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Gene Dmel\CG2199

General Information
Symbol	Dmel\CG2199	Species	D. melanogaster
Name		Annotation symbol	CG2199
Feature type	protein_coding_gene	FlyBase ID	FBgn0035213
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	61F7-61F7	Sequence location	3L:1,339,460..1,342,403 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG2199 (FBgn0035213). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: zinc ion binding; nucleic acid binding. The biological processes in which it is involved are not known. 4 alleles are reported. The phenotype of these alleles is annotated with: trichogen cell. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Zinc finger C2H2-type/integrase DNA-binding domain; Zinc finger, C2H2; Zinc finger, C2H2-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 06-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult ovary, adult male accessory gland. Comments on Affy2 ProbeSet: ProbeSet 1633717_a_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG2199. Gene sequence location is 3L:1339460..1342403.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 61F7-61F7   Limits computationally determined from genome sequence between P{PZ}l(3)0264002640 and P{EP}rhoEP3704&P{PZ}l(3)0622606226
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG2199 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.45 DGC clone appears problematic (LD32068): incomplete CDS.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG2199-RA FBtr0072722  NM_138260   2846   724 CG2199-RB FBtr0072721  NM_167873   2576   733 CG2199-RC FBtr0331865  NM_001274323   2640   724
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG2199-PA   FBpp0072606   80.9   724   8.82     NP_612104   AAF47485 CG2199-PB   FBpp0072605   82.0   733   8.77     NP_728599   AAN11474 CG2199-PC   FBpp0304249   80.9   724   8.82     NP_001261252   AGB93947
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, C2H2 (IPR007087) Zinc finger, C2H2-like (IPR015880) Zinc finger C2H2-type/integrase DNA-binding domain (IPR013087)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201391   AA392308   AA438498   AA439036   AA540716   AA978531   AA978606   AE014296 AAF47485   AE014296 AAN11474   AE014296 AGB93947   AI135537   AI513926   AI515682   AW943117   AY051809 AAK93233   BF488759   BG636071   BG637441   BI141867   BI216612   BI228756   BI239880   BI242889   BI352473   BI370627   BI372383   BI374729   BI374743   BI639065   BT011367   BT024237   BT031286   BT132936   CO262270   CO266656   CO271638   CO273300   CO274252   CO284331   CO290257   CO291086   CO300280   CO303439   CO305684   CO306579   CO307087   CO308061   CO310573   CO310814   CO315850   CO330059   CZ467703   EC060114   EC060460   EC061608   EC068323   EC070532   EC075837   EC085601   EC086178   EC088577   EC090304   EC196422   EC198888   EC203704   EC230981   EC232450   EC238018   EC238416   EC239435   EC248036   EC249154   EC249298
UniProtKB/Swiss-Prot	Q8IRH5
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 9 -- 10   anterior endoderm   (Fisher et al., 2012) foregut primordium   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) foregut primordium   (Fisher et al., 2012) hindgut proper primordium   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) somatic muscle primordium   (Fisher et al., 2012) Comment:reported as muscle system primordium visceral muscle primordium   (Fisher et al., 2012) Comment:reported as muscle system primordium trunk mesoderm   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval muscle system   (Fisher et al., 2012) gastric caecum   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Wasbrough et al., 2010)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult ovary, adult male accessory gland. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    153.325 Larval Midgut    42.5 Larval Hindgut    61.4 Larval Malpighian Tubules    35 Larval Fat Body    32.2 Larval Salivary Gland    66.6 Larval Trachea    84.775 Larval Carcass    55.225 Adult Head    55.8 Adult Eye    40.875 Adult Brain    60 Adult Thoracic-Abdominal Ganglion    42.9 Adult Crop    43.1 Adult Midgut    68.4 Adult Hindgut    49 Adult Malpighian Tubules    43.9 Adult Fat Body    65.7 Adult Salivary Gland    56.4 Adult Heart    35.7 Adult VirginFemale Spermatheca    39.1 Adult InseminatedFemale Spermatheca    57 Adult Ovary    480.1 Adult Testis    23.3 Adult Male Accessory Gland    116.2 Adult Carcass    52.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    153.325 Larval Midgut    42.5 Larval Hindgut    61.4 Larval Malpighian Tubules    35 Larval Fat Body    32.2 Larval Salivary Gland    66.6 Larval Trachea    84.775 Larval Carcass    55.225 Adult Head    55.8 Adult Eye    40.875 Adult Brain    60 Adult Thoracic-Abdominal Ganglion    42.9 Adult Crop    43.1 Adult Midgut    68.4 Adult Hindgut    49 Adult Malpighian Tubules    43.9 Adult Fat Body    65.7 Adult Salivary Gland    56.4 Adult Heart    35.7 Adult VirginFemale Spermatheca    39.1 Adult InseminatedFemale Spermatheca    57 Adult Ovary    480.1 Adult Testis    23.3 Adult Male Accessory Gland    116.2 Adult Carcass    52.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    153.325 Larval Midgut    42.5 Larval Hindgut    61.4 Larval Malpighian Tubules    35 Larval Fat Body    32.2 Larval Salivary Gland    66.6 Larval Trachea    84.775 Larval Carcass    55.225 Adult Head    55.8 Adult Eye    40.875 Adult Brain    60 Adult Thoracic-Abdominal Ganglion    42.9 Adult Crop    43.1 Adult Midgut    68.4 Adult Hindgut    49 Adult Malpighian Tubules    43.9 Adult Fat Body    65.7 Adult Salivary Gland    56.4 Adult Heart    35.7 Adult VirginFemale Spermatheca    39.1 Adult InseminatedFemale Spermatheca    57 Adult Ovary    480.1 Adult Testis    23.3 Adult Male Accessory Gland    116.2 Adult Carcass    52.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    153.325 Larval Midgut    42.5 Larval Hindgut    61.4 Larval Malpighian Tubules    35 Larval Fat Body    32.2 Larval Salivary Gland    66.6 Larval Trachea    84.775 Larval Carcass    55.225 Adult Head    55.8 Adult Eye    40.875 Adult Brain    60 Adult Thoracic-Abdominal Ganglion    42.9 Adult Crop    43.1 Adult Midgut    68.4 Adult Hindgut    49 Adult Malpighian Tubules    43.9 Adult Fat Body    65.7 Adult Salivary Gland    56.4 Adult Heart    35.7 Adult VirginFemale Spermatheca    39.1 Adult InseminatedFemale Spermatheca    57 Adult Ovary    480.1 Adult Testis    23.3 Adult Male Accessory Gland    116.2 Adult Carcass    52.9 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    153.325 Larval Midgut    42.5 Larval Hindgut    61.4 Larval Malpighian Tubules    35 Larval Fat Body    32.2 Larval Salivary Gland    66.6 Larval Trachea    84.775 Larval Carcass    55.225 Adult Head    55.8 Adult Eye    40.875 Adult Brain    60 Adult Thoracic-Abdominal Ganglion    42.9 Adult Crop    43.1 Adult Midgut    68.4 Adult Hindgut    49 Adult Malpighian Tubules    43.9 Adult Fat Body    65.7 Adult Salivary Gland    56.4 Adult Heart    35.7 Adult VirginFemale Spermatheca    39.1 Adult InseminatedFemale Spermatheca    57 Adult Ovary    480.1 Adult Testis    23.3 Adult Male Accessory Gland    116.2 Adult Carcass    52.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    153.325 Larval Midgut    42.5 Larval Hindgut    61.4 Larval Malpighian Tubules    35 Larval Fat Body    32.2 Larval Salivary Gland    66.6 Larval Trachea    84.775 Larval Carcass    55.225 Adult Head    55.8 Adult Eye    40.875 Adult Brain    60 Adult Thoracic-Abdominal Ganglion    42.9 Adult Crop    43.1 Adult Midgut    68.4 Adult Hindgut    49 Adult Malpighian Tubules    43.9 Adult Fat Body    65.7 Adult Salivary Gland    56.4 Adult Heart    35.7 Adult VirginFemale Spermatheca    39.1 Adult InseminatedFemale Spermatheca    57 Adult Ovary    480.1 Adult Testis    23.3 Adult Male Accessory Gland    116.2 Adult Carcass    52.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    153.325 Larval Midgut    42.5 Larval Hindgut    61.4 Larval Malpighian Tubules    35 Larval Fat Body    32.2 Larval Salivary Gland    66.6 Larval Trachea    84.775 Larval Carcass    55.225 Adult Head    55.8 Adult Eye    40.875 Adult Brain    60 Adult Thoracic-Abdominal Ganglion    42.9 Adult Crop    43.1 Adult Midgut    68.4 Adult Hindgut    49 Adult Malpighian Tubules    43.9 Adult Fat Body    65.7 Adult Salivary Gland    56.4 Adult Heart    35.7 Adult VirginFemale Spermatheca    39.1 Adult InseminatedFemale Spermatheca    57 Adult Ovary    480.1 Adult Testis    23.3 Adult Male Accessory Gland    116.2 Adult Carcass    52.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    153.325 Larval Midgut    42.5 Larval Hindgut    61.4 Larval Malpighian Tubules    35 Larval Fat Body    32.2 Larval Salivary Gland    66.6 Larval Trachea    84.775 Larval Carcass    55.225 Adult Head    55.8 Adult Eye    40.875 Adult Brain    60 Adult Thoracic-Abdominal Ganglion    42.9 Adult Crop    43.1 Adult Midgut    68.4 Adult Hindgut    49 Adult Malpighian Tubules    43.9 Adult Fat Body    65.7 Adult Salivary Gland    56.4 Adult Heart    35.7 Adult VirginFemale Spermatheca    39.1 Adult InseminatedFemale Spermatheca    57 Adult Ovary    480.1 Adult Testis    23.3 Adult Male Accessory Gland    116.2 Adult Carcass    52.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    55.8   NA  Eye    40.875   NA  Brain    60   153.325  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    42.9   NA  Crop    43.1   42.5  Midgut    68.4   61.4  Hindgut    49   35  Malpighian Tubules    43.9   32.2  Fat Body    65.7   66.6  Salivary Gland    56.4   NA  Heart    35.7   84.775  Trachea    NA   NA  VirginFemale Spermatheca    39.1   NA  InseminatedFemale Spermatheca    57   NA  Ovary    480.1   NA  Testis    23.3   NA  Male Accessory Gland    116.2   55.225  Carcass    52.9 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    12 central nervous system, larvae L3    17 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    6 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    2 fat body, white prepupae    4 fat body, pupae P8    5 carcass, larvae L3 wandering    10 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    6 ovary, virgin 4-day female    74 ovary, mated 4-day female    69 testis, mated 4-day male    2 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    12 central nervous system, larvae L3    17 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    6 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    2 fat body, white prepupae    4 fat body, pupae P8    5 carcass, larvae L3 wandering    10 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    6 ovary, virgin 4-day female  (74) ovary, mated 4-day female  (69) testis, mated 4-day male    2 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    12 central nervous system, larvae L3    17 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    6 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    2 fat body, white prepupae    4 fat body, pupae P8    5 carcass, larvae L3 wandering    10 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    6 ovary, virgin 4-day female    74 ovary, mated 4-day female    69 testis, mated 4-day male    2 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    12 central nervous system, larvae L3    17 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    6 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    2 fat body, white prepupae    4 fat body, pupae P8    5 carcass, larvae L3 wandering    10 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    6 ovary, virgin 4-day female    74 ovary, mated 4-day female    69 testis, mated 4-day male    2 accessory gland, mated 4-day male    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    12 central nervous system, larvae L3    17 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    6 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    2 fat body, white prepupae    4 fat body, pupae P8    5 carcass, larvae L3 wandering    10 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    6 ovary, virgin 4-day female    74 ovary, mated 4-day female    69 testis, mated 4-day male    2 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    12 central nervous system, larvae L3    17 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    6 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    2 fat body, white prepupae    4 fat body, pupae P8    5 carcass, larvae L3 wandering    10 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    6 ovary, virgin 4-day female  (74) ovary, mated 4-day female  (69) testis, mated 4-day male    2 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    12 central nervous system, larvae L3    17 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    6 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    2 fat body, white prepupae    4 fat body, pupae P8    5 carcass, larvae L3 wandering    10 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    6 ovary, virgin 4-day female    74 ovary, mated 4-day female    69 testis, mated 4-day male    2 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    12 central nervous system, larvae L3    17 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    6 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    2 fat body, white prepupae    4 fat body, pupae P8    5 carcass, larvae L3 wandering    10 carcass, 1-day adult    5 carcass, 4-day adult    9 carcass, 20-day adult    6 ovary, virgin 4-day female    74 ovary, mated 4-day female    69 testis, mated 4-day male    2 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 06-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    45 embryo 02-04hr    39 embryo 04-06hr    50 embryo 06-08hr    55 embryo 08-10hr    53 embryo 10-12hr    38 embryo 12-14hr    36 embryo 14-16hr    18 embryo 16-18hr    19 embryo 18-20hr    11 embryo 20-22hr    35 embryo 22-24hr    32 larva L1    15 larva L2    10 larva L3 12hr old    6 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    7 white prepupae new    6 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    5 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    2 adult female 01day    13 adult female 05day    33 adult female 30day    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (45) embryo 02-04hr  (39) embryo 04-06hr  (50) embryo 06-08hr  (55) embryo 08-10hr  (53) embryo 10-12hr  (38) embryo 12-14hr  (36) embryo 14-16hr    18 embryo 16-18hr    19 embryo 18-20hr    11 embryo 20-22hr  (35) embryo 22-24hr  (32) larva L1    15 larva L2    10 larva L3 12hr old    6 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    7 white prepupae new    6 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    5 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    2 adult female 01day    13 adult female 05day  (33) adult female 30day  (30) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    45 embryo 02-04hr    39 embryo 04-06hr    50 embryo 06-08hr    55 embryo 08-10hr    53 embryo 10-12hr    38 embryo 12-14hr    36 embryo 14-16hr    18 embryo 16-18hr    19 embryo 18-20hr    11 embryo 20-22hr    35 embryo 22-24hr    32 larva L1    15 larva L2    10 larva L3 12hr old    6 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    7 white prepupae new    6 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    5 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    2 adult female 01day    13 adult female 05day    33 adult female 30day    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    45 embryo 02-04hr    39 embryo 04-06hr    50 embryo 06-08hr    55 embryo 08-10hr    53 embryo 10-12hr    38 embryo 12-14hr    36 embryo 14-16hr    18 embryo 16-18hr    19 embryo 18-20hr    11 embryo 20-22hr    35 embryo 22-24hr    32 larva L1    15 larva L2    10 larva L3 12hr old    6 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    7 white prepupae new    6 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    5 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    2 adult female 01day    13 adult female 05day    33 adult female 30day    30 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    45 embryo 02-04hr    39 embryo 04-06hr    50 embryo 06-08hr    55 embryo 08-10hr    53 embryo 10-12hr    38 embryo 12-14hr    36 embryo 14-16hr    18 embryo 16-18hr    19 embryo 18-20hr    11 embryo 20-22hr    35 embryo 22-24hr    32 larva L1    15 larva L2    10 larva L3 12hr old    6 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    7 white prepupae new    6 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    5 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    2 adult female 01day    13 adult female 05day    33 adult female 30day    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (45) embryo 02-04hr  (39) embryo 04-06hr  (50) embryo 06-08hr  (55) embryo 08-10hr  (53) embryo 10-12hr  (38) embryo 12-14hr  (36) embryo 14-16hr    18 embryo 16-18hr    19 embryo 18-20hr    11 embryo 20-22hr  (35) embryo 22-24hr  32 larva L1    15 larva L2    10 larva L3 12hr old    6 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    7 white prepupae new    6 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    5 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    2 adult female 01day    13 adult female 05day  (33) adult female 30day  30 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    45 embryo 02-04hr    39 embryo 04-06hr    50 embryo 06-08hr    55 embryo 08-10hr    53 embryo 10-12hr    38 embryo 12-14hr    36 embryo 14-16hr    18 embryo 16-18hr    19 embryo 18-20hr    11 embryo 20-22hr    35 embryo 22-24hr    32 larva L1    15 larva L2    10 larva L3 12hr old    6 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    7 white prepupae new    6 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    5 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    2 adult female 01day    13 adult female 05day    33 adult female 30day    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    45 embryo 02-04hr    39 embryo 04-06hr    50 embryo 06-08hr    55 embryo 08-10hr    53 embryo 10-12hr    38 embryo 12-14hr    36 embryo 14-16hr    18 embryo 16-18hr    19 embryo 18-20hr    11 embryo 20-22hr    35 embryo 22-24hr    32 larva L1    15 larva L2    10 larva L3 12hr old    6 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    7 white prepupae new    6 white prepupae 12hr    7 white prepupae 24hr    7 pupae 2d postWPP    5 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    2 adult female 01day    13 adult female 05day    33 adult female 30day    30 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    87 Schneider line 2 Sg4    19 embryonic 1182-4H    18 embryonic GM2    19 embryonic Kc167    25 embryonic S1    22 embryonic S3    40 leg disc CME L1    30 wing disc CME-W2    34 wing disc ML-DmD8    21 wing disc ML-DmD9    15 wing disc ML-DmD16-c3    35 wing disc ML-DmD21    16 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3    31 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    31 CNS ML-DmBG1-c1    30 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2    42 ovary fGS/OSS    31 ovary OSC    32 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (87) Schneider line 2 Sg4    19 embryonic 1182-4H    18 embryonic GM2    19 embryonic Kc167    25 embryonic S1    22 embryonic S3  (40) leg disc CME L1  (30) wing disc CME-W2  (34) wing disc ML-DmD8    21 wing disc ML-DmD9    15 wing disc ML-DmD16-c3  (35) wing disc ML-DmD21    16 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3  (31) eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5  (30) mixed discs ML-DmD4-c1  (31) CNS ML-DmBG1-c1  (30) CNS ML-DmBG2-c2    21 tumorous blood cells mbn2  (42) ovary fGS/OSS  (31) ovary OSC  (32) ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    87 Schneider line 2 Sg4    19 embryonic 1182-4H    18 embryonic GM2    19 embryonic Kc167    25 embryonic S1    22 embryonic S3    40 leg disc CME L1    30 wing disc CME-W2    34 wing disc ML-DmD8    21 wing disc ML-DmD9    15 wing disc ML-DmD16-c3    35 wing disc ML-DmD21    16 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3    31 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    31 CNS ML-DmBG1-c1    30 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2    42 ovary fGS/OSS    31 ovary OSC    32 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    87 Schneider line 2 Sg4    19 embryonic 1182-4H    18 embryonic GM2    19 embryonic Kc167    25 embryonic S1    22 embryonic S3    40 leg disc CME L1    30 wing disc CME-W2    34 wing disc ML-DmD8    21 wing disc ML-DmD9    15 wing disc ML-DmD16-c3    35 wing disc ML-DmD21    16 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3    31 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    31 CNS ML-DmBG1-c1    30 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2    42 ovary fGS/OSS    31 ovary OSC    32 ovary OSS    22 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    87 Schneider line 2 Sg4    19 embryonic 1182-4H    18 embryonic GM2    19 embryonic Kc167    25 embryonic S1    22 embryonic S3    40 leg disc CME L1    30 wing disc CME-W2    34 wing disc ML-DmD8    21 wing disc ML-DmD9    15 wing disc ML-DmD16-c3    35 wing disc ML-DmD21    16 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3    31 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    31 CNS ML-DmBG1-c1    30 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2    42 ovary fGS/OSS    31 ovary OSC    32 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (87) Schneider line 2 Sg4    19 embryonic 1182-4H    18 embryonic GM2    19 embryonic Kc167    25 embryonic S1    22 embryonic S3  (40) leg disc CME L1  30 wing disc CME-W2  (34) wing disc ML-DmD8    21 wing disc ML-DmD9    15 wing disc ML-DmD16-c3  (35) wing disc ML-DmD21    16 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3  31 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5  30 mixed discs ML-DmD4-c1  31 CNS ML-DmBG1-c1  30 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2  (42) ovary fGS/OSS  31 ovary OSC  32 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    87 Schneider line 2 Sg4    19 embryonic 1182-4H    18 embryonic GM2    19 embryonic Kc167    25 embryonic S1    22 embryonic S3    40 leg disc CME L1    30 wing disc CME-W2    34 wing disc ML-DmD8    21 wing disc ML-DmD9    15 wing disc ML-DmD16-c3    35 wing disc ML-DmD21    16 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3    31 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    31 CNS ML-DmBG1-c1    30 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2    42 ovary fGS/OSS    31 ovary OSC    32 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    87 Schneider line 2 Sg4    19 embryonic 1182-4H    18 embryonic GM2    19 embryonic Kc167    25 embryonic S1    22 embryonic S3    40 leg disc CME L1    30 wing disc CME-W2    34 wing disc ML-DmD8    21 wing disc ML-DmD9    15 wing disc ML-DmD16-c3    35 wing disc ML-DmD21    16 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3    31 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    31 CNS ML-DmBG1-c1    30 CNS ML-DmBG2-c2    21 tumorous blood cells mbn2    42 ovary fGS/OSS    31 ovary OSC    32 ovary OSS    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    49 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    48 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    40 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    33 Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult  (49) Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult  (48) Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3  (30) Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (40) Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult  (33) Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    49 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    48 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    40 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    33 Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    49 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    48 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    40 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    33 Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    49 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    48 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    40 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    33 Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult  (49) Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult  (48) Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3  30 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (40) Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult  (33) Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    49 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    48 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    40 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    33 Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    49 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    48 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    40 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    33 Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_08 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	BDGP expression data • LD32068 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035213 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG2199-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG2199 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG2199GD9748 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 CG2199GD9748 Phenotype manifest in Allele trichogen cell, with Scer\GAL4pnr-MD237 CG2199GD9748
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG2199 Class Mutagen Stocks Known lesion CG2199c02129 piggyBac transposase 1 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG2199 Class Mutagen Stocks Known lesion CG2199GD9748 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG2199JF02428 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG2199NIG.2199R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD9748} NA P{NIG.2199R} NA P{TRiP.JF02428} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{PB}CG2199c02129 NA insertion of mobile activating element P{EPg}HP31858 NA
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
nucleic acid binding inferred from electronic annotation with InterPro:IPR013087 (FlyBase Curators et al., 2004-) zinc ion binding inferred from electronic annotation with InterPro:IPR007087, InterPro:IPR015880 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG2199 - ATPsyn-Cf6 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Ag5r2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Arf51F anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG10082 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG10934 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG11188 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG12341 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG12395 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG12493 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG13539 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG1421 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG14253 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG14419 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG14480 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG14615 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG14695 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG17601 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG17806 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG18048 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG18335 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG18347 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG1943 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG30010 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG30152 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG31637 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG31961 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG3292 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG3548 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) CG2199 - CG3706 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG3919 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG42319 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG43795 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG4622 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG4854 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG4866 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG4962 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG5024 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG5255 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG5516 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG5623 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG5877 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG6330 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG6629 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG6767 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG7164 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG7185 experimental knowledge based (Guruharsha et al., 2011) CG2199 - CG7542 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG7686 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG7739 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG7818 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG8005 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG8671 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG9799 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CG9960 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - CanB anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Crk anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - D1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Dhod anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Dhpr anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - E(spl)m3-HLH anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Fas3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Fer2LCH anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - GM130 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Gnf1 experimental knowledge based (Guruharsha et al., 2011) CG2199 - HPS1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Hakai anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Hmgs anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - MED11 experimental knowledge based (Guruharsha et al., 2011) CG2199 - MED14 experimental knowledge based (Guruharsha et al., 2011) CG2199 - MED17 experimental knowledge based (Guruharsha et al., 2011) CG2199 - Mlc1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Nacα anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Oscillin anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Osi9 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Ote experimental knowledge based (Guruharsha et al., 2011) CG2199 - Pa1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Pdp1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Pnn anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Proct anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Psf3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - REG anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Ras64B anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - RasGAP1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - RluA-1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Rrp45 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Sar1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Seipin anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Smox anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Ssl anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - TFAM experimental knowledge based (Guruharsha et al., 2011) CG2199 - Takr86C anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Thor anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Trf anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Trl anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - Ttc19 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - U4-U6-60K anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - al anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - alrm anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - asun anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - bocksbeutel experimental knowledge based (Guruharsha et al., 2011) CG2199 - brk anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - dbe anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - eIF-4E anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - eIF4E-6 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - exu anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - fan anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - fd102C anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - fh anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - fs(1)h anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - gcl anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - gk anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - grass anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - grau anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - hbn anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - pyx anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - slp1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - spi anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - stai anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - vri anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - wds anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - wee anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - wgn anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG2199 - zpg anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG2199 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 63701 DroID - A comprehensive database of gene and protein interactions. • FBgn0035213 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38159
Orthologs
OrthoDB Orthologs (12) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6WSWWM Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6WSWWM)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG2199     Drosophila simulans   Dsim\GD13481 Y   Drosophila sechellia   Dsec\GM14218 Y   Drosophila erecta   Dere\GG14604 Y   Drosophila yakuba   Dyak\GE20965 Y   Drosophila ananassae   Dana\GF10061 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA15296 Y   Drosophila persimilis   Dper\GL16070 Y   Drosophila willistoni   Dwil\GK12499 Y   Drosophila virilis   Dvir\GJ13203 Y   Drosophila mojavensis   Dmoj\GI13373 Y   Drosophila grimshawi   Dgri\GH16227 Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD13481 Drosophila sechellia Dsec\GM14218 Drosophila erecta Dere\GG14604 Drosophila yakuba Dyak\GE20965 Drosophila ananassae Dana\GF10061 Drosophila pseudoobscura pseudoobscura Dpse\GA15296 Drosophila persimilis Dper\GL16070 Drosophila willistoni Dwil\GK12499 Drosophila virilis Dvir\GJ13203 Drosophila mojavensis Dmoj\GI13373 Drosophila grimshawi Dgri\GH16227
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	27082 y1 v1; P{TRiP.JF02428}attP2
Harvard	- PBac{PB}CG2199c02129
VDRC	v20839 w1118; P{GD9748}v20839
Genomic Clones ( 1 )
	BACR17K17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 65 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD02865 LD32068 RE07256 RE59332
Other clones	FI17108
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT24391 GH13336 GM19422 LD04558 LD10366 LD11154 LD13468 LD20501 LD30777 LD45967 LD47592 RE23811 RE26395 RE36487 RE40375 RE57330 RE62401 RE62416 SD13660 SD15445 SD15829 SD21511
Other clones	10504 10575 33028 36702 57251 65026 82710 99955 121394 144341 146707 148103 153112 159891 192000 192072 CK01.94B.H6 CK01.100C.D1 CK01.116C.D4 CK01.169D.F1 EK073463 EK076109 EK084913 EK104121 EK110422 EK113635 EK147145 EK165813 EK177824 EK222036 EK222559 EK241448 EK249238 EK251509 EK253514 EK256539 EK262755 EK294447
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0035213 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38159
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	FlyBase curator comment: the insertion in the "f06926" Exelixis line (PBac{WH}Ptp61Ff06926) was originally assigned to the CG2199 gene in FBrf0179797, resulting in the "CG2199f06926" (FBal0161936) allele. However, FBrf0184340 shows that the insertion is actually within Ptp61F. (Bloomington Drosophila Stock Center, 2004.11.6)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_138260 NM_167873 NM_001274323 RefSeq (Proteins) • NP_612104 NP_728599 NP_001261252 DDBJ / EMBL / GenBank • AA978606 AAF47485 AAK93233 AAN11474 AGB93947 AW943117 AY051809 BI372383 CZ467703 Entrez Gene - A searchable database of RefSeq genes. • 38159 UniProtKB/Swiss-Prot • Q8IRH5
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, C2H2 (IPR007087) Zinc finger, C2H2-like (IPR015880) Zinc finger C2H2-type/integrase DNA-binding domain (IPR013087) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD32068
Linkouts
	BioGRID - A database of protein and genetic interactions • 63701 DroID - A comprehensive database of gene and protein interactions. • FBgn0035213 DRSC - Results from RNAi screens. • FBgn0035213 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035213 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG2199-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0035213 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38159 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38159 modMine - Data generated by the modENCODE project. • FBgn0035213
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG2199 (Kallappagoudar et al., 2010, Kwon et al., 2008, Perkins et al., 2009.3.31, Rehwinkel et al., 2005, Wei et al., 2003, Jacques et al., 2009, Yu et al., 2010, Wasbrough et al., 2010, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
References ( 29 )
Generate a list of	All references relating to this gene ( 29 )
List References by type	Research paper  ( 7 ) Supplementary material  ( 6 ) Personal communication to FlyBase  ( 10 ) FlyBase analysis  ( 1 ) Stock list  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...