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Gene Dmel\CG13928

General Information
Symbol	Dmel\CG13928	Species	D. melanogaster
Name		Annotation symbol	CG13928
Feature type	protein_coding_gene	FlyBase ID	FBgn0035246
Gene Model Status	Current	Stock availability	8 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	62A9-62A9	Sequence location	3L:1,625,791..1,628,377 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG13928 (FBgn0035246). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: zinc ion binding. The biological processes in which it is involved are not known. 11 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Zinc finger, PHD-type; Zinc finger, PHD-type, conserved site; Zinc finger, RING/FYVE/PHD-type. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 06-18 hour embryonic stages, at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system. Comments on Affy2 ProbeSet: ProbeSet 1637150_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG13928. Gene sequence location is 3L:1625791..1628377.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01	Sequence features BKN29803 BKN45828 HFA08397
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 62A9-62A9   Limits computationally determined from genome sequence between P{EP}rhoEP3704&P{PZ}l(3)0622606226 and P{PZ}dlt04276
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG13928 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG13928-RA FBtr0072822  NM_139378   2587   245
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG13928-PA   FBpp0072702   27.2   245   8.42     NP_647635   AAF47528
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, PHD-type (IPR001965) Zinc finger, PHD-type, conserved site (IPR019786) Zinc finger, RING/FYVE/PHD-type (IPR013083)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014296 AAF47528   AI134066   AI134389   AI134771   AI238060   AI293961   AI405318   AQ025059   AW940428   AY095007 AAM11335   BE977359   BI173588   BI233285   BI486214   BI563362   BI564148   BI564184   BI565665   BI567066   BI567160   BI567230   BI568384   BI569728   BI573465   BI575066   BI576170   BI576629   BI577014   BI582677   BI582730   BI584522   BI585901   BI586437   BI586449   BI587991   BI588785   BI588992   BI589000   BI589062   BI589824   BI589866   BI592277   BI592317   BI592475   BI604856   BI605807   BI608335   BI609935   BI610863   BI614320   BI615067   BI615389   BI615903   BI619291   BI619964   BI623615   BI623797   BI624465   BI626331   BI629229   BI630714   BI631401   BZ665653   BZ665654   CK660725   CL844485   CO187988   CO261929   CO262038   CO264106   CO268622   CO271014   CO272740   CO273979   CO274540   CO274591   CO276653   CO277098   CO295947   CO298471   CO308780   CO308846   CO309823   CO317051   CO317539   CO322398   CO327154   CO328482   CO329457   CO342969   CO343702   EC060375   EC060560   EC061502   EC064559   EC066295   EC066608   EC066627   EC067747   EC070845   EC071710   EC072076   EC075662   EC076462   EC077737   EC082248   EC195220   EC196915   EC198159   EC209066   EC209682   EC221482   EC223486   EC227969   EC228299   EC239340   EC241889   EC251636   EC255695   EC257539   EC258425   EC259613   GH741853   GH743073   GH744100   GH764564   GH766817
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9W0C3
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0035246    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0035246 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 06-18 hour embryonic stages, at stages throughout the pupal period. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0035246 expression level Developmental Stage   Expression Level embryo 00-02hr    34 embryo 02-04hr    124 embryo 04-06hr    166 embryo 06-08hr    1292 embryo 08-10hr    2942 embryo 10-12hr    5632 embryo 12-14hr    5654 embryo 14-16hr    5234 embryo 16-18hr    4681 embryo 18-20hr    3528 embryo 20-22hr    2333 embryo 22-24hr    2569 larva L1    2712 larva L2    1253 larva L3 12hr old    576 larva L3 puffstage 1-2    1085 larva L3 puffstage 3-6    2366 larva L3 puffstage 7-9    3357 white prepupae new    3617 white prepupae 12hr    6569 white prepupae 24hr    7394 pupae 2d postWPP    4694 pupae 3d postWPP    2346 pupae 4d postWPP    1734 adult male 01day    1803 adult male 05day    2066 adult male 30day    2144 adult female 01day    796 adult female 05day    309 adult female 30day    331 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    34 embryo 02-04hr  (124) embryo 04-06hr  (166) embryo 06-08hr  (1292) embryo 08-10hr  (2942) embryo 10-12hr  (5632) embryo 12-14hr  (5654) embryo 14-16hr  (5234) embryo 16-18hr  (4681) embryo 18-20hr  (3528) embryo 20-22hr  (2333) embryo 22-24hr  (2569) larva L1  (2712) larva L2  (1253) larva L3 12hr old  (576) larva L3 puffstage 1-2  (1085) larva L3 puffstage 3-6  (2366) larva L3 puffstage 7-9  (3357) white prepupae new  (3617) white prepupae 12hr  (6569) white prepupae 24hr  (7394) pupae 2d postWPP  (4694) pupae 3d postWPP  (2346) pupae 4d postWPP  (1734) adult male 01day  (1803) adult male 05day  (2066) adult male 30day  (2144) adult female 01day  (796) adult female 05day  (309) adult female 30day  (331) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    34 embryo 02-04hr    124 embryo 04-06hr    166 embryo 06-08hr    1292 embryo 08-10hr  (2942) embryo 10-12hr  (5632) embryo 12-14hr  (5654) embryo 14-16hr  (5234) embryo 16-18hr  (4681) embryo 18-20hr  (3528) embryo 20-22hr  (2333) embryo 22-24hr  (2569) larva L1  (2712) larva L2    1253 larva L3 12hr old    576 larva L3 puffstage 1-2    1085 larva L3 puffstage 3-6  (2366) larva L3 puffstage 7-9  (3357) white prepupae new  (3617) white prepupae 12hr  (6569) white prepupae 24hr  (7394) pupae 2d postWPP  (4694) pupae 3d postWPP  (2346) pupae 4d postWPP  (1734) adult male 01day  (1803) adult male 05day  (2066) adult male 30day  (2144) adult female 01day    796 adult female 05day    309 adult female 30day    331 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    34 embryo 02-04hr    124 embryo 04-06hr    166 embryo 06-08hr    1292 embryo 08-10hr    2942 embryo 10-12hr    5632 embryo 12-14hr    5654 embryo 14-16hr    5234 embryo 16-18hr    4681 embryo 18-20hr    3528 embryo 20-22hr    2333 embryo 22-24hr    2569 larva L1    2712 larva L2    1253 larva L3 12hr old    576 larva L3 puffstage 1-2    1085 larva L3 puffstage 3-6    2366 larva L3 puffstage 7-9    3357 white prepupae new    3617 white prepupae 12hr    6569 white prepupae 24hr    7394 pupae 2d postWPP    4694 pupae 3d postWPP    2346 pupae 4d postWPP    1734 adult male 01day    1803 adult male 05day    2066 adult male 30day    2144 adult female 01day    796 adult female 05day    309 adult female 30day    331 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    34 embryo 02-04hr    124 embryo 04-06hr    166 embryo 06-08hr    1292 embryo 08-10hr    2942 embryo 10-12hr    5632 embryo 12-14hr    5654 embryo 14-16hr    5234 embryo 16-18hr    4681 embryo 18-20hr    3528 embryo 20-22hr    2333 embryo 22-24hr    2569 larva L1    2712 larva L2    1253 larva L3 12hr old    576 larva L3 puffstage 1-2    1085 larva L3 puffstage 3-6    2366 larva L3 puffstage 7-9    3357 white prepupae new    3617 white prepupae 12hr    6569 white prepupae 24hr    7394 pupae 2d postWPP    4694 pupae 3d postWPP    2346 pupae 4d postWPP    1734 adult male 01day    1803 adult male 05day    2066 adult male 30day    2144 adult female 01day    796 adult female 05day    309 adult female 30day    331 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0035246 expression level Developmental Stage   Expression Level embryo 00-02hr    34 embryo 02-04hr    124 embryo 04-06hr    166 embryo 06-08hr    1292 embryo 08-10hr    2942 embryo 10-12hr    5632 embryo 12-14hr    5654 embryo 14-16hr    5234 embryo 16-18hr    4681 embryo 18-20hr    3528 embryo 20-22hr    2333 embryo 22-24hr    2569 larva L1    2712 larva L2    1253 larva L3 12hr old    576 larva L3 puffstage 1-2    1085 larva L3 puffstage 3-6    2366 larva L3 puffstage 7-9    3357 white prepupae new    3617 white prepupae 12hr    6569 white prepupae 24hr    7394 pupae 2d postWPP    4694 pupae 3d postWPP    2346 pupae 4d postWPP    1734 adult male 01day    1803 adult male 05day    2066 adult male 30day    2144 adult female 01day    796 adult female 05day    309 adult female 30day    331 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    34 embryo 02-04hr  124 embryo 04-06hr  (166) embryo 06-08hr  (1292) embryo 08-10hr  (2942) embryo 10-12hr  (5632) embryo 12-14hr  (5654) embryo 14-16hr  (5234) embryo 16-18hr  (4681) embryo 18-20hr  (3528) embryo 20-22hr  (2333) embryo 22-24hr  (2569) larva L1  (2712) larva L2  (1253) larva L3 12hr old  (576) larva L3 puffstage 1-2  (1085) larva L3 puffstage 3-6  (2366) larva L3 puffstage 7-9  (3357) white prepupae new  (3617) white prepupae 12hr  (6569) white prepupae 24hr  (7394) pupae 2d postWPP  (4694) pupae 3d postWPP  (2346) pupae 4d postWPP  (1734) adult male 01day  (1803) adult male 05day  (2066) adult male 30day  (2144) adult female 01day  (796) adult female 05day  (309) adult female 30day  (331) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    34 embryo 02-04hr    124 embryo 04-06hr    166 embryo 06-08hr    1292 embryo 08-10hr  (2942) embryo 10-12hr  (5632) embryo 12-14hr  (5654) embryo 14-16hr  (5234) embryo 16-18hr  (4681) embryo 18-20hr  (3528) embryo 20-22hr  2333 embryo 22-24hr  (2569) larva L1  (2712) larva L2    1253 larva L3 12hr old    576 larva L3 puffstage 1-2    1085 larva L3 puffstage 3-6  2366 larva L3 puffstage 7-9  (3357) white prepupae new  (3617) white prepupae 12hr  (6569) white prepupae 24hr  (7394) pupae 2d postWPP  (4694) pupae 3d postWPP  2346 pupae 4d postWPP  1734 adult male 01day  1803 adult male 05day  2066 adult male 30day  2144 adult female 01day    796 adult female 05day    309 adult female 30day    331 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    34 embryo 02-04hr    124 embryo 04-06hr    166 embryo 06-08hr    1292 embryo 08-10hr    2942 embryo 10-12hr    5632 embryo 12-14hr    5654 embryo 14-16hr    5234 embryo 16-18hr    4681 embryo 18-20hr    3528 embryo 20-22hr    2333 embryo 22-24hr    2569 larva L1    2712 larva L2    1253 larva L3 12hr old    576 larva L3 puffstage 1-2    1085 larva L3 puffstage 3-6    2366 larva L3 puffstage 7-9    3357 white prepupae new    3617 white prepupae 12hr    6569 white prepupae 24hr    7394 pupae 2d postWPP    4694 pupae 3d postWPP    2346 pupae 4d postWPP    1734 adult male 01day    1803 adult male 05day    2066 adult male 30day    2144 adult female 01day    796 adult female 05day    309 adult female 30day    331 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    34 embryo 02-04hr    124 embryo 04-06hr    166 embryo 06-08hr    1292 embryo 08-10hr    2942 embryo 10-12hr    5632 embryo 12-14hr    5654 embryo 14-16hr    5234 embryo 16-18hr    4681 embryo 18-20hr    3528 embryo 20-22hr    2333 embryo 22-24hr    2569 larva L1    2712 larva L2    1253 larva L3 12hr old    576 larva L3 puffstage 1-2    1085 larva L3 puffstage 3-6    2366 larva L3 puffstage 7-9    3357 white prepupae new    3617 white prepupae 12hr    6569 white prepupae 24hr    7394 pupae 2d postWPP    4694 pupae 3d postWPP    2346 pupae 4d postWPP    1734 adult male 01day    1803 adult male 05day    2066 adult male 30day    2144 adult female 01day    796 adult female 05day    309 adult female 30day    331 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0035246    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0035246 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0035246 expression level Tissue   Expression Level Larval Central Nervous System    1769.375 Larval Midgut    2.9 Larval Hindgut    0.9 Larval Malpighian Tubules    1.1 Larval Fat Body    2.5 Larval Salivary Gland    1.6 Larval Trachea no informative data Larval Carcass no informative data Adult Head    862.8 Adult Eye    2147.125 Adult Brain    1846.8 Adult Thoracic-Abdominal Ganglion    2105.3 Adult Crop    4.6 Adult Midgut    5.1 Adult Hindgut    3.3 Adult Malpighian Tubules    0.8 Adult Fat Body    2.2 Adult Salivary Gland    4.9 Adult Heart    7.1 Adult VirginFemale Spermatheca    0.6 Adult InseminatedFemale Spermatheca    0.6 Adult Ovary    0.5 Adult Testis    27.9 Adult Male Accessory Gland    2.8 Adult Carcass    41.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (1769.375) Larval Midgut    2.9 Larval Hindgut    0.9 Larval Malpighian Tubules    1.1 Larval Fat Body    2.5 Larval Salivary Gland    1.6 Larval Trachea no informative data Larval Carcass no informative data Adult Head  (862.8) Adult Eye  (2147.125) Adult Brain  (1846.8) Adult Thoracic-Abdominal Ganglion  (2105.3) Adult Crop    4.6 Adult Midgut    5.1 Adult Hindgut    3.3 Adult Malpighian Tubules    0.8 Adult Fat Body    2.2 Adult Salivary Gland    4.9 Adult Heart    7.1 Adult VirginFemale Spermatheca    0.6 Adult InseminatedFemale Spermatheca    0.6 Adult Ovary    0.5 Adult Testis    27.9 Adult Male Accessory Gland    2.8 Adult Carcass    41.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (1769.375) Larval Midgut    2.9 Larval Hindgut    0.9 Larval Malpighian Tubules    1.1 Larval Fat Body    2.5 Larval Salivary Gland    1.6 Larval Trachea no informative data Larval Carcass no informative data Adult Head    862.8 Adult Eye  (2147.125) Adult Brain  (1846.8) Adult Thoracic-Abdominal Ganglion  (2105.3) Adult Crop    4.6 Adult Midgut    5.1 Adult Hindgut    3.3 Adult Malpighian Tubules    0.8 Adult Fat Body    2.2 Adult Salivary Gland    4.9 Adult Heart    7.1 Adult VirginFemale Spermatheca    0.6 Adult InseminatedFemale Spermatheca    0.6 Adult Ovary    0.5 Adult Testis    27.9 Adult Male Accessory Gland    2.8 Adult Carcass    41.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    1769.375 Larval Midgut    2.9 Larval Hindgut    0.9 Larval Malpighian Tubules    1.1 Larval Fat Body    2.5 Larval Salivary Gland    1.6 Larval Trachea no informative data Larval Carcass no informative data Adult Head    862.8 Adult Eye    2147.125 Adult Brain    1846.8 Adult Thoracic-Abdominal Ganglion    2105.3 Adult Crop    4.6 Adult Midgut    5.1 Adult Hindgut    3.3 Adult Malpighian Tubules    0.8 Adult Fat Body    2.2 Adult Salivary Gland    4.9 Adult Heart    7.1 Adult VirginFemale Spermatheca    0.6 Adult InseminatedFemale Spermatheca    0.6 Adult Ovary    0.5 Adult Testis    27.9 Adult Male Accessory Gland    2.8 Adult Carcass    41.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0035246 expression level Tissue   Expression Level Larval Central Nervous System    1769.375 Larval Midgut    2.9 Larval Hindgut    0.9 Larval Malpighian Tubules    1.1 Larval Fat Body    2.5 Larval Salivary Gland    1.6 Larval Trachea no informative data Larval Carcass no informative data Adult Head    862.8 Adult Eye    2147.125 Adult Brain    1846.8 Adult Thoracic-Abdominal Ganglion    2105.3 Adult Crop    4.6 Adult Midgut    5.1 Adult Hindgut    3.3 Adult Malpighian Tubules    0.8 Adult Fat Body    2.2 Adult Salivary Gland    4.9 Adult Heart    7.1 Adult VirginFemale Spermatheca    0.6 Adult InseminatedFemale Spermatheca    0.6 Adult Ovary    0.5 Adult Testis    27.9 Adult Male Accessory Gland    2.8 Adult Carcass    41.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (1769.375) Larval Midgut    2.9 Larval Hindgut    0.9 Larval Malpighian Tubules    1.1 Larval Fat Body    2.5 Larval Salivary Gland    1.6 Larval Trachea no informative data Larval Carcass no informative data Adult Head  (862.8) Adult Eye  (2147.125) Adult Brain  (1846.8) Adult Thoracic-Abdominal Ganglion  (2105.3) Adult Crop    4.6 Adult Midgut    5.1 Adult Hindgut    3.3 Adult Malpighian Tubules    0.8 Adult Fat Body    2.2 Adult Salivary Gland    4.9 Adult Heart    7.1 Adult VirginFemale Spermatheca    0.6 Adult InseminatedFemale Spermatheca    0.6 Adult Ovary    0.5 Adult Testis    27.9 Adult Male Accessory Gland    2.8 Adult Carcass    41.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (1769.375) Larval Midgut    2.9 Larval Hindgut    0.9 Larval Malpighian Tubules    1.1 Larval Fat Body    2.5 Larval Salivary Gland    1.6 Larval Trachea no informative data Larval Carcass no informative data Adult Head    862.8 Adult Eye  (2147.125) Adult Brain  (1846.8) Adult Thoracic-Abdominal Ganglion  (2105.3) Adult Crop    4.6 Adult Midgut    5.1 Adult Hindgut    3.3 Adult Malpighian Tubules    0.8 Adult Fat Body    2.2 Adult Salivary Gland    4.9 Adult Heart    7.1 Adult VirginFemale Spermatheca    0.6 Adult InseminatedFemale Spermatheca    0.6 Adult Ovary    0.5 Adult Testis    27.9 Adult Male Accessory Gland    2.8 Adult Carcass    41.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    1769.375 Larval Midgut    2.9 Larval Hindgut    0.9 Larval Malpighian Tubules    1.1 Larval Fat Body    2.5 Larval Salivary Gland    1.6 Larval Trachea no informative data Larval Carcass no informative data Adult Head    862.8 Adult Eye    2147.125 Adult Brain    1846.8 Adult Thoracic-Abdominal Ganglion    2105.3 Adult Crop    4.6 Adult Midgut    5.1 Adult Hindgut    3.3 Adult Malpighian Tubules    0.8 Adult Fat Body    2.2 Adult Salivary Gland    4.9 Adult Heart    7.1 Adult VirginFemale Spermatheca    0.6 Adult InseminatedFemale Spermatheca    0.6 Adult Ovary    0.5 Adult Testis    27.9 Adult Male Accessory Gland    2.8 Adult Carcass    41.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea no informative data Larval Carcass no informative data Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    862.8   NA  Eye    2147.125   NA  Brain    1846.8   1769.375  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    2105.3   NA  Crop    4.6   2.9  Midgut    5.1   0.9  Hindgut    3.3   1.1  Malpighian Tubules    0.8   2.5  Fat Body    2.2   1.6  Salivary Gland    4.9   NA  Heart    7.1   no informative data  Trachea    NA   NA  VirginFemale Spermatheca    0.6   NA  InseminatedFemale Spermatheca    0.6   NA  Ovary    0.5   NA  Testis    27.9   NA  Male Accessory Gland    2.8   no informative data  Carcass    41.6 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_29
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035246 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13928-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG13928 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG13928EY11986 CG13928T190-32-2 Sterility Allele fertile CG13928EY11986 Phenotype manifest in Allele
Classical Alleles ( 8 )
For All Classical Alleles Show
Allele of CG13928 Class Mutagen Stocks Known lesion CG13928DG12302 1 -- CG13928EY11986 P-element activity 1 -- CG13928KG09086b P-element activity 1 -- CG13928MI02090 1 -- CG139286-63 Delta2-3 0 Yes CG13928EP304 P-element activity 0 Yes CG13928EY05348 P-element activity 0 -- CG13928T190-32-2 P-element activity 0 Yes
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG13928 Class Mutagen Stocks Known lesion CG13928GD8171 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG13928JF03061 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG13928KK109803 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8171} NA P{KK109803} NA P{TRiP.JF03061} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}CG13928EP304 NA P{EPgy2}CG13928EY05348 NA P{EPgy2}CG13928EY11986 NA miscellaneous insertions Mi{MIC}GCMI02090 NA P{SUPor-P}CG13928KG09086b NA P{T1}CG13928T190-32-2 NA P{wHy}GCDG12302 NA insertion of enhancer trap P{luc-sniffer}CG139286-63 No
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
zinc ion binding inferred from electronic annotation with InterPro:IPR001965 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG13928 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 63729 DroID - A comprehensive database of gene and protein interactions. • FBgn0035246 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38195
Orthologs
Genome-wide drosophilid orthologs	Dana\GF24020 Dere\GG14582 Dgri\GH14870 Dmoj\GI12842 Dper\GL20733 Dpse\GA12633 Dsec\GM14196 Dsim\GD13459 Dvir\GJ12987 Dwil\GK23669 Dyak\GE20942
Curated drosophilid orthologs	Dpse\GA12633
Linkouts	OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0238229 FBgn0225631 FBgn0200221 FBgn0185171 FBgn0169122 FBgn0245441 FBgn0072679 FBgn0158328 FBgn0135599 FBgn0122345 FBgn0106839 FBgn0101014 BGIBMGA000702 ACYPI55862 ACYPI55854 ACYPI52025 ACYPI49249 ACYPI48260 ACYPI46627 ACYPI45624 ACYPI42223 ACYPI39597 ACYPI39387 ACYPI37117 ACYPI33785 ACYPI33415 ACYPI32923 ACYPI32701 ACYPI30877 ACYPI29271 ACYPI28817 ACYPI28703 ACYPI25895 ACYPI24410 ACYPI23247 ACYPI005562
Stocks & Reagents
Stocks Listed in FlyBase ( 8 )
Bloomington	28646 y1 v1; P{TRiP.JF03061}attP2 34462 y1 w*; Mi{MIC}GCMI02090 CG13928MI02090 20589 y1 w67c23; P{wHy}GCDG12302 CG13928DG12302 20334 y1 w67c23; P{EPgy2}CG13928EY11986 GCEY11986
Kyoto	111686 yd2 w1118 P{ey-FLP.N}2 P{GMR-lacZ.C(38.1)}TPN1; P{SUPor-P}KG09086a P{SUPor-P}CG13928KG09086b P{neoFRT}80B/TM6B, P{Car20y}TPN1, Tb1
VDRC	v105306 P{KK109803}VIE-260B v51777 w1118; P{GD8171}v51777 v51776 w1118; P{GD8171}v51776/CyO
Genomic Clones ( 2 )
	BACR14O14 BACR17K18 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 119 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH11843
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH11416 GH12318 GH14044 GH25280 LP07234 LP19547 RE16536 RE29588 RE69611 RH01867 RH03320 RH03368 RH09096 RH09924 RH09965 RH10172 RH12746 RH14786 RH16828 RH20962 RH21027 RH23748 RH25596 RH26383 RH26396 RH27921 RH28956 RH30212 RH30633 RH30647 RH30735 RH32677 RH33228 RH33753 RH33987 RH35866 RH35927 RH36901 RH37091 RH37116 RH39821 RH43668 RH44589 RH45002 RH45796 RH50301 RH51113 RH55929 RH56144 RH58065 RH60002 RH60958 RH63472 RH64028 RH67018 RH70345 RH71775
Other clones	855 1696 8965 12084 12851 12901 17236 28750 34691 62197 79879 97202 104832 156419 156608 163201 163664 190641 193802 214321.10 214375.32 214507.22 214507.23 214577.14 274395 281337 bs62g07 CK01.41B.B4 CK01.80A.G6 CK01.106B.H2 CK01.108A.D8 EK035538 EK082048 EK083903 EK092148 EK101603 EK108214 EK112815 EK114411 EK114547 EK121749 EK122938 EK137513 EK173103 EK188044 EK212348 EK219430 EK259330 EK259512 EK266948 EK268448 EK292862 EP05948 EP09263 EP15837 EP17845 RP001004959 RP001045791 RP001050451 RP001050718 RP001054631
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0035246 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38195
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	Shows particularly robust cycling of transcription in adult heads, as assessed by expression analysis using high density oligonucleotide arrays with probe generated during three 12-point time course experiments over the course of 6 days. (Claridge-Chang et al., 2001)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_139378 RefSeq (Proteins) • NP_647635 DDBJ / EMBL / GenBank • AAF47528 AAM11335 AI134389 AQ025059 AW940428 AY095007 BZ665653 BZ665654 CL844485 Entrez Gene - A searchable database of RefSeq genes. • 38195 UniProtKB/TrEMBL • Q9W0C3
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, PHD-type (IPR001965) Zinc finger, PHD-type, conserved site (IPR019786) Zinc finger, RING/FYVE/PHD-type (IPR013083)
Linkouts
	BioGRID - A database of protein and genetic interactions • 63729 DroID - A comprehensive database of gene and protein interactions. • FBgn0035246 DRSC - Results from RNAi screens. • FBgn0035246 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035246 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13928-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0035246 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38195 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38195 modMine - Data generated by the modENCODE project. • FBgn0035246 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0238229 FBgn0225631 FBgn0200221 FBgn0185171 FBgn0169122 FBgn0245441 FBgn0072679 FBgn0158328 FBgn0135599 FBgn0122345 FBgn0106839 FBgn0101014 BGIBMGA000702 ACYPI55862 ACYPI55854 ACYPI52025 ACYPI49249 ACYPI48260 ACYPI46627 ACYPI45624 ACYPI42223 ACYPI39597 ACYPI39387 ACYPI37117 ACYPI33785 ACYPI33415 ACYPI32923 ACYPI32701 ACYPI30877 ACYPI29271 ACYPI28817 ACYPI28703 ACYPI25895 ACYPI24410 ACYPI23247 ACYPI005562
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG13928 (Bienz, 2006, Haynes et al., 2006, Toledano-Katchalski et al., 2007, Keleman et al., 2009.8.5, Perkins et al., 2009, Edwards et al., 2009)
Name Synonym
Secondary FlyBase IDs
References ( 18 )
Research paper	Edwards et al., 2009, Genome Biol. 10(7): R76 A transcriptional network associated with natural variation in Drosophila aggressive behavior. [FBrf0208659] Toledano-Katchalski et al., 2007, Development 134(19): 3473--3481 Post-transcriptional repression of the Drosophila midkine and pleiotrophin homolog miple by HOW is essential for correct mesoderm spreading. [FBrf0201671] Stempfl et al., 2002, Genetics 160(2): 571--593 Identification of circadian-clock-regulated enhancers and genes of Drosophila melanogaster by transposon mobilization and luciferase reporting of cyclical gene expression. [FBrf0144900] Claridge-Chang et al., 2001, Neuron 32(4): 657--671 Circadian regulation of gene expression systems in the Drosophila head. [FBrf0141689]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Haynes et al., 2006, Curr. Biol. 16(22): Table S1. Lines generated by microinjection or P mobilization. [FBrf0200400] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Review	Bienz, 2006, Trends Biochem. Sci. 31(1): 35--40 [FBrf0199098]
Personal communication to FlyBase	Bellen, 2011.2.28, set926.xml set926.xml [FBrf0213112] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Perkins et al., 2009, Update to TRiP stock collection. Update to TRiP stock collection. [FBrf0208864] Myrick et al., 2008.12.2, Alignment of P{wHy} collection to current genome. Alignment of P{wHy} collection to current genome. [FBrf0206273] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
FlyBase analysis	FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]