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Gene Dmel\CG9953

General Information
Symbol	Dmel\CG9953	Species	D. melanogaster
Name		Annotation symbol	CG9953
Feature type	protein_coding_gene	FlyBase ID	FBgn0035726
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	65D5-65D5	Sequence location	3L:6,962,758..6,964,766 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG9953 (FBgn0035726). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: serine-type carboxypeptidase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: proteolysis. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Peptidase S28. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, larval/adult midgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult female reproductive system, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult central nervous system, adult crop, larval/adult hindgut, larval/adult salivary gland, larval trachea, adult male reproductive system. Comments on Affy2 ProbeSet: ProbeSet 1635070_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG9953. Gene sequence location is 3L:6962758..6964766.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 65D5-65D5   Limits computationally determined from genome sequence between P{lacW}l(3)L4060L4060 and P{PZ}corn04202
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG9953 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG9953-RA FBtr0076898  NM_139810   1814   508
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG9953-PA   FBpp0076608   56.9   508   6.57     NP_648067   AAF50628
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Peptidase S28 (IPR008758)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA141505   AA141506   AA202239   AA202983   AA391634   AA440164   AA440868   AA567283   AA696628   AA735798   AA803354   AA941986   AA990837   AE014296 AAF50628   AI134543   AI134553   AI238032   AI260371   AI297406   AI517388   AI518064   AI543108   AI543646   AI544041   AY070659 AAL48130   BF506342   BG632792   BG636152   BG636682   BG636947   BG637292   BI163325   BI168463   BI172012   BI172021   BI212988   BI214170   BI215219   BI228156   BI228191   BI228341   BI228355   BI228691   BI232693   BI232778   BI235195   BI235559   BI239150   BI353696   BI362467   BI371610   BI371793   BI372641   BI372842   BI374056   BI374874   BI482635   BI486852   BI565625   BI568422   BI570318   BI570490   BI571440   BI573392   BI573393   BI590618   BI590681   BI593245   BI606199   BI608717   BI610359   BI611194   BI616677   BI618076   BI625636   BI626563   BI635028   BI635357   BI635395   BI639079   BZ665717   CK658062   CK658420   CO179461   CO180560   CO185342   CO189314   CO263318   CO277137   CO280365   CO308039   CO308956   CO321984   CO324401   CO324499   CO324585   EC074396   EC080249   EC203840   EC208221   EC209123   EC212118   EC223794   EC226536   EC228821   EC241868   EV579616   EV592046
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VS02 Q8SZM1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   anterior endoderm anlage   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 9 -- 10   anterior endoderm   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic/larval garland cell   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, larval/adult midgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult female reproductive system, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult central nervous system, adult crop, larval/adult hindgut, larval/adult salivary gland, larval trachea, adult male reproductive system. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    623.875 Larval Midgut    1455.3 Larval Hindgut    493.8 Larval Malpighian Tubules    1360.6 Larval Fat Body    1433.9 Larval Salivary Gland    322.1 Larval Trachea    483.325 Larval Carcass    744.15 Adult Head    615.5 Adult Eye    1095.725 Adult Brain    416 Adult Thoracic-Abdominal Ganglion    493.6 Adult Crop    255.2 Adult Midgut    637.7 Adult Hindgut    427.7 Adult Malpighian Tubules    548.5 Adult Fat Body    1435.8 Adult Salivary Gland    374.3 Adult Heart    3314.2 Adult VirginFemale Spermatheca    1075 Adult InseminatedFemale Spermatheca    637.8 Adult Ovary    669.5 Adult Testis    203.2 Adult Male Accessory Gland    377.2 Adult Carcass    1075.2 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (623.875) Larval Midgut  (1455.3) Larval Hindgut    493.8 Larval Malpighian Tubules  (1360.6) Larval Fat Body  (1433.9) Larval Salivary Gland    322.1 Larval Trachea    483.325 Larval Carcass  (744.15) Adult Head  (615.5) Adult Eye  (1095.725) Adult Brain    416 Adult Thoracic-Abdominal Ganglion    493.6 Adult Crop    255.2 Adult Midgut  (637.7) Adult Hindgut    427.7 Adult Malpighian Tubules  (548.5) Adult Fat Body  (1435.8) Adult Salivary Gland    374.3 Adult Heart  (3314.2) Adult VirginFemale Spermatheca  (1075) Adult InseminatedFemale Spermatheca  (637.8) Adult Ovary  (669.5) Adult Testis    203.2 Adult Male Accessory Gland    377.2 Adult Carcass  (1075.2) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    623.875 Larval Midgut  (1455.3) Larval Hindgut    493.8 Larval Malpighian Tubules  (1360.6) Larval Fat Body  (1433.9) Larval Salivary Gland    322.1 Larval Trachea    483.325 Larval Carcass    744.15 Adult Head    615.5 Adult Eye  (1095.725) Adult Brain    416 Adult Thoracic-Abdominal Ganglion    493.6 Adult Crop    255.2 Adult Midgut    637.7 Adult Hindgut    427.7 Adult Malpighian Tubules    548.5 Adult Fat Body  (1435.8) Adult Salivary Gland    374.3 Adult Heart  (3314.2) Adult VirginFemale Spermatheca  1075 Adult InseminatedFemale Spermatheca    637.8 Adult Ovary    669.5 Adult Testis    203.2 Adult Male Accessory Gland    377.2 Adult Carcass  1075.2 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    623.875 Larval Midgut    1455.3 Larval Hindgut    493.8 Larval Malpighian Tubules    1360.6 Larval Fat Body    1433.9 Larval Salivary Gland    322.1 Larval Trachea    483.325 Larval Carcass    744.15 Adult Head    615.5 Adult Eye    1095.725 Adult Brain    416 Adult Thoracic-Abdominal Ganglion    493.6 Adult Crop    255.2 Adult Midgut    637.7 Adult Hindgut    427.7 Adult Malpighian Tubules    548.5 Adult Fat Body    1435.8 Adult Salivary Gland    374.3 Adult Heart    3314.2 Adult VirginFemale Spermatheca    1075 Adult InseminatedFemale Spermatheca    637.8 Adult Ovary    669.5 Adult Testis    203.2 Adult Male Accessory Gland    377.2 Adult Carcass    1075.2 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    623.875 Larval Midgut    1455.3 Larval Hindgut    493.8 Larval Malpighian Tubules    1360.6 Larval Fat Body    1433.9 Larval Salivary Gland    322.1 Larval Trachea    483.325 Larval Carcass    744.15 Adult Head    615.5 Adult Eye    1095.725 Adult Brain    416 Adult Thoracic-Abdominal Ganglion    493.6 Adult Crop    255.2 Adult Midgut    637.7 Adult Hindgut    427.7 Adult Malpighian Tubules    548.5 Adult Fat Body    1435.8 Adult Salivary Gland    374.3 Adult Heart    3314.2 Adult VirginFemale Spermatheca    1075 Adult InseminatedFemale Spermatheca    637.8 Adult Ovary    669.5 Adult Testis    203.2 Adult Male Accessory Gland    377.2 Adult Carcass    1075.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  623.875 Larval Midgut  (1455.3) Larval Hindgut    493.8 Larval Malpighian Tubules  (1360.6) Larval Fat Body  (1433.9) Larval Salivary Gland    322.1 Larval Trachea    483.325 Larval Carcass  744.15 Adult Head  615.5 Adult Eye  (1095.725) Adult Brain    416 Adult Thoracic-Abdominal Ganglion    493.6 Adult Crop    255.2 Adult Midgut  637.7 Adult Hindgut    427.7 Adult Malpighian Tubules  548.5 Adult Fat Body  (1435.8) Adult Salivary Gland    374.3 Adult Heart  (3314.2) Adult VirginFemale Spermatheca  (1075) Adult InseminatedFemale Spermatheca  637.8 Adult Ovary  669.5 Adult Testis    203.2 Adult Male Accessory Gland    377.2 Adult Carcass  (1075.2) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    623.875 Larval Midgut  1455.3 Larval Hindgut    493.8 Larval Malpighian Tubules  1360.6 Larval Fat Body  1433.9 Larval Salivary Gland    322.1 Larval Trachea    483.325 Larval Carcass    744.15 Adult Head    615.5 Adult Eye  1095.725 Adult Brain    416 Adult Thoracic-Abdominal Ganglion    493.6 Adult Crop    255.2 Adult Midgut    637.7 Adult Hindgut    427.7 Adult Malpighian Tubules    548.5 Adult Fat Body  1435.8 Adult Salivary Gland    374.3 Adult Heart  (3314.2) Adult VirginFemale Spermatheca  1075 Adult InseminatedFemale Spermatheca    637.8 Adult Ovary    669.5 Adult Testis    203.2 Adult Male Accessory Gland    377.2 Adult Carcass  1075.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    623.875 Larval Midgut    1455.3 Larval Hindgut    493.8 Larval Malpighian Tubules    1360.6 Larval Fat Body    1433.9 Larval Salivary Gland    322.1 Larval Trachea    483.325 Larval Carcass    744.15 Adult Head    615.5 Adult Eye    1095.725 Adult Brain    416 Adult Thoracic-Abdominal Ganglion    493.6 Adult Crop    255.2 Adult Midgut    637.7 Adult Hindgut    427.7 Adult Malpighian Tubules    548.5 Adult Fat Body    1435.8 Adult Salivary Gland    374.3 Adult Heart    3314.2 Adult VirginFemale Spermatheca    1075 Adult InseminatedFemale Spermatheca    637.8 Adult Ovary    669.5 Adult Testis    203.2 Adult Male Accessory Gland    377.2 Adult Carcass    1075.2 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    615.5   NA  Eye    1095.725   NA  Brain    416   623.875  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    493.6   NA  Crop    255.2   1455.3  Midgut    637.7   493.8  Hindgut    427.7   1360.6  Malpighian Tubules    548.5   1433.9  Fat Body    1435.8   322.1  Salivary Gland    374.3   NA  Heart    3314.2   483.325  Trachea    NA   NA  VirginFemale Spermatheca    1075   NA  InseminatedFemale Spermatheca    637.8   NA  Ovary    669.5   NA  Testis    203.2   NA  Male Accessory Gland    377.2   744.15  Carcass    1075.2 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    37 central nervous system, pupae P8    32 head, virgin 1-day female    36 head, virgin 4-day female    34 head, virgin 20-day female    52 head, mated 1-day female    32 head, mated 4-day female    27 head, mated 20-day female    40 head, mated 1-day male    53 head, mated 4-day male    46 head, mated 20-day male    58 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    70 digestive system, 1-day adult    23 digestive system, 4-day adult    18 digestive system, 20-day adult    24 fat body, larvae L3 wandering    32 fat body, white prepupae    16 fat body, pupae P8    43 carcass, larvae L3 wandering    36 carcass, 1-day adult    32 carcass, 4-day adult    33 carcass, 20-day adult    45 ovary, virgin 4-day female    76 ovary, mated 4-day female    67 testis, mated 4-day male    29 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (31) central nervous system, larvae L3  (37) central nervous system, pupae P8  (32) head, virgin 1-day female  (36) head, virgin 4-day female  (34) head, virgin 20-day female  (52) head, mated 1-day female  (32) head, mated 4-day female  (27) head, mated 20-day female  (40) head, mated 1-day male  (53) head, mated 4-day male  (46) head, mated 20-day male  (58) salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering  (70) digestive system, 1-day adult    23 digestive system, 4-day adult    18 digestive system, 20-day adult    24 fat body, larvae L3 wandering  (32) fat body, white prepupae    16 fat body, pupae P8  (43) carcass, larvae L3 wandering  (36) carcass, 1-day adult  (32) carcass, 4-day adult  (33) carcass, 20-day adult  (45) ovary, virgin 4-day female  (76) ovary, mated 4-day female  (67) testis, mated 4-day male  (29) accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    37 central nervous system, pupae P8    32 head, virgin 1-day female    36 head, virgin 4-day female    34 head, virgin 20-day female    52 head, mated 1-day female    32 head, mated 4-day female    27 head, mated 20-day female    40 head, mated 1-day male    53 head, mated 4-day male    46 head, mated 20-day male    58 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    70 digestive system, 1-day adult    23 digestive system, 4-day adult    18 digestive system, 20-day adult    24 fat body, larvae L3 wandering    32 fat body, white prepupae    16 fat body, pupae P8    43 carcass, larvae L3 wandering    36 carcass, 1-day adult    32 carcass, 4-day adult    33 carcass, 20-day adult    45 ovary, virgin 4-day female    76 ovary, mated 4-day female    67 testis, mated 4-day male    29 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    37 central nervous system, pupae P8    32 head, virgin 1-day female    36 head, virgin 4-day female    34 head, virgin 20-day female    52 head, mated 1-day female    32 head, mated 4-day female    27 head, mated 20-day female    40 head, mated 1-day male    53 head, mated 4-day male    46 head, mated 20-day male    58 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    70 digestive system, 1-day adult    23 digestive system, 4-day adult    18 digestive system, 20-day adult    24 fat body, larvae L3 wandering    32 fat body, white prepupae    16 fat body, pupae P8    43 carcass, larvae L3 wandering    36 carcass, 1-day adult    32 carcass, 4-day adult    33 carcass, 20-day adult    45 ovary, virgin 4-day female    76 ovary, mated 4-day female    67 testis, mated 4-day male    29 accessory gland, mated 4-day male    14 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    37 central nervous system, pupae P8    32 head, virgin 1-day female    36 head, virgin 4-day female    34 head, virgin 20-day female    52 head, mated 1-day female    32 head, mated 4-day female    27 head, mated 20-day female    40 head, mated 1-day male    53 head, mated 4-day male    46 head, mated 20-day male    58 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    70 digestive system, 1-day adult    23 digestive system, 4-day adult    18 digestive system, 20-day adult    24 fat body, larvae L3 wandering    32 fat body, white prepupae    16 fat body, pupae P8    43 carcass, larvae L3 wandering    36 carcass, 1-day adult    32 carcass, 4-day adult    33 carcass, 20-day adult    45 ovary, virgin 4-day female    76 ovary, mated 4-day female    67 testis, mated 4-day male    29 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  31 central nervous system, larvae L3  (37) central nervous system, pupae P8  32 head, virgin 1-day female  (36) head, virgin 4-day female  (34) head, virgin 20-day female  (52) head, mated 1-day female  32 head, mated 4-day female  27 head, mated 20-day female  (40) head, mated 1-day male  (53) head, mated 4-day male  (46) head, mated 20-day male  (58) salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering  (70) digestive system, 1-day adult    23 digestive system, 4-day adult    18 digestive system, 20-day adult    24 fat body, larvae L3 wandering  32 fat body, white prepupae    16 fat body, pupae P8  (43) carcass, larvae L3 wandering  (36) carcass, 1-day adult  32 carcass, 4-day adult  (33) carcass, 20-day adult  (45) ovary, virgin 4-day female  (76) ovary, mated 4-day female  (67) testis, mated 4-day male  29 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    37 central nervous system, pupae P8    32 head, virgin 1-day female    36 head, virgin 4-day female    34 head, virgin 20-day female    52 head, mated 1-day female    32 head, mated 4-day female    27 head, mated 20-day female    40 head, mated 1-day male    53 head, mated 4-day male    46 head, mated 20-day male    58 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    70 digestive system, 1-day adult    23 digestive system, 4-day adult    18 digestive system, 20-day adult    24 fat body, larvae L3 wandering    32 fat body, white prepupae    16 fat body, pupae P8    43 carcass, larvae L3 wandering    36 carcass, 1-day adult    32 carcass, 4-day adult    33 carcass, 20-day adult    45 ovary, virgin 4-day female    76 ovary, mated 4-day female    67 testis, mated 4-day male    29 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    37 central nervous system, pupae P8    32 head, virgin 1-day female    36 head, virgin 4-day female    34 head, virgin 20-day female    52 head, mated 1-day female    32 head, mated 4-day female    27 head, mated 20-day female    40 head, mated 1-day male    53 head, mated 4-day male    46 head, mated 20-day male    58 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    70 digestive system, 1-day adult    23 digestive system, 4-day adult    18 digestive system, 20-day adult    24 fat body, larvae L3 wandering    32 fat body, white prepupae    16 fat body, pupae P8    43 carcass, larvae L3 wandering    36 carcass, 1-day adult    32 carcass, 4-day adult    33 carcass, 20-day adult    45 ovary, virgin 4-day female    76 ovary, mated 4-day female    67 testis, mated 4-day male    29 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    158 embryo 02-04hr    180 embryo 04-06hr    148 embryo 06-08hr    42 embryo 08-10hr    25 embryo 10-12hr    14 embryo 12-14hr    13 embryo 14-16hr    12 embryo 16-18hr    9 embryo 18-20hr    7 embryo 20-22hr    4 embryo 22-24hr    6 larva L1    11 larva L2    27 larva L3 12hr old    37 larva L3 puffstage 1-2    87 larva L3 puffstage 3-6    86 larva L3 puffstage 7-9    67 white prepupae new    54 white prepupae 12hr    44 white prepupae 24hr    81 pupae 2d postWPP    75 pupae 3d postWPP    65 pupae 4d postWPP    94 adult male 01day    87 adult male 05day    68 adult male 30day    52 adult female 01day    134 adult female 05day    160 adult female 30day    150 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (158) embryo 02-04hr  (180) embryo 04-06hr  (148) embryo 06-08hr  (42) embryo 08-10hr    25 embryo 10-12hr    14 embryo 12-14hr    13 embryo 14-16hr    12 embryo 16-18hr    9 embryo 18-20hr    7 embryo 20-22hr    4 embryo 22-24hr    6 larva L1    11 larva L2  (27) larva L3 12hr old  (37) larva L3 puffstage 1-2  (87) larva L3 puffstage 3-6  (86) larva L3 puffstage 7-9  (67) white prepupae new  (54) white prepupae 12hr  (44) white prepupae 24hr  (81) pupae 2d postWPP  (75) pupae 3d postWPP  (65) pupae 4d postWPP  (94) adult male 01day  (87) adult male 05day  (68) adult male 30day  (52) adult female 01day  (134) adult female 05day  (160) adult female 30day  (150) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (158) embryo 02-04hr  (180) embryo 04-06hr  (148) embryo 06-08hr    42 embryo 08-10hr    25 embryo 10-12hr    14 embryo 12-14hr    13 embryo 14-16hr    12 embryo 16-18hr    9 embryo 18-20hr    7 embryo 20-22hr    4 embryo 22-24hr    6 larva L1    11 larva L2    27 larva L3 12hr old    37 larva L3 puffstage 1-2    87 larva L3 puffstage 3-6    86 larva L3 puffstage 7-9    67 white prepupae new    54 white prepupae 12hr    44 white prepupae 24hr    81 pupae 2d postWPP    75 pupae 3d postWPP    65 pupae 4d postWPP    94 adult male 01day    87 adult male 05day    68 adult male 30day    52 adult female 01day  (134) adult female 05day  (160) adult female 30day  (150) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    158 embryo 02-04hr    180 embryo 04-06hr    148 embryo 06-08hr    42 embryo 08-10hr    25 embryo 10-12hr    14 embryo 12-14hr    13 embryo 14-16hr    12 embryo 16-18hr    9 embryo 18-20hr    7 embryo 20-22hr    4 embryo 22-24hr    6 larva L1    11 larva L2    27 larva L3 12hr old    37 larva L3 puffstage 1-2    87 larva L3 puffstage 3-6    86 larva L3 puffstage 7-9    67 white prepupae new    54 white prepupae 12hr    44 white prepupae 24hr    81 pupae 2d postWPP    75 pupae 3d postWPP    65 pupae 4d postWPP    94 adult male 01day    87 adult male 05day    68 adult male 30day    52 adult female 01day    134 adult female 05day    160 adult female 30day    150 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    158 embryo 02-04hr    180 embryo 04-06hr    148 embryo 06-08hr    42 embryo 08-10hr    25 embryo 10-12hr    14 embryo 12-14hr    13 embryo 14-16hr    12 embryo 16-18hr    9 embryo 18-20hr    7 embryo 20-22hr    4 embryo 22-24hr    6 larva L1    11 larva L2    27 larva L3 12hr old    37 larva L3 puffstage 1-2    87 larva L3 puffstage 3-6    86 larva L3 puffstage 7-9    67 white prepupae new    54 white prepupae 12hr    44 white prepupae 24hr    81 pupae 2d postWPP    75 pupae 3d postWPP    65 pupae 4d postWPP    94 adult male 01day    87 adult male 05day    68 adult male 30day    52 adult female 01day    134 adult female 05day    160 adult female 30day    150 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (158) embryo 02-04hr  (180) embryo 04-06hr  (148) embryo 06-08hr  (42) embryo 08-10hr    25 embryo 10-12hr    14 embryo 12-14hr    13 embryo 14-16hr    12 embryo 16-18hr    9 embryo 18-20hr    7 embryo 20-22hr    4 embryo 22-24hr    6 larva L1    11 larva L2  27 larva L3 12hr old  (37) larva L3 puffstage 1-2  (87) larva L3 puffstage 3-6  (86) larva L3 puffstage 7-9  (67) white prepupae new  (54) white prepupae 12hr  (44) white prepupae 24hr  (81) pupae 2d postWPP  (75) pupae 3d postWPP  (65) pupae 4d postWPP  (94) adult male 01day  (87) adult male 05day  (68) adult male 30day  (52) adult female 01day  (134) adult female 05day  (160) adult female 30day  (150) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (158) embryo 02-04hr  (180) embryo 04-06hr  (148) embryo 06-08hr    42 embryo 08-10hr    25 embryo 10-12hr    14 embryo 12-14hr    13 embryo 14-16hr    12 embryo 16-18hr    9 embryo 18-20hr    7 embryo 20-22hr    4 embryo 22-24hr    6 larva L1    11 larva L2    27 larva L3 12hr old    37 larva L3 puffstage 1-2    87 larva L3 puffstage 3-6    86 larva L3 puffstage 7-9    67 white prepupae new    54 white prepupae 12hr    44 white prepupae 24hr    81 pupae 2d postWPP    75 pupae 3d postWPP    65 pupae 4d postWPP    94 adult male 01day    87 adult male 05day    68 adult male 30day    52 adult female 01day  134 adult female 05day  (160) adult female 30day  (150) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    158 embryo 02-04hr    180 embryo 04-06hr    148 embryo 06-08hr    42 embryo 08-10hr    25 embryo 10-12hr    14 embryo 12-14hr    13 embryo 14-16hr    12 embryo 16-18hr    9 embryo 18-20hr    7 embryo 20-22hr    4 embryo 22-24hr    6 larva L1    11 larva L2    27 larva L3 12hr old    37 larva L3 puffstage 1-2    87 larva L3 puffstage 3-6    86 larva L3 puffstage 7-9    67 white prepupae new    54 white prepupae 12hr    44 white prepupae 24hr    81 pupae 2d postWPP    75 pupae 3d postWPP    65 pupae 4d postWPP    94 adult male 01day    87 adult male 05day    68 adult male 30day    52 adult female 01day    134 adult female 05day    160 adult female 30day    150 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    108 Schneider line 2 Sg4    53 embryonic 1182-4H    78 embryonic GM2    52 embryonic Kc167    41 embryonic S1    84 embryonic S3    63 leg disc CME L1    47 wing disc CME-W2    96 wing disc ML-DmD8    50 wing disc ML-DmD9    73 wing disc ML-DmD16-c3    36 wing disc ML-DmD21    27 wing disc ML-DmD32    27 haltere disc ML-DmD17-c3    72 eye-antennal disc ML-DmD11    67 antennal disc ML-DmD20-c5    103 mixed discs ML-DmD4-c1    37 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    81 tumorous blood cells mbn2    160 ovary fGS/OSS    30 ovary OSC    30 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (108) Schneider line 2 Sg4  (53) embryonic 1182-4H  (78) embryonic GM2  (52) embryonic Kc167  (41) embryonic S1  (84) embryonic S3  (63) leg disc CME L1  (47) wing disc CME-W2  (96) wing disc ML-DmD8  (50) wing disc ML-DmD9  (73) wing disc ML-DmD16-c3  (36) wing disc ML-DmD21  (27) wing disc ML-DmD32  (27) haltere disc ML-DmD17-c3  (72) eye-antennal disc ML-DmD11  (67) antennal disc ML-DmD20-c5  (103) mixed discs ML-DmD4-c1  (37) CNS ML-DmBG1-c1  (71) CNS ML-DmBG2-c2  (81) tumorous blood cells mbn2  (160) ovary fGS/OSS  (30) ovary OSC  (30) ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (108) Schneider line 2 Sg4    53 embryonic 1182-4H    78 embryonic GM2    52 embryonic Kc167    41 embryonic S1    84 embryonic S3    63 leg disc CME L1    47 wing disc CME-W2    96 wing disc ML-DmD8    50 wing disc ML-DmD9    73 wing disc ML-DmD16-c3    36 wing disc ML-DmD21    27 wing disc ML-DmD32    27 haltere disc ML-DmD17-c3    72 eye-antennal disc ML-DmD11    67 antennal disc ML-DmD20-c5  103 mixed discs ML-DmD4-c1    37 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    81 tumorous blood cells mbn2  (160) ovary fGS/OSS    30 ovary OSC    30 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    108 Schneider line 2 Sg4    53 embryonic 1182-4H    78 embryonic GM2    52 embryonic Kc167    41 embryonic S1    84 embryonic S3    63 leg disc CME L1    47 wing disc CME-W2    96 wing disc ML-DmD8    50 wing disc ML-DmD9    73 wing disc ML-DmD16-c3    36 wing disc ML-DmD21    27 wing disc ML-DmD32    27 haltere disc ML-DmD17-c3    72 eye-antennal disc ML-DmD11    67 antennal disc ML-DmD20-c5    103 mixed discs ML-DmD4-c1    37 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    81 tumorous blood cells mbn2    160 ovary fGS/OSS    30 ovary OSC    30 ovary OSS    20 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    108 Schneider line 2 Sg4    53 embryonic 1182-4H    78 embryonic GM2    52 embryonic Kc167    41 embryonic S1    84 embryonic S3    63 leg disc CME L1    47 wing disc CME-W2    96 wing disc ML-DmD8    50 wing disc ML-DmD9    73 wing disc ML-DmD16-c3    36 wing disc ML-DmD21    27 wing disc ML-DmD32    27 haltere disc ML-DmD17-c3    72 eye-antennal disc ML-DmD11    67 antennal disc ML-DmD20-c5    103 mixed discs ML-DmD4-c1    37 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    81 tumorous blood cells mbn2    160 ovary fGS/OSS    30 ovary OSC    30 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (108) Schneider line 2 Sg4  (53) embryonic 1182-4H  (78) embryonic GM2  (52) embryonic Kc167  (41) embryonic S1  (84) embryonic S3  (63) leg disc CME L1  (47) wing disc CME-W2  (96) wing disc ML-DmD8  (50) wing disc ML-DmD9  (73) wing disc ML-DmD16-c3  (36) wing disc ML-DmD21  27 wing disc ML-DmD32  27 haltere disc ML-DmD17-c3  (72) eye-antennal disc ML-DmD11  (67) antennal disc ML-DmD20-c5  (103) mixed discs ML-DmD4-c1  (37) CNS ML-DmBG1-c1  (71) CNS ML-DmBG2-c2  (81) tumorous blood cells mbn2  (160) ovary fGS/OSS  30 ovary OSC  30 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  108 Schneider line 2 Sg4    53 embryonic 1182-4H    78 embryonic GM2    52 embryonic Kc167    41 embryonic S1    84 embryonic S3    63 leg disc CME L1    47 wing disc CME-W2    96 wing disc ML-DmD8    50 wing disc ML-DmD9    73 wing disc ML-DmD16-c3    36 wing disc ML-DmD21    27 wing disc ML-DmD32    27 haltere disc ML-DmD17-c3    72 eye-antennal disc ML-DmD11    67 antennal disc ML-DmD20-c5  103 mixed discs ML-DmD4-c1    37 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    81 tumorous blood cells mbn2  (160) ovary fGS/OSS    30 ovary OSC    30 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    108 Schneider line 2 Sg4    53 embryonic 1182-4H    78 embryonic GM2    52 embryonic Kc167    41 embryonic S1    84 embryonic S3    63 leg disc CME L1    47 wing disc CME-W2    96 wing disc ML-DmD8    50 wing disc ML-DmD9    73 wing disc ML-DmD16-c3    36 wing disc ML-DmD21    27 wing disc ML-DmD32    27 haltere disc ML-DmD17-c3    72 eye-antennal disc ML-DmD11    67 antennal disc ML-DmD20-c5    103 mixed discs ML-DmD4-c1    37 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    81 tumorous blood cells mbn2    160 ovary fGS/OSS    30 ovary OSC    30 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    19 heat shock, 4-day adult    46 Cadmium 50 mM 6 hrs, larvae L3    45 Cadmium 50 mM 12 hrs, larvae L3    62 Cadmium 50 mM 48 hrs, 4-day adult    42 Cadmium 100 mM 48 hrs, 4-day adult    34 Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    21 Zinc 5 mM 12 hrs, larvae L3    17 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    66 Ethanol 5% 3 hrs, larvae L3    39 Ethanol 10% 3 hrs, larvae L3    34 Caffeine 1.5 mg/ml 4 hrs, larvae L3    49 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    49 Paraquat 10 mM 48 hrs, 4-day adult    64 Rotenone 2 μg 12 hrs, larvae L3    51 Rotenone 8 μg 12 hrs, larvae L3    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    19 heat shock, 4-day adult  (46) Cadmium 50 mM 6 hrs, larvae L3  (45) Cadmium 50 mM 12 hrs, larvae L3  (62) Cadmium 50 mM 48 hrs, 4-day adult  (42) Cadmium 100 mM 48 hrs, 4-day adult  (34) Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    21 Zinc 5 mM 12 hrs, larvae L3    17 Zinc 4.5 mM 48 hrs, 4-day adult  26 Ethanol 2.5% 3 hrs, larvae L3  (66) Ethanol 5% 3 hrs, larvae L3  (39) Ethanol 10% 3 hrs, larvae L3  (34) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (49) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (41) Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult  (49) Paraquat 10 mM 48 hrs, 4-day adult  (64) Rotenone 2 μg 12 hrs, larvae L3  (51) Rotenone 8 μg 12 hrs, larvae L3  (29) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    19 heat shock, 4-day adult    46 Cadmium 50 mM 6 hrs, larvae L3    45 Cadmium 50 mM 12 hrs, larvae L3    62 Cadmium 50 mM 48 hrs, 4-day adult    42 Cadmium 100 mM 48 hrs, 4-day adult    34 Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    21 Zinc 5 mM 12 hrs, larvae L3    17 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    66 Ethanol 5% 3 hrs, larvae L3    39 Ethanol 10% 3 hrs, larvae L3    34 Caffeine 1.5 mg/ml 4 hrs, larvae L3    49 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    49 Paraquat 10 mM 48 hrs, 4-day adult    64 Rotenone 2 μg 12 hrs, larvae L3    51 Rotenone 8 μg 12 hrs, larvae L3    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    19 heat shock, 4-day adult    46 Cadmium 50 mM 6 hrs, larvae L3    45 Cadmium 50 mM 12 hrs, larvae L3    62 Cadmium 50 mM 48 hrs, 4-day adult    42 Cadmium 100 mM 48 hrs, 4-day adult    34 Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    21 Zinc 5 mM 12 hrs, larvae L3    17 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    66 Ethanol 5% 3 hrs, larvae L3    39 Ethanol 10% 3 hrs, larvae L3    34 Caffeine 1.5 mg/ml 4 hrs, larvae L3    49 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    49 Paraquat 10 mM 48 hrs, 4-day adult    64 Rotenone 2 μg 12 hrs, larvae L3    51 Rotenone 8 μg 12 hrs, larvae L3    29 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    19 heat shock, 4-day adult    46 Cadmium 50 mM 6 hrs, larvae L3    45 Cadmium 50 mM 12 hrs, larvae L3    62 Cadmium 50 mM 48 hrs, 4-day adult    42 Cadmium 100 mM 48 hrs, 4-day adult    34 Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    21 Zinc 5 mM 12 hrs, larvae L3    17 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    66 Ethanol 5% 3 hrs, larvae L3    39 Ethanol 10% 3 hrs, larvae L3    34 Caffeine 1.5 mg/ml 4 hrs, larvae L3    49 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    49 Paraquat 10 mM 48 hrs, 4-day adult    64 Rotenone 2 μg 12 hrs, larvae L3    51 Rotenone 8 μg 12 hrs, larvae L3    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    19 heat shock, 4-day adult  (46) Cadmium 50 mM 6 hrs, larvae L3  (45) Cadmium 50 mM 12 hrs, larvae L3  (62) Cadmium 50 mM 48 hrs, 4-day adult  (42) Cadmium 100 mM 48 hrs, 4-day adult  (34) Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    21 Zinc 5 mM 12 hrs, larvae L3    17 Zinc 4.5 mM 48 hrs, 4-day adult  26 Ethanol 2.5% 3 hrs, larvae L3  (66) Ethanol 5% 3 hrs, larvae L3  (39) Ethanol 10% 3 hrs, larvae L3  (34) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (49) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (41) Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult  (49) Paraquat 10 mM 48 hrs, 4-day adult  (64) Rotenone 2 μg 12 hrs, larvae L3  (51) Rotenone 8 μg 12 hrs, larvae L3  29 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    19 heat shock, 4-day adult    46 Cadmium 50 mM 6 hrs, larvae L3    45 Cadmium 50 mM 12 hrs, larvae L3    62 Cadmium 50 mM 48 hrs, 4-day adult    42 Cadmium 100 mM 48 hrs, 4-day adult    34 Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    21 Zinc 5 mM 12 hrs, larvae L3    17 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    66 Ethanol 5% 3 hrs, larvae L3    39 Ethanol 10% 3 hrs, larvae L3    34 Caffeine 1.5 mg/ml 4 hrs, larvae L3    49 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    49 Paraquat 10 mM 48 hrs, 4-day adult    64 Rotenone 2 μg 12 hrs, larvae L3    51 Rotenone 8 μg 12 hrs, larvae L3    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    19 heat shock, 4-day adult    46 Cadmium 50 mM 6 hrs, larvae L3    45 Cadmium 50 mM 12 hrs, larvae L3    62 Cadmium 50 mM 48 hrs, 4-day adult    42 Cadmium 100 mM 48 hrs, 4-day adult    34 Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    21 Zinc 5 mM 12 hrs, larvae L3    17 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    66 Ethanol 5% 3 hrs, larvae L3    39 Ethanol 10% 3 hrs, larvae L3    34 Caffeine 1.5 mg/ml 4 hrs, larvae L3    49 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    49 Paraquat 10 mM 48 hrs, 4-day adult    64 Rotenone 2 μg 12 hrs, larvae L3    51 Rotenone 8 μg 12 hrs, larvae L3    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_02
External Data & Images
Linkouts	BDGP expression data • RH04336 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035726 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9953-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG9953 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG9953GD2342 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG9953 Class Mutagen Stocks Known lesion CG9953KG09912 P-element activity 1 -- CG9953P20 0 Yes
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG9953 Class Mutagen Stocks Known lesion CG9953GD2342 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG9953NIG.9953R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Partially disrupted in	Df(3L)G-iα65AP20 (Yu et al., 2003)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD2342} NA P{NIG.9953R} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{SUPor-P}CG9953KG09912 NA
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
serine-type carboxypeptidase activity inferred from sequence or structural similarity (Coates, 1999.11) serine-type peptidase activity inferred from electronic annotation with InterPro:IPR008758 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
proteolysis inferred from electronic annotation with InterPro:IPR008758 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG9953 - CG11911 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9953 - Ent2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9953 - Rheb anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG9953 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0035726 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38763
Orthologs
OrthoDB Orthologs (61) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG644M52 Dipteran inclusive ortholog search EOG6HHP9S Insect inclusive ortholog search EOG6QZ6G8 Arthropod inclusive ortholog search EOG6SJ3W4 Metazoa inclusive ortholog search EOG6D8B02
Orthologs in Drosophila Species (EOG644M52)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG9953     Drosophila simulans   Dsim\GD13982 Y   Drosophila sechellia   Dsec\GM14810 Y   Drosophila erecta   Dere\GG14395 Y   Drosophila yakuba   Dyak\GE21585 Y   Drosophila ananassae   Dana\GF23556 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA22150 Y   Drosophila persimilis   Dper\GL15050 Y   Drosophila willistoni   Dwil\GK16991 Y   Drosophila virilis   Dvir\GJ13120 Y   Drosophila mojavensis   Dmoj\GI12975 Y   Drosophila grimshawi   Dgri\GH15372 Y
Orthologs in non-Drosophila Dipterans (EOG6HHP9S)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL009038   Anopheles gambiae Malaria mosquito  Agam\AGAP005914   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ007406   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ018415
Orthologs in non-Dipteran Insects (EOG6QZ6G8)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB43942 Y Apis mellifera Western honey bee  Amel\LOC410729 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG000969 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG007242 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH11236 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH21553 Y Atta cephalotes Leafcutter ant  Acep\ACEP25083 Y Atta cephalotes Leafcutter ant  Acep\ACEP18205 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO17930 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO22769 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14931 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL16963 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL16964 Y Linepithema humile Argentine ant  Lhum\LH18521 Y Linepithema humile Argentine ant  Lhum\LH23917 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB18691 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB14996 Y Solenopsis invicta Red fire ant  Sinv\SINV15813 Y Solenopsis invicta Red fire ant  Sinv\SINV10686 Y Solenopsis invicta Red fire ant  Sinv\SINV15826 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI003972 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI001912 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI008265 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI003801 Y Bombyx mori Silkmoth  Bmor\BGIBMGA000549 Y Pediculus humanus Human body louse  Phum\PHUM500230 Y Tribolium castaneum Red flour beetle  Tcas\TC003450 Y
Orthologs in non-Insect Arthropods (EOG6SJ3W4)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_191142 Y
Orthologs in non-Arthropod Metazoa (EOG6D8B02)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\F19C7.4 Y Caenorhabditis elegans Nematode  Cele\C26B9.5 Y Caenorhabditis elegans Nematode  Cele\F28E10.5 Y Caenorhabditis elegans Nematode  Cele\pcp-2 Y Caenorhabditis elegans Nematode  Cele\F19C7.2 Y Caenorhabditis elegans Nematode  Cele\K12H4.7 Y Caenorhabditis elegans Nematode  Cele\pcp-3 Y Caenorhabditis elegans Nematode  Cele\pcp-4 Y Caenorhabditis elegans Nematode  Cele\F56F10.1 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_004318gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_016727gn Y Danio rerio Zebrafish  Drer\zgc:158605 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000008182 Y Xenopus tropicalis Western clawed frog  Xtro\prss16 Y Mus musculus House mouse  Mmus\Prss16 Y Rattus norvegicus Norway rat  Rnor\Prss16 Y Homo sapiens Human  Hsap\PRSS16 Y
Human Orthologs (1)
Gene OMIM HGNC Hsap\PRSS16
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD13982 Drosophila sechellia Dsec\GM14810 Drosophila erecta Dere\GG14395 Drosophila yakuba Dyak\GE21585 Drosophila ananassae Dana\GF23556 Drosophila pseudoobscura pseudoobscura Dpse\GA22150 Drosophila persimilis Dper\GL15050 Drosophila willistoni Dwil\GK16991 Drosophila virilis Dvir\GJ13120 Drosophila mojavensis Dmoj\GI12975 Drosophila grimshawi Dgri\GH15372
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
Bloomington	15219 y1; P{SUPor-P}CG9953KG09912 ry506
VDRC	v9024 w1118; P{GD2342}v9024/TM3
Genomic Clones ( 2 )
	BACR14L10 BACR21K18 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 102 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RH04336
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT08785 GH12034 GH12046 GH28315 GM02267 GM08034 GM09882 GM10723 GM24773 LD02423 LD03403 LD10654 LD14765 LD15925 LD27360 LD34755 LD37475 LD46062 LP04176 LP11701 LP14593 LP15329 RE02702 RE09196 RE13928 RE13940 RE18281 RE19895 RE21561 RE25606 RE25866 RE25883 RE26317 RE28805 RE28907 RE31011 RE31419 RE35564 RE47026 RE58535 RE58781 RE59651 RE60027 RE61566 RE62559 RE65349 RE70329 RH02623 RH02833 RH04262 RH06462 RH11226 RH13402 RH15687 RH17355 RH39866 RH46726 RH48608 RH63427 RH66103 RH67542 RH72419 SD01728 SD09709 SD10514 SD13751 SD14443 SD14778 SD15216 SD16683 SD16735 SD21528
Other clones	1807 60672 65723 66139 153193 156853 CK01.4A.E12 CK01.23C.H1 CK01.76A.D8 CK01.105C.D5 CK01875 Dmel_dig_016265_0657_2139 Dmel_neb_014716_0663_2631 EC02050 EK008252 EK043922 EK059448 EK088215 EK123136 EK153901 EK186933 EK193533 EK193948 EK194309 EK256464 EK259761 GH14014 RE25649 RH09042
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0035726 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38763
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_139810 RefSeq (Proteins) • NP_648067 DDBJ / EMBL / GenBank • AAF50628 AAL48130 AY070659 BI590681 BZ665717 Entrez Gene - A searchable database of RefSeq genes. • 38763 UniProtKB/TrEMBL • Q8SZM1 Q9VS02
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Peptidase S28 (IPR008758) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RH04336
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0035726 DRSC - Results from RNAi screens. • FBgn0035726 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0035726 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9953-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0035726 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38763 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38763 modMine - Data generated by the modENCODE project. • FBgn0035726
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG9953 (Scherzer et al., 2003, Chen et al., 2007, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
References ( 17 )
Research paper	Baycin-Hizal et al., 2011, J. Proteome Res. 10(6): 2777--2784 GlycoFly: A Database of Drosophila N-linked Glycoproteins Identified Using SPEG-MS Techniques. [FBrf0213834] Chen et al., 2007, Cell Tissue Res. 329(1): 169--178 Study of tauopathies by comparing Drosophila and human tau in Drosophila. [FBrf0201553] Weber et al., 2005, Genetics 169(3): 1461--1475 Many P-element insertions affect wing shape in Drosophila melanogaster. [FBrf0188495] Scherzer et al., 2003, Hum. Mol. Genet. 12(19): 2457--2466 Gene expression changes presage neurodegeneration in a Drosophila model of Parkinson's disease. [FBrf0162171] Yu et al., 2003, J. Cell Biol. 162(4): 623--633 Distinct roles of Galphai and Gbeta13F subunits of the heterotrimeric G protein complex in the mediation of Drosophila neuroblast asymmetric divisions. [FBrf0162191]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
Curated genome annotation	Coates, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126658]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]