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Gene Dmel\CG11583

General Information
Symbol	Dmel\CG11583	Species	D. melanogaster
Name		Annotation symbol	CG11583
Feature type	protein_coding_gene	FlyBase ID	FBgn0035524
Gene Model Status	Current	Stock availability	7 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	64A12-64A12	Sequence location	3L:4,281,504..4,282,798 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG11583 (FBgn0035524). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: neurogenesis. 3 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has one annotated transcript and one annotated polypeptide. Protein features are: Anticodon-binding; Brix domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 and 18-24 hour embryonic stages, during early larval stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1624779_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG11583. Gene sequence location is 3L:4281504..4282798.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10	References Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593
FB2012_01	Sequence features HFA08202 BKN27661
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 64A12-64A12   Limits computationally determined from genome sequence between P{PZ}l(3)rG166rG166 and P{PZ}sinu06524
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG11583 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG11583-RA FBtr0073242  NM_001038900   1234   356
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG11583-PA   FBpp0073098   41.3   356   10.55     NP_001033989   AAF47877
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Brix domain (IPR007109) Anticodon-binding (IPR004154)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201304   AA201319   AA201539   AA540606   AA541071   AA736105   AA804087   AE014296 AAF47877   AI514663   AY118916 AAM50776   AY231855   BI236545   BI364572   BI369148   BI370681   BI373532   BI621116   BI641045   BP549824   BP550369   CO192485   CO193911   CO271145   CO282648   CZ466918   CZ479268   CZ479269   EC085033   EC225402   EV577537   EV579565   EV598781   EV599743   GH740081   GH741586   GH741662   GH742208   GH745189   GH745652   GH746587   GH747319   GH762770   GH762904   GH763793   GH764673   GH765331   GH766015   GH766542   GH770035   GH779279   GH779422   GH779580   GH779778
UniProtKB/Swiss-Prot	Q9VZE6
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0035524    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0035524 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 and 18-24 hour embryonic stages, during early larval stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0035524 expression level Developmental Stage   Expression Level embryo 00-02hr    4926 embryo 02-04hr    7678 embryo 04-06hr    6351 embryo 06-08hr    6157 embryo 08-10hr    6180 embryo 10-12hr    4644 embryo 12-14hr    3920 embryo 14-16hr    2355 embryo 16-18hr    2306 embryo 18-20hr    1590 embryo 20-22hr    4210 embryo 22-24hr    3704 larva L1    5222 larva L2    2768 larva L3 12hr old    1664 larva L3 puffstage 1-2    705 larva L3 puffstage 3-6    892 larva L3 puffstage 7-9    1210 white prepupae new    1090 white prepupae 12hr    880 white prepupae 24hr    961 pupae 2d postWPP    994 pupae 3d postWPP    608 pupae 4d postWPP    562 adult male 01day    500 adult male 05day    595 adult male 30day    505 adult female 01day    2447 adult female 05day    4466 adult female 30day    4359 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (4926) embryo 02-04hr  (7678) embryo 04-06hr  (6351) embryo 06-08hr  (6157) embryo 08-10hr  (6180) embryo 10-12hr  (4644) embryo 12-14hr  (3920) embryo 14-16hr  (2355) embryo 16-18hr  (2306) embryo 18-20hr  (1590) embryo 20-22hr  (4210) embryo 22-24hr  (3704) larva L1  (5222) larva L2  (2768) larva L3 12hr old  (1664) larva L3 puffstage 1-2  (705) larva L3 puffstage 3-6  (892) larva L3 puffstage 7-9  (1210) white prepupae new  (1090) white prepupae 12hr  (880) white prepupae 24hr  (961) pupae 2d postWPP  (994) pupae 3d postWPP  (608) pupae 4d postWPP  (562) adult male 01day  (500) adult male 05day  (595) adult male 30day  (505) adult female 01day  (2447) adult female 05day  (4466) adult female 30day  (4359) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (4926) embryo 02-04hr  (7678) embryo 04-06hr  (6351) embryo 06-08hr  (6157) embryo 08-10hr  (6180) embryo 10-12hr  (4644) embryo 12-14hr  (3920) embryo 14-16hr  (2355) embryo 16-18hr  (2306) embryo 18-20hr  (1590) embryo 20-22hr  (4210) embryo 22-24hr  (3704) larva L1  (5222) larva L2  (2768) larva L3 12hr old  (1664) larva L3 puffstage 1-2    705 larva L3 puffstage 3-6    892 larva L3 puffstage 7-9    1210 white prepupae new    1090 white prepupae 12hr    880 white prepupae 24hr    961 pupae 2d postWPP    994 pupae 3d postWPP    608 pupae 4d postWPP    562 adult male 01day    500 adult male 05day    595 adult male 30day    505 adult female 01day  (2447) adult female 05day  (4466) adult female 30day  (4359) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    4926 embryo 02-04hr    7678 embryo 04-06hr    6351 embryo 06-08hr    6157 embryo 08-10hr    6180 embryo 10-12hr    4644 embryo 12-14hr    3920 embryo 14-16hr    2355 embryo 16-18hr    2306 embryo 18-20hr    1590 embryo 20-22hr    4210 embryo 22-24hr    3704 larva L1    5222 larva L2    2768 larva L3 12hr old    1664 larva L3 puffstage 1-2    705 larva L3 puffstage 3-6    892 larva L3 puffstage 7-9    1210 white prepupae new    1090 white prepupae 12hr    880 white prepupae 24hr    961 pupae 2d postWPP    994 pupae 3d postWPP    608 pupae 4d postWPP    562 adult male 01day    500 adult male 05day    595 adult male 30day    505 adult female 01day    2447 adult female 05day    4466 adult female 30day    4359 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    4926 embryo 02-04hr    7678 embryo 04-06hr    6351 embryo 06-08hr    6157 embryo 08-10hr    6180 embryo 10-12hr    4644 embryo 12-14hr    3920 embryo 14-16hr    2355 embryo 16-18hr    2306 embryo 18-20hr    1590 embryo 20-22hr    4210 embryo 22-24hr    3704 larva L1    5222 larva L2    2768 larva L3 12hr old    1664 larva L3 puffstage 1-2    705 larva L3 puffstage 3-6    892 larva L3 puffstage 7-9    1210 white prepupae new    1090 white prepupae 12hr    880 white prepupae 24hr    961 pupae 2d postWPP    994 pupae 3d postWPP    608 pupae 4d postWPP    562 adult male 01day    500 adult male 05day    595 adult male 30day    505 adult female 01day    2447 adult female 05day    4466 adult female 30day    4359 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0035524 expression level Developmental Stage   Expression Level embryo 00-02hr    4926 embryo 02-04hr    7678 embryo 04-06hr    6351 embryo 06-08hr    6157 embryo 08-10hr    6180 embryo 10-12hr    4644 embryo 12-14hr    3920 embryo 14-16hr    2355 embryo 16-18hr    2306 embryo 18-20hr    1590 embryo 20-22hr    4210 embryo 22-24hr    3704 larva L1    5222 larva L2    2768 larva L3 12hr old    1664 larva L3 puffstage 1-2    705 larva L3 puffstage 3-6    892 larva L3 puffstage 7-9    1210 white prepupae new    1090 white prepupae 12hr    880 white prepupae 24hr    961 pupae 2d postWPP    994 pupae 3d postWPP    608 pupae 4d postWPP    562 adult male 01day    500 adult male 05day    595 adult male 30day    505 adult female 01day    2447 adult female 05day    4466 adult female 30day    4359 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (4926) embryo 02-04hr  (7678) embryo 04-06hr  (6351) embryo 06-08hr  (6157) embryo 08-10hr  (6180) embryo 10-12hr  (4644) embryo 12-14hr  (3920) embryo 14-16hr  (2355) embryo 16-18hr  (2306) embryo 18-20hr  (1590) embryo 20-22hr  (4210) embryo 22-24hr  (3704) larva L1  (5222) larva L2  (2768) larva L3 12hr old  (1664) larva L3 puffstage 1-2  (705) larva L3 puffstage 3-6  (892) larva L3 puffstage 7-9  (1210) white prepupae new  (1090) white prepupae 12hr  (880) white prepupae 24hr  (961) pupae 2d postWPP  (994) pupae 3d postWPP  (608) pupae 4d postWPP  (562) adult male 01day  (500) adult male 05day  (595) adult male 30day  (505) adult female 01day  (2447) adult female 05day  (4466) adult female 30day  (4359) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (4926) embryo 02-04hr  (7678) embryo 04-06hr  (6351) embryo 06-08hr  (6157) embryo 08-10hr  (6180) embryo 10-12hr  (4644) embryo 12-14hr  (3920) embryo 14-16hr  2355 embryo 16-18hr  2306 embryo 18-20hr  1590 embryo 20-22hr  (4210) embryo 22-24hr  (3704) larva L1  (5222) larva L2  (2768) larva L3 12hr old  1664 larva L3 puffstage 1-2    705 larva L3 puffstage 3-6    892 larva L3 puffstage 7-9    1210 white prepupae new    1090 white prepupae 12hr    880 white prepupae 24hr    961 pupae 2d postWPP    994 pupae 3d postWPP    608 pupae 4d postWPP    562 adult male 01day    500 adult male 05day    595 adult male 30day    505 adult female 01day  2447 adult female 05day  (4466) adult female 30day  (4359) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    4926 embryo 02-04hr    7678 embryo 04-06hr    6351 embryo 06-08hr    6157 embryo 08-10hr    6180 embryo 10-12hr    4644 embryo 12-14hr    3920 embryo 14-16hr    2355 embryo 16-18hr    2306 embryo 18-20hr    1590 embryo 20-22hr    4210 embryo 22-24hr    3704 larva L1    5222 larva L2    2768 larva L3 12hr old    1664 larva L3 puffstage 1-2    705 larva L3 puffstage 3-6    892 larva L3 puffstage 7-9    1210 white prepupae new    1090 white prepupae 12hr    880 white prepupae 24hr    961 pupae 2d postWPP    994 pupae 3d postWPP    608 pupae 4d postWPP    562 adult male 01day    500 adult male 05day    595 adult male 30day    505 adult female 01day    2447 adult female 05day    4466 adult female 30day    4359 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    4926 embryo 02-04hr    7678 embryo 04-06hr    6351 embryo 06-08hr    6157 embryo 08-10hr    6180 embryo 10-12hr    4644 embryo 12-14hr    3920 embryo 14-16hr    2355 embryo 16-18hr    2306 embryo 18-20hr    1590 embryo 20-22hr    4210 embryo 22-24hr    3704 larva L1    5222 larva L2    2768 larva L3 12hr old    1664 larva L3 puffstage 1-2    705 larva L3 puffstage 3-6    892 larva L3 puffstage 7-9    1210 white prepupae new    1090 white prepupae 12hr    880 white prepupae 24hr    961 pupae 2d postWPP    994 pupae 3d postWPP    608 pupae 4d postWPP    562 adult male 01day    500 adult male 05day    595 adult male 30day    505 adult female 01day    2447 adult female 05day    4466 adult female 30day    4359 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0035524    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0035524 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0035524 expression level Tissue   Expression Level Larval Central Nervous System    206 Larval Midgut    34.1 Larval Hindgut    75.6 Larval Malpighian Tubules    30.2 Larval Fat Body    31.5 Larval Salivary Gland    141.9 Larval Trachea    256.85 Larval Carcass    119.45 Adult Head    64.6 Adult Eye    59.175 Adult Brain    88.3 Adult Thoracic-Abdominal Ganglion    80.9 Adult Crop    71.9 Adult Midgut    64.9 Adult Hindgut    48.8 Adult Malpighian Tubules    62.3 Adult Fat Body    83.2 Adult Salivary Gland    51.5 Adult Heart    91.675 Adult VirginFemale Spermatheca    85.1 Adult InseminatedFemale Spermatheca    148.9 Adult Ovary    391.6 Adult Testis    53.6 Adult Male Accessory Gland    143 Adult Carcass    50.4 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    206 Larval Midgut    34.1 Larval Hindgut    75.6 Larval Malpighian Tubules    30.2 Larval Fat Body    31.5 Larval Salivary Gland    141.9 Larval Trachea    256.85 Larval Carcass    119.45 Adult Head    64.6 Adult Eye    59.175 Adult Brain    88.3 Adult Thoracic-Abdominal Ganglion    80.9 Adult Crop    71.9 Adult Midgut    64.9 Adult Hindgut    48.8 Adult Malpighian Tubules    62.3 Adult Fat Body    83.2 Adult Salivary Gland    51.5 Adult Heart    91.675 Adult VirginFemale Spermatheca    85.1 Adult InseminatedFemale Spermatheca    148.9 Adult Ovary    391.6 Adult Testis    53.6 Adult Male Accessory Gland    143 Adult Carcass    50.4 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    206 Larval Midgut    34.1 Larval Hindgut    75.6 Larval Malpighian Tubules    30.2 Larval Fat Body    31.5 Larval Salivary Gland    141.9 Larval Trachea    256.85 Larval Carcass    119.45 Adult Head    64.6 Adult Eye    59.175 Adult Brain    88.3 Adult Thoracic-Abdominal Ganglion    80.9 Adult Crop    71.9 Adult Midgut    64.9 Adult Hindgut    48.8 Adult Malpighian Tubules    62.3 Adult Fat Body    83.2 Adult Salivary Gland    51.5 Adult Heart    91.675 Adult VirginFemale Spermatheca    85.1 Adult InseminatedFemale Spermatheca    148.9 Adult Ovary    391.6 Adult Testis    53.6 Adult Male Accessory Gland    143 Adult Carcass    50.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    206 Larval Midgut    34.1 Larval Hindgut    75.6 Larval Malpighian Tubules    30.2 Larval Fat Body    31.5 Larval Salivary Gland    141.9 Larval Trachea    256.85 Larval Carcass    119.45 Adult Head    64.6 Adult Eye    59.175 Adult Brain    88.3 Adult Thoracic-Abdominal Ganglion    80.9 Adult Crop    71.9 Adult Midgut    64.9 Adult Hindgut    48.8 Adult Malpighian Tubules    62.3 Adult Fat Body    83.2 Adult Salivary Gland    51.5 Adult Heart    91.675 Adult VirginFemale Spermatheca    85.1 Adult InseminatedFemale Spermatheca    148.9 Adult Ovary    391.6 Adult Testis    53.6 Adult Male Accessory Gland    143 Adult Carcass    50.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0035524 expression level Tissue   Expression Level Larval Central Nervous System    206 Larval Midgut    34.1 Larval Hindgut    75.6 Larval Malpighian Tubules    30.2 Larval Fat Body    31.5 Larval Salivary Gland    141.9 Larval Trachea    256.85 Larval Carcass    119.45 Adult Head    64.6 Adult Eye    59.175 Adult Brain    88.3 Adult Thoracic-Abdominal Ganglion    80.9 Adult Crop    71.9 Adult Midgut    64.9 Adult Hindgut    48.8 Adult Malpighian Tubules    62.3 Adult Fat Body    83.2 Adult Salivary Gland    51.5 Adult Heart    91.675 Adult VirginFemale Spermatheca    85.1 Adult InseminatedFemale Spermatheca    148.9 Adult Ovary    391.6 Adult Testis    53.6 Adult Male Accessory Gland    143 Adult Carcass    50.4 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    206 Larval Midgut    34.1 Larval Hindgut    75.6 Larval Malpighian Tubules    30.2 Larval Fat Body    31.5 Larval Salivary Gland    141.9 Larval Trachea    256.85 Larval Carcass    119.45 Adult Head    64.6 Adult Eye    59.175 Adult Brain    88.3 Adult Thoracic-Abdominal Ganglion    80.9 Adult Crop    71.9 Adult Midgut    64.9 Adult Hindgut    48.8 Adult Malpighian Tubules    62.3 Adult Fat Body    83.2 Adult Salivary Gland    51.5 Adult Heart    91.675 Adult VirginFemale Spermatheca    85.1 Adult InseminatedFemale Spermatheca    148.9 Adult Ovary    391.6 Adult Testis    53.6 Adult Male Accessory Gland    143 Adult Carcass    50.4 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    206 Larval Midgut    34.1 Larval Hindgut    75.6 Larval Malpighian Tubules    30.2 Larval Fat Body    31.5 Larval Salivary Gland    141.9 Larval Trachea    256.85 Larval Carcass    119.45 Adult Head    64.6 Adult Eye    59.175 Adult Brain    88.3 Adult Thoracic-Abdominal Ganglion    80.9 Adult Crop    71.9 Adult Midgut    64.9 Adult Hindgut    48.8 Adult Malpighian Tubules    62.3 Adult Fat Body    83.2 Adult Salivary Gland    51.5 Adult Heart    91.675 Adult VirginFemale Spermatheca    85.1 Adult InseminatedFemale Spermatheca    148.9 Adult Ovary    391.6 Adult Testis    53.6 Adult Male Accessory Gland    143 Adult Carcass    50.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    206 Larval Midgut    34.1 Larval Hindgut    75.6 Larval Malpighian Tubules    30.2 Larval Fat Body    31.5 Larval Salivary Gland    141.9 Larval Trachea    256.85 Larval Carcass    119.45 Adult Head    64.6 Adult Eye    59.175 Adult Brain    88.3 Adult Thoracic-Abdominal Ganglion    80.9 Adult Crop    71.9 Adult Midgut    64.9 Adult Hindgut    48.8 Adult Malpighian Tubules    62.3 Adult Fat Body    83.2 Adult Salivary Gland    51.5 Adult Heart    91.675 Adult VirginFemale Spermatheca    85.1 Adult InseminatedFemale Spermatheca    148.9 Adult Ovary    391.6 Adult Testis    53.6 Adult Male Accessory Gland    143 Adult Carcass    50.4 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    64.6   NA  Eye    59.175   NA  Brain    88.3   206  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    80.9   NA  Crop    71.9   34.1  Midgut    64.9   75.6  Hindgut    48.8   30.2  Malpighian Tubules    62.3   31.5  Fat Body    83.2   141.9  Salivary Gland    51.5   NA  Heart    91.675   256.85  Trachea    NA   NA  VirginFemale Spermatheca    85.1   NA  InseminatedFemale Spermatheca    148.9   NA  Ovary    391.6   NA  Testis    53.6   NA  Male Accessory Gland    143   119.45  Carcass    50.4 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_08
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035524 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG32253-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG11583 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL41407 CG11583GD10836 semi-lethal | pupal stage, with Scer\GAL4pnr-MD237 CG11583GD10836 Other Phenotypes Allele neuroanatomy defective | larval stage, with Scer\GAL41407 CG11583GD10836 visible, with Scer\GAL4pnr-MD237 CG11583GD10836 Phenotype manifest in Allele embryonic/larval neuroblast | larval stage, with Scer\GAL41407 CG11583GD10836 ganglion mother cell | larval stage, with Scer\GAL41407 CG11583GD10836 mesothoracic tergum, with Scer\GAL4pnr-MD237 CG11583GD10836
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG11583 Class Mutagen Stocks Known lesion CG11583c01124 piggyBac transposase 3 -- CG11583e01456 piggyBac transposase 2 --
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG11583 Class Mutagen Stocks Known lesion CG11583GD10836 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel8098 (Ryder, 2004.4.26) Df(3L)Exel9000 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10836} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{PB}CG11583c01124 NA PBac{RB}CG11583e01456 NA
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
ribosomal large subunit biogenesis inferred from sequence or structural similarity with UniProtKB:Q9VZE6 (assigned by UniProtKB) (Swiss-Prot Project Members, 2003.9.15)
Cellular Component
CV term Evidence References
nucleolus inferred from sequence or structural similarity with UniProtKB:Q9VZE6 (assigned by UniProtKB) (Swiss-Prot Project Members, 2003.9.15)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG11583 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 77459 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0035524 DroID - A comprehensive database of gene and protein interactions. • FBgn0035524 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 326206
Orthologs
Genome-wide drosophilid orthologs	Dana\GF24741 Dere\GG14198 Dgri\GH15536 Dmoj\GI16813 Dper\GL12724 Dpse\GA16790 Dsec\GM13988 Dsim\GD13269 Dvir\GJ12560 Dwil\GK10567 Dyak\GE20628
Curated drosophilid orthologs	Dpse\GA16790   Dyak\GE20628
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL001917-PA Aedes aegypti (mosquito) AGAP005365-PA Anopheles gambiae (mosquito) XP_001119973.1 Apis mellifera (honey bee) XP_001951576.1 Acyrthosiphon pisum (pea aphid) At3g15460.1 Arabidopsis thaliana (wall cress) 11789 Batrachochytrium dendrobatidis (chytrid fungus) 57637 Branchiostoma floridae (lancelet) XP_001900907.1 Brugia malayi (roundworm nematode) BGIBMGA009983-PA Bombyx mori (silk worm) ENSBTAP00000025572 Bos taurus (bovine) CAL0003537 Candida albicans (a form of yeast) CN10480 Caenorhabditis brenneri (small nematode) CBP32788 Caenorhabditis briggsae (nematode) CE00268 Caenorhabditis elegans (worm) ENSCAFP00000027733 Canis familiaris (dog) CAGL0I07975g Candida glabrata (haploid yeast) Chro.40174 Cryptosporidium hominis (obligate parasite) ENSCINP00000003437 Ciona intestinalis (sea squirt) JA12670 Caenorhabditis japonica (nematode) CMS390C Cyanidioschyzon merolae (red alga) cn05170 Cryptococcus neoformans (yeast-like fungus) cgd4_1520 Cryptosporidium parvum (protozoan parasite) CPIJ009916 Culex pipens (mosquito) CPIJ012113 Culex pipens (mosquito) ENSCPOP00000020277 Cavia porcellus (guinea pig) 112251 Chlamidomonas reinhardtii (green alga) RP42963 Caenorhabditis remanei (nematode) ENSCSAVP00000014781 Ciona savignyi (sedentary tunicate) 210368 Capitella spl (polychaete worm) DDB0238376 Dictyostelium discoideum (amoeba) DEHA2G09702g Debaryomyces Hansenii (yeast) 309235 Daphnia pulex (daphnia) 318276 Daphnia pulex (daphnia) ENSDARP00000029422 Danio rerio (zebra fish) ENSECAP00000000379 Equus caballus (horse) XP_649898 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000021781 Gymnopilus aculeatus (mushroom) ENSGALP00000005322 Gallus gallus (chicken) GL50803_3589 Giardia lamblia (flagellated protozoan) 190600 Hypsipyla robusta (cedar shoot borer) ENSP00000338862 Homo sapiens (human) ISCW015304-PA Ixodes scapularis (deer tick) KLLA0E17799g Kluyveromyces lactis (yeast) 205433 Lottia gigantea (owl limpet) LmjF20.1670 Leishmania major (virus) 36786 Monocosta brevicollis (choanoflagellate) ENSMODP00000025500 Monodelphis domestica (gray opossum) ENSMMUP00000000594 Macaca mulatta (rhesus monkey) ENSMUSP00000022855 Mus musculus (house mouse) 23808 Nematostella vectensis (starlet anemone) XP_001604206.1 Nasonia vitripennis (wasp) ENSOANP00000022884 Ornithorynchus anatinus (platypus) ENSORLP00000007414 Oryzias latipes (japanese killifish) LOC_Os02g37870.1 Oryza sativa (asian rice) 25359 Ostreococcus tauri (green alga) PF07_0122 Plasmodium falciparum (protozoal parasite) PHUM006978-PA Pediculus humanus (human body louse) PP01166 Pristionchus pacificus (nematode) 233825 Physcomitrella patens (moss) ENSPPYP00000017190 Pongo pygmaeus (orangutan) 79983 Phytophthora ramorum (sudden oak death pathogen) 109164 Phytophthora sojae (root rot pathogen) 568932 Populus trichocarpa (black cottonwood) ENSPTRP00000028781 Pan troglodytes (chimpanzee) PVX_081770 Plasmodium vivax (protozoal parasite) ENSRNOP00000024285 Rattus norvegicus (norway rat) 5055357 Sorghum bicolor (sorghum) YOL077C Saccharomyces cerevisiae (budding yeast) SPBC800.06 Schizosaccharomyces pombe (fission yeast) XP_788133.2 Strongylocentrotus purpuratus (purple sea urchin) 60181 Trichoplax adhaerens (metazoa) TA05880 Theileria annulata (apicomplexan parasite) XP_970542.1 Tribolium castaneum (red flour beetle) Tc00.1047053511287.90 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000010326 Tetraodon nigroviridis (green spotted pufferfish) TP01_0829 Theileria parva (parasitic protozoan) 33589 Thalassiosira pseudonana (marine diatom) ENSTRUP00000028801 Takifugu rubripes (pufferfish Takifugu) 3831.m01551 Tetrahymena thermophila (ciliate protozoa) 97465.m00183 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000001561 Xenopus tropicalis (frog) YALI0B11880g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV10087 LH22508 ISCW015304 FBgn0068480 FBgn0212582 FBgn0199800 FBgn0184989 FBgn0168917 JGI_V11_318276 JGI_V11_309235 FBgn0076804 FBgn0150330 FBgn0139560 FBgn0123008 FBgn0106459 FBgn0101734 CPIJ012113 CPIJ009916 BGIBMGA009983 ACYPI007566 GB12626 AGAP005365 AAEL015449 AAEL001917 PB21544 PHUM134610 GLEAN_11978
Stocks & Reagents
Stocks Listed in FlyBase ( 7 )
Bloomington	10370 w1118; PBac{PB}CG11583c01124/TM6B, Tb1 36282 w*; PBac{RB}CG11583e01456 P{neoFRT}80B/TM6B, Tb1 36283 w* dlg114 P{FRT(whs)}101/FM7a; PBac{PB}CG11583c01124 P{neoFRT}80B/TM3, Sb1
Harvard	- PBac{PB}CG11583c01124 - PBac{RB}CG11583e01456
VDRC	v34478 w1118; P{GD10836}v34478 v34479 w1118; P{GD10836}v34479/CyO
Genomic Clones ( 1 )
	BACR39O11 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 49 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD22010
Other clones	yak-em_CG11583
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GM12125 GM12787 LD04256 LD04265 LD04505 LD20344 LD20858 LD41143 RE32616 RE49727 RE55249 RE57394 RE60847 RH52414 SD24127
Other clones	45069 103794 Dmel_dig_008949_0620_2218 Dmel_dig_017471_0712_2649 Dmel_neb_006900_0818_2330 Dmel_neb_013504_0859_1452 EC33866 EC36984 EK102105 EK160912 FGM103F12 FGM206G06 RP001008535 RP001008600 RP001008874 RP001008958 RP001015369 RP001015885 RP001016355 RP001017810 RP001018811 RP001021869 RP001022566 RP001031258 RP001033629 RP001035500 RP001041906 RP001044293 RP001044846 RP001052507 RP001053601 RP001055399
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0035524 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 326206
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG11583 CG32253 (FlyBase, 1996-)
Additional comments	Source for merge of CG11583 CG32253 was Swiss-Prot update (date:031020). (FlyBase, 1996-)
Other Comments
	Transiently renamed (CG32253) in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_001038900 RefSeq (Proteins) • NP_001033989 DDBJ / EMBL / GenBank • AAF47877 AAM50776 AY118916 CZ466918 CZ479268 CZ479269 Entrez Gene - A searchable database of RefSeq genes. • 326206 UniProtKB/Swiss-Prot • Q9VZE6
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Brix domain (IPR007109) Anticodon-binding (IPR004154)
Linkouts
	BioGRID - A database of protein and genetic interactions • 77459 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0035524 DroID - A comprehensive database of gene and protein interactions. • FBgn0035524 DRSC - Results from RNAi screens. • FBgn0035524 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035524 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG32253-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0035524 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 326206 InParanoid A subset of ortholog calls from InParanoid. • AAEL001917-PA Aedes aegypti (mosquito) AGAP005365-PA Anopheles gambiae (mosquito) XP_001119973.1 Apis mellifera (honey bee) XP_001951576.1 Acyrthosiphon pisum (pea aphid) At3g15460.1 Arabidopsis thaliana (wall cress) 11789 Batrachochytrium dendrobatidis (chytrid fungus) 57637 Branchiostoma floridae (lancelet) XP_001900907.1 Brugia malayi (roundworm nematode) BGIBMGA009983-PA Bombyx mori (silk worm) ENSBTAP00000025572 Bos taurus (bovine) CAL0003537 Candida albicans (a form of yeast) CN10480 Caenorhabditis brenneri (small nematode) CBP32788 Caenorhabditis briggsae (nematode) CE00268 Caenorhabditis elegans (worm) ENSCAFP00000027733 Canis familiaris (dog) CAGL0I07975g Candida glabrata (haploid yeast) Chro.40174 Cryptosporidium hominis (obligate parasite) ENSCINP00000003437 Ciona intestinalis (sea squirt) JA12670 Caenorhabditis japonica (nematode) CMS390C Cyanidioschyzon merolae (red alga) cn05170 Cryptococcus neoformans (yeast-like fungus) cgd4_1520 Cryptosporidium parvum (protozoan parasite) CPIJ009916 Culex pipens (mosquito) CPIJ012113 Culex pipens (mosquito) ENSCPOP00000020277 Cavia porcellus (guinea pig) 112251 Chlamidomonas reinhardtii (green alga) RP42963 Caenorhabditis remanei (nematode) ENSCSAVP00000014781 Ciona savignyi (sedentary tunicate) 210368 Capitella spl (polychaete worm) DDB0238376 Dictyostelium discoideum (amoeba) DEHA2G09702g Debaryomyces Hansenii (yeast) 309235 Daphnia pulex (daphnia) 318276 Daphnia pulex (daphnia) ENSDARP00000029422 Danio rerio (zebra fish) ENSECAP00000000379 Equus caballus (horse) XP_649898 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000021781 Gymnopilus aculeatus (mushroom) ENSGALP00000005322 Gallus gallus (chicken) GL50803_3589 Giardia lamblia (flagellated protozoan) 190600 Hypsipyla robusta (cedar shoot borer) ENSP00000338862 Homo sapiens (human) ISCW015304-PA Ixodes scapularis (deer tick) KLLA0E17799g Kluyveromyces lactis (yeast) 205433 Lottia gigantea (owl limpet) LmjF20.1670 Leishmania major (virus) 36786 Monocosta brevicollis (choanoflagellate) ENSMODP00000025500 Monodelphis domestica (gray opossum) ENSMMUP00000000594 Macaca mulatta (rhesus monkey) ENSMUSP00000022855 Mus musculus (house mouse) 23808 Nematostella vectensis (starlet anemone) XP_001604206.1 Nasonia vitripennis (wasp) ENSOANP00000022884 Ornithorynchus anatinus (platypus) ENSORLP00000007414 Oryzias latipes (japanese killifish) LOC_Os02g37870.1 Oryza sativa (asian rice) 25359 Ostreococcus tauri (green alga) PF07_0122 Plasmodium falciparum (protozoal parasite) PHUM006978-PA Pediculus humanus (human body louse) PP01166 Pristionchus pacificus (nematode) 233825 Physcomitrella patens (moss) ENSPPYP00000017190 Pongo pygmaeus (orangutan) 79983 Phytophthora ramorum (sudden oak death pathogen) 109164 Phytophthora sojae (root rot pathogen) 568932 Populus trichocarpa (black cottonwood) ENSPTRP00000028781 Pan troglodytes (chimpanzee) PVX_081770 Plasmodium vivax (protozoal parasite) ENSRNOP00000024285 Rattus norvegicus (norway rat) 5055357 Sorghum bicolor (sorghum) YOL077C Saccharomyces cerevisiae (budding yeast) SPBC800.06 Schizosaccharomyces pombe (fission yeast) XP_788133.2 Strongylocentrotus purpuratus (purple sea urchin) 60181 Trichoplax adhaerens (metazoa) TA05880 Theileria annulata (apicomplexan parasite) XP_970542.1 Tribolium castaneum (red flour beetle) Tc00.1047053511287.90 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000010326 Tetraodon nigroviridis (green spotted pufferfish) TP01_0829 Theileria parva (parasitic protozoan) 33589 Thalassiosira pseudonana (marine diatom) ENSTRUP00000028801 Takifugu rubripes (pufferfish Takifugu) 3831.m01551 Tetrahymena thermophila (ciliate protozoa) 97465.m00183 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000001561 Xenopus tropicalis (frog) YALI0B11880g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 326206 modMine - Data generated by the modENCODE project. • FBgn0035524 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV10087 LH22508 ISCW015304 FBgn0068480 FBgn0212582 FBgn0199800 FBgn0184989 FBgn0168917 JGI_V11_318276 JGI_V11_309235 FBgn0076804 FBgn0150330 FBgn0139560 FBgn0123008 FBgn0106459 FBgn0101734 CPIJ012113 CPIJ009916 BGIBMGA009983 ACYPI007566 GB12626 AGAP005365 AAEL015449 AAEL001917 PB21544 PHUM134610 GLEAN_11978
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	CG11583 (Neumüller et al., 2011) CG32253 (Giot et al., 2003, )
Name Synonym
Secondary FlyBase IDs
	FBgn0052253
References ( 18 )
Research paper	Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593 Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi. [FBrf0213621] Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812]
Supplementary material	Neumüller et al., 2011, Cell Stem Cell 8(5): Supplemental Table S1. [FBrf0214431] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Review	Mayer et al., 2001, Trends Biochem. Sci. 26(3): 143--144 The archaeal homolog of the Imp4 protein, a eukaryotic U3 snoRNP component. [FBrf0183186]
Personal communication to FlyBase	Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Luschnig, 2003.12.17, Existence-uncertain genes. Existence-uncertain genes. [FBrf0173248] Mount, 2001.8.14, Intron annotations. Intron annotations. [FBrf0137489]
FlyBase analysis	FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Protein sequence record	Swiss-Prot Project Members, 2003.9.15, UniProtKB: Q9VZE6 Ribosome biogenesis protein Brix homolog. [FBrf0160179]
Computer file	Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. Genomic mapping of Exelixis insertion collection. [FBrf0184340] Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]