-20hr  (3408) embryo 20-22hr  (2622) embryo 22-24hr  2390 larva L1  1709 larva L2  1430 larva L3 12hr old    804 larva L3 puffstage 1-2    602 larva L3 puffstage 3-6  1515 larva L3 puffstage 7-9  (4246) white prepupae new  (7375) white prepupae 12hr  (12129) white prepupae 24hr  (7285) pupae 2d postWPP  (3683) pupae 3d postWPP  (2537) pupae 4d postWPP  (5600) adult male 01day  (3135) adult male 05day  2427 adult male 30day  2081 adult female 01day  (4075) adult female 05day  (3534) adult female 30day  (3684) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2941 embryo 02-04hr    833 embryo 04-06hr    695 embryo 06-08hr    3651 embryo 08-10hr    3247 embryo 10-12hr    3045 embryo 12-14hr    3784 embryo 14-16hr    6664 embryo 16-18hr    5784 embryo 18-20hr    3408 embryo 20-22hr    2622 embryo 22-24hr    2390 larva L1    1709 larva L2    1430 larva L3 12hr old    804 larva L3 puffstage 1-2    602 larva L3 puffstage 3-6    1515 larva L3 puffstage 7-9    4246 white prepupae new    7375 white prepupae 12hr  12129 white prepupae 24hr    7285 pupae 2d postWPP    3683 pupae 3d postWPP    2537 pupae 4d postWPP    5600 adult male 01day    3135 adult male 05day    2427 adult male 30day    2081 adult female 01day    4075 adult female 05day    3534 adult female 30day    3684 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2941 embryo 02-04hr    833 embryo 04-06hr    695 embryo 06-08hr    3651 embryo 08-10hr    3247 embryo 10-12hr    3045 embryo 12-14hr    3784 embryo 14-16hr    6664 embryo 16-18hr    5784 embryo 18-20hr    3408 embryo 20-22hr    2622 embryo 22-24hr    2390 larva L1    1709 larva L2    1430 larva L3 12hr old    804 larva L3 puffstage 1-2    602 larva L3 puffstage 3-6    1515 larva L3 puffstage 7-9    4246 white prepupae new    7375 white prepupae 12hr    12129 white prepupae 24hr    7285 pupae 2d postWPP    3683 pupae 3d postWPP    2537 pupae 4d postWPP    5600 adult male 01day    3135 adult male 05day    2427 adult male 30day    2081 adult female 01day    4075 adult female 05day    3534 adult female 30day    3684 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0035173    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0035173 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult hindgut. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval hindgut, adult Malpighian tubules, adult heart, adult salivary gland, adult ovary, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0035173 expression level Tissue   Expression Level Larval Central Nervous System    206.75 Larval Midgut    372.1 Larval Hindgut    225.4 Larval Malpighian Tubules    83.5 Larval Fat Body    5.4 Larval Salivary Gland    3.6 Larval Trachea    8.7 Larval Carcass    206.4 Adult Head    157.2 Adult Eye    118.675 Adult Brain    265.6 Adult Thoracic-Abdominal Ganglion    357.5 Adult Crop    184.1 Adult Midgut    311.5 Adult Hindgut    721.6 Adult Malpighian Tubules    201.4 Adult Fat Body    79.9 Adult Salivary Gland    138 Adult Heart    128.1 Adult VirginFemale Spermatheca    61.1 Adult InseminatedFemale Spermatheca    88.3 Adult Ovary    422.6 Adult Testis    26 Adult Male Accessory Gland    188.8 Adult Carcass    182.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    206.75 Larval Midgut    372.1 Larval Hindgut    225.4 Larval Malpighian Tubules    83.5 Larval Fat Body    5.4 Larval Salivary Gland    3.6 Larval Trachea    8.7 Larval Carcass    206.4 Adult Head    157.2 Adult Eye    118.675 Adult Brain    265.6 Adult Thoracic-Abdominal Ganglion    357.5 Adult Crop    184.1 Adult Midgut    311.5 Adult Hindgut  (721.6) Adult Malpighian Tubules    201.4 Adult Fat Body    79.9 Adult Salivary Gland    138 Adult Heart    128.1 Adult VirginFemale Spermatheca    61.1 Adult InseminatedFemale Spermatheca    88.3 Adult Ovary    422.6 Adult Testis    26 Adult Male Accessory Gland    188.8 Adult Carcass    182.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    206.75 Larval Midgut    372.1 Larval Hindgut    225.4 Larval Malpighian Tubules    83.5 Larval Fat Body    5.4 Larval Salivary Gland    3.6 Larval Trachea    8.7 Larval Carcass    206.4 Adult Head    157.2 Adult Eye    118.675 Adult Brain    265.6 Adult Thoracic-Abdominal Ganglion    357.5 Adult Crop    184.1 Adult Midgut    311.5 Adult Hindgut    721.6 Adult Malpighian Tubules    201.4 Adult Fat Body    79.9 Adult Salivary Gland    138 Adult Heart    128.1 Adult VirginFemale Spermatheca    61.1 Adult InseminatedFemale Spermatheca    88.3 Adult Ovary    422.6 Adult Testis    26 Adult Male Accessory Gland    188.8 Adult Carcass    182.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    206.75 Larval Midgut    372.1 Larval Hindgut    225.4 Larval Malpighian Tubules    83.5 Larval Fat Body    5.4 Larval Salivary Gland    3.6 Larval Trachea    8.7 Larval Carcass    206.4 Adult Head    157.2 Adult Eye    118.675 Adult Brain    265.6 Adult Thoracic-Abdominal Ganglion    357.5 Adult Crop    184.1 Adult Midgut    311.5 Adult Hindgut    721.6 Adult Malpighian Tubules    201.4 Adult Fat Body    79.9 Adult Salivary Gland    138 Adult Heart    128.1 Adult VirginFemale Spermatheca    61.1 Adult InseminatedFemale Spermatheca    88.3 Adult Ovary    422.6 Adult Testis    26 Adult Male Accessory Gland    188.8 Adult Carcass    182.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0035173 expression level Tissue   Expression Level Larval Central Nervous System    206.75 Larval Midgut    372.1 Larval Hindgut    225.4 Larval Malpighian Tubules    83.5 Larval Fat Body    5.4 Larval Salivary Gland    3.6 Larval Trachea    8.7 Larval Carcass    206.4 Adult Head    157.2 Adult Eye    118.675 Adult Brain    265.6 Adult Thoracic-Abdominal Ganglion    357.5 Adult Crop    184.1 Adult Midgut    311.5 Adult Hindgut    721.6 Adult Malpighian Tubules    201.4 Adult Fat Body    79.9 Adult Salivary Gland    138 Adult Heart    128.1 Adult VirginFemale Spermatheca    61.1 Adult InseminatedFemale Spermatheca    88.3 Adult Ovary    422.6 Adult Testis    26 Adult Male Accessory Gland    188.8 Adult Carcass    182.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    206.75 Larval Midgut    372.1 Larval Hindgut    225.4 Larval Malpighian Tubules    83.5 Larval Fat Body    5.4 Larval Salivary Gland    3.6 Larval Trachea    8.7 Larval Carcass    206.4 Adult Head    157.2 Adult Eye    118.675 Adult Brain    265.6 Adult Thoracic-Abdominal Ganglion    357.5 Adult Crop    184.1 Adult Midgut    311.5 Adult Hindgut  721.6 Adult Malpighian Tubules    201.4 Adult Fat Body    79.9 Adult Salivary Gland    138 Adult Heart    128.1 Adult VirginFemale Spermatheca    61.1 Adult InseminatedFemale Spermatheca    88.3 Adult Ovary    422.6 Adult Testis    26 Adult Male Accessory Gland    188.8 Adult Carcass    182.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    206.75 Larval Midgut    372.1 Larval Hindgut    225.4 Larval Malpighian Tubules    83.5 Larval Fat Body    5.4 Larval Salivary Gland    3.6 Larval Trachea    8.7 Larval Carcass    206.4 Adult Head    157.2 Adult Eye    118.675 Adult Brain    265.6 Adult Thoracic-Abdominal Ganglion    357.5 Adult Crop    184.1 Adult Midgut    311.5 Adult Hindgut    721.6 Adult Malpighian Tubules    201.4 Adult Fat Body    79.9 Adult Salivary Gland    138 Adult Heart    128.1 Adult VirginFemale Spermatheca    61.1 Adult InseminatedFemale Spermatheca    88.3 Adult Ovary    422.6 Adult Testis    26 Adult Male Accessory Gland    188.8 Adult Carcass    182.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    206.75 Larval Midgut    372.1 Larval Hindgut    225.4 Larval Malpighian Tubules    83.5 Larval Fat Body    5.4 Larval Salivary Gland    3.6 Larval Trachea    8.7 Larval Carcass    206.4 Adult Head    157.2 Adult Eye    118.675 Adult Brain    265.6 Adult Thoracic-Abdominal Ganglion    357.5 Adult Crop    184.1 Adult Midgut    311.5 Adult Hindgut    721.6 Adult Malpighian Tubules    201.4 Adult Fat Body    79.9 Adult Salivary Gland    138 Adult Heart    128.1 Adult VirginFemale Spermatheca    61.1 Adult InseminatedFemale Spermatheca    88.3 Adult Ovary    422.6 Adult Testis    26 Adult Male Accessory Gland    188.8 Adult Carcass    182.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    157.2   NA  Eye    118.675   NA  Brain    265.6   206.75  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    357.5   NA  Crop    184.1   372.1  Midgut    311.5   225.4  Hindgut    721.6   83.5  Malpighian Tubules    201.4   5.4  Fat Body    79.9   3.6  Salivary Gland    138   NA  Heart    128.1   8.7  Trachea    NA   NA  VirginFemale Spermatheca    61.1   NA  InseminatedFemale Spermatheca    88.3   NA  Ovary    422.6   NA  Testis    26   NA  Male Accessory Gland    188.8   206.4  Carcass    182.6 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_27
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035173 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13907-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG13907 Stages(s) 1-3 Stages(s) 11-12
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG13907 Class Mutagen Stocks Known lesion CG13907G5573 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG13907 Class Mutagen Stocks Known lesion CG13907KK110059 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG13907GD2235 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel6086 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD2235} NA P{KK110059} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{SUPor-P}CG32479KG02681 NA insertion of mobile activating element P{EP}CG13907G5573 NA
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
secondary active monocarboxylate transmembrane transporter activity inferred from sequence or structural similarity with EMBL:AF000240 (FlyBase, 1992-)
Biological Process
CV term Evidence References
transmembrane transport inferred from electronic annotation with InterPro:IPR011701 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
integral to membrane inferred from electronic annotation with InterPro:IPR011701 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG13907 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 63659 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0035173 DroID - A comprehensive database of gene and protein interactions. • FBgn0035173 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38104
Orthologs
Genome-wide drosophilid orthologs	Dana\GF10083 Dere\GG14631 Dgri\GH14694 Dmoj\GI13878 Dper\GL16954 Dpse\GA12617 Dsec\GM14246 Dsim\GD13503 Dvir\GJ11733 Dwil\GK16821 Dyak\GE20989
Curated drosophilid orthologs	Dpse\GA12617
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL000417-PA Aedes aegypti (mosquito) AGAP003206-PA Anopheles gambiae (mosquito) XP_001120917.1 Apis mellifera (honey bee) XP_001947578.1 Acyrthosiphon pisum (pea aphid) 36464 Batrachochytrium dendrobatidis (chytrid fungus) BGIBMGA011576-PA Bombyx mori (silk worm) CN21658 Caenorhabditis brenneri (small nematode) CBP36788 Caenorhabditis briggsae (nematode) CE39589 Caenorhabditis elegans (worm) ENSCAFP00000002062 Canis familiaris (dog) CAGL0I09086g Candida glabrata (haploid yeast) JA06096 Caenorhabditis japonica (nematode) cn01406 Cryptococcus neoformans (yeast-like fungus) CPIJ002845 Culex pipens (mosquito) RP44309 Caenorhabditis remanei (nematode) 170895 Capitella spl (polychaete worm) DEHA2G06754g Debaryomyces Hansenii (yeast) 326804 Daphnia pulex (daphnia) ENSDARP00000073117 Danio rerio (zebra fish) ENSECAP00000016135 Equus caballus (horse) ENSGACP00000010513 Gymnopilus aculeatus (mushroom) ENSGALP00000004563 Gallus gallus (chicken) ENSP00000295190 Homo sapiens (human) ISCW023788-PA Ixodes scapularis (deer tick) KLLA0A00132g Kluyveromyces lactis (yeast) KLLA0B00143g Kluyveromyces lactis (yeast) KLLA0C00132g Kluyveromyces lactis (yeast) KLLA0D00143g Kluyveromyces lactis (yeast) KLLA0D20009g Kluyveromyces lactis (yeast) KLLA0E00133g Kluyveromyces lactis (yeast) KLLA0F00154g Kluyveromyces lactis (yeast) 92970 Lottia gigantea (owl limpet) ENSMODP00000026531 Monodelphis domestica (gray opossum) ENSMMUP00000011270 Macaca mulatta (rhesus monkey) ENSMUSP00000027422 Mus musculus (house mouse) XP_001607269.1 Nasonia vitripennis (wasp) PHUM002974-PA Pediculus humanus (human body louse) PP18860 Pristionchus pacificus (nematode) ENSPPYP00000014813 Pongo pygmaeus (orangutan) ENSPTRP00000022240 Pan troglodytes (chimpanzee) PVX_003965 Plasmodium vivax (protozoal parasite) ENSRNOP00000022982 Rattus norvegicus (norway rat) YNL125C Saccharomyces cerevisiae (budding yeast) Smp_168000 Schistosoma mansoni (trematode parasite) XP_974143.1 Tribolium castaneum (red flour beetle) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB11688 NV11593 LH10306 FBgn0238272 FBgn0218821 FBgn0198987 FBgn0185214 FBgn0169172 FBgn0072663 FBgn0154558 FBgn0136632 FBgn0122170 FBgn0106887 FBgn0087124 CPIJ002845 BGIBMGA011576 ACYPI003418 GB11874 AGAP003206 AAEL000417 PHUM517490 GLEAN_01278
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
Bloomington	27954 y1 w*; P{EP}CG13907G5573 CG32479G5573
VDRC	v107339 P{KK110059}VIE-260B
Genomic Clones ( 1 )
	BACR02N23 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 90 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH22266
Other clones	DPiM_GH22266
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT11644 AT21744 AT31722 GH05792 GH12652 HL04240 HL04253 LD20318 LD45207 LP01643 LP08624 LP23376 RE02052 RE14217 RE14736 RE20464 RE21395 RE22103 RE22536 RE22644 RE23044 RE23979 RE24630 RE24705 RE24742 RE26675 RE28919 RE30312 RE33628 RE43102 RE52623 RE58455 RE63189 RE69970 RE70856 RE72013 SD05443 SD17679 SD23416 SD24696
Other clones	7078 35138 64242 72745 73623 75973 75989 103750 121137 125677 150103 191522 214287.22 214371.25 214383.28 214449.27 277653 281528 281722 CK01.18B.E9 CK01.35C.G6 CK01.76A.G1 CK01.80D.E4 CK01.85D.B12 CK01.101D.H12 CK02616 EK030345 EK053753 EK058038 EK059425 EK067938 EK075532 EK085962 EK125350 EK145221 EK189714 EK201649 EK205544 EK241217 EK247663 EK294718 EK306748 EP18546 EP20328 ESG014c.E21_G07 ESG0119d.B21_C03 ESG0119d.B21_F08 FGC028H07
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0035173 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38104
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_138225 RefSeq (Proteins) • NP_612069 DDBJ / EMBL / GenBank • AAF47427 AAL90251 AI258441 AI402926 AW940854 AY089513 Entrez Gene - A searchable database of RefSeq genes. • 38104 UniProtKB/TrEMBL • Q9W0L6
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Major facilitator superfamily (IPR011701) Major facilitator superfamily domain, general substrate transporter (IPR016196)
Linkouts
	BioGRID - A database of protein and genetic interactions • 63659 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0035173 DroID - A comprehensive database of gene and protein interactions. • FBgn0035173 DRSC - Results from RNAi screens. • FBgn0035173 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035173 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13907-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0035173 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38104 InParanoid A subset of ortholog calls from InParanoid. • AAEL000417-PA Aedes aegypti (mosquito) AGAP003206-PA Anopheles gambiae (mosquito) XP_001120917.1 Apis mellifera (honey bee) XP_001947578.1 Acyrthosiphon pisum (pea aphid) 36464 Batrachochytrium dendrobatidis (chytrid fungus) BGIBMGA011576-PA Bombyx mori (silk worm) CN21658 Caenorhabditis brenneri (small nematode) CBP36788 Caenorhabditis briggsae (nematode) CE39589 Caenorhabditis elegans (worm) ENSCAFP00000002062 Canis familiaris (dog) CAGL0I09086g Candida glabrata (haploid yeast) JA06096 Caenorhabditis japonica (nematode) cn01406 Cryptococcus neoformans (yeast-like fungus) CPIJ002845 Culex pipens (mosquito) RP44309 Caenorhabditis remanei (nematode) 170895 Capitella spl (polychaete worm) DEHA2G06754g Debaryomyces Hansenii (yeast) 326804 Daphnia pulex (daphnia) ENSDARP00000073117 Danio rerio (zebra fish) ENSECAP00000016135 Equus caballus (horse) ENSGACP00000010513 Gymnopilus aculeatus (mushroom) ENSGALP00000004563 Gallus gallus (chicken) ENSP00000295190 Homo sapiens (human) ISCW023788-PA Ixodes scapularis (deer tick) KLLA0A00132g Kluyveromyces lactis (yeast) KLLA0B00143g Kluyveromyces lactis (yeast) KLLA0C00132g Kluyveromyces lactis (yeast) KLLA0D00143g Kluyveromyces lactis (yeast) KLLA0D20009g Kluyveromyces lactis (yeast) KLLA0E00133g Kluyveromyces lactis (yeast) KLLA0F00154g Kluyveromyces lactis (yeast) 92970 Lottia gigantea (owl limpet) ENSMODP00000026531 Monodelphis domestica (gray opossum) ENSMMUP00000011270 Macaca mulatta (rhesus monkey) ENSMUSP00000027422 Mus musculus (house mouse) XP_001607269.1 Nasonia vitripennis (wasp) PHUM002974-PA Pediculus humanus (human body louse) PP18860 Pristionchus pacificus (nematode) ENSPPYP00000014813 Pongo pygmaeus (orangutan) ENSPTRP00000022240 Pan troglodytes (chimpanzee) PVX_003965 Plasmodium vivax (protozoal parasite) ENSRNOP00000022982 Rattus norvegicus (norway rat) YNL125C Saccharomyces cerevisiae (budding yeast) Smp_168000 Schistosoma mansoni (trematode parasite) XP_974143.1 Tribolium castaneum (red flour beetle) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38104 modMine - Data generated by the modENCODE project. • FBgn0035173 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB11688 NV11593 LH10306 FBgn0238272 FBgn0218821 FBgn0198987 FBgn0185214 FBgn0169172 FBgn0072663 FBgn0154558 FBgn0136632 FBgn0122170 FBgn0106887 FBgn0087124 CPIJ002845 BGIBMGA011576 ACYPI003418 GB11874 AGAP003206 AAEL000417 PHUM517490 GLEAN_01278
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG13907 (Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
References ( 14 )
Supplementary material	Khanna et al., 2010, BMC Genomics 11(1): Towards a membrane proteome in Drosophila: a method for the isolation of plasma membrane. [FBrf0210978] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Bellen, 2009.6.29, BDGP_2009_0629.GenExel.xml BDGP_2009_0629.GenExel.xml [FBrf0208121] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]
Curated genome annotation	Ketchum, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126677]