Gene Dmel\CG13800

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General Information

Symbol

Dmel\CG13800

Species

D. melanogaster

Name

Annotation symbol

CG13800

Feature type

protein_coding_gene

FlyBase ID

FBgn0035338

Gene Model Status

Current

Stock availability

6 publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

62E1-62E1

Sequence location

3L:2,379,062..2,408,752 [+]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG13800 (FBgn0035338). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 6 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval Malpighian tubules. Comments on Affy2 ProbeSet: ProbeSet 1630766_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of CG13800. Gene sequence location is 3L:2379062..2408752.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

62E1-62E1

Limits computationally determined from genome sequence between P{PZ}sls^rL182 and P{PZ}Spn⁰⁶⁹¹¹

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG13800 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.44

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG13800-RA

FBtr0072891

NM_139462

6902

1933

CG13800-RB

FBtr0303461

NM_001202097

6580

1872

CG13800-RC

FBtr0303462

NM_001202098

6306

1872

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG13800-PA

FBpp0072769

213.0

1933

5.00

NP_647719

AAF47642

CG13800-PB

FBpp0292513

205.8

1872

5.04

NP_001189026

ADV37463

CG13800-PC

FBpp0292514

205.8

1872

5.04

NP_001189027

ADV37464

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q9W018

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

day 5 of adulthood & male -- day 7 of adulthood & male

spermatozoon

(Wasbrough et al., 2010)

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval Malpighian tubules.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		15.4
Larval Midgut		21.7
Larval Hindgut		17.1
Larval Malpighian Tubules		139.8
Larval Fat Body		12.7
Larval Salivary Gland		5
Larval Trachea		84.225
Larval Carcass		24.35
Adult Head		46.1
Adult Eye		54.2
Adult Brain		21.6
Adult Thoracic-Abdominal Ganglion		22.4
Adult Crop		17.7
Adult Midgut		32.8
Adult Hindgut		21.6
Adult Malpighian Tubules		16.9
Adult Fat Body		9.4
Adult Salivary Gland		63.6
Adult Heart		7.05
Adult VirginFemale Spermatheca		5.7
Adult InseminatedFemale Spermatheca		10.8
Adult Ovary		17.1
Adult Testis		10.4
Adult Male Accessory Gland		52.7
Adult Carcass		17.8
Expression Level Scale		None Low Moderate

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		15.4
Larval Midgut		21.7
Larval Hindgut		17.1
Larval Malpighian Tubules		139.8
Larval Fat Body		12.7
Larval Salivary Gland		5
Larval Trachea		84.225
Larval Carcass		24.35
Adult Head		46.1
Adult Eye		54.2
Adult Brain		21.6
Adult Thoracic-Abdominal Ganglion		22.4
Adult Crop		17.7
Adult Midgut		32.8
Adult Hindgut		21.6
Adult Malpighian Tubules		16.9
Adult Fat Body		9.4
Adult Salivary Gland		63.6
Adult Heart		7.05
Adult VirginFemale Spermatheca		5.7
Adult InseminatedFemale Spermatheca		10.8
Adult Ovary		17.1
Adult Testis		10.4
Adult Male Accessory Gland		52.7
Adult Carcass		17.8
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		15.4
Larval Midgut		21.7
Larval Hindgut		17.1
Larval Malpighian Tubules		139.8
Larval Fat Body		12.7
Larval Salivary Gland		5
Larval Trachea		84.225
Larval Carcass		24.35
Adult Head		46.1
Adult Eye		54.2
Adult Brain		21.6
Adult Thoracic-Abdominal Ganglion		22.4
Adult Crop		17.7
Adult Midgut		32.8
Adult Hindgut		21.6
Adult Malpighian Tubules		16.9
Adult Fat Body		9.4
Adult Salivary Gland		63.6
Adult Heart		7.05
Adult VirginFemale Spermatheca		5.7
Adult InseminatedFemale Spermatheca		10.8
Adult Ovary		17.1
Adult Testis		10.4
Adult Male Accessory Gland		52.7
Adult Carcass		17.8
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		15.4
Larval Midgut		21.7
Larval Hindgut		17.1
Larval Malpighian Tubules		139.8
Larval Fat Body		12.7
Larval Salivary Gland		5
Larval Trachea		84.225
Larval Carcass		24.35
Adult Head		46.1
Adult Eye		54.2
Adult Brain		21.6
Adult Thoracic-Abdominal Ganglion		22.4
Adult Crop		17.7
Adult Midgut		32.8
Adult Hindgut		21.6
Adult Malpighian Tubules		16.9
Adult Fat Body		9.4
Adult Salivary Gland		63.6
Adult Heart		7.05
Adult VirginFemale Spermatheca		5.7
Adult InseminatedFemale Spermatheca		10.8
Adult Ovary		17.1
Adult Testis		10.4
Adult Male Accessory Gland		52.7
Adult Carcass		17.8
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		15.4
Larval Midgut		21.7
Larval Hindgut		17.1
Larval Malpighian Tubules		139.8
Larval Fat Body		12.7
Larval Salivary Gland		5
Larval Trachea		84.225
Larval Carcass		24.35
Adult Head		46.1
Adult Eye		54.2
Adult Brain		21.6
Adult Thoracic-Abdominal Ganglion		22.4
Adult Crop		17.7
Adult Midgut		32.8
Adult Hindgut		21.6
Adult Malpighian Tubules		16.9
Adult Fat Body		9.4
Adult Salivary Gland		63.6
Adult Heart		7.05
Adult VirginFemale Spermatheca		5.7
Adult InseminatedFemale Spermatheca		10.8
Adult Ovary		17.1
Adult Testis		10.4
Adult Male Accessory Gland		52.7
Adult Carcass		17.8
Expression Level Scale		None Low Moderate

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		15.4
Larval Midgut		21.7
Larval Hindgut		17.1
Larval Malpighian Tubules		139.8
Larval Fat Body		12.7
Larval Salivary Gland		5
Larval Trachea		84.225
Larval Carcass		24.35
Adult Head		46.1
Adult Eye		54.2
Adult Brain		21.6
Adult Thoracic-Abdominal Ganglion		22.4
Adult Crop		17.7
Adult Midgut		32.8
Adult Hindgut		21.6
Adult Malpighian Tubules		16.9
Adult Fat Body		9.4
Adult Salivary Gland		63.6
Adult Heart		7.05
Adult VirginFemale Spermatheca		5.7
Adult InseminatedFemale Spermatheca		10.8
Adult Ovary		17.1
Adult Testis		10.4
Adult Male Accessory Gland		52.7
Adult Carcass		17.8
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		15.4
Larval Midgut		21.7
Larval Hindgut		17.1
Larval Malpighian Tubules		139.8
Larval Fat Body		12.7
Larval Salivary Gland		5
Larval Trachea		84.225
Larval Carcass		24.35
Adult Head		46.1
Adult Eye		54.2
Adult Brain		21.6
Adult Thoracic-Abdominal Ganglion		22.4
Adult Crop		17.7
Adult Midgut		32.8
Adult Hindgut		21.6
Adult Malpighian Tubules		16.9
Adult Fat Body		9.4
Adult Salivary Gland		63.6
Adult Heart		7.05
Adult VirginFemale Spermatheca		5.7
Adult InseminatedFemale Spermatheca		10.8
Adult Ovary		17.1
Adult Testis		10.4
Adult Male Accessory Gland		52.7
Adult Carcass		17.8
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		15.4
Larval Midgut		21.7
Larval Hindgut		17.1
Larval Malpighian Tubules		139.8
Larval Fat Body		12.7
Larval Salivary Gland		5
Larval Trachea		84.225
Larval Carcass		24.35
Adult Head		46.1
Adult Eye		54.2
Adult Brain		21.6
Adult Thoracic-Abdominal Ganglion		22.4
Adult Crop		17.7
Adult Midgut		32.8
Adult Hindgut		21.6
Adult Malpighian Tubules		16.9
Adult Fat Body		9.4
Adult Salivary Gland		63.6
Adult Heart		7.05
Adult VirginFemale Spermatheca		5.7
Adult InseminatedFemale Spermatheca		10.8
Adult Ovary		17.1
Adult Testis		10.4
Adult Male Accessory Gland		52.7
Adult Carcass		17.8
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	46.1
NA	Eye	54.2
NA	Brain	21.6
no informative data	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	no informative data
NA	Crop	no informative data
no informative data	Midgut	no informative data
no informative data	Hindgut	no informative data
139.8	Malpighian Tubules	no informative data
no informative data	Fat Body	9.4
5	Salivary Gland	no informative data
NA	Heart	7.05
84.225	Trachea	NA
NA	VirginFemale Spermatheca	5.7
NA	InseminatedFemale Spermatheca	no informative data
NA	Ovary	17.1
NA	Testis	no informative data
NA	Male Accessory Gland	52.7
no informative data	Carcass	no informative data

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		4
central nervous system, pupae P8		8
head, virgin 1-day female		13
head, virgin 4-day female		12
head, virgin 20-day female		8
head, mated 1-day female		15
head, mated 4-day female		11
head, mated 20-day female		8
head, mated 1-day male		22
head, mated 4-day male		19
head, mated 20-day male		17
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		6
digestive system, 1-day adult		5
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		1
fat body, white prepupae		3
fat body, pupae P8		5
carcass, larvae L3 wandering		13
carcass, 1-day adult		10
carcass, 4-day adult		8
carcass, 20-day adult		6
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		2
accessory gland, mated 4-day male		5
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		4
central nervous system, pupae P8		8
head, virgin 1-day female		13
head, virgin 4-day female		12
head, virgin 20-day female		8
head, mated 1-day female		15
head, mated 4-day female		11
head, mated 20-day female		8
head, mated 1-day male		22
head, mated 4-day male		19
head, mated 20-day male		17
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		6
digestive system, 1-day adult		5
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		1
fat body, white prepupae		3
fat body, pupae P8		5
carcass, larvae L3 wandering		13
carcass, 1-day adult		10
carcass, 4-day adult		8
carcass, 20-day adult		6
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		2
accessory gland, mated 4-day male		5
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		4
central nervous system, pupae P8		8
head, virgin 1-day female		13
head, virgin 4-day female		12
head, virgin 20-day female		8
head, mated 1-day female		15
head, mated 4-day female		11
head, mated 20-day female		8
head, mated 1-day male		22
head, mated 4-day male		19
head, mated 20-day male		17
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		6
digestive system, 1-day adult		5
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		1
fat body, white prepupae		3
fat body, pupae P8		5
carcass, larvae L3 wandering		13
carcass, 1-day adult		10
carcass, 4-day adult		8
carcass, 20-day adult		6
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		2
accessory gland, mated 4-day male		5
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		4
central nervous system, pupae P8		8
head, virgin 1-day female		13
head, virgin 4-day female		12
head, virgin 20-day female		8
head, mated 1-day female		15
head, mated 4-day female		11
head, mated 20-day female		8
head, mated 1-day male		22
head, mated 4-day male		19
head, mated 20-day male		17
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		6
digestive system, 1-day adult		5
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		1
fat body, white prepupae		3
fat body, pupae P8		5
carcass, larvae L3 wandering		13
carcass, 1-day adult		10
carcass, 4-day adult		8
carcass, 20-day adult		6
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		2
accessory gland, mated 4-day male		5
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		4
central nervous system, pupae P8		8
head, virgin 1-day female		13
head, virgin 4-day female		12
head, virgin 20-day female		8
head, mated 1-day female		15
head, mated 4-day female		11
head, mated 20-day female		8
head, mated 1-day male		22
head, mated 4-day male		19
head, mated 20-day male		17
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		6
digestive system, 1-day adult		5
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		1
fat body, white prepupae		3
fat body, pupae P8		5
carcass, larvae L3 wandering		13
carcass, 1-day adult		10
carcass, 4-day adult		8
carcass, 20-day adult		6
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		2
accessory gland, mated 4-day male		5
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		4
central nervous system, pupae P8		8
head, virgin 1-day female		13
head, virgin 4-day female		12
head, virgin 20-day female		8
head, mated 1-day female		15
head, mated 4-day female		11
head, mated 20-day female		8
head, mated 1-day male		22
head, mated 4-day male		19
head, mated 20-day male		17
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		6
digestive system, 1-day adult		5
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		1
fat body, white prepupae		3
fat body, pupae P8		5
carcass, larvae L3 wandering		13
carcass, 1-day adult		10
carcass, 4-day adult		8
carcass, 20-day adult		6
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		2
accessory gland, mated 4-day male		5
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		4
central nervous system, pupae P8		8
head, virgin 1-day female		13
head, virgin 4-day female		12
head, virgin 20-day female		8
head, mated 1-day female		15
head, mated 4-day female		11
head, mated 20-day female		8
head, mated 1-day male		22
head, mated 4-day male		19
head, mated 20-day male		17
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		6
digestive system, 1-day adult		5
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		1
fat body, white prepupae		3
fat body, pupae P8		5
carcass, larvae L3 wandering		13
carcass, 1-day adult		10
carcass, 4-day adult		8
carcass, 20-day adult		6
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		2
accessory gland, mated 4-day male		5
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		7
central nervous system, larvae L3		4
central nervous system, pupae P8		8
head, virgin 1-day female		13
head, virgin 4-day female		12
head, virgin 20-day female		8
head, mated 1-day female		15
head, mated 4-day female		11
head, mated 20-day female		8
head, mated 1-day male		22
head, mated 4-day male		19
head, mated 20-day male		17
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		6
digestive system, 1-day adult		5
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		1
fat body, white prepupae		3
fat body, pupae P8		5
carcass, larvae L3 wandering		13
carcass, 1-day adult		10
carcass, 4-day adult		8
carcass, 20-day adult		6
ovary, virgin 4-day female		4
ovary, mated 4-day female		4
testis, mated 4-day male		2
accessory gland, mated 4-day male		5
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the pupal period.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		4
embryo 02-04hr		9
embryo 04-06hr		18
embryo 06-08hr		23
embryo 08-10hr		19
embryo 10-12hr		11
embryo 12-14hr		18
embryo 14-16hr		24
embryo 16-18hr		22
embryo 18-20hr		24
embryo 20-22hr		21
embryo 22-24hr		23
larva L1		11
larva L2		9
larva L3 12hr old		8
larva L3 puffstage 1-2		3
larva L3 puffstage 3-6		7
larva L3 puffstage 7-9		10
white prepupae new		11
white prepupae 12hr		17
white prepupae 24hr		10
pupae 2d postWPP		20
pupae 3d postWPP		12
pupae 4d postWPP		15
adult male 01day		11
adult male 05day		11
adult male 30day		12
adult female 01day		7
adult female 05day		5
adult female 30day		5
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		4
embryo 02-04hr		9
embryo 04-06hr		18
embryo 06-08hr		23
embryo 08-10hr		19
embryo 10-12hr		11
embryo 12-14hr		18
embryo 14-16hr		24
embryo 16-18hr		22
embryo 18-20hr		24
embryo 20-22hr		21
embryo 22-24hr		23
larva L1		11
larva L2		9
larva L3 12hr old		8
larva L3 puffstage 1-2		3
larva L3 puffstage 3-6		7
larva L3 puffstage 7-9		10
white prepupae new		11
white prepupae 12hr		17
white prepupae 24hr		10
pupae 2d postWPP		20
pupae 3d postWPP		12
pupae 4d postWPP		15
adult male 01day		11
adult male 05day		11
adult male 30day		12
adult female 01day		7
adult female 05day		5
adult female 30day		5
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		4
embryo 02-04hr		9
embryo 04-06hr		18
embryo 06-08hr		23
embryo 08-10hr		19
embryo 10-12hr		11
embryo 12-14hr		18
embryo 14-16hr		24
embryo 16-18hr		22
embryo 18-20hr		24
embryo 20-22hr		21
embryo 22-24hr		23
larva L1		11
larva L2		9
larva L3 12hr old		8
larva L3 puffstage 1-2		3
larva L3 puffstage 3-6		7
larva L3 puffstage 7-9		10
white prepupae new		11
white prepupae 12hr		17
white prepupae 24hr		10
pupae 2d postWPP		20
pupae 3d postWPP		12
pupae 4d postWPP		15
adult male 01day		11
adult male 05day		11
adult male 30day		12
adult female 01day		7
adult female 05day		5
adult female 30day		5
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		4
embryo 02-04hr		9
embryo 04-06hr		18
embryo 06-08hr		23
embryo 08-10hr		19
embryo 10-12hr		11
embryo 12-14hr		18
embryo 14-16hr		24
embryo 16-18hr		22
embryo 18-20hr		24
embryo 20-22hr		21
embryo 22-24hr		23
larva L1		11
larva L2		9
larva L3 12hr old		8
larva L3 puffstage 1-2		3
larva L3 puffstage 3-6		7
larva L3 puffstage 7-9		10
white prepupae new		11
white prepupae 12hr		17
white prepupae 24hr		10
pupae 2d postWPP		20
pupae 3d postWPP		12
pupae 4d postWPP		15
adult male 01day		11
adult male 05day		11
adult male 30day		12
adult female 01day		7
adult female 05day		5
adult female 30day		5
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		4
embryo 02-04hr		9
embryo 04-06hr		18
embryo 06-08hr		23
embryo 08-10hr		19
embryo 10-12hr		11
embryo 12-14hr		18
embryo 14-16hr		24
embryo 16-18hr		22
embryo 18-20hr		24
embryo 20-22hr		21
embryo 22-24hr		23
larva L1		11
larva L2		9
larva L3 12hr old		8
larva L3 puffstage 1-2		3
larva L3 puffstage 3-6		7
larva L3 puffstage 7-9		10
white prepupae new		11
white prepupae 12hr		17
white prepupae 24hr		10
pupae 2d postWPP		20
pupae 3d postWPP		12
pupae 4d postWPP		15
adult male 01day		11
adult male 05day		11
adult male 30day		12
adult female 01day		7
adult female 05day		5
adult female 30day		5
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		4
embryo 02-04hr		9
embryo 04-06hr		18
embryo 06-08hr		23
embryo 08-10hr		19
embryo 10-12hr		11
embryo 12-14hr		18
embryo 14-16hr		24
embryo 16-18hr		22
embryo 18-20hr		24
embryo 20-22hr		21
embryo 22-24hr		23
larva L1		11
larva L2		9
larva L3 12hr old		8
larva L3 puffstage 1-2		3
larva L3 puffstage 3-6		7
larva L3 puffstage 7-9		10
white prepupae new		11
white prepupae 12hr		17
white prepupae 24hr		10
pupae 2d postWPP		20
pupae 3d postWPP		12
pupae 4d postWPP		15
adult male 01day		11
adult male 05day		11
adult male 30day		12
adult female 01day		7
adult female 05day		5
adult female 30day		5
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		4
embryo 02-04hr		9
embryo 04-06hr		18
embryo 06-08hr		23
embryo 08-10hr		19
embryo 10-12hr		11
embryo 12-14hr		18
embryo 14-16hr		24
embryo 16-18hr		22
embryo 18-20hr		24
embryo 20-22hr		21
embryo 22-24hr		23
larva L1		11
larva L2		9
larva L3 12hr old		8
larva L3 puffstage 1-2		3
larva L3 puffstage 3-6		7
larva L3 puffstage 7-9		10
white prepupae new		11
white prepupae 12hr		17
white prepupae 24hr		10
pupae 2d postWPP		20
pupae 3d postWPP		12
pupae 4d postWPP		15
adult male 01day		11
adult male 05day		11
adult male 30day		12
adult female 01day		7
adult female 05day		5
adult female 30day		5
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		4
embryo 02-04hr		9
embryo 04-06hr		18
embryo 06-08hr		23
embryo 08-10hr		19
embryo 10-12hr		11
embryo 12-14hr		18
embryo 14-16hr		24
embryo 16-18hr		22
embryo 18-20hr		24
embryo 20-22hr		21
embryo 22-24hr		23
larva L1		11
larva L2		9
larva L3 12hr old		8
larva L3 puffstage 1-2		3
larva L3 puffstage 3-6		7
larva L3 puffstage 7-9		10
white prepupae new		11
white prepupae 12hr		17
white prepupae 24hr		10
pupae 2d postWPP		20
pupae 3d postWPP		12
pupae 4d postWPP		15
adult male 01day		11
adult male 05day		11
adult male 30day		12
adult female 01day		7
adult female 05day		5
adult female 30day		5
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		37
Schneider line 2 Sg4		8
embryonic 1182-4H		31
embryonic GM2		7
embryonic Kc167		4
embryonic S1		13
embryonic S3		1
leg disc CME L1		14
wing disc CME-W2		0
wing disc ML-DmD8		2
wing disc ML-DmD9		2
wing disc ML-DmD16-c3		27
wing disc ML-DmD21		0
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		3
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		16
mixed discs ML-DmD4-c1		2
CNS ML-DmBG1-c1		52
CNS ML-DmBG2-c2		3
tumorous blood cells mbn2		31
ovary fGS/OSS		37
ovary OSC		9
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(37)
Schneider line 2 Sg4		8
embryonic 1182-4H		(31)
embryonic GM2		7
embryonic Kc167		4
embryonic S1		13
embryonic S3		1
leg disc CME L1		14
wing disc CME-W2		0
wing disc ML-DmD8		2
wing disc ML-DmD9		2
wing disc ML-DmD16-c3		(27)
wing disc ML-DmD21		0
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		3
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		16
mixed discs ML-DmD4-c1		2
CNS ML-DmBG1-c1		(52)
CNS ML-DmBG2-c2		3
tumorous blood cells mbn2		(31)
ovary fGS/OSS		(37)
ovary OSC		9
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		37
Schneider line 2 Sg4		8
embryonic 1182-4H		31
embryonic GM2		7
embryonic Kc167		4
embryonic S1		13
embryonic S3		1
leg disc CME L1		14
wing disc CME-W2		0
wing disc ML-DmD8		2
wing disc ML-DmD9		2
wing disc ML-DmD16-c3		27
wing disc ML-DmD21		0
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		3
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		16
mixed discs ML-DmD4-c1		2
CNS ML-DmBG1-c1		52
CNS ML-DmBG2-c2		3
tumorous blood cells mbn2		31
ovary fGS/OSS		37
ovary OSC		9
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		37
Schneider line 2 Sg4		8
embryonic 1182-4H		31
embryonic GM2		7
embryonic Kc167		4
embryonic S1		13
embryonic S3		1
leg disc CME L1		14
wing disc CME-W2		0
wing disc ML-DmD8		2
wing disc ML-DmD9		2
wing disc ML-DmD16-c3		27
wing disc ML-DmD21		0
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		3
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		16
mixed discs ML-DmD4-c1		2
CNS ML-DmBG1-c1		52
CNS ML-DmBG2-c2		3
tumorous blood cells mbn2		31
ovary fGS/OSS		37
ovary OSC		9
ovary OSS		11
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		37
Schneider line 2 Sg4		8
embryonic 1182-4H		31
embryonic GM2		7
embryonic Kc167		4
embryonic S1		13
embryonic S3		1
leg disc CME L1		14
wing disc CME-W2		0
wing disc ML-DmD8		2
wing disc ML-DmD9		2
wing disc ML-DmD16-c3		27
wing disc ML-DmD21		0
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		3
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		16
mixed discs ML-DmD4-c1		2
CNS ML-DmBG1-c1		52
CNS ML-DmBG2-c2		3
tumorous blood cells mbn2		31
ovary fGS/OSS		37
ovary OSC		9
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(37)
Schneider line 2 Sg4		8
embryonic 1182-4H		31
embryonic GM2		7
embryonic Kc167		4
embryonic S1		13
embryonic S3		1
leg disc CME L1		14
wing disc CME-W2		0
wing disc ML-DmD8		2
wing disc ML-DmD9		2
wing disc ML-DmD16-c3		27
wing disc ML-DmD21		0
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		3
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		16
mixed discs ML-DmD4-c1		2
CNS ML-DmBG1-c1		(52)
CNS ML-DmBG2-c2		3
tumorous blood cells mbn2		31
ovary fGS/OSS		(37)
ovary OSC		9
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		37
Schneider line 2 Sg4		8
embryonic 1182-4H		31
embryonic GM2		7
embryonic Kc167		4
embryonic S1		13
embryonic S3		1
leg disc CME L1		14
wing disc CME-W2		0
wing disc ML-DmD8		2
wing disc ML-DmD9		2
wing disc ML-DmD16-c3		27
wing disc ML-DmD21		0
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		3
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		16
mixed discs ML-DmD4-c1		2
CNS ML-DmBG1-c1		52
CNS ML-DmBG2-c2		3
tumorous blood cells mbn2		31
ovary fGS/OSS		37
ovary OSC		9
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		37
Schneider line 2 Sg4		8
embryonic 1182-4H		31
embryonic GM2		7
embryonic Kc167		4
embryonic S1		13
embryonic S3		1
leg disc CME L1		14
wing disc CME-W2		0
wing disc ML-DmD8		2
wing disc ML-DmD9		2
wing disc ML-DmD16-c3		27
wing disc ML-DmD21		0
wing disc ML-DmD32		4
haltere disc ML-DmD17-c3		3
eye-antennal disc ML-DmD11		5
antennal disc ML-DmD20-c5		16
mixed discs ML-DmD4-c1		2
CNS ML-DmBG1-c1		52
CNS ML-DmBG2-c2		3
tumorous blood cells mbn2		31
ovary fGS/OSS		37
ovary OSC		9
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		5
cold shock, 4-day adult		3
heat shock, 4-day adult		6
Cadmium 50 mM 6 hrs, larvae L3		3
Cadmium 50 mM 12 hrs, larvae L3		3
Cadmium 50 mM 48 hrs, 4-day adult		5
Cadmium 100 mM 48 hrs, 4-day adult		6
Copper 0.5 mM 12 hrs, larvae L3		4
Copper 15 mM 48 hrs, 4-day adult		5
Zinc 5 mM 12 hrs, larvae L3		4
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		6
Caffeine 25 mg/ml 48 hrs, 4-day adult		4
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		11
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		2
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		5
cold shock, 4-day adult		3
heat shock, 4-day adult		6
Cadmium 50 mM 6 hrs, larvae L3		3
Cadmium 50 mM 12 hrs, larvae L3		3
Cadmium 50 mM 48 hrs, 4-day adult		5
Cadmium 100 mM 48 hrs, 4-day adult		6
Copper 0.5 mM 12 hrs, larvae L3		4
Copper 15 mM 48 hrs, 4-day adult		5
Zinc 5 mM 12 hrs, larvae L3		4
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		6
Caffeine 25 mg/ml 48 hrs, 4-day adult		4
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		11
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		2
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		5
cold shock, 4-day adult		3
heat shock, 4-day adult		6
Cadmium 50 mM 6 hrs, larvae L3		3
Cadmium 50 mM 12 hrs, larvae L3		3
Cadmium 50 mM 48 hrs, 4-day adult		5
Cadmium 100 mM 48 hrs, 4-day adult		6
Copper 0.5 mM 12 hrs, larvae L3		4
Copper 15 mM 48 hrs, 4-day adult		5
Zinc 5 mM 12 hrs, larvae L3		4
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		6
Caffeine 25 mg/ml 48 hrs, 4-day adult		4
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		11
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		5
cold shock, 4-day adult		3
heat shock, 4-day adult		6
Cadmium 50 mM 6 hrs, larvae L3		3
Cadmium 50 mM 12 hrs, larvae L3		3
Cadmium 50 mM 48 hrs, 4-day adult		5
Cadmium 100 mM 48 hrs, 4-day adult		6
Copper 0.5 mM 12 hrs, larvae L3		4
Copper 15 mM 48 hrs, 4-day adult		5
Zinc 5 mM 12 hrs, larvae L3		4
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		6
Caffeine 25 mg/ml 48 hrs, 4-day adult		4
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		11
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		2
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		5
cold shock, 4-day adult		3
heat shock, 4-day adult		6
Cadmium 50 mM 6 hrs, larvae L3		3
Cadmium 50 mM 12 hrs, larvae L3		3
Cadmium 50 mM 48 hrs, 4-day adult		5
Cadmium 100 mM 48 hrs, 4-day adult		6
Copper 0.5 mM 12 hrs, larvae L3		4
Copper 15 mM 48 hrs, 4-day adult		5
Zinc 5 mM 12 hrs, larvae L3		4
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		6
Caffeine 25 mg/ml 48 hrs, 4-day adult		4
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		11
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		2
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		5
cold shock, 4-day adult		3
heat shock, 4-day adult		6
Cadmium 50 mM 6 hrs, larvae L3		3
Cadmium 50 mM 12 hrs, larvae L3		3
Cadmium 50 mM 48 hrs, 4-day adult		5
Cadmium 100 mM 48 hrs, 4-day adult		6
Copper 0.5 mM 12 hrs, larvae L3		4
Copper 15 mM 48 hrs, 4-day adult		5
Zinc 5 mM 12 hrs, larvae L3		4
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		6
Caffeine 25 mg/ml 48 hrs, 4-day adult		4
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		11
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		2
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		5
cold shock, 4-day adult		3
heat shock, 4-day adult		6
Cadmium 50 mM 6 hrs, larvae L3		3
Cadmium 50 mM 12 hrs, larvae L3		3
Cadmium 50 mM 48 hrs, 4-day adult		5
Cadmium 100 mM 48 hrs, 4-day adult		6
Copper 0.5 mM 12 hrs, larvae L3		4
Copper 15 mM 48 hrs, 4-day adult		5
Zinc 5 mM 12 hrs, larvae L3		4
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		6
Caffeine 25 mg/ml 48 hrs, 4-day adult		4
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		11
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		5
cold shock, 4-day adult		3
heat shock, 4-day adult		6
Cadmium 50 mM 6 hrs, larvae L3		3
Cadmium 50 mM 12 hrs, larvae L3		3
Cadmium 50 mM 48 hrs, 4-day adult		5
Cadmium 100 mM 48 hrs, 4-day adult		6
Copper 0.5 mM 12 hrs, larvae L3		4
Copper 15 mM 48 hrs, 4-day adult		5
Zinc 5 mM 12 hrs, larvae L3		4
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		7
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		6
Caffeine 25 mg/ml 48 hrs, 4-day adult		4
Paraquat 5 mM 48 hrs, 4-day adult		7
Paraquat 10 mM 48 hrs, 4-day adult		11
Rotenone 2 μg 12 hrs, larvae L3		3
Rotenone 8 μg 12 hrs, larvae L3		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010, Graveley et al., 2011)

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0035338

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG13800-RA

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

viable, with Scer\GAL4^pnr-MD237

CG13800^GD8120

Phenotype manifest in

Allele

Classical Alleles ( 5 )

For All Classical Alleles Show

Allele of CG13800	Mutagen	Stocks	Known lesion
CG13800^c00622		1	--
CG13800^G19075	P-element activity	1	--
CG13800^MB05048		1	--
CG13800^MB08137		1	--
CG13800^MI05647		1	--

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG13800	Class	Mutagen	Stocks	Known lesion
CG13800^GD8120		in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD8120}

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

Mi{MIC}CG13800^MI05647

PBac{PB}CG13800^c00622

PBac{y⁺-attP-3B}VK00031

insertion of enhancer trap binary system

Mi{ET1}CG13800^MB05048

Mi{ET1}CG13800^MB08137

insertion of mobile activating element

P{EP}CG13800^G19075

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

protein-protein

Interacting group

Assay

References

CG13800 - CkIIβ

anti tag coimmunoprecipitation, peptide massfingerprinting

(Mintseris et al., 2009.11.23)

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG13800 allele

Gene

References

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0035338

Orthologs

OrthoDB Orthologs (29) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG6960B3

Dipteran inclusive ortholog search

EOG6PVP6K

Insect inclusive ortholog search

EOG6H44ZK

Arthropod inclusive ortholog search

EOG670RZ4

Metazoa inclusive ortholog search

No orthologs identified

Orthologs in Drosophila Species (EOG6960B3)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA12539

Drosophila persimilis

Dper\GL24657

Drosophila willistoni

Dwil\GK12643

Drosophila virilis

Dvir\GJ16081

Drosophila mojavensis

Dmoj\GI12782

Drosophila grimshawi

Dgri\GH15726

Orthologs in non-Drosophila Dipterans (EOG6PVP6K)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL009346

Anopheles gambiae

Malaria mosquito

Agam\AGAP007198

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ003708

Orthologs in non-Dipteran Insects (EOG6H44ZK)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Apis mellifera

Western honey bee

Amel\GB42731

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG025933

Acromyrmex echinatior

Panamanian leafcutter ant

Aech\AECH14928

Atta cephalotes

Leafcutter ant

Acep\ACEP17884

Camponotus floridanus

Florida carpenter ant

Cflo\CFLO12850

Harpegnathos saltator

Jerdons jumping ant

Hsal\HSAL21510

Linepithema humile

Argentine ant

Lhum\LH11914

Pogonomyrmex barbatus

Red harvester ant

Pbar\PB18526

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI000207

Bombyx mori

Silkmoth

Bmor\BGIBMGA011626

Pediculus humanus

Human body louse

Phum\PHUM294490

Tribolium castaneum

Red flour beetle

Tcas\TC003537

Orthologs in non-Insect Arthropods (EOG670RZ4)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Daphnia pulex

Water flea

Dpux\JGI_V11_96224

Ixodes scapularis

Deer tick

Isca\ISCW004161

Orthologs in non-Arthropod Metazoa (None identified)

No non-Arthropod Metazoa orthologies identified

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (10) based on analysis using Dmel annotation version 4.3

Organism

Gene

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA12539

Drosophila willistoni

Dwil\GK12643

Drosophila virilis

Dvir\GJ16081

Drosophila mojavensis

Dmoj\GI12782

Drosophila grimshawi

Dgri\GH15726

Stocks & Reagents

Stocks Listed in FlyBase ( 6 )

Bloomington

24741

w¹¹¹⁸; Mi{ET1}CG13800^MB05048

25368

w¹¹¹⁸; Mi{ET1}CG13800^MB08137

26956

y¹ w^*; P{EP}CG13800^G19075

43020

y¹ w^*; Mi{MIC}CG13800^MI05647

Harvard

PBac{PB}CG13800^c00622

VDRC

v43583

w¹¹¹⁸; P{GD8120}v43583

Genomic Clones ( 2 )

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 30 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

LP01638

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0035338

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

38305

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

RefSeq (Proteins)

•

DDBJ / EMBL / GenBank

•

Entrez Gene - A searchable database of RefSeq genes.

•

38305

UniProtKB/TrEMBL

•

Q9W018

Other Crossreferences

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0035338

DRSC - Results from RNAi screens.

•

FBgn0035338

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0035338

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG13800-RA

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0035338

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

38305

modMine - Data generated by the modENCODE project.

•

FBgn0035338

Synonyms & Secondary IDs ( 1 )

Reported As

Symbol Synonym

CG13800

(Biemar et al., 2006, Manak et al., 2006, Wasbrough et al., 2010)

Name Synonym

Secondary FlyBase IDs

References ( 15 )

Research paper

Biemar et al., 2006, Proc. Natl. Acad. Sci. U.S.A. 103(34): 12763--12768: Comprehensive identification of Drosophila dorsal-ventral patterning genes using a whole-genome tiling array. [FBrf0191950]

Supplementary material

Graveley et al., 2011, Nature 471(7339):: Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980]
The modENCODE Consortium, 2010, Science 330(6012):: DataS14: Gene co-expression clusters. [FBrf0213979]
Wasbrough et al., 2010, J. Proteomics 73(11):: Supplemental Table 1. Mass spectrometry data. [FBrf0213252]
Mummery-Widmer et al., 2009, Nature 458(7241):: Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Manak et al., 2006, Nat. Genet. 38(10):: Supplementary Information [FBrf0208878]

Personal communication to FlyBase

Bellen, 2012.12.17, set1016.xml: set1016.xml [FBrf0220305]
Bellen, 2009.2.6, BDGP_2009_0206.GenExel.xml: BDGP_2009_0206.GenExel.xml [FBrf0206623]
Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project: DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452]
Bellen, 2008.7.15, Set800.xml: Set800.xml [FBrf0205059]
Bellen, 2007.10.30, batch763.xml: batch763.xml [FBrf0200261]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]

FlyBase analysis

FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations.: Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
FlyBase, 1992-, FlyBase curation.: FlyBase curation. [FBrf0105495]