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Gene Dmel\CG16753

General Information
Symbol	Dmel\CG16753	Species	D. melanogaster
Name		Annotation symbol	CG16753
Feature type	protein_coding_gene	FlyBase ID	FBgn0035393
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	63A5-63A5	Sequence location	3L:3,055,079..3,055,842 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG16753 (FBgn0035393). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult Malpighian tubules, larval trachea, adult ovary, adult male accessory gland. Comments on Affy2 ProbeSet: ProbeSet 1627667_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG16753. Gene sequence location is 3L:3055079..3055842.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 63A5-63A5   Limits computationally determined from genome sequence between P{PZ}l(3)0680306803 and P{PZ}kst01318
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG16753 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.45
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG16753-RA FBtr0072990  NM_139507   764   177
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG16753-PA   FBpp0072860   20.6   177   10.93     NP_647764   AAF47708
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014296 AAF47708   AI514657   AI546634   AW943842   AY061509 AAL29057   BG640209   BI234249   BI241420   BI241498   CL525916   CO184750   CO344741   EC255138
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VZV8
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism | ubiquitous   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 7 -- 8   anterior endoderm anlage   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 9 -- 10   anterior endoderm   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) visceral muscle primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval visceral muscle   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult Malpighian tubules, larval trachea, adult ovary, adult male accessory gland. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    182.275 Larval Midgut    30.1 Larval Hindgut    48.6 Larval Malpighian Tubules    22.7 Larval Fat Body    40.8 Larval Salivary Gland    64.6 Larval Trachea    208.9 Larval Carcass    66.05 Adult Head    50.2 Adult Eye    44.325 Adult Brain    69.5 Adult Thoracic-Abdominal Ganglion    66.9 Adult Crop    27.7 Adult Midgut    33 Adult Hindgut    29.1 Adult Malpighian Tubules    162.7 Adult Fat Body    46.2 Adult Salivary Gland    18.5 Adult Heart    50.85 Adult VirginFemale Spermatheca    39.6 Adult InseminatedFemale Spermatheca    69.8 Adult Ovary    233.9 Adult Testis    43 Adult Male Accessory Gland    174 Adult Carcass    45.3 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    182.275 Larval Midgut    30.1 Larval Hindgut    48.6 Larval Malpighian Tubules    22.7 Larval Fat Body    40.8 Larval Salivary Gland    64.6 Larval Trachea    208.9 Larval Carcass    66.05 Adult Head    50.2 Adult Eye    44.325 Adult Brain    69.5 Adult Thoracic-Abdominal Ganglion    66.9 Adult Crop    27.7 Adult Midgut    33 Adult Hindgut    29.1 Adult Malpighian Tubules    162.7 Adult Fat Body    46.2 Adult Salivary Gland    18.5 Adult Heart    50.85 Adult VirginFemale Spermatheca    39.6 Adult InseminatedFemale Spermatheca    69.8 Adult Ovary    233.9 Adult Testis    43 Adult Male Accessory Gland    174 Adult Carcass    45.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    182.275 Larval Midgut    30.1 Larval Hindgut    48.6 Larval Malpighian Tubules    22.7 Larval Fat Body    40.8 Larval Salivary Gland    64.6 Larval Trachea    208.9 Larval Carcass    66.05 Adult Head    50.2 Adult Eye    44.325 Adult Brain    69.5 Adult Thoracic-Abdominal Ganglion    66.9 Adult Crop    27.7 Adult Midgut    33 Adult Hindgut    29.1 Adult Malpighian Tubules    162.7 Adult Fat Body    46.2 Adult Salivary Gland    18.5 Adult Heart    50.85 Adult VirginFemale Spermatheca    39.6 Adult InseminatedFemale Spermatheca    69.8 Adult Ovary    233.9 Adult Testis    43 Adult Male Accessory Gland    174 Adult Carcass    45.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    182.275 Larval Midgut    30.1 Larval Hindgut    48.6 Larval Malpighian Tubules    22.7 Larval Fat Body    40.8 Larval Salivary Gland    64.6 Larval Trachea    208.9 Larval Carcass    66.05 Adult Head    50.2 Adult Eye    44.325 Adult Brain    69.5 Adult Thoracic-Abdominal Ganglion    66.9 Adult Crop    27.7 Adult Midgut    33 Adult Hindgut    29.1 Adult Malpighian Tubules    162.7 Adult Fat Body    46.2 Adult Salivary Gland    18.5 Adult Heart    50.85 Adult VirginFemale Spermatheca    39.6 Adult InseminatedFemale Spermatheca    69.8 Adult Ovary    233.9 Adult Testis    43 Adult Male Accessory Gland    174 Adult Carcass    45.3 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    182.275 Larval Midgut    30.1 Larval Hindgut    48.6 Larval Malpighian Tubules    22.7 Larval Fat Body    40.8 Larval Salivary Gland    64.6 Larval Trachea    208.9 Larval Carcass    66.05 Adult Head    50.2 Adult Eye    44.325 Adult Brain    69.5 Adult Thoracic-Abdominal Ganglion    66.9 Adult Crop    27.7 Adult Midgut    33 Adult Hindgut    29.1 Adult Malpighian Tubules    162.7 Adult Fat Body    46.2 Adult Salivary Gland    18.5 Adult Heart    50.85 Adult VirginFemale Spermatheca    39.6 Adult InseminatedFemale Spermatheca    69.8 Adult Ovary    233.9 Adult Testis    43 Adult Male Accessory Gland    174 Adult Carcass    45.3 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    182.275 Larval Midgut    30.1 Larval Hindgut    48.6 Larval Malpighian Tubules    22.7 Larval Fat Body    40.8 Larval Salivary Gland    64.6 Larval Trachea    208.9 Larval Carcass    66.05 Adult Head    50.2 Adult Eye    44.325 Adult Brain    69.5 Adult Thoracic-Abdominal Ganglion    66.9 Adult Crop    27.7 Adult Midgut    33 Adult Hindgut    29.1 Adult Malpighian Tubules    162.7 Adult Fat Body    46.2 Adult Salivary Gland    18.5 Adult Heart    50.85 Adult VirginFemale Spermatheca    39.6 Adult InseminatedFemale Spermatheca    69.8 Adult Ovary    233.9 Adult Testis    43 Adult Male Accessory Gland    174 Adult Carcass    45.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    182.275 Larval Midgut    30.1 Larval Hindgut    48.6 Larval Malpighian Tubules    22.7 Larval Fat Body    40.8 Larval Salivary Gland    64.6 Larval Trachea    208.9 Larval Carcass    66.05 Adult Head    50.2 Adult Eye    44.325 Adult Brain    69.5 Adult Thoracic-Abdominal Ganglion    66.9 Adult Crop    27.7 Adult Midgut    33 Adult Hindgut    29.1 Adult Malpighian Tubules    162.7 Adult Fat Body    46.2 Adult Salivary Gland    18.5 Adult Heart    50.85 Adult VirginFemale Spermatheca    39.6 Adult InseminatedFemale Spermatheca    69.8 Adult Ovary    233.9 Adult Testis    43 Adult Male Accessory Gland    174 Adult Carcass    45.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    182.275 Larval Midgut    30.1 Larval Hindgut    48.6 Larval Malpighian Tubules    22.7 Larval Fat Body    40.8 Larval Salivary Gland    64.6 Larval Trachea    208.9 Larval Carcass    66.05 Adult Head    50.2 Adult Eye    44.325 Adult Brain    69.5 Adult Thoracic-Abdominal Ganglion    66.9 Adult Crop    27.7 Adult Midgut    33 Adult Hindgut    29.1 Adult Malpighian Tubules    162.7 Adult Fat Body    46.2 Adult Salivary Gland    18.5 Adult Heart    50.85 Adult VirginFemale Spermatheca    39.6 Adult InseminatedFemale Spermatheca    69.8 Adult Ovary    233.9 Adult Testis    43 Adult Male Accessory Gland    174 Adult Carcass    45.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    50.2   NA  Eye    44.325   NA  Brain    69.5   182.275  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    66.9   NA  Crop    27.7   30.1  Midgut    33   48.6  Hindgut    29.1   22.7  Malpighian Tubules    162.7   40.8  Fat Body    46.2   64.6  Salivary Gland    no informative data   NA  Heart    50.85   208.9  Trachea    NA   NA  VirginFemale Spermatheca    39.6   NA  InseminatedFemale Spermatheca    69.8   NA  Ovary    233.9   NA  Testis    43   NA  Male Accessory Gland    174   66.05  Carcass    45.3 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    38 central nervous system, larvae L3    40 central nervous system, pupae P8    12 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    6 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    7 head, mated 4-day male    9 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    6 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8    42 carcass, larvae L3 wandering    34 carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    10 ovary, virgin 4-day female    61 ovary, mated 4-day female    70 testis, mated 4-day male    51 accessory gland, mated 4-day male    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (38) central nervous system, larvae L3  (40) central nervous system, pupae P8    12 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    6 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    7 head, mated 4-day male    9 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    6 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8  (42) carcass, larvae L3 wandering  (34) carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    10 ovary, virgin 4-day female  (61) ovary, mated 4-day female  (70) testis, mated 4-day male  (51) accessory gland, mated 4-day male    17 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    38 central nervous system, larvae L3    40 central nervous system, pupae P8    12 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    6 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    7 head, mated 4-day male    9 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    6 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8    42 carcass, larvae L3 wandering    34 carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    10 ovary, virgin 4-day female    61 ovary, mated 4-day female    70 testis, mated 4-day male    51 accessory gland, mated 4-day male    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    38 central nervous system, larvae L3    40 central nervous system, pupae P8    12 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    6 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    7 head, mated 4-day male    9 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    6 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8    42 carcass, larvae L3 wandering    34 carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    10 ovary, virgin 4-day female    61 ovary, mated 4-day female    70 testis, mated 4-day male    51 accessory gland, mated 4-day male    17 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    38 central nervous system, larvae L3    40 central nervous system, pupae P8    12 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    6 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    7 head, mated 4-day male    9 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    6 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8    42 carcass, larvae L3 wandering    34 carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    10 ovary, virgin 4-day female    61 ovary, mated 4-day female    70 testis, mated 4-day male    51 accessory gland, mated 4-day male    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (38) central nervous system, larvae L3  (40) central nervous system, pupae P8    12 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    6 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    7 head, mated 4-day male    9 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    6 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8  (42) carcass, larvae L3 wandering  (34) carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    10 ovary, virgin 4-day female  (61) ovary, mated 4-day female  (70) testis, mated 4-day male  (51) accessory gland, mated 4-day male    17 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    38 central nervous system, larvae L3    40 central nervous system, pupae P8    12 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    6 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    7 head, mated 4-day male    9 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    6 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8    42 carcass, larvae L3 wandering    34 carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    10 ovary, virgin 4-day female    61 ovary, mated 4-day female    70 testis, mated 4-day male    51 accessory gland, mated 4-day male    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    38 central nervous system, larvae L3    40 central nervous system, pupae P8    12 head, virgin 1-day female    9 head, virgin 4-day female    8 head, virgin 20-day female    6 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    4 head, mated 1-day male    7 head, mated 4-day male    9 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    6 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8    42 carcass, larvae L3 wandering    34 carcass, 1-day adult    8 carcass, 4-day adult    14 carcass, 20-day adult    10 ovary, virgin 4-day female    61 ovary, mated 4-day female    70 testis, mated 4-day male    51 accessory gland, mated 4-day male    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    33 embryo 02-04hr    45 embryo 04-06hr    27 embryo 06-08hr    35 embryo 08-10hr    38 embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    8 embryo 16-18hr    10 embryo 18-20hr    7 embryo 20-22hr    16 embryo 22-24hr    16 larva L1    11 larva L2    12 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    12 white prepupae new    10 white prepupae 12hr    10 white prepupae 24hr    12 pupae 2d postWPP    11 pupae 3d postWPP    6 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    5 adult male 30day    3 adult female 01day    9 adult female 05day    27 adult female 30day    27 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (33) embryo 02-04hr  (45) embryo 04-06hr  (27) embryo 06-08hr  (35) embryo 08-10hr  (38) embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    8 embryo 16-18hr    10 embryo 18-20hr    7 embryo 20-22hr    16 embryo 22-24hr    16 larva L1    11 larva L2    12 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    12 white prepupae new    10 white prepupae 12hr    10 white prepupae 24hr    12 pupae 2d postWPP    11 pupae 3d postWPP    6 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    5 adult male 30day    3 adult female 01day    9 adult female 05day  (27) adult female 30day  (27) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    33 embryo 02-04hr    45 embryo 04-06hr    27 embryo 06-08hr    35 embryo 08-10hr    38 embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    8 embryo 16-18hr    10 embryo 18-20hr    7 embryo 20-22hr    16 embryo 22-24hr    16 larva L1    11 larva L2    12 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    12 white prepupae new    10 white prepupae 12hr    10 white prepupae 24hr    12 pupae 2d postWPP    11 pupae 3d postWPP    6 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    5 adult male 30day    3 adult female 01day    9 adult female 05day    27 adult female 30day    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    33 embryo 02-04hr    45 embryo 04-06hr    27 embryo 06-08hr    35 embryo 08-10hr    38 embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    8 embryo 16-18hr    10 embryo 18-20hr    7 embryo 20-22hr    16 embryo 22-24hr    16 larva L1    11 larva L2    12 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    12 white prepupae new    10 white prepupae 12hr    10 white prepupae 24hr    12 pupae 2d postWPP    11 pupae 3d postWPP    6 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    5 adult male 30day    3 adult female 01day    9 adult female 05day    27 adult female 30day    27 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    33 embryo 02-04hr    45 embryo 04-06hr    27 embryo 06-08hr    35 embryo 08-10hr    38 embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    8 embryo 16-18hr    10 embryo 18-20hr    7 embryo 20-22hr    16 embryo 22-24hr    16 larva L1    11 larva L2    12 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    12 white prepupae new    10 white prepupae 12hr    10 white prepupae 24hr    12 pupae 2d postWPP    11 pupae 3d postWPP    6 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    5 adult male 30day    3 adult female 01day    9 adult female 05day    27 adult female 30day    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (33) embryo 02-04hr  (45) embryo 04-06hr  27 embryo 06-08hr  (35) embryo 08-10hr  (38) embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    8 embryo 16-18hr    10 embryo 18-20hr    7 embryo 20-22hr    16 embryo 22-24hr    16 larva L1    11 larva L2    12 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    12 white prepupae new    10 white prepupae 12hr    10 white prepupae 24hr    12 pupae 2d postWPP    11 pupae 3d postWPP    6 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    5 adult male 30day    3 adult female 01day    9 adult female 05day  27 adult female 30day  27 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    33 embryo 02-04hr    45 embryo 04-06hr    27 embryo 06-08hr    35 embryo 08-10hr    38 embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    8 embryo 16-18hr    10 embryo 18-20hr    7 embryo 20-22hr    16 embryo 22-24hr    16 larva L1    11 larva L2    12 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    12 white prepupae new    10 white prepupae 12hr    10 white prepupae 24hr    12 pupae 2d postWPP    11 pupae 3d postWPP    6 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    5 adult male 30day    3 adult female 01day    9 adult female 05day    27 adult female 30day    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    33 embryo 02-04hr    45 embryo 04-06hr    27 embryo 06-08hr    35 embryo 08-10hr    38 embryo 10-12hr    24 embryo 12-14hr    18 embryo 14-16hr    8 embryo 16-18hr    10 embryo 18-20hr    7 embryo 20-22hr    16 embryo 22-24hr    16 larva L1    11 larva L2    12 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    12 white prepupae new    10 white prepupae 12hr    10 white prepupae 24hr    12 pupae 2d postWPP    11 pupae 3d postWPP    6 pupae 4d postWPP    2 adult male 01day    4 adult male 05day    5 adult male 30day    3 adult female 01day    9 adult female 05day    27 adult female 30day    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    168 Schneider line 2 Sg4    42 embryonic 1182-4H    51 embryonic GM2    46 embryonic Kc167    67 embryonic S1    73 embryonic S3    44 leg disc CME L1    48 wing disc CME-W2    32 wing disc ML-DmD8    36 wing disc ML-DmD9    39 wing disc ML-DmD16-c3    74 wing disc ML-DmD21    99 wing disc ML-DmD32    66 haltere disc ML-DmD17-c3    62 eye-antennal disc ML-DmD11    69 antennal disc ML-DmD20-c5    58 mixed discs ML-DmD4-c1    54 CNS ML-DmBG1-c1    56 CNS ML-DmBG2-c2    49 tumorous blood cells mbn2    49 ovary fGS/OSS    32 ovary OSC    90 ovary OSS    44 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (168) Schneider line 2 Sg4  (42) embryonic 1182-4H  (51) embryonic GM2  (46) embryonic Kc167  (67) embryonic S1  (73) embryonic S3  (44) leg disc CME L1  (48) wing disc CME-W2  (32) wing disc ML-DmD8  (36) wing disc ML-DmD9  (39) wing disc ML-DmD16-c3  (74) wing disc ML-DmD21  (99) wing disc ML-DmD32  (66) haltere disc ML-DmD17-c3  (62) eye-antennal disc ML-DmD11  (69) antennal disc ML-DmD20-c5  (58) mixed discs ML-DmD4-c1  (54) CNS ML-DmBG1-c1  (56) CNS ML-DmBG2-c2  (49) tumorous blood cells mbn2  (49) ovary fGS/OSS  (32) ovary OSC  (90) ovary OSS  (44) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (168) Schneider line 2 Sg4    42 embryonic 1182-4H    51 embryonic GM2    46 embryonic Kc167    67 embryonic S1    73 embryonic S3    44 leg disc CME L1    48 wing disc CME-W2    32 wing disc ML-DmD8    36 wing disc ML-DmD9    39 wing disc ML-DmD16-c3    74 wing disc ML-DmD21    99 wing disc ML-DmD32    66 haltere disc ML-DmD17-c3    62 eye-antennal disc ML-DmD11    69 antennal disc ML-DmD20-c5    58 mixed discs ML-DmD4-c1    54 CNS ML-DmBG1-c1    56 CNS ML-DmBG2-c2    49 tumorous blood cells mbn2    49 ovary fGS/OSS    32 ovary OSC    90 ovary OSS    44 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    168 Schneider line 2 Sg4    42 embryonic 1182-4H    51 embryonic GM2    46 embryonic Kc167    67 embryonic S1    73 embryonic S3    44 leg disc CME L1    48 wing disc CME-W2    32 wing disc ML-DmD8    36 wing disc ML-DmD9    39 wing disc ML-DmD16-c3    74 wing disc ML-DmD21    99 wing disc ML-DmD32    66 haltere disc ML-DmD17-c3    62 eye-antennal disc ML-DmD11    69 antennal disc ML-DmD20-c5    58 mixed discs ML-DmD4-c1    54 CNS ML-DmBG1-c1    56 CNS ML-DmBG2-c2    49 tumorous blood cells mbn2    49 ovary fGS/OSS    32 ovary OSC    90 ovary OSS    44 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    168 Schneider line 2 Sg4    42 embryonic 1182-4H    51 embryonic GM2    46 embryonic Kc167    67 embryonic S1    73 embryonic S3    44 leg disc CME L1    48 wing disc CME-W2    32 wing disc ML-DmD8    36 wing disc ML-DmD9    39 wing disc ML-DmD16-c3    74 wing disc ML-DmD21    99 wing disc ML-DmD32    66 haltere disc ML-DmD17-c3    62 eye-antennal disc ML-DmD11    69 antennal disc ML-DmD20-c5    58 mixed discs ML-DmD4-c1    54 CNS ML-DmBG1-c1    56 CNS ML-DmBG2-c2    49 tumorous blood cells mbn2    49 ovary fGS/OSS    32 ovary OSC    90 ovary OSS    44 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (168) Schneider line 2 Sg4  (42) embryonic 1182-4H  (51) embryonic GM2  (46) embryonic Kc167  (67) embryonic S1  (73) embryonic S3  (44) leg disc CME L1  (48) wing disc CME-W2  32 wing disc ML-DmD8  (36) wing disc ML-DmD9  (39) wing disc ML-DmD16-c3  (74) wing disc ML-DmD21  (99) wing disc ML-DmD32  (66) haltere disc ML-DmD17-c3  (62) eye-antennal disc ML-DmD11  (69) antennal disc ML-DmD20-c5  (58) mixed discs ML-DmD4-c1  (54) CNS ML-DmBG1-c1  (56) CNS ML-DmBG2-c2  (49) tumorous blood cells mbn2  (49) ovary fGS/OSS  32 ovary OSC  (90) ovary OSS  (44) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (168) Schneider line 2 Sg4    42 embryonic 1182-4H    51 embryonic GM2    46 embryonic Kc167    67 embryonic S1    73 embryonic S3    44 leg disc CME L1    48 wing disc CME-W2    32 wing disc ML-DmD8    36 wing disc ML-DmD9    39 wing disc ML-DmD16-c3    74 wing disc ML-DmD21    99 wing disc ML-DmD32    66 haltere disc ML-DmD17-c3    62 eye-antennal disc ML-DmD11    69 antennal disc ML-DmD20-c5    58 mixed discs ML-DmD4-c1    54 CNS ML-DmBG1-c1    56 CNS ML-DmBG2-c2    49 tumorous blood cells mbn2    49 ovary fGS/OSS    32 ovary OSC    90 ovary OSS    44 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    168 Schneider line 2 Sg4    42 embryonic 1182-4H    51 embryonic GM2    46 embryonic Kc167    67 embryonic S1    73 embryonic S3    44 leg disc CME L1    48 wing disc CME-W2    32 wing disc ML-DmD8    36 wing disc ML-DmD9    39 wing disc ML-DmD16-c3    74 wing disc ML-DmD21    99 wing disc ML-DmD32    66 haltere disc ML-DmD17-c3    62 eye-antennal disc ML-DmD11    69 antennal disc ML-DmD20-c5    58 mixed discs ML-DmD4-c1    54 CNS ML-DmBG1-c1    56 CNS ML-DmBG2-c2    49 tumorous blood cells mbn2    49 ovary fGS/OSS    32 ovary OSC    90 ovary OSS    44 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    18 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    52 Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult    27 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    28 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    55 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    37 Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3    16 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    18 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult  (52) Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult  (27) Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3  (28) Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (55) Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult  (37) Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3    16 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    18 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    52 Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult    27 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    28 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    55 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    37 Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3    16 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    18 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    52 Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult    27 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    28 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    55 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    37 Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3    16 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    18 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    52 Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult    27 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    28 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    55 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    37 Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3    16 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    18 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult  (52) Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult  27 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3  28 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (55) Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult  (37) Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3    16 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    18 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    52 Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult    27 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    28 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    55 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    37 Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3    16 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    18 Cadmium 50 mM 12 hrs, larvae L3    19 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    52 Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult    27 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    28 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    55 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    37 Paraquat 10 mM 48 hrs, 4-day adult    23 Rotenone 2 μg 12 hrs, larvae L3    16 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_17 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	BDGP expression data • LD46404 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035393 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG16753-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG16753 Class Mutagen Stocks Known lesion CG16753EY06331 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG16753 Class Mutagen Stocks Known lesion CG16753KK106584 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG16753GD9197 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD9197} NA P{KK106584} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}CG16753EY06331 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG16753 - Arpc3B anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Atg7 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG1092 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG11655 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG12057 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG1265 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG13077 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG14109 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG14995 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG15345 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG17119 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG2034 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG2931 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG2938 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG32137 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG3224 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG3603 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG4091 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG4151 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG4164 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG4415 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG4622 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG5828 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG6178 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG7071 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG7429 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG7739 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG8298 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG8671 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG8993 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - CG9394 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Cat anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Cpr100A anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Crk anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Csat anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Fdh anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Gen anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Golgin84 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Ipk1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - LamC anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Mpp6 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Ndc1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Obp44a anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Obp56e anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Pdf anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Prosβ3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - RfC3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Rsf1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - SNF4Aγ anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Sam-S anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Sbp2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Spt5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Tango14 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Timp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - Tpc2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - l(1)G0469 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - mab-21 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - msl-3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - pgant8 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - pirk anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - ppan experimental knowledge based (Guruharsha et al., 2011) CG16753 - qua anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG16753 - tok anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG16753 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 63865 DroID - A comprehensive database of gene and protein interactions. • FBgn0035393 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38365
Orthologs
OrthoDB Orthologs (14) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6HX5MV Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search EOG63R2JP Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6HX5MV)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG16753     Drosophila simulans   Dsim\GD13725 Y   Drosophila sechellia   Dsec\GM14528 Y   Drosophila erecta   Dere\GG14902 Y   Drosophila yakuba   Dyak\GE20356 Y   Drosophila ananassae   Dana\GF24266 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA14127 Y   Drosophila persimilis   Dper\GL20782 Y   Drosophila willistoni   Dwil\GK14899 Y   Drosophila virilis   Dvir\GJ11754 Y   Drosophila mojavensis   Dmoj\GI11293     Drosophila mojavensis   Dmoj\GI13898 Y   Drosophila grimshawi   Dgri\GH14572 Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (EOG63R2JP)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Tribolium castaneum Red flour beetle  Tcas\TC003652
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD13725 Drosophila sechellia Dsec\GM14528 Drosophila erecta Dere\GG14902 Drosophila yakuba Dyak\GE20356 Drosophila ananassae Dana\GF24266 Drosophila pseudoobscura pseudoobscura Dpse\GA14127 Drosophila persimilis Dper\GL20782 Drosophila willistoni Dwil\GK14899 Drosophila virilis Dvir\GJ11754 Drosophila mojavensis Dmoj\GI13898 Drosophila grimshawi Dgri\GH14572
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
Bloomington	17359 y1 w67c23; P{EPgy2}CG16753EY06331/TM3, Sb1 Ser1
VDRC	v108144 P{KK106584}VIE-260B
Genomic Clones ( 1 )
	BACR21A02 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 9 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD46404
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	RE29923 RE38479 RE38579 SD09541 SD11177
Other clones	214513.19 EC28517 EP19821
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0035393 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38365
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_139507 RefSeq (Proteins) • NP_647764 DDBJ / EMBL / GenBank • AAF47708 AAL29057 AI514657 AW943842 AY061509 CL525916 Entrez Gene - A searchable database of RefSeq genes. • 38365 UniProtKB/TrEMBL • Q9VZV8
Other Crossreferences
	BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD46404
Linkouts
	BioGRID - A database of protein and genetic interactions • 63865 DroID - A comprehensive database of gene and protein interactions. • FBgn0035393 DRSC - Results from RNAi screens. • FBgn0035393 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035393 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG16753-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0035393 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38365 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38365 modMine - Data generated by the modENCODE project. • FBgn0035393
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG16753 (Daneshvar et al., 2013, Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
References ( 12 )
Research paper	Daneshvar et al., 2013, Biol. Open 2(1): 1--9 MicroRNA miR-308 regulates dMyc through a negative feedback loop in Drosophila. [FBrf0220584]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] Guruharsha et al., 2011, Cell 147(3): Table S3. [FBrf0218395] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]