Gene Dmel\CG15829

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General Information

Symbol

Dmel\CG15829

Species

D. melanogaster

Name

Annotation symbol

CG15829

Feature type

protein_coding_gene

FlyBase ID

FBgn0035743

Gene Model Status

Current

Stock availability

1 publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

65E4-65E4

Sequence location

3L:7,122,003..7,122,480 [+]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG15829 (FBgn0035743). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: diazepam binding; enzyme inhibitor activity; fatty-acyl-CoA binding. Based on sequence similarity, it is predicted to be involved in the biological process: cellular acyl-CoA homeostasis. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Acyl-CoA-binding protein, ACBP; Acyl-CoA-binding protein, ACBP, conserved site; FERM/acyl-CoA-binding protein, 3-helical bundle. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of extremely low expression. Peak expression observed at stages throughout the larval period. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval/adult midgut, larval hindgut. Comments on Affy2 ProbeSet: ProbeSet 1633251_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG15829. Gene sequence location is 3L:7122003..7122480.

User Contributed Data

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Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

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Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

65E4-65E4

Limits computationally determined from genome sequence between P{lacW}l(3)L4060^L4060 and P{PZ}corn⁰⁴²⁰²

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG15829 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.43

Gene model reviewed during 5.46

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG15829-RA

FBtr0076913

NM_139825

404

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG15829-PA

FBpp0076622

9.7

4.58

NP_648082

AAF50609

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Acyl-CoA-binding protein, ACBP (IPR000582)

FERM/acyl-CoA-binding protein, 3-helical bundle (IPR014352)

Acyl-CoA-binding protein, ACBP, conserved site (IPR022408)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q9VS21

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval/adult midgut, larval hindgut.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		6.3
Larval Midgut		5684.4
Larval Hindgut		928.4
Larval Malpighian Tubules		17.7
Larval Fat Body		15.2
Larval Salivary Gland		8.1
Larval Trachea		32.25
Larval Carcass		8.5
Adult Head		4.7
Adult Eye		7.4
Adult Brain		5.5
Adult Thoracic-Abdominal Ganglion		1.7
Adult Crop		9.1
Adult Midgut		1981.5
Adult Hindgut		63.4
Adult Malpighian Tubules		7.2
Adult Fat Body		9.1
Adult Salivary Gland		11.2
Adult Heart		3.175
Adult VirginFemale Spermatheca		2.9
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		6.2
Adult Testis		15.9
Adult Male Accessory Gland		3.2
Adult Carcass		5.9
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		6.3
Larval Midgut		(5684.4)
Larval Hindgut		(928.4)
Larval Malpighian Tubules		17.7
Larval Fat Body		15.2
Larval Salivary Gland		8.1
Larval Trachea		32.25
Larval Carcass		8.5
Adult Head		4.7
Adult Eye		7.4
Adult Brain		5.5
Adult Thoracic-Abdominal Ganglion		1.7
Adult Crop		9.1
Adult Midgut		(1981.5)
Adult Hindgut		63.4
Adult Malpighian Tubules		7.2
Adult Fat Body		9.1
Adult Salivary Gland		11.2
Adult Heart		3.175
Adult VirginFemale Spermatheca		2.9
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		6.2
Adult Testis		15.9
Adult Male Accessory Gland		3.2
Adult Carcass		5.9
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		6.3
Larval Midgut		(5684.4)
Larval Hindgut		928.4
Larval Malpighian Tubules		17.7
Larval Fat Body		15.2
Larval Salivary Gland		8.1
Larval Trachea		32.25
Larval Carcass		8.5
Adult Head		4.7
Adult Eye		7.4
Adult Brain		5.5
Adult Thoracic-Abdominal Ganglion		1.7
Adult Crop		9.1
Adult Midgut		(1981.5)
Adult Hindgut		63.4
Adult Malpighian Tubules		7.2
Adult Fat Body		9.1
Adult Salivary Gland		11.2
Adult Heart		3.175
Adult VirginFemale Spermatheca		2.9
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		6.2
Adult Testis		15.9
Adult Male Accessory Gland		3.2
Adult Carcass		5.9
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		6.3
Larval Midgut		5684.4
Larval Hindgut		928.4
Larval Malpighian Tubules		17.7
Larval Fat Body		15.2
Larval Salivary Gland		8.1
Larval Trachea		32.25
Larval Carcass		8.5
Adult Head		4.7
Adult Eye		7.4
Adult Brain		5.5
Adult Thoracic-Abdominal Ganglion		1.7
Adult Crop		9.1
Adult Midgut		1981.5
Adult Hindgut		63.4
Adult Malpighian Tubules		7.2
Adult Fat Body		9.1
Adult Salivary Gland		11.2
Adult Heart		3.175
Adult VirginFemale Spermatheca		2.9
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		6.2
Adult Testis		15.9
Adult Male Accessory Gland		3.2
Adult Carcass		5.9
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		6.3
Larval Midgut		5684.4
Larval Hindgut		928.4
Larval Malpighian Tubules		17.7
Larval Fat Body		15.2
Larval Salivary Gland		8.1
Larval Trachea		32.25
Larval Carcass		8.5
Adult Head		4.7
Adult Eye		7.4
Adult Brain		5.5
Adult Thoracic-Abdominal Ganglion		1.7
Adult Crop		9.1
Adult Midgut		1981.5
Adult Hindgut		63.4
Adult Malpighian Tubules		7.2
Adult Fat Body		9.1
Adult Salivary Gland		11.2
Adult Heart		3.175
Adult VirginFemale Spermatheca		2.9
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		6.2
Adult Testis		15.9
Adult Male Accessory Gland		3.2
Adult Carcass		5.9
Expression Level Scale		None Low Moderate High Very high

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		6.3
Larval Midgut		(5684.4)
Larval Hindgut		(928.4)
Larval Malpighian Tubules		17.7
Larval Fat Body		15.2
Larval Salivary Gland		8.1
Larval Trachea		32.25
Larval Carcass		8.5
Adult Head		4.7
Adult Eye		7.4
Adult Brain		5.5
Adult Thoracic-Abdominal Ganglion		1.7
Adult Crop		9.1
Adult Midgut		(1981.5)
Adult Hindgut		63.4
Adult Malpighian Tubules		7.2
Adult Fat Body		9.1
Adult Salivary Gland		11.2
Adult Heart		3.175
Adult VirginFemale Spermatheca		2.9
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		6.2
Adult Testis		15.9
Adult Male Accessory Gland		3.2
Adult Carcass		5.9
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		6.3
Larval Midgut		(5684.4)
Larval Hindgut		928.4
Larval Malpighian Tubules		17.7
Larval Fat Body		15.2
Larval Salivary Gland		8.1
Larval Trachea		32.25
Larval Carcass		8.5
Adult Head		4.7
Adult Eye		7.4
Adult Brain		5.5
Adult Thoracic-Abdominal Ganglion		1.7
Adult Crop		9.1
Adult Midgut		(1981.5)
Adult Hindgut		63.4
Adult Malpighian Tubules		7.2
Adult Fat Body		9.1
Adult Salivary Gland		11.2
Adult Heart		3.175
Adult VirginFemale Spermatheca		2.9
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		6.2
Adult Testis		15.9
Adult Male Accessory Gland		3.2
Adult Carcass		5.9
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		6.3
Larval Midgut		5684.4
Larval Hindgut		928.4
Larval Malpighian Tubules		17.7
Larval Fat Body		15.2
Larval Salivary Gland		8.1
Larval Trachea		32.25
Larval Carcass		8.5
Adult Head		4.7
Adult Eye		7.4
Adult Brain		5.5
Adult Thoracic-Abdominal Ganglion		1.7
Adult Crop		9.1
Adult Midgut		1981.5
Adult Hindgut		63.4
Adult Malpighian Tubules		7.2
Adult Fat Body		9.1
Adult Salivary Gland		11.2
Adult Heart		3.175
Adult VirginFemale Spermatheca		2.9
Adult InseminatedFemale Spermatheca		4.3
Adult Ovary		6.2
Adult Testis		15.9
Adult Male Accessory Gland		3.2
Adult Carcass		5.9
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	4.7
NA	Eye	7.4
NA	Brain	5.5
6.3	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	1.7
NA	Crop	9.1
5684.4	Midgut	1981.5
928.4	Hindgut	63.4
no informative data	Malpighian Tubules	7.2
no informative data	Fat Body	9.1
8.1	Salivary Gland	no informative data
NA	Heart	3.175
no informative data	Trachea	NA
NA	VirginFemale Spermatheca	2.9
NA	InseminatedFemale Spermatheca	4.3
NA	Ovary	6.2
NA	Testis	no informative data
NA	Male Accessory Gland	3.2
8.5	Carcass	5.9

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		234
central nervous system, larvae L3		0
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		30
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		1638
digestive system, 1-day adult		120
digestive system, 4-day adult		76
digestive system, 20-day adult		196
fat body, larvae L3 wandering		2
fat body, white prepupae		8
fat body, pupae P8		12
carcass, larvae L3 wandering		4
carcass, 1-day adult		3
carcass, 4-day adult		1
carcass, 20-day adult		5
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		3
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(234)
central nervous system, larvae L3		0
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		(30)
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		(1638)
digestive system, 1-day adult		(120)
digestive system, 4-day adult		(76)
digestive system, 20-day adult		(196)
fat body, larvae L3 wandering		2
fat body, white prepupae		8
fat body, pupae P8		12
carcass, larvae L3 wandering		4
carcass, 1-day adult		3
carcass, 4-day adult		1
carcass, 20-day adult		5
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		3
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(234)
central nervous system, larvae L3		0
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		30
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		(1638)
digestive system, 1-day adult		(120)
digestive system, 4-day adult		76
digestive system, 20-day adult		(196)
fat body, larvae L3 wandering		2
fat body, white prepupae		8
fat body, pupae P8		12
carcass, larvae L3 wandering		4
carcass, 1-day adult		3
carcass, 4-day adult		1
carcass, 20-day adult		5
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		3
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		234
central nervous system, larvae L3		0
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		30
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		1638
digestive system, 1-day adult		120
digestive system, 4-day adult		76
digestive system, 20-day adult		196
fat body, larvae L3 wandering		2
fat body, white prepupae		8
fat body, pupae P8		12
carcass, larvae L3 wandering		4
carcass, 1-day adult		3
carcass, 4-day adult		1
carcass, 20-day adult		5
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		3
accessory gland, mated 4-day male		2
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		234
central nervous system, larvae L3		0
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		30
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		1638
digestive system, 1-day adult		120
digestive system, 4-day adult		76
digestive system, 20-day adult		196
fat body, larvae L3 wandering		2
fat body, white prepupae		8
fat body, pupae P8		12
carcass, larvae L3 wandering		4
carcass, 1-day adult		3
carcass, 4-day adult		1
carcass, 20-day adult		5
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		3
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(234)
central nervous system, larvae L3		0
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		30
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		(1638)
digestive system, 1-day adult		(120)
digestive system, 4-day adult		(76)
digestive system, 20-day adult		(196)
fat body, larvae L3 wandering		2
fat body, white prepupae		8
fat body, pupae P8		12
carcass, larvae L3 wandering		4
carcass, 1-day adult		3
carcass, 4-day adult		1
carcass, 20-day adult		5
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		3
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(234)
central nervous system, larvae L3		0
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		30
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		(1638)
digestive system, 1-day adult		120
digestive system, 4-day adult		76
digestive system, 20-day adult		(196)
fat body, larvae L3 wandering		2
fat body, white prepupae		8
fat body, pupae P8		12
carcass, larvae L3 wandering		4
carcass, 1-day adult		3
carcass, 4-day adult		1
carcass, 20-day adult		5
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		3
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		234
central nervous system, larvae L3		0
central nervous system, pupae P8		3
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		30
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		1638
digestive system, 1-day adult		120
digestive system, 4-day adult		76
digestive system, 20-day adult		196
fat body, larvae L3 wandering		2
fat body, white prepupae		8
fat body, pupae P8		12
carcass, larvae L3 wandering		4
carcass, 1-day adult		3
carcass, 4-day adult		1
carcass, 20-day adult		5
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		3
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of extremely low expression. Peak expression observed at stages throughout the larval period.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		2
embryo 16-18hr		11
embryo 18-20hr		18
embryo 20-22hr		26
embryo 22-24hr		33
larva L1		75
larva L2		310
larva L3 12hr old		453
larva L3 puffstage 1-2		952
larva L3 puffstage 3-6		251
larva L3 puffstage 7-9		44
white prepupae new		6
white prepupae 12hr		6
white prepupae 24hr		3
pupae 2d postWPP		2
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		3
adult male 05day		2
adult male 30day		2
adult female 01day		6
adult female 05day		8
adult female 30day		8
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		2
embryo 16-18hr		11
embryo 18-20hr		18
embryo 20-22hr		26
embryo 22-24hr		(33)
larva L1		(75)
larva L2		(310)
larva L3 12hr old		(453)
larva L3 puffstage 1-2		(952)
larva L3 puffstage 3-6		(251)
larva L3 puffstage 7-9		(44)
white prepupae new		6
white prepupae 12hr		6
white prepupae 24hr		3
pupae 2d postWPP		2
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		3
adult male 05day		2
adult male 30day		2
adult female 01day		6
adult female 05day		8
adult female 30day		8
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		2
embryo 16-18hr		11
embryo 18-20hr		18
embryo 20-22hr		26
embryo 22-24hr		33
larva L1		75
larva L2		(310)
larva L3 12hr old		(453)
larva L3 puffstage 1-2		(952)
larva L3 puffstage 3-6		(251)
larva L3 puffstage 7-9		44
white prepupae new		6
white prepupae 12hr		6
white prepupae 24hr		3
pupae 2d postWPP		2
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		3
adult male 05day		2
adult male 30day		2
adult female 01day		6
adult female 05day		8
adult female 30day		8
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		2
embryo 16-18hr		11
embryo 18-20hr		18
embryo 20-22hr		26
embryo 22-24hr		33
larva L1		75
larva L2		310
larva L3 12hr old		453
larva L3 puffstage 1-2		952
larva L3 puffstage 3-6		251
larva L3 puffstage 7-9		44
white prepupae new		6
white prepupae 12hr		6
white prepupae 24hr		3
pupae 2d postWPP		2
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		3
adult male 05day		2
adult male 30day		2
adult female 01day		6
adult female 05day		8
adult female 30day		8
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		2
embryo 16-18hr		11
embryo 18-20hr		18
embryo 20-22hr		26
embryo 22-24hr		33
larva L1		75
larva L2		310
larva L3 12hr old		453
larva L3 puffstage 1-2		952
larva L3 puffstage 3-6		251
larva L3 puffstage 7-9		44
white prepupae new		6
white prepupae 12hr		6
white prepupae 24hr		3
pupae 2d postWPP		2
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		3
adult male 05day		2
adult male 30day		2
adult female 01day		6
adult female 05day		8
adult female 30day		8
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		2
embryo 16-18hr		11
embryo 18-20hr		18
embryo 20-22hr		26
embryo 22-24hr		(33)
larva L1		(75)
larva L2		(310)
larva L3 12hr old		(453)
larva L3 puffstage 1-2		(952)
larva L3 puffstage 3-6		(251)
larva L3 puffstage 7-9		(44)
white prepupae new		6
white prepupae 12hr		6
white prepupae 24hr		3
pupae 2d postWPP		2
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		3
adult male 05day		2
adult male 30day		2
adult female 01day		6
adult female 05day		8
adult female 30day		8
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		2
embryo 16-18hr		11
embryo 18-20hr		18
embryo 20-22hr		26
embryo 22-24hr		33
larva L1		75
larva L2		(310)
larva L3 12hr old		(453)
larva L3 puffstage 1-2		(952)
larva L3 puffstage 3-6		(251)
larva L3 puffstage 7-9		44
white prepupae new		6
white prepupae 12hr		6
white prepupae 24hr		3
pupae 2d postWPP		2
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		3
adult male 05day		2
adult male 30day		2
adult female 01day		6
adult female 05day		8
adult female 30day		8
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		2
embryo 16-18hr		11
embryo 18-20hr		18
embryo 20-22hr		26
embryo 22-24hr		33
larva L1		75
larva L2		310
larva L3 12hr old		453
larva L3 puffstage 1-2		952
larva L3 puffstage 3-6		251
larva L3 puffstage 7-9		44
white prepupae new		6
white prepupae 12hr		6
white prepupae 24hr		3
pupae 2d postWPP		2
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		3
adult male 05day		2
adult male 30day		2
adult female 01day		6
adult female 05day		8
adult female 30day		8
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		0
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		1
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		0
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		1
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		0
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		1
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		0
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		1
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		0
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		1
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		0
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		1
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		0
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		1
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		1
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		0
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		1
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		125
cold shock, 4-day adult		187
heat shock, 4-day adult		526
Cadmium 50 mM 6 hrs, larvae L3		896
Cadmium 50 mM 12 hrs, larvae L3		543
Cadmium 50 mM 48 hrs, 4-day adult		641
Cadmium 100 mM 48 hrs, 4-day adult		5
Copper 0.5 mM 12 hrs, larvae L3		507
Copper 15 mM 48 hrs, 4-day adult		23
Zinc 5 mM 12 hrs, larvae L3		409
Zinc 4.5 mM 48 hrs, 4-day adult		58
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		1310
Ethanol 10% 3 hrs, larvae L3		1038
Caffeine 1.5 mg/ml 4 hrs, larvae L3		679
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		96
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		3
Rotenone 2 μg 12 hrs, larvae L3		1304
Rotenone 8 μg 12 hrs, larvae L3		1484
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		(125)
cold shock, 4-day adult		(187)
heat shock, 4-day adult		(526)
Cadmium 50 mM 6 hrs, larvae L3		(896)
Cadmium 50 mM 12 hrs, larvae L3		(543)
Cadmium 50 mM 48 hrs, 4-day adult		(641)
Cadmium 100 mM 48 hrs, 4-day adult		5
Copper 0.5 mM 12 hrs, larvae L3		(507)
Copper 15 mM 48 hrs, 4-day adult		23
Zinc 5 mM 12 hrs, larvae L3		(409)
Zinc 4.5 mM 48 hrs, 4-day adult		(58)
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		(1310)
Ethanol 10% 3 hrs, larvae L3		(1038)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(679)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		(96)
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		3
Rotenone 2 μg 12 hrs, larvae L3		(1304)
Rotenone 8 μg 12 hrs, larvae L3		(1484)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		(125)
cold shock, 4-day adult		(187)
heat shock, 4-day adult		(526)
Cadmium 50 mM 6 hrs, larvae L3		(896)
Cadmium 50 mM 12 hrs, larvae L3		(543)
Cadmium 50 mM 48 hrs, 4-day adult		(641)
Cadmium 100 mM 48 hrs, 4-day adult		5
Copper 0.5 mM 12 hrs, larvae L3		(507)
Copper 15 mM 48 hrs, 4-day adult		23
Zinc 5 mM 12 hrs, larvae L3		(409)
Zinc 4.5 mM 48 hrs, 4-day adult		58
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		(1310)
Ethanol 10% 3 hrs, larvae L3		(1038)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(679)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		96
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		3
Rotenone 2 μg 12 hrs, larvae L3		(1304)
Rotenone 8 μg 12 hrs, larvae L3		(1484)
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		125
cold shock, 4-day adult		187
heat shock, 4-day adult		526
Cadmium 50 mM 6 hrs, larvae L3		896
Cadmium 50 mM 12 hrs, larvae L3		543
Cadmium 50 mM 48 hrs, 4-day adult		641
Cadmium 100 mM 48 hrs, 4-day adult		5
Copper 0.5 mM 12 hrs, larvae L3		507
Copper 15 mM 48 hrs, 4-day adult		23
Zinc 5 mM 12 hrs, larvae L3		409
Zinc 4.5 mM 48 hrs, 4-day adult		58
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		1310
Ethanol 10% 3 hrs, larvae L3		1038
Caffeine 1.5 mg/ml 4 hrs, larvae L3		679
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		96
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		3
Rotenone 2 μg 12 hrs, larvae L3		1304
Rotenone 8 μg 12 hrs, larvae L3		1484
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		125
cold shock, 4-day adult		187
heat shock, 4-day adult		526
Cadmium 50 mM 6 hrs, larvae L3		896
Cadmium 50 mM 12 hrs, larvae L3		543
Cadmium 50 mM 48 hrs, 4-day adult		641
Cadmium 100 mM 48 hrs, 4-day adult		5
Copper 0.5 mM 12 hrs, larvae L3		507
Copper 15 mM 48 hrs, 4-day adult		23
Zinc 5 mM 12 hrs, larvae L3		409
Zinc 4.5 mM 48 hrs, 4-day adult		58
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		1310
Ethanol 10% 3 hrs, larvae L3		1038
Caffeine 1.5 mg/ml 4 hrs, larvae L3		679
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		96
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		3
Rotenone 2 μg 12 hrs, larvae L3		1304
Rotenone 8 μg 12 hrs, larvae L3		1484
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		(125)
cold shock, 4-day adult		(187)
heat shock, 4-day adult		(526)
Cadmium 50 mM 6 hrs, larvae L3		(896)
Cadmium 50 mM 12 hrs, larvae L3		(543)
Cadmium 50 mM 48 hrs, 4-day adult		(641)
Cadmium 100 mM 48 hrs, 4-day adult		5
Copper 0.5 mM 12 hrs, larvae L3		(507)
Copper 15 mM 48 hrs, 4-day adult		23
Zinc 5 mM 12 hrs, larvae L3		(409)
Zinc 4.5 mM 48 hrs, 4-day adult		(58)
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		(1310)
Ethanol 10% 3 hrs, larvae L3		(1038)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(679)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		(96)
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		3
Rotenone 2 μg 12 hrs, larvae L3		(1304)
Rotenone 8 μg 12 hrs, larvae L3		(1484)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		125
cold shock, 4-day adult		(187)
heat shock, 4-day adult		(526)
Cadmium 50 mM 6 hrs, larvae L3		(896)
Cadmium 50 mM 12 hrs, larvae L3		(543)
Cadmium 50 mM 48 hrs, 4-day adult		(641)
Cadmium 100 mM 48 hrs, 4-day adult		5
Copper 0.5 mM 12 hrs, larvae L3		(507)
Copper 15 mM 48 hrs, 4-day adult		23
Zinc 5 mM 12 hrs, larvae L3		(409)
Zinc 4.5 mM 48 hrs, 4-day adult		58
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		(1310)
Ethanol 10% 3 hrs, larvae L3		(1038)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(679)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		96
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		3
Rotenone 2 μg 12 hrs, larvae L3		(1304)
Rotenone 8 μg 12 hrs, larvae L3		(1484)
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		125
cold shock, 4-day adult		187
heat shock, 4-day adult		526
Cadmium 50 mM 6 hrs, larvae L3		896
Cadmium 50 mM 12 hrs, larvae L3		543
Cadmium 50 mM 48 hrs, 4-day adult		641
Cadmium 100 mM 48 hrs, 4-day adult		5
Copper 0.5 mM 12 hrs, larvae L3		507
Copper 15 mM 48 hrs, 4-day adult		23
Zinc 5 mM 12 hrs, larvae L3		409
Zinc 4.5 mM 48 hrs, 4-day adult		58
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		1310
Ethanol 10% 3 hrs, larvae L3		1038
Caffeine 1.5 mg/ml 4 hrs, larvae L3		679
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		96
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		3
Rotenone 2 μg 12 hrs, larvae L3		1304
Rotenone 8 μg 12 hrs, larvae L3		1484
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010, Graveley et al., 2011)

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0035743

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG15829-RA

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of CG15829	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 2 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG15829	Class	Mutagen	Stocks	Known lesion
CG15829^KK111610		in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG15829^GD13143		in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes

Aneuploid Aberrations

Disrupted in

Df(3L)Exel6110

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD13143}

P{KK111610}

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 4 terms )

Molecular Function

CV term

Evidence

References

diazepam binding

inferred from sequence or structural similarity with EMBL:M14200

(FlyBase, 1992-)

enzyme inhibitor activity

inferred from sequence or structural similarity with EMBL:M14200

(FlyBase, 1992-)

fatty-acyl-CoA binding

inferred from sequence or structural similarity with UniProtKB:P45882

(FlyBase, 1992-)

Biological Process

CV term

Evidence

References

cellular acyl-CoA homeostasis

inferred from sequence or structural similarity with UniProtKB:P45882

(FlyBase, 1992-)

Cellular Component ( 0 terms)

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG15829 allele

Gene

References

External Data

Linkouts

BioGRID - A database of protein and genetic interactions

•

64227

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0035743

InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.

•

38782

Orthologs

OrthoDB Orthologs (30) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG6WM5FG

Dipteran inclusive ortholog search

No orthologs identified

Insect inclusive ortholog search

EOG6RR5FD

Arthropod inclusive ortholog search

No orthologs identified

Metazoa inclusive ortholog search

EOG63NM8M

Orthologs in Drosophila Species (EOG6WM5FG)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA13977

Drosophila persimilis

Dper\GL25026

Drosophila willistoni

Dwil\GK16652

Drosophila virilis

Dvir\GJ12060

Drosophila mojavensis

Dmoj\GI13294

Drosophila grimshawi

Dgri\GH14516

Drosophila grimshawi

Dgri\GH14517

Orthologs in non-Drosophila Dipterans (None identified)

No non-Drosophilid orthologies identified

Orthologs in non-Dipteran Insects (EOG6RR5FD)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Bombyx mori

Silkmoth

Bmor\BGIBMGA002905

Orthologs in non-Insect Arthropods (None identified)

No non-Insect Arthropod orthologies identified

Orthologs in non-Arthropod Metazoa (EOG63NM8M)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Caenorhabditis elegans

Nematode

Cele\acbp-1

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_012636gn

Danio rerio

Zebrafish

Drer\acbd7

Danio rerio

Zebrafish

Drer\zgc:77734

Xenopus tropicalis

Western clawed frog

Xtro\acbd7

Gallus gallus

Domestic chicken

Ggal\ACBD7

Gallus gallus

Domestic chicken

Ggal\DBI

Mus musculus

House mouse

Mmus\Dbil5

Mus musculus

House mouse

Mmus\Acbd7

Mus musculus

House mouse

Mmus\Dbi

Rattus norvegicus

Norway rat

Rnor\Dbi

Rattus norvegicus

Norway rat

Rnor\Dbil5

Rattus norvegicus

Norway rat

Rnor\LOC301444

Rattus norvegicus

Norway rat

Rnor\Acbd7

Homo sapiens

Human

Hsap\DBI

Homo sapiens

Human

Hsap\ACBD7

Human Orthologs (2)

Gene

OMIM

HGNC

Hsap\DBI

Hsap\ACBD7

AAA Orthologs (11) based on analysis using Dmel annotation version 4.3

Organism

Gene

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA13977

Drosophila persimilis

Dper\GL25026

Drosophila willistoni

Dwil\GK16652

Drosophila virilis

Dvir\GJ12060

Drosophila mojavensis

Dmoj\GI13294

Drosophila grimshawi

Dgri\GH14516

Stocks & Reagents

Stocks Listed in FlyBase ( 1 )

VDRC

v104642

P{KK111610}VIE-260B

Genomic Clones ( 2 )

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 5 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

MIP30414

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0035743

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

38782

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_139825

RefSeq (Proteins)

•

NP_648082

DDBJ / EMBL / GenBank

•

AAF50609

Entrez Gene - A searchable database of RefSeq genes.

•

38782

UniProtKB/TrEMBL

•

Q9VS21

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Acyl-CoA-binding protein, ACBP (IPR000582)

FERM/acyl-CoA-binding protein, 3-helical bundle (IPR014352)

Acyl-CoA-binding protein, ACBP, conserved site (IPR022408)

Linkouts

BioGRID - A database of protein and genetic interactions

•

64227

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0035743

DRSC - Results from RNAi screens.

•

FBgn0035743

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0035743

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG15829-RA

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0035743

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

38782

InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.

•

38782

modMine - Data generated by the modENCODE project.

•

FBgn0035743

Synonyms & Secondary IDs ( 1 )

Reported As

Symbol Synonym

CG15829

(Brun et al., 2006, Rynes et al., 2012, Keleman et al., 2009.8.5, Zsindely et al., 2009)

Name Synonym

Secondary FlyBase IDs

References ( 15 )

Research paper

Rynes et al., 2012, Mol. Cell. Biol. 32(19): 3949--3962: Activating transcription factor 3 regulates immune and metabolic homeostasis. [FBrf0219385]
Zsindely et al., 2009, Nucleic Acids Res. 37(20): 6665--6680: The loss of histone H3 lysine 9 acetylation due to dSAGA-specific dAda2b mutation influences the expression of only a small subset of genes. [FBrf0209301]
Brun et al., 2006, Genes Cells 11(4): 397--407: The MAPKKK Mekk1 regulates the expression of Turandot stress genes in response to septic injury in Drosophila. [FBrf0190571]
De Gregorio et al., 2002, EMBO J. 21(11): 2568--2579: The Toll and Imd pathways are the major regulators of the immune response in Drosophila. [FBrf0148976]
De Gregorio et al., 2001, Proc. Natl. Acad. Sci. U.S.A. 98(22): 12590--12595: Genome-wide analysis of the Drosophila immune response by using oligonucleotide microarrays. [FBrf0139795]

Supplementary material

Graveley et al., 2011, Nature 471(7339):: Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980]
The modENCODE Consortium, 2010, Science 330(6012):: DataS14: Gene co-expression clusters. [FBrf0213979]
Dietzl et al., 2007, Nature 448(7150):: Supplementary Table 1. [FBrf0202579]
Giot et al., 2003, Science 302(5651):: Tables S1 to S7. [FBrf0166452]

Personal communication to FlyBase

Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]

FlyBase analysis

FlyBase, 1992-, FlyBase curation.: FlyBase curation. [FBrf0105495]

Curated genome annotation

FamiliarityBreedsContempt, 1999.11, [Automatic annotations performed at the Celera Jamboreee.]: [Automatic annotations performed at the Celera Jamboreee.] [FBrf0126705]
Milshina, 1999.11, [Annotations performed at the Celera Jamboreee.]: [Annotations performed at the Celera Jamboreee.] [FBrf0126686]