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Gene Dmel\CG1316

General Information
Symbol	Dmel\CG1316	Species	D. melanogaster
Name		Annotation symbol	CG1316
Feature type	protein_coding_gene	FlyBase ID	FBgn0035526
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	64A12-64A12	Sequence location	3L:4,283,855..4,286,865 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG1316 (FBgn0035526). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: mRNA binding. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Nucleotide-binding, alpha-beta plait; RNA recognition motif domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval Malpighian tubules, larval fat body, larval/adult salivary gland, adult ovary, adult testis. Comments on Affy2 ProbeSet: ProbeSet 1633022_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG1316. Gene sequence location is 3L:4283855..4286865.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features HFA08304 BKN22467
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 64A12-64A12   Limits computationally determined from genome sequence between P{PZ}l(3)rG166rG166 and P{PZ}sinu06524
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG1316 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG1316-RA FBtr0073233  NM_139630   2218   470
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG1316-PA   FBpp0073089   52.5   470   6.67     NP_647887   AAF47879
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • RNA recognition motif domain (IPR000504) Nucleotide-binding, alpha-beta plait (IPR012677)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA441380   AA540705   AA568014   AE014296 AAF47879   AI389344   AI389583   AI945368   AY231893   BF487360   BF501729   BF506312   BI172033   BI356577   BI486856   BI612755   BI615624   BI617712   BI624448   BI639332   BP549036   BP552559   BP552560   BP555270   BQ102688   BT001728 AAN71483   CL528289   CO288314   CO300318   CO304950   CO309224   CO340311   CZ480907   EC062264   EC077807   EC079995   EC196664   EC206008   EC218978   EC246059   EV579088   GH738792   GH741498   GH741637   GH742017   GH762061   GH764322   GO254370
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VZE4
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0035526    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0035526 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0035526 expression level Developmental Stage   Expression Level embryo 00-02hr    2195 embryo 02-04hr    4311 embryo 04-06hr    10234 embryo 06-08hr    5009 embryo 08-10hr    4355 embryo 10-12hr    3719 embryo 12-14hr    4107 embryo 14-16hr    2984 embryo 16-18hr    2566 embryo 18-20hr    1952 embryo 20-22hr    1417 embryo 22-24hr    1676 larva L1    2468 larva L2    1867 larva L3 12hr old    1531 larva L3 puffstage 1-2    1753 larva L3 puffstage 3-6    2701 larva L3 puffstage 7-9    3134 white prepupae new    2957 white prepupae 12hr    3921 white prepupae 24hr    5182 pupae 2d postWPP    4489 pupae 3d postWPP    2026 pupae 4d postWPP    1414 adult male 01day    2039 adult male 05day    2727 adult male 30day    2817 adult female 01day    1830 adult female 05day    2161 adult female 30day    1991 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2195) embryo 02-04hr  (4311) embryo 04-06hr  (10234) embryo 06-08hr  (5009) embryo 08-10hr  (4355) embryo 10-12hr  (3719) embryo 12-14hr  (4107) embryo 14-16hr  (2984) embryo 16-18hr  (2566) embryo 18-20hr  (1952) embryo 20-22hr  (1417) embryo 22-24hr  (1676) larva L1  (2468) larva L2  (1867) larva L3 12hr old  (1531) larva L3 puffstage 1-2  (1753) larva L3 puffstage 3-6  (2701) larva L3 puffstage 7-9  (3134) white prepupae new  (2957) white prepupae 12hr  (3921) white prepupae 24hr  (5182) pupae 2d postWPP  (4489) pupae 3d postWPP  (2026) pupae 4d postWPP  (1414) adult male 01day  (2039) adult male 05day  (2727) adult male 30day  (2817) adult female 01day  (1830) adult female 05day  (2161) adult female 30day  (1991) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2195) embryo 02-04hr  (4311) embryo 04-06hr  (10234) embryo 06-08hr  (5009) embryo 08-10hr  (4355) embryo 10-12hr  (3719) embryo 12-14hr  (4107) embryo 14-16hr  (2984) embryo 16-18hr  (2566) embryo 18-20hr  (1952) embryo 20-22hr  1417 embryo 22-24hr  (1676) larva L1  (2468) larva L2  (1867) larva L3 12hr old  (1531) larva L3 puffstage 1-2  (1753) larva L3 puffstage 3-6  (2701) larva L3 puffstage 7-9  (3134) white prepupae new  (2957) white prepupae 12hr  (3921) white prepupae 24hr  (5182) pupae 2d postWPP  (4489) pupae 3d postWPP  (2026) pupae 4d postWPP  1414 adult male 01day  (2039) adult male 05day  (2727) adult male 30day  (2817) adult female 01day  (1830) adult female 05day  (2161) adult female 30day  (1991) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2195 embryo 02-04hr    4311 embryo 04-06hr  10234 embryo 06-08hr    5009 embryo 08-10hr    4355 embryo 10-12hr    3719 embryo 12-14hr    4107 embryo 14-16hr    2984 embryo 16-18hr    2566 embryo 18-20hr    1952 embryo 20-22hr    1417 embryo 22-24hr    1676 larva L1    2468 larva L2    1867 larva L3 12hr old    1531 larva L3 puffstage 1-2    1753 larva L3 puffstage 3-6    2701 larva L3 puffstage 7-9    3134 white prepupae new    2957 white prepupae 12hr    3921 white prepupae 24hr    5182 pupae 2d postWPP    4489 pupae 3d postWPP    2026 pupae 4d postWPP    1414 adult male 01day    2039 adult male 05day    2727 adult male 30day    2817 adult female 01day    1830 adult female 05day    2161 adult female 30day    1991 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2195 embryo 02-04hr    4311 embryo 04-06hr    10234 embryo 06-08hr    5009 embryo 08-10hr    4355 embryo 10-12hr    3719 embryo 12-14hr    4107 embryo 14-16hr    2984 embryo 16-18hr    2566 embryo 18-20hr    1952 embryo 20-22hr    1417 embryo 22-24hr    1676 larva L1    2468 larva L2    1867 larva L3 12hr old    1531 larva L3 puffstage 1-2    1753 larva L3 puffstage 3-6    2701 larva L3 puffstage 7-9    3134 white prepupae new    2957 white prepupae 12hr    3921 white prepupae 24hr    5182 pupae 2d postWPP    4489 pupae 3d postWPP    2026 pupae 4d postWPP    1414 adult male 01day    2039 adult male 05day    2727 adult male 30day    2817 adult female 01day    1830 adult female 05day    2161 adult female 30day    1991 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0035526 expression level Developmental Stage   Expression Level embryo 00-02hr    2195 embryo 02-04hr    4311 embryo 04-06hr    10234 embryo 06-08hr    5009 embryo 08-10hr    4355 embryo 10-12hr    3719 embryo 12-14hr    4107 embryo 14-16hr    2984 embryo 16-18hr    2566 embryo 18-20hr    1952 embryo 20-22hr    1417 embryo 22-24hr    1676 larva L1    2468 larva L2    1867 larva L3 12hr old    1531 larva L3 puffstage 1-2    1753 larva L3 puffstage 3-6    2701 larva L3 puffstage 7-9    3134 white prepupae new    2957 white prepupae 12hr    3921 white prepupae 24hr    5182 pupae 2d postWPP    4489 pupae 3d postWPP    2026 pupae 4d postWPP    1414 adult male 01day    2039 adult male 05day    2727 adult male 30day    2817 adult female 01day    1830 adult female 05day    2161 adult female 30day    1991 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2195) embryo 02-04hr  (4311) embryo 04-06hr  (10234) embryo 06-08hr  (5009) embryo 08-10hr  (4355) embryo 10-12hr  (3719) embryo 12-14hr  (4107) embryo 14-16hr  (2984) embryo 16-18hr  (2566) embryo 18-20hr  (1952) embryo 20-22hr  (1417) embryo 22-24hr  (1676) larva L1  (2468) larva L2  (1867) larva L3 12hr old  (1531) larva L3 puffstage 1-2  (1753) larva L3 puffstage 3-6  (2701) larva L3 puffstage 7-9  (3134) white prepupae new  (2957) white prepupae 12hr  (3921) white prepupae 24hr  (5182) pupae 2d postWPP  (4489) pupae 3d postWPP  (2026) pupae 4d postWPP  (1414) adult male 01day  (2039) adult male 05day  (2727) adult male 30day  (2817) adult female 01day  (1830) adult female 05day  (2161) adult female 30day  (1991) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  2195 embryo 02-04hr  (4311) embryo 04-06hr  (10234) embryo 06-08hr  (5009) embryo 08-10hr  (4355) embryo 10-12hr  (3719) embryo 12-14hr  (4107) embryo 14-16hr  (2984) embryo 16-18hr  (2566) embryo 18-20hr  1952 embryo 20-22hr  1417 embryo 22-24hr  1676 larva L1  2468 larva L2  1867 larva L3 12hr old  1531 larva L3 puffstage 1-2  1753 larva L3 puffstage 3-6  (2701) larva L3 puffstage 7-9  (3134) white prepupae new  (2957) white prepupae 12hr  (3921) white prepupae 24hr  (5182) pupae 2d postWPP  (4489) pupae 3d postWPP  2026 pupae 4d postWPP  1414 adult male 01day  2039 adult male 05day  (2727) adult male 30day  (2817) adult female 01day  1830 adult female 05day  2161 adult female 30day  1991 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2195 embryo 02-04hr    4311 embryo 04-06hr  10234 embryo 06-08hr    5009 embryo 08-10hr    4355 embryo 10-12hr    3719 embryo 12-14hr    4107 embryo 14-16hr    2984 embryo 16-18hr    2566 embryo 18-20hr    1952 embryo 20-22hr    1417 embryo 22-24hr    1676 larva L1    2468 larva L2    1867 larva L3 12hr old    1531 larva L3 puffstage 1-2    1753 larva L3 puffstage 3-6    2701 larva L3 puffstage 7-9    3134 white prepupae new    2957 white prepupae 12hr    3921 white prepupae 24hr    5182 pupae 2d postWPP    4489 pupae 3d postWPP    2026 pupae 4d postWPP    1414 adult male 01day    2039 adult male 05day    2727 adult male 30day    2817 adult female 01day    1830 adult female 05day    2161 adult female 30day    1991 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2195 embryo 02-04hr    4311 embryo 04-06hr    10234 embryo 06-08hr    5009 embryo 08-10hr    4355 embryo 10-12hr    3719 embryo 12-14hr    4107 embryo 14-16hr    2984 embryo 16-18hr    2566 embryo 18-20hr    1952 embryo 20-22hr    1417 embryo 22-24hr    1676 larva L1    2468 larva L2    1867 larva L3 12hr old    1531 larva L3 puffstage 1-2    1753 larva L3 puffstage 3-6    2701 larva L3 puffstage 7-9    3134 white prepupae new    2957 white prepupae 12hr    3921 white prepupae 24hr    5182 pupae 2d postWPP    4489 pupae 3d postWPP    2026 pupae 4d postWPP    1414 adult male 01day    2039 adult male 05day    2727 adult male 30day    2817 adult female 01day    1830 adult female 05day    2161 adult female 30day    1991 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0035526    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0035526 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval Malpighian tubules, larval fat body, larval/adult salivary gland, adult ovary, adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0035526 expression level Tissue   Expression Level Larval Central Nervous System    169.6 Larval Midgut    54.9 Larval Hindgut    67.8 Larval Malpighian Tubules    147.1 Larval Fat Body    139.7 Larval Salivary Gland    115.5 Larval Trachea    65.45 Larval Carcass    57.8 Adult Head    88.4 Adult Eye    61.05 Adult Brain    266.6 Adult Thoracic-Abdominal Ganglion    137.4 Adult Crop    133.1 Adult Midgut    92.9 Adult Hindgut    93.4 Adult Malpighian Tubules    57.6 Adult Fat Body    61.3 Adult Salivary Gland    148.1 Adult Heart    46.8 Adult VirginFemale Spermatheca    31.3 Adult InseminatedFemale Spermatheca    31.3 Adult Ovary    147.3 Adult Testis    133.4 Adult Male Accessory Gland    1918.2 Adult Carcass    99.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    169.6 Larval Midgut    54.9 Larval Hindgut    67.8 Larval Malpighian Tubules    147.1 Larval Fat Body    139.7 Larval Salivary Gland    115.5 Larval Trachea    65.45 Larval Carcass    57.8 Adult Head    88.4 Adult Eye    61.05 Adult Brain    266.6 Adult Thoracic-Abdominal Ganglion    137.4 Adult Crop    133.1 Adult Midgut    92.9 Adult Hindgut    93.4 Adult Malpighian Tubules    57.6 Adult Fat Body    61.3 Adult Salivary Gland    148.1 Adult Heart    46.8 Adult VirginFemale Spermatheca    31.3 Adult InseminatedFemale Spermatheca    31.3 Adult Ovary    147.3 Adult Testis    133.4 Adult Male Accessory Gland  (1918.2) Adult Carcass    99.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    169.6 Larval Midgut    54.9 Larval Hindgut    67.8 Larval Malpighian Tubules    147.1 Larval Fat Body    139.7 Larval Salivary Gland    115.5 Larval Trachea    65.45 Larval Carcass    57.8 Adult Head    88.4 Adult Eye    61.05 Adult Brain    266.6 Adult Thoracic-Abdominal Ganglion    137.4 Adult Crop    133.1 Adult Midgut    92.9 Adult Hindgut    93.4 Adult Malpighian Tubules    57.6 Adult Fat Body    61.3 Adult Salivary Gland    148.1 Adult Heart    46.8 Adult VirginFemale Spermatheca    31.3 Adult InseminatedFemale Spermatheca    31.3 Adult Ovary    147.3 Adult Testis    133.4 Adult Male Accessory Gland  (1918.2) Adult Carcass    99.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    169.6 Larval Midgut    54.9 Larval Hindgut    67.8 Larval Malpighian Tubules    147.1 Larval Fat Body    139.7 Larval Salivary Gland    115.5 Larval Trachea    65.45 Larval Carcass    57.8 Adult Head    88.4 Adult Eye    61.05 Adult Brain    266.6 Adult Thoracic-Abdominal Ganglion    137.4 Adult Crop    133.1 Adult Midgut    92.9 Adult Hindgut    93.4 Adult Malpighian Tubules    57.6 Adult Fat Body    61.3 Adult Salivary Gland    148.1 Adult Heart    46.8 Adult VirginFemale Spermatheca    31.3 Adult InseminatedFemale Spermatheca    31.3 Adult Ovary    147.3 Adult Testis    133.4 Adult Male Accessory Gland    1918.2 Adult Carcass    99.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0035526 expression level Tissue   Expression Level Larval Central Nervous System    169.6 Larval Midgut    54.9 Larval Hindgut    67.8 Larval Malpighian Tubules    147.1 Larval Fat Body    139.7 Larval Salivary Gland    115.5 Larval Trachea    65.45 Larval Carcass    57.8 Adult Head    88.4 Adult Eye    61.05 Adult Brain    266.6 Adult Thoracic-Abdominal Ganglion    137.4 Adult Crop    133.1 Adult Midgut    92.9 Adult Hindgut    93.4 Adult Malpighian Tubules    57.6 Adult Fat Body    61.3 Adult Salivary Gland    148.1 Adult Heart    46.8 Adult VirginFemale Spermatheca    31.3 Adult InseminatedFemale Spermatheca    31.3 Adult Ovary    147.3 Adult Testis    133.4 Adult Male Accessory Gland    1918.2 Adult Carcass    99.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    169.6 Larval Midgut    54.9 Larval Hindgut    67.8 Larval Malpighian Tubules    147.1 Larval Fat Body    139.7 Larval Salivary Gland    115.5 Larval Trachea    65.45 Larval Carcass    57.8 Adult Head    88.4 Adult Eye    61.05 Adult Brain    266.6 Adult Thoracic-Abdominal Ganglion    137.4 Adult Crop    133.1 Adult Midgut    92.9 Adult Hindgut    93.4 Adult Malpighian Tubules    57.6 Adult Fat Body    61.3 Adult Salivary Gland    148.1 Adult Heart    46.8 Adult VirginFemale Spermatheca    31.3 Adult InseminatedFemale Spermatheca    31.3 Adult Ovary    147.3 Adult Testis    133.4 Adult Male Accessory Gland  (1918.2) Adult Carcass    99.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    169.6 Larval Midgut    54.9 Larval Hindgut    67.8 Larval Malpighian Tubules    147.1 Larval Fat Body    139.7 Larval Salivary Gland    115.5 Larval Trachea    65.45 Larval Carcass    57.8 Adult Head    88.4 Adult Eye    61.05 Adult Brain    266.6 Adult Thoracic-Abdominal Ganglion    137.4 Adult Crop    133.1 Adult Midgut    92.9 Adult Hindgut    93.4 Adult Malpighian Tubules    57.6 Adult Fat Body    61.3 Adult Salivary Gland    148.1 Adult Heart    46.8 Adult VirginFemale Spermatheca    31.3 Adult InseminatedFemale Spermatheca    31.3 Adult Ovary    147.3 Adult Testis    133.4 Adult Male Accessory Gland  (1918.2) Adult Carcass    99.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    169.6 Larval Midgut    54.9 Larval Hindgut    67.8 Larval Malpighian Tubules    147.1 Larval Fat Body    139.7 Larval Salivary Gland    115.5 Larval Trachea    65.45 Larval Carcass    57.8 Adult Head    88.4 Adult Eye    61.05 Adult Brain    266.6 Adult Thoracic-Abdominal Ganglion    137.4 Adult Crop    133.1 Adult Midgut    92.9 Adult Hindgut    93.4 Adult Malpighian Tubules    57.6 Adult Fat Body    61.3 Adult Salivary Gland    148.1 Adult Heart    46.8 Adult VirginFemale Spermatheca    31.3 Adult InseminatedFemale Spermatheca    31.3 Adult Ovary    147.3 Adult Testis    133.4 Adult Male Accessory Gland    1918.2 Adult Carcass    99.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    88.4   NA  Eye    61.05   NA  Brain    266.6   169.6  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    137.4   NA  Crop    133.1   54.9  Midgut    92.9   67.8  Hindgut    93.4   147.1  Malpighian Tubules    57.6   139.7  Fat Body    61.3   115.5  Salivary Gland    148.1   NA  Heart    46.8   65.45  Trachea    NA   NA  VirginFemale Spermatheca    31.3   NA  InseminatedFemale Spermatheca    31.3   NA  Ovary    147.3   NA  Testis    133.4   NA  Male Accessory Gland    1918.2   57.8  Carcass    99.3 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_30
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035526 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1316-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele semi-lethal | pupal stage, with Scer\GAL4pnr-MD237 CG1316GD7942 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG1316 Class Mutagen Stocks Known lesion CG1316e03141 piggyBac transposase 1 -- CG1316KG10179 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG1316 Class Mutagen Stocks Known lesion CG1316GD7942 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG1316KK102386 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel8098 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD7942} NA P{KK102386} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{SUPor-P}CG1316KG10179 NA PBac{RB}CG1316e03141 NA
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
mRNA binding inferred from sequence or structural similarity (Lasko, 2000) nucleic acid binding inferred from electronic annotation with InterPro:IPR000504 (FlyBase Curators et al., 2004-) nucleotide binding inferred from electronic annotation with InterPro:IPR012677 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG1316 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 64003 DroID - A comprehensive database of gene and protein interactions. • FBgn0035526 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38526
Orthologs
Genome-wide drosophilid orthologs	Dana\GF25059 Dere\GG15216 Dgri\GH15941 Dmoj\GI16592 Dper\GL17872 Dpse\GA12086 Dsec\GM14647 Dsim\GD13832 Dvir\GJ12844 Dwil\GK10557 Dyak\GE21435
Curated drosophilid orthologs	Dpse\GA12086   Dyak\GE21435
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL010665-PA Aedes aegypti (mosquito) AGAP005505-PA Anopheles gambiae (mosquito) XP_395582.2 Apis mellifera (honey bee) XP_001945010.1 Acyrthosiphon pisum (pea aphid) 241504 Branchiostoma floridae (lancelet) BGIBMGA007961-PA Bombyx mori (silk worm) ENSBTAP00000008111 Bos taurus (bovine) ENSCAFP00000020095 Canis familiaris (dog) CPIJ005653 Culex pipens (mosquito) ENSCPOP00000000606 Cavia porcellus (guinea pig) 33898 Capitella spl (polychaete worm) 300090 Daphnia pulex (daphnia) ENSDARP00000087847 Danio rerio (zebra fish) ENSECAP00000014843 Equus caballus (horse) ENSGACP00000015450 Gymnopilus aculeatus (mushroom) ENSGALP00000014967 Gallus gallus (chicken) 66091 Hypsipyla robusta (cedar shoot borer) ENSP00000286070 Homo sapiens (human) 92684 Lottia gigantea (owl limpet) ENSMODP00000012172 Monodelphis domestica (gray opossum) ENSMMUP00000002695 Macaca mulatta (rhesus monkey) ENSMUSP00000040420 Mus musculus (house mouse) 163860 Nematostella vectensis (starlet anemone) XP_001604889.1 Nasonia vitripennis (wasp) ENSOANP00000013750 Ornithorynchus anatinus (platypus) PHUM003877-PA Pediculus humanus (human body louse) ENSPPYP00000014494 Pongo pygmaeus (orangutan) ENSPTRP00000021672 Pan troglodytes (chimpanzee) ENSRNOP00000051270 Rattus norvegicus (norway rat) XP_785181.2 Strongylocentrotus purpuratus (purple sea urchin) 1749 Trichoplax adhaerens (metazoa) XP_970185.1 Tribolium castaneum (red flour beetle) ENSTNIP00000012748 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000013172 Takifugu rubripes (pufferfish Takifugu) 81238.m00184 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000032820 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV16427 LH14368 FBgn0068447 FBgn0212572 FBgn0200079 FBgn0185529 FBgn0169568 JGI_V11_300090 FBgn0072134 FBgn0155475 FBgn0139340 FBgn0123412 FBgn0107468 FBgn0102051 CPIJ005653 BGIBMGA007961 ACYPI002355 GB13945 AGAP005505 AAEL010665 PB23295 PHUM541190 GLEAN_14625
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	16518 y1; P{SUPor-P}CG1316KG10179 ry506/TM3, Sb1 Ser1
Harvard	- PBac{RB}CG1316e03141
VDRC	v105148 P{KK102386}VIE-260B v23851 w1118; P{GD7942}v23851/TM3
Genomic Clones ( 1 )
	BACR39O11 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 41 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE70333
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT08753 AT17260 AT22133 GH20486 GH20796 HL02150 LD16289 LD20482 RE13956 RE42756 RH41709 RH45318 RH48127 RH64011 SD21890
Other clones	50460 57473 158169 bs12b03 CK01.7D.E8 CK01.19C.H4 CK01.86B.F9 CK01.99A.E5 Dmel_dig_003115_0587_1939 EK068221 EK177933 EK246803 EK260715 EP10408 FGM003C06 FGM219D12 FGM234D03 RP01171 RP01191 RP001026156 RP001026876 RP001033985 RP001037786 RP001053694 UUGC0069
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0035526 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38526
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_139630 RefSeq (Proteins) • NP_647887 DDBJ / EMBL / GenBank • AAF47879 AAN71483 AI945368 BI356577 BI486856 BT001728 CL528289 CZ480907 Entrez Gene - A searchable database of RefSeq genes. • 38526 UniProtKB/TrEMBL • Q9VZE4
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • RNA recognition motif domain (IPR000504) Nucleotide-binding, alpha-beta plait (IPR012677)
Linkouts
	BioGRID - A database of protein and genetic interactions • 64003 DroID - A comprehensive database of gene and protein interactions. • FBgn0035526 DRSC - Results from RNAi screens. • FBgn0035526 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035526 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1316-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0035526 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38526 InParanoid A subset of ortholog calls from InParanoid. • AAEL010665-PA Aedes aegypti (mosquito) AGAP005505-PA Anopheles gambiae (mosquito) XP_395582.2 Apis mellifera (honey bee) XP_001945010.1 Acyrthosiphon pisum (pea aphid) 241504 Branchiostoma floridae (lancelet) BGIBMGA007961-PA Bombyx mori (silk worm) ENSBTAP00000008111 Bos taurus (bovine) ENSCAFP00000020095 Canis familiaris (dog) CPIJ005653 Culex pipens (mosquito) ENSCPOP00000000606 Cavia porcellus (guinea pig) 33898 Capitella spl (polychaete worm) 300090 Daphnia pulex (daphnia) ENSDARP00000087847 Danio rerio (zebra fish) ENSECAP00000014843 Equus caballus (horse) ENSGACP00000015450 Gymnopilus aculeatus (mushroom) ENSGALP00000014967 Gallus gallus (chicken) 66091 Hypsipyla robusta (cedar shoot borer) ENSP00000286070 Homo sapiens (human) 92684 Lottia gigantea (owl limpet) ENSMODP00000012172 Monodelphis domestica (gray opossum) ENSMMUP00000002695 Macaca mulatta (rhesus monkey) ENSMUSP00000040420 Mus musculus (house mouse) 163860 Nematostella vectensis (starlet anemone) XP_001604889.1 Nasonia vitripennis (wasp) ENSOANP00000013750 Ornithorynchus anatinus (platypus) PHUM003877-PA Pediculus humanus (human body louse) ENSPPYP00000014494 Pongo pygmaeus (orangutan) ENSPTRP00000021672 Pan troglodytes (chimpanzee) ENSRNOP00000051270 Rattus norvegicus (norway rat) XP_785181.2 Strongylocentrotus purpuratus (purple sea urchin) 1749 Trichoplax adhaerens (metazoa) XP_970185.1 Tribolium castaneum (red flour beetle) ENSTNIP00000012748 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000013172 Takifugu rubripes (pufferfish Takifugu) 81238.m00184 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000032820 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38526 modMine - Data generated by the modENCODE project. • FBgn0035526 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV16427 LH14368 FBgn0068447 FBgn0212572 FBgn0200079 FBgn0185529 FBgn0169568 JGI_V11_300090 FBgn0072134 FBgn0155475 FBgn0139340 FBgn0123412 FBgn0107468 FBgn0102051 CPIJ005653 BGIBMGA007961 ACYPI002355 GB13945 AGAP005505 AAEL010665 PB23295 PHUM541190 GLEAN_14625
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	cg1316 (Lasko, 2000) CG1316 (Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
References ( 17 )
Research paper	Lyamouri et al., 2002, Gene 282(1-2): 199--206 Conservation of gene order, structure and sequence between three closely linked genes in Drosophila melanogaster and Drosophila virilis. [FBrf0144875] Lasko, 2000, J. Cell Biol. 150(2): F51--F56 The Drosophila melanogaster genome: translation factors and RNA binding proteins. [FBrf0129923]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Oliver, 2001.8.16, File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). [FBrf0137492]
FlyBase analysis	FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. Genomic mapping of Exelixis insertion collection. [FBrf0184340] Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]
Curated genome annotation	Lasko, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126679]