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Gene Dmel\CG1309

General Information
Symbol	Dmel\CG1309	Species	D. melanogaster
Name		Annotation symbol	CG1309
Feature type	protein_coding_gene	FlyBase ID	FBgn0035519
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	64A12-64A12	Sequence location	3L:4,259,419..4,261,649 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG1309 (FBgn0035519). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Alpha/beta hydrolase fold-1. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed in adult male stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult crop, adult heart, adult fat body, adult testis, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval/adult central nervous system, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, larval fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1630881_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG1309. Gene sequence location is 3L:4259419..4261649.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10	Controlled Vocabulary Terms day 42 of adulthood day 41 of adulthood day 30 of adulthood day 49 of adulthood day 17 of adulthood day 45 of adulthood day 8 of adulthood day 26 of adulthood day 21 of adulthood day 13 of adulthood day 25 of adulthood day 20 of adulthood day 22 of adulthood day 39 of adulthood day 7 of adulthood day 36 of adulthood day 11 of adulthood day 37 of adulthood day 27 of adulthood day 18 of adulthood day 19 of adulthood day 28 of adulthood day 9 of adulthood day 29 of adulthood adult heart day 40 of adulthood day 16 of adulthood day 24 of adulthood day 15 of adulthood day 33 of adulthood day 43 of adulthood day 47 of adulthood day 38 of adulthood day 32 of adulthood day 48 of adulthood day 23 of adulthood day 35 of adulthood day 12 of adulthood day 10 of adulthood day 31 of adulthood day 34 of adulthood day 44 of adulthood day 14 of adulthood day 46 of adulthood
FB2012_01	Sequence features BKN22220 HFA08302
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 64A12-64A12   Limits computationally determined from genome sequence between P{PZ}l(3)rG166rG166 and P{PZ}sinu06524
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG1309 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG1309-RA FBtr0073229  NM_139623   1876   524
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG1309-PA   FBpp0073085   58.4   524   8.38     NP_647880   AAF47872
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Alpha/beta hydrolase fold-1 (IPR000073)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014296 AAF47872   AI062592   AI108140   AI108214   AI108959   AI402081   AI945216   AY047560 AAK77292   BE977639   BF489530   BF490240   BF493696   BF493745   BF495001   BF495184   BF495290   BF496935   BF497049   BF497596   BF497655   BF497911   BF498072   BF498441   BF500427   BF500518   BF500884   BF502881   BF502981   BF503062   BF504928   BF506628   BG635103   BI370096   BI613934   BI626167   BI628260   BI629228   BI632255   BI632893   BI636132   CO156928   CO186276   CO295850   CO343754   CZ483483   EC194554   EC235181   EC236026   EC240757   EC257407   EV580391   EV599708   GH738912   GH740147   GH741074   GH745558   GH747263   GH763035   GH764368   GH770049
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VZF1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0035519    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0035519 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0035519 expression level Developmental Stage   Expression Level embryo 00-02hr    3613 embryo 02-04hr    1352 embryo 04-06hr    1103 embryo 06-08hr    1855 embryo 08-10hr    2231 embryo 10-12hr    2498 embryo 12-14hr    2683 embryo 14-16hr    2982 embryo 16-18hr    2148 embryo 18-20hr    1624 embryo 20-22hr    1297 embryo 22-24hr    1378 larva L1    1974 larva L2    2562 larva L3 12hr old    1841 larva L3 puffstage 1-2    1862 larva L3 puffstage 3-6    2212 larva L3 puffstage 7-9    2377 white prepupae new    2427 white prepupae 12hr    2098 white prepupae 24hr    2712 pupae 2d postWPP    3703 pupae 3d postWPP    2765 pupae 4d postWPP    1938 adult male 01day    3359 adult male 05day    4612 adult male 30day    4195 adult female 01day    2270 adult female 05day    2829 adult female 30day    2981 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3613) embryo 02-04hr  (1352) embryo 04-06hr  (1103) embryo 06-08hr  (1855) embryo 08-10hr  (2231) embryo 10-12hr  (2498) embryo 12-14hr  (2683) embryo 14-16hr  (2982) embryo 16-18hr  (2148) embryo 18-20hr  (1624) embryo 20-22hr  (1297) embryo 22-24hr  (1378) larva L1  (1974) larva L2  (2562) larva L3 12hr old  (1841) larva L3 puffstage 1-2  (1862) larva L3 puffstage 3-6  (2212) larva L3 puffstage 7-9  (2377) white prepupae new  (2427) white prepupae 12hr  (2098) white prepupae 24hr  (2712) pupae 2d postWPP  (3703) pupae 3d postWPP  (2765) pupae 4d postWPP  (1938) adult male 01day  (3359) adult male 05day  (4612) adult male 30day  (4195) adult female 01day  (2270) adult female 05day  (2829) adult female 30day  (2981) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3613) embryo 02-04hr    1352 embryo 04-06hr    1103 embryo 06-08hr  (1855) embryo 08-10hr  (2231) embryo 10-12hr  (2498) embryo 12-14hr  (2683) embryo 14-16hr  (2982) embryo 16-18hr  (2148) embryo 18-20hr  (1624) embryo 20-22hr    1297 embryo 22-24hr    1378 larva L1  (1974) larva L2  (2562) larva L3 12hr old  (1841) larva L3 puffstage 1-2  (1862) larva L3 puffstage 3-6  (2212) larva L3 puffstage 7-9  (2377) white prepupae new  (2427) white prepupae 12hr  (2098) white prepupae 24hr  (2712) pupae 2d postWPP  (3703) pupae 3d postWPP  (2765) pupae 4d postWPP  (1938) adult male 01day  (3359) adult male 05day  (4612) adult male 30day  (4195) adult female 01day  (2270) adult female 05day  (2829) adult female 30day  (2981) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3613 embryo 02-04hr    1352 embryo 04-06hr    1103 embryo 06-08hr    1855 embryo 08-10hr    2231 embryo 10-12hr    2498 embryo 12-14hr    2683 embryo 14-16hr    2982 embryo 16-18hr    2148 embryo 18-20hr    1624 embryo 20-22hr    1297 embryo 22-24hr    1378 larva L1    1974 larva L2    2562 larva L3 12hr old    1841 larva L3 puffstage 1-2    1862 larva L3 puffstage 3-6    2212 larva L3 puffstage 7-9    2377 white prepupae new    2427 white prepupae 12hr    2098 white prepupae 24hr    2712 pupae 2d postWPP    3703 pupae 3d postWPP    2765 pupae 4d postWPP    1938 adult male 01day    3359 adult male 05day    4612 adult male 30day    4195 adult female 01day    2270 adult female 05day    2829 adult female 30day    2981 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3613 embryo 02-04hr    1352 embryo 04-06hr    1103 embryo 06-08hr    1855 embryo 08-10hr    2231 embryo 10-12hr    2498 embryo 12-14hr    2683 embryo 14-16hr    2982 embryo 16-18hr    2148 embryo 18-20hr    1624 embryo 20-22hr    1297 embryo 22-24hr    1378 larva L1    1974 larva L2    2562 larva L3 12hr old    1841 larva L3 puffstage 1-2    1862 larva L3 puffstage 3-6    2212 larva L3 puffstage 7-9    2377 white prepupae new    2427 white prepupae 12hr    2098 white prepupae 24hr    2712 pupae 2d postWPP    3703 pupae 3d postWPP    2765 pupae 4d postWPP    1938 adult male 01day    3359 adult male 05day    4612 adult male 30day    4195 adult female 01day    2270 adult female 05day    2829 adult female 30day    2981 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0035519 expression level Developmental Stage   Expression Level embryo 00-02hr    3613 embryo 02-04hr    1352 embryo 04-06hr    1103 embryo 06-08hr    1855 embryo 08-10hr    2231 embryo 10-12hr    2498 embryo 12-14hr    2683 embryo 14-16hr    2982 embryo 16-18hr    2148 embryo 18-20hr    1624 embryo 20-22hr    1297 embryo 22-24hr    1378 larva L1    1974 larva L2    2562 larva L3 12hr old    1841 larva L3 puffstage 1-2    1862 larva L3 puffstage 3-6    2212 larva L3 puffstage 7-9    2377 white prepupae new    2427 white prepupae 12hr    2098 white prepupae 24hr    2712 pupae 2d postWPP    3703 pupae 3d postWPP    2765 pupae 4d postWPP    1938 adult male 01day    3359 adult male 05day    4612 adult male 30day    4195 adult female 01day    2270 adult female 05day    2829 adult female 30day    2981 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3613) embryo 02-04hr  (1352) embryo 04-06hr  (1103) embryo 06-08hr  (1855) embryo 08-10hr  (2231) embryo 10-12hr  (2498) embryo 12-14hr  (2683) embryo 14-16hr  (2982) embryo 16-18hr  (2148) embryo 18-20hr  (1624) embryo 20-22hr  (1297) embryo 22-24hr  (1378) larva L1  (1974) larva L2  (2562) larva L3 12hr old  (1841) larva L3 puffstage 1-2  (1862) larva L3 puffstage 3-6  (2212) larva L3 puffstage 7-9  (2377) white prepupae new  (2427) white prepupae 12hr  (2098) white prepupae 24hr  (2712) pupae 2d postWPP  (3703) pupae 3d postWPP  (2765) pupae 4d postWPP  (1938) adult male 01day  (3359) adult male 05day  (4612) adult male 30day  (4195) adult female 01day  (2270) adult female 05day  (2829) adult female 30day  (2981) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3613) embryo 02-04hr    1352 embryo 04-06hr    1103 embryo 06-08hr  1855 embryo 08-10hr  2231 embryo 10-12hr  (2498) embryo 12-14hr  (2683) embryo 14-16hr  (2982) embryo 16-18hr  2148 embryo 18-20hr  1624 embryo 20-22hr    1297 embryo 22-24hr    1378 larva L1  1974 larva L2  (2562) larva L3 12hr old  1841 larva L3 puffstage 1-2  1862 larva L3 puffstage 3-6  2212 larva L3 puffstage 7-9  2377 white prepupae new  2427 white prepupae 12hr  2098 white prepupae 24hr  (2712) pupae 2d postWPP  (3703) pupae 3d postWPP  (2765) pupae 4d postWPP  1938 adult male 01day  (3359) adult male 05day  (4612) adult male 30day  (4195) adult female 01day  2270 adult female 05day  (2829) adult female 30day  (2981) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3613 embryo 02-04hr    1352 embryo 04-06hr    1103 embryo 06-08hr    1855 embryo 08-10hr    2231 embryo 10-12hr    2498 embryo 12-14hr    2683 embryo 14-16hr    2982 embryo 16-18hr    2148 embryo 18-20hr    1624 embryo 20-22hr    1297 embryo 22-24hr    1378 larva L1    1974 larva L2    2562 larva L3 12hr old    1841 larva L3 puffstage 1-2    1862 larva L3 puffstage 3-6    2212 larva L3 puffstage 7-9    2377 white prepupae new    2427 white prepupae 12hr    2098 white prepupae 24hr    2712 pupae 2d postWPP    3703 pupae 3d postWPP    2765 pupae 4d postWPP    1938 adult male 01day    3359 adult male 05day    4612 adult male 30day    4195 adult female 01day    2270 adult female 05day    2829 adult female 30day    2981 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3613 embryo 02-04hr    1352 embryo 04-06hr    1103 embryo 06-08hr    1855 embryo 08-10hr    2231 embryo 10-12hr    2498 embryo 12-14hr    2683 embryo 14-16hr    2982 embryo 16-18hr    2148 embryo 18-20hr    1624 embryo 20-22hr    1297 embryo 22-24hr    1378 larva L1    1974 larva L2    2562 larva L3 12hr old    1841 larva L3 puffstage 1-2    1862 larva L3 puffstage 3-6    2212 larva L3 puffstage 7-9    2377 white prepupae new    2427 white prepupae 12hr    2098 white prepupae 24hr    2712 pupae 2d postWPP    3703 pupae 3d postWPP    2765 pupae 4d postWPP    1938 adult male 01day    3359 adult male 05day    4612 adult male 30day    4195 adult female 01day    2270 adult female 05day    2829 adult female 30day    2981 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0035519    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0035519 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult crop, adult heart, adult fat body, adult testis, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval/adult central nervous system, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, larval fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0035519 expression level Tissue   Expression Level Larval Central Nervous System    217.7 Larval Midgut    309.8 Larval Hindgut    270.6 Larval Malpighian Tubules    452.8 Larval Fat Body    351.6 Larval Salivary Gland    420.3 Larval Trachea    225.7 Larval Carcass    334.225 Adult Head    348.2 Adult Eye    710.15 Adult Brain    249.2 Adult Thoracic-Abdominal Ganglion    317 Adult Crop    622.5 Adult Midgut    333.8 Adult Hindgut    450.4 Adult Malpighian Tubules    427.7 Adult Fat Body    693 Adult Salivary Gland    372.3 Adult Heart    708.675 Adult VirginFemale Spermatheca    224.2 Adult InseminatedFemale Spermatheca    221.8 Adult Ovary    277.7 Adult Testis    548.4 Adult Male Accessory Gland    352.8 Adult Carcass    563.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    217.7 Larval Midgut    309.8 Larval Hindgut    270.6 Larval Malpighian Tubules    452.8 Larval Fat Body    351.6 Larval Salivary Gland    420.3 Larval Trachea    225.7 Larval Carcass    334.225 Adult Head    348.2 Adult Eye  (710.15) Adult Brain    249.2 Adult Thoracic-Abdominal Ganglion    317 Adult Crop  (622.5) Adult Midgut    333.8 Adult Hindgut    450.4 Adult Malpighian Tubules    427.7 Adult Fat Body  (693) Adult Salivary Gland    372.3 Adult Heart  (708.675) Adult VirginFemale Spermatheca    224.2 Adult InseminatedFemale Spermatheca    221.8 Adult Ovary    277.7 Adult Testis  (548.4) Adult Male Accessory Gland    352.8 Adult Carcass  (563.6) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    217.7 Larval Midgut    309.8 Larval Hindgut    270.6 Larval Malpighian Tubules    452.8 Larval Fat Body    351.6 Larval Salivary Gland    420.3 Larval Trachea    225.7 Larval Carcass    334.225 Adult Head    348.2 Adult Eye    710.15 Adult Brain    249.2 Adult Thoracic-Abdominal Ganglion    317 Adult Crop    622.5 Adult Midgut    333.8 Adult Hindgut    450.4 Adult Malpighian Tubules    427.7 Adult Fat Body    693 Adult Salivary Gland    372.3 Adult Heart    708.675 Adult VirginFemale Spermatheca    224.2 Adult InseminatedFemale Spermatheca    221.8 Adult Ovary    277.7 Adult Testis    548.4 Adult Male Accessory Gland    352.8 Adult Carcass    563.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    217.7 Larval Midgut    309.8 Larval Hindgut    270.6 Larval Malpighian Tubules    452.8 Larval Fat Body    351.6 Larval Salivary Gland    420.3 Larval Trachea    225.7 Larval Carcass    334.225 Adult Head    348.2 Adult Eye    710.15 Adult Brain    249.2 Adult Thoracic-Abdominal Ganglion    317 Adult Crop    622.5 Adult Midgut    333.8 Adult Hindgut    450.4 Adult Malpighian Tubules    427.7 Adult Fat Body    693 Adult Salivary Gland    372.3 Adult Heart    708.675 Adult VirginFemale Spermatheca    224.2 Adult InseminatedFemale Spermatheca    221.8 Adult Ovary    277.7 Adult Testis    548.4 Adult Male Accessory Gland    352.8 Adult Carcass    563.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0035519 expression level Tissue   Expression Level Larval Central Nervous System    217.7 Larval Midgut    309.8 Larval Hindgut    270.6 Larval Malpighian Tubules    452.8 Larval Fat Body    351.6 Larval Salivary Gland    420.3 Larval Trachea    225.7 Larval Carcass    334.225 Adult Head    348.2 Adult Eye    710.15 Adult Brain    249.2 Adult Thoracic-Abdominal Ganglion    317 Adult Crop    622.5 Adult Midgut    333.8 Adult Hindgut    450.4 Adult Malpighian Tubules    427.7 Adult Fat Body    693 Adult Salivary Gland    372.3 Adult Heart    708.675 Adult VirginFemale Spermatheca    224.2 Adult InseminatedFemale Spermatheca    221.8 Adult Ovary    277.7 Adult Testis    548.4 Adult Male Accessory Gland    352.8 Adult Carcass    563.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    217.7 Larval Midgut    309.8 Larval Hindgut    270.6 Larval Malpighian Tubules    452.8 Larval Fat Body    351.6 Larval Salivary Gland    420.3 Larval Trachea    225.7 Larval Carcass    334.225 Adult Head    348.2 Adult Eye  710.15 Adult Brain    249.2 Adult Thoracic-Abdominal Ganglion    317 Adult Crop  622.5 Adult Midgut    333.8 Adult Hindgut    450.4 Adult Malpighian Tubules    427.7 Adult Fat Body  693 Adult Salivary Gland    372.3 Adult Heart  708.675 Adult VirginFemale Spermatheca    224.2 Adult InseminatedFemale Spermatheca    221.8 Adult Ovary    277.7 Adult Testis  548.4 Adult Male Accessory Gland    352.8 Adult Carcass  563.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    217.7 Larval Midgut    309.8 Larval Hindgut    270.6 Larval Malpighian Tubules    452.8 Larval Fat Body    351.6 Larval Salivary Gland    420.3 Larval Trachea    225.7 Larval Carcass    334.225 Adult Head    348.2 Adult Eye    710.15 Adult Brain    249.2 Adult Thoracic-Abdominal Ganglion    317 Adult Crop    622.5 Adult Midgut    333.8 Adult Hindgut    450.4 Adult Malpighian Tubules    427.7 Adult Fat Body    693 Adult Salivary Gland    372.3 Adult Heart    708.675 Adult VirginFemale Spermatheca    224.2 Adult InseminatedFemale Spermatheca    221.8 Adult Ovary    277.7 Adult Testis    548.4 Adult Male Accessory Gland    352.8 Adult Carcass    563.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    217.7 Larval Midgut    309.8 Larval Hindgut    270.6 Larval Malpighian Tubules    452.8 Larval Fat Body    351.6 Larval Salivary Gland    420.3 Larval Trachea    225.7 Larval Carcass    334.225 Adult Head    348.2 Adult Eye    710.15 Adult Brain    249.2 Adult Thoracic-Abdominal Ganglion    317 Adult Crop    622.5 Adult Midgut    333.8 Adult Hindgut    450.4 Adult Malpighian Tubules    427.7 Adult Fat Body    693 Adult Salivary Gland    372.3 Adult Heart    708.675 Adult VirginFemale Spermatheca    224.2 Adult InseminatedFemale Spermatheca    221.8 Adult Ovary    277.7 Adult Testis    548.4 Adult Male Accessory Gland    352.8 Adult Carcass    563.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    348.2   NA  Eye    710.15   NA  Brain    249.2   217.7  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    317   NA  Crop    622.5   309.8  Midgut    333.8   270.6  Hindgut    450.4   452.8  Malpighian Tubules    427.7   351.6  Fat Body    693   420.3  Salivary Gland    372.3   NA  Heart    708.675   225.7  Trachea    NA   NA  VirginFemale Spermatheca    224.2   NA  InseminatedFemale Spermatheca    221.8   NA  Ovary    277.7   NA  Testis    548.4   NA  Male Accessory Gland    352.8   334.225  Carcass    563.6 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_21
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035519 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1309-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG1309 Stages(s) 1-3 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG1309GD2299 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG1309 Class Mutagen Stocks Known lesion CG1309f00997 piggyBac transposase 1 -- CG1309MI01616 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG1309 Class Mutagen Stocks Known lesion CG1309GD2299 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG1309KK102154 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel8098 (Ryder, 2004.4.26) Df(3L)Exel9000 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD2299} NA P{KK102154} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}CG11586MI01616 NA PBac{WH}CG1309f00997 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG1309 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 63997 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0035519 DroID - A comprehensive database of gene and protein interactions. • FBgn0035519 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38519
Orthologs
Genome-wide drosophilid orthologs	Dana\GF25056 Dere\GG15211 Dgri\GH15936 Dmoj\GI16588 Dper\GL12842 Dpse\GA12040 Dsec\GM14640 Dsim\GD13828 Dvir\GJ12840 Dwil\GK10553 Dyak\GE21430
Curated drosophilid orthologs	Dpse\GA12040
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL011209-PA Aedes aegypti (mosquito) AGAP005364-PA Anopheles gambiae (mosquito) XP_395377.3 Apis mellifera (honey bee) XP_001951142.1 Acyrthosiphon pisum (pea aphid) 204063 Branchiostoma floridae (lancelet) XP_001894936.1 Brugia malayi (roundworm nematode) ENSBTAP00000000755 Bos taurus (bovine) CN06056 Caenorhabditis brenneri (small nematode) CBP27682 Caenorhabditis briggsae (nematode) CE00711 Caenorhabditis elegans (worm) ENSCAFP00000000853 Canis familiaris (dog) ENSCINP00000006724 Ciona intestinalis (sea squirt) CPIJ012118 Culex pipens (mosquito) ENSCPOP00000009695 Cavia porcellus (guinea pig) RP09426 Caenorhabditis remanei (nematode) 165072 Capitella spl (polychaete worm) 65805 Daphnia pulex (daphnia) ENSECAP00000011732 Equus caballus (horse) ENSGACP00000012645 Gymnopilus aculeatus (mushroom) 185319 Hypsipyla robusta (cedar shoot borer) ENSP00000293664 Homo sapiens (human) ENSP00000365002 Homo sapiens (human) ENSP00000372914 Homo sapiens (human) ISCW002670-PA Ixodes scapularis (deer tick) 235472 Lottia gigantea (owl limpet) ENSMODP00000019085 Monodelphis domestica (gray opossum) ENSMMUP00000020586 Macaca mulatta (rhesus monkey) ENSMUSP00000007251 Mus musculus (house mouse) XP_001605662.1 Nasonia vitripennis (wasp) ENSOANP00000007812 Ornithorynchus anatinus (platypus) ENSORLP00000016435 Oryzias latipes (japanese killifish) PHUM002928-PA Pediculus humanus (human body louse) PP11809 Pristionchus pacificus (nematode) ENSPPYP00000018394 Pongo pygmaeus (orangutan) ENSPTRP00000030679 Pan troglodytes (chimpanzee) ENSRNOP00000001121 Rattus norvegicus (norway rat) XP_786661.2 Strongylocentrotus purpuratus (purple sea urchin) 53422 Trichoplax adhaerens (metazoa) XP_973290.2 Tribolium castaneum (red flour beetle) ENSTNIP00000010832 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000005647 Takifugu rubripes (pufferfish Takifugu) 96809.m00035 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000051929 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB13217 NV16886 LH21702 ISCW002670 FBgn0238689 FBgn0212568 FBgn0200075 FBgn0185525 FBgn0169561 JGI_V11_65805 FBgn0072088 FBgn0150448 FBgn0139336 FBgn0123407 FBgn0107463 FBgn0102048 CPIJ012118 CPIJ009920 ACYPI006810 GB10172 AGAP005364 AAEL011209 AAEL006569 PHUM500560 GLEAN_02972
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	34223 y1 w*; Mi{MIC}CG11586MI01616 CG1309MI01616/TM3, Sb1 Ser1
Harvard	- PBac{WH}CG1309f00997
VDRC	v104669 P{KK102154}VIE-260B v37227 w1118; P{GD2299}v37227 v37228 w1118; P{GD2299}v37228
Genomic Clones ( 2 )
	BACR39O11 BACR48M07 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 57 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH07444
Other clones	DPiM_GH07444
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT02026 AT02080 AT03808 AT04043 AT04183 AT07068 AT09159 AT10947 AT11105 AT11804 AT11870 AT12231 AT12432 AT12849 AT15333 AT15489 AT16036 AT18727 AT18857 AT18967 AT25576 AT26558 AT31579 GH01841 GH06889 GH06989 RE56491 RH43204 RH56617 RH58064 RH66716 SD17709 SD25967 SD26789
Other clones	65012 78159 214375.24 bs10c08 bs67c02 CK01.18D.D9 CK01.23D.F10 Dmel_dig_001242_0688_1798 Dmel_neb_015951_0826_3279 EK018211 EK211748 EN09602 EP17958 RP001001144 RP001003551 RP001012132 RP001016933 RP001022602 RP001041284 RP001051288 RP001052750
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0035519 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38519
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_139623 RefSeq (Proteins) • NP_647880 DDBJ / EMBL / GenBank • AAF47872 AAK77292 AI108959 AI402081 AI945216 AY047560 CZ483483 Entrez Gene - A searchable database of RefSeq genes. • 38519 UniProtKB/TrEMBL • Q9VZF1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Alpha/beta hydrolase fold-1 (IPR000073)
Linkouts
	BioGRID - A database of protein and genetic interactions • 63997 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0035519 DroID - A comprehensive database of gene and protein interactions. • FBgn0035519 DRSC - Results from RNAi screens. • FBgn0035519 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035519 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1309-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0035519 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38519 InParanoid A subset of ortholog calls from InParanoid. • AAEL011209-PA Aedes aegypti (mosquito) AGAP005364-PA Anopheles gambiae (mosquito) XP_395377.3 Apis mellifera (honey bee) XP_001951142.1 Acyrthosiphon pisum (pea aphid) 204063 Branchiostoma floridae (lancelet) XP_001894936.1 Brugia malayi (roundworm nematode) ENSBTAP00000000755 Bos taurus (bovine) CN06056 Caenorhabditis brenneri (small nematode) CBP27682 Caenorhabditis briggsae (nematode) CE00711 Caenorhabditis elegans (worm) ENSCAFP00000000853 Canis familiaris (dog) ENSCINP00000006724 Ciona intestinalis (sea squirt) CPIJ012118 Culex pipens (mosquito) ENSCPOP00000009695 Cavia porcellus (guinea pig) RP09426 Caenorhabditis remanei (nematode) 165072 Capitella spl (polychaete worm) 65805 Daphnia pulex (daphnia) ENSECAP00000011732 Equus caballus (horse) ENSGACP00000012645 Gymnopilus aculeatus (mushroom) 185319 Hypsipyla robusta (cedar shoot borer) ENSP00000293664 Homo sapiens (human) ENSP00000365002 Homo sapiens (human) ENSP00000372914 Homo sapiens (human) ISCW002670-PA Ixodes scapularis (deer tick) 235472 Lottia gigantea (owl limpet) ENSMODP00000019085 Monodelphis domestica (gray opossum) ENSMMUP00000020586 Macaca mulatta (rhesus monkey) ENSMUSP00000007251 Mus musculus (house mouse) XP_001605662.1 Nasonia vitripennis (wasp) ENSOANP00000007812 Ornithorynchus anatinus (platypus) ENSORLP00000016435 Oryzias latipes (japanese killifish) PHUM002928-PA Pediculus humanus (human body louse) PP11809 Pristionchus pacificus (nematode) ENSPPYP00000018394 Pongo pygmaeus (orangutan) ENSPTRP00000030679 Pan troglodytes (chimpanzee) ENSRNOP00000001121 Rattus norvegicus (norway rat) XP_786661.2 Strongylocentrotus purpuratus (purple sea urchin) 53422 Trichoplax adhaerens (metazoa) XP_973290.2 Tribolium castaneum (red flour beetle) ENSTNIP00000010832 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000005647 Takifugu rubripes (pufferfish Takifugu) 96809.m00035 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000051929 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38519 modMine - Data generated by the modENCODE project. • FBgn0035519 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB13217 NV16886 LH21702 ISCW002670 FBgn0238689 FBgn0212568 FBgn0200075 FBgn0185525 FBgn0169561 JGI_V11_65805 FBgn0072088 FBgn0150448 FBgn0139336 FBgn0123407 FBgn0107463 FBgn0102048 CPIJ012118 CPIJ009920 ACYPI006810 GB10172 AGAP005364 AAEL011209 AAEL006569 PHUM500560 GLEAN_02972
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG1309 (Keleman et al., 2009.8.5, Cammarato et al., 2011)
Name Synonym
Secondary FlyBase IDs
References ( 15 )
Research paper	Collins, 2005, Genetics 170(1): 173--184 A genetic screen in Drosophila for identifying novel components of the hedgehog signaling pathway. [FBrf0188527]
Supplementary material	Cammarato et al., 2011, PLoS ONE 6(4): Table S1. Proteins & Peptides. [FBrf0214682] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Bellen, 2011.1.31, set919.xml set919.xml [FBrf0212923] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Oliver, 2001.8.16, File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). [FBrf0137492]
Computer file	Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. Genomic mapping of Exelixis insertion collection. [FBrf0184340] Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]