A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\CG8209

General Information
SymbolDmel\CG8209SpeciesD. melanogaster
NameAnnotation symbolCG8209
Feature typeprotein_coding_geneFlyBase IDFBgn0035830
Gene Model StatusCurrent Stock availability 4 publicly available
Genomic Location
Chromosome (arm)3LRecombination map
Cytogenetic map66A21-66A21Sequence location3L:7,969,403..7,970,949 [+]

Genomic Maps

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modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol Dmel\CG8209 (FBgn0035830). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: zinc ion binding. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: UBA-like; UBX; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote; Zinc finger, C2H2; Zinc finger, C2H2-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, during late larval stages, during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult ovary, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1625389_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG8209. Gene sequence location is 3L:7969403..7970949.

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Description
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What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2011_10
Controlled Vocabulary Terms
FB2012_01
Sequence features
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
66A21-66A21  
Limits computationally determined from genome sequence between P{PZ}l(3)0721708223&P{EP}Rac2EP3118 and P{lacW}Nmtj1C7  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG8209 for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0076767 FBtr0076766 FBtr0076764 FBtr0076765 FBtr0076753 FBtr0076763 FBtr0076758 FBtr0076755 FBtr0076757 FBtr0076759 FBtr0076756 FBtr0076754 FBpp0076482 FBpp0076481 FBpp0076479 FBpp0076480 FBpp0076470 FBpp0076478 FBti0125558_2 FBti0125558_1 FBti0025214 FBti0038880 FBti0099769 FBti0047834 FBti0107770 FBti0113296 FBti0103726 FBti0039823 FBti0108214 FBti0112827 FBti0107325 FBti0072150 FBti0009920 FBti0059621 FBti0100185 FBti0028966 FBti0029846 FBti0100184 FBti0044457 FBti0102334
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0076753
  1398
  331
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0076470  
36.7  
331  
5.91  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view HP4-RA HP4-RB CG8209-RA CG8038-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0035830


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0035830
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, during late larval stages, during early pupal stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0035830 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 4578
embryo 02-04hr
 
 4317
embryo 04-06hr
 
 5823
embryo 06-08hr
 
 5880
embryo 08-10hr
 
 4365
embryo 10-12hr
 
 3512
embryo 12-14hr
 
 2191
embryo 14-16hr
 
 1535
embryo 16-18hr
 
 961
embryo 18-20hr
 
 734
embryo 20-22hr
 
 497
embryo 22-24hr
 
 546
larva L1
 
 1118
larva L2
 
 1817
larva L3 12hr old
 
 1736
larva L3 puffstage 1-2
 
 2611
larva L3 puffstage 3-6
 
 3662
larva L3 puffstage 7-9
 
 4118
white prepupae new
 
 4378
white prepupae 12hr
 
 4285
white prepupae 24hr
 
 5047
pupae 2d postWPP
 
 2911
pupae 3d postWPP
 
 1734
pupae 4d postWPP
 
 1639
adult male 01day
 
 2052
adult male 05day
 
 2476
adult male 30day
 
 2052
adult female 01day
 
 2190
adult female 05day
 
 3166
adult female 30day
 
 2873
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (4578)
embryo 02-04hr
 (4317)
embryo 04-06hr
 (5823)
embryo 06-08hr
 (5880)
embryo 08-10hr
 (4365)
embryo 10-12hr
 (3512)
embryo 12-14hr
 (2191)
embryo 14-16hr
 (1535)
embryo 16-18hr
 (961)
embryo 18-20hr
 (734)
embryo 20-22hr
 (497)
embryo 22-24hr
 (546)
larva L1
 (1118)
larva L2
 (1817)
larva L3 12hr old
 (1736)
larva L3 puffstage 1-2
 (2611)
larva L3 puffstage 3-6
 (3662)
larva L3 puffstage 7-9
 (4118)
white prepupae new
 (4378)
white prepupae 12hr
 (4285)
white prepupae 24hr
 (5047)
pupae 2d postWPP
 (2911)
pupae 3d postWPP
 (1734)
pupae 4d postWPP
 (1639)
adult male 01day
 (2052)
adult male 05day
 (2476)
adult male 30day
 (2052)
adult female 01day
 (2190)
adult female 05day
 (3166)
adult female 30day
 (2873)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (4578)
embryo 02-04hr
 (4317)
embryo 04-06hr
 (5823)
embryo 06-08hr
 (5880)
embryo 08-10hr
 (4365)
embryo 10-12hr
 (3512)
embryo 12-14hr
 (2191)
embryo 14-16hr
 (1535)
embryo 16-18hr
 
 961
embryo 18-20hr
 
 734
embryo 20-22hr
 
 497
embryo 22-24hr
 
 546
larva L1
 
 1118
larva L2
 (1817)
larva L3 12hr old
 (1736)
larva L3 puffstage 1-2
 (2611)
larva L3 puffstage 3-6
 (3662)
larva L3 puffstage 7-9
 (4118)
white prepupae new
 (4378)
white prepupae 12hr
 (4285)
white prepupae 24hr
 (5047)
pupae 2d postWPP
 (2911)
pupae 3d postWPP
 (1734)
pupae 4d postWPP
 (1639)
adult male 01day
 (2052)
adult male 05day
 (2476)
adult male 30day
 (2052)
adult female 01day
 (2190)
adult female 05day
 (3166)
adult female 30day
 (2873)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 4578
embryo 02-04hr
 
 4317
embryo 04-06hr
 
 5823
embryo 06-08hr
 
 5880
embryo 08-10hr
 
 4365
embryo 10-12hr
 
 3512
embryo 12-14hr
 
 2191
embryo 14-16hr
 
 1535
embryo 16-18hr
 
 961
embryo 18-20hr
 
 734
embryo 20-22hr
 
 497
embryo 22-24hr
 
 546
larva L1
 
 1118
larva L2
 
 1817
larva L3 12hr old
 
 1736
larva L3 puffstage 1-2
 
 2611
larva L3 puffstage 3-6
 
 3662
larva L3 puffstage 7-9
 
 4118
white prepupae new
 
 4378
white prepupae 12hr
 
 4285
white prepupae 24hr
 
 5047
pupae 2d postWPP
 
 2911
pupae 3d postWPP
 
 1734
pupae 4d postWPP
 
 1639
adult male 01day
 
 2052
adult male 05day
 
 2476
adult male 30day
 
 2052
adult female 01day
 
 2190
adult female 05day
 
 3166
adult female 30day
 
 2873
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 4578
embryo 02-04hr
 
 4317
embryo 04-06hr
 
 5823
embryo 06-08hr
 
 5880
embryo 08-10hr
 
 4365
embryo 10-12hr
 
 3512
embryo 12-14hr
 
 2191
embryo 14-16hr
 
 1535
embryo 16-18hr
 
 961
embryo 18-20hr
 
 734
embryo 20-22hr
 
 497
embryo 22-24hr
 
 546
larva L1
 
 1118
larva L2
 
 1817
larva L3 12hr old
 
 1736
larva L3 puffstage 1-2
 
 2611
larva L3 puffstage 3-6
 
 3662
larva L3 puffstage 7-9
 
 4118
white prepupae new
 
 4378
white prepupae 12hr
 
 4285
white prepupae 24hr
 
 5047
pupae 2d postWPP
 
 2911
pupae 3d postWPP
 
 1734
pupae 4d postWPP
 
 1639
adult male 01day
 
 2052
adult male 05day
 
 2476
adult male 30day
 
 2052
adult female 01day
 
 2190
adult female 05day
 
 3166
adult female 30day
 
 2873
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0035830 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 4578
embryo 02-04hr
 
 4317
embryo 04-06hr
 
 5823
embryo 06-08hr
 
 5880
embryo 08-10hr
 
 4365
embryo 10-12hr
 
 3512
embryo 12-14hr
 
 2191
embryo 14-16hr
 
 1535
embryo 16-18hr
 
 961
embryo 18-20hr
 
 734
embryo 20-22hr
 
 497
embryo 22-24hr
 
 546
larva L1
 
 1118
larva L2
 
 1817
larva L3 12hr old
 
 1736
larva L3 puffstage 1-2
 
 2611
larva L3 puffstage 3-6
 
 3662
larva L3 puffstage 7-9
 
 4118
white prepupae new
 
 4378
white prepupae 12hr
 
 4285
white prepupae 24hr
 
 5047
pupae 2d postWPP
 
 2911
pupae 3d postWPP
 
 1734
pupae 4d postWPP
 
 1639
adult male 01day
 
 2052
adult male 05day
 
 2476
adult male 30day
 
 2052
adult female 01day
 
 2190
adult female 05day
 
 3166
adult female 30day
 
 2873
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (4578)
embryo 02-04hr
 (4317)
embryo 04-06hr
 (5823)
embryo 06-08hr
 (5880)
embryo 08-10hr
 (4365)
embryo 10-12hr
 (3512)
embryo 12-14hr
 (2191)
embryo 14-16hr
 (1535)
embryo 16-18hr
 (961)
embryo 18-20hr
 (734)
embryo 20-22hr
 (497)
embryo 22-24hr
 (546)
larva L1
 (1118)
larva L2
 (1817)
larva L3 12hr old
 (1736)
larva L3 puffstage 1-2
 (2611)
larva L3 puffstage 3-6
 (3662)
larva L3 puffstage 7-9
 (4118)
white prepupae new
 (4378)
white prepupae 12hr
 (4285)
white prepupae 24hr
 (5047)
pupae 2d postWPP
 (2911)
pupae 3d postWPP
 (1734)
pupae 4d postWPP
 (1639)
adult male 01day
 (2052)
adult male 05day
 (2476)
adult male 30day
 (2052)
adult female 01day
 (2190)
adult female 05day
 (3166)
adult female 30day
 (2873)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (4578)
embryo 02-04hr
 (4317)
embryo 04-06hr
 (5823)
embryo 06-08hr
 (5880)
embryo 08-10hr
 (4365)
embryo 10-12hr
 (3512)
embryo 12-14hr
 2191
embryo 14-16hr
 1535
embryo 16-18hr
 
 961
embryo 18-20hr
 
 734
embryo 20-22hr
 
 497
embryo 22-24hr
 
 546
larva L1
 
 1118
larva L2
 1817
larva L3 12hr old
 1736
larva L3 puffstage 1-2
 (2611)
larva L3 puffstage 3-6
 (3662)
larva L3 puffstage 7-9
 (4118)
white prepupae new
 (4378)
white prepupae 12hr
 (4285)
white prepupae 24hr
 (5047)
pupae 2d postWPP
 (2911)
pupae 3d postWPP
 1734
pupae 4d postWPP
 1639
adult male 01day
 2052
adult male 05day
 (2476)
adult male 30day
 2052
adult female 01day
 2190
adult female 05day
 (3166)
adult female 30day
 (2873)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 4578
embryo 02-04hr
 
 4317
embryo 04-06hr
 
 5823
embryo 06-08hr
 
 5880
embryo 08-10hr
 
 4365
embryo 10-12hr
 
 3512
embryo 12-14hr
 
 2191
embryo 14-16hr
 
 1535
embryo 16-18hr
 
 961
embryo 18-20hr
 
 734
embryo 20-22hr
 
 497
embryo 22-24hr
 
 546
larva L1
 
 1118
larva L2
 
 1817
larva L3 12hr old
 
 1736
larva L3 puffstage 1-2
 
 2611
larva L3 puffstage 3-6
 
 3662
larva L3 puffstage 7-9
 
 4118
white prepupae new
 
 4378
white prepupae 12hr
 
 4285
white prepupae 24hr
 
 5047
pupae 2d postWPP
 
 2911
pupae 3d postWPP
 
 1734
pupae 4d postWPP
 
 1639
adult male 01day
 
 2052
adult male 05day
 
 2476
adult male 30day
 
 2052
adult female 01day
 
 2190
adult female 05day
 
 3166
adult female 30day
 
 2873
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 4578
embryo 02-04hr
 
 4317
embryo 04-06hr
 
 5823
embryo 06-08hr
 
 5880
embryo 08-10hr
 
 4365
embryo 10-12hr
 
 3512
embryo 12-14hr
 
 2191
embryo 14-16hr
 
 1535
embryo 16-18hr
 
 961
embryo 18-20hr
 
 734
embryo 20-22hr
 
 497
embryo 22-24hr
 
 546
larva L1
 
 1118
larva L2
 
 1817
larva L3 12hr old
 
 1736
larva L3 puffstage 1-2
 
 2611
larva L3 puffstage 3-6
 
 3662
larva L3 puffstage 7-9
 
 4118
white prepupae new
 
 4378
white prepupae 12hr
 
 4285
white prepupae 24hr
 
 5047
pupae 2d postWPP
 
 2911
pupae 3d postWPP
 
 1734
pupae 4d postWPP
 
 1639
adult male 01day
 
 2052
adult male 05day
 
 2476
adult male 30day
 
 2052
adult female 01day
 
 2190
adult female 05day
 
 3166
adult female 30day
 
 2873
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0035830


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0035830
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult ovary, adult male reproductive system, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0035830 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 382.4
Larval Midgut
 
 191.8
Larval Hindgut
 
 272.6
Larval Malpighian Tubules
 
 336.2
Larval Fat Body
 
 218.5
Larval Salivary Gland
 
 345.3
Larval Trachea
 
 301.125
Larval Carcass
 
 274.575
Adult Head
 
 158.6
Adult Eye
 
 102.675
Adult Brain
 
 132.9
Adult Thoracic-Abdominal Ganglion
 
 137.5
Adult Crop
 
 237.8
Adult Midgut
 
 105.1
Adult Hindgut
 
 200.2
Adult Malpighian Tubules
 
 92
Adult Fat Body
 
 270.4
Adult Salivary Gland
 
 183.2
Adult Heart
 
 216.825
Adult VirginFemale Spermatheca
 
 61.3
Adult InseminatedFemale Spermatheca
 
 63.8
Adult Ovary
 
 253.6
Adult Testis
 
 249.1
Adult Male Accessory Gland
 
 346.2
Adult Carcass
 
 274.4
Expression Level Scale
 None 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 382.4
Larval Midgut
 
 191.8
Larval Hindgut
 
 272.6
Larval Malpighian Tubules
 
 336.2
Larval Fat Body
 
 218.5
Larval Salivary Gland
 
 345.3
Larval Trachea
 
 301.125
Larval Carcass
 
 274.575
Adult Head
 
 158.6
Adult Eye
 
 102.675
Adult Brain
 
 132.9
Adult Thoracic-Abdominal Ganglion
 
 137.5
Adult Crop
 
 237.8
Adult Midgut
 
 105.1
Adult Hindgut
 
 200.2
Adult Malpighian Tubules
 
 92
Adult Fat Body
 
 270.4
Adult Salivary Gland
 
 183.2
Adult Heart
 
 216.825
Adult VirginFemale Spermatheca
 
 61.3
Adult InseminatedFemale Spermatheca
 
 63.8
Adult Ovary
 
 253.6
Adult Testis
 
 249.1
Adult Male Accessory Gland
 
 346.2
Adult Carcass
 
 274.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 382.4
Larval Midgut
 
 191.8
Larval Hindgut
 
 272.6
Larval Malpighian Tubules
 
 336.2
Larval Fat Body
 
 218.5
Larval Salivary Gland
 
 345.3
Larval Trachea
 
 301.125
Larval Carcass
 
 274.575
Adult Head
 
 158.6
Adult Eye
 
 102.675
Adult Brain
 
 132.9
Adult Thoracic-Abdominal Ganglion
 
 137.5
Adult Crop
 
 237.8
Adult Midgut
 
 105.1
Adult Hindgut
 
 200.2
Adult Malpighian Tubules
 
 92
Adult Fat Body
 
 270.4
Adult Salivary Gland
 
 183.2
Adult Heart
 
 216.825
Adult VirginFemale Spermatheca
 
 61.3
Adult InseminatedFemale Spermatheca
 
 63.8
Adult Ovary
 
 253.6
Adult Testis
 
 249.1
Adult Male Accessory Gland
 
 346.2
Adult Carcass
 
 274.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 382.4
Larval Midgut
 
 191.8
Larval Hindgut
 
 272.6
Larval Malpighian Tubules
 
 336.2
Larval Fat Body
 
 218.5
Larval Salivary Gland
 
 345.3
Larval Trachea
 
 301.125
Larval Carcass
 
 274.575
Adult Head
 
 158.6
Adult Eye
 
 102.675
Adult Brain
 
 132.9
Adult Thoracic-Abdominal Ganglion
 
 137.5
Adult Crop
 
 237.8
Adult Midgut
 
 105.1
Adult Hindgut
 
 200.2
Adult Malpighian Tubules
 
 92
Adult Fat Body
 
 270.4
Adult Salivary Gland
 
 183.2
Adult Heart
 
 216.825
Adult VirginFemale Spermatheca
 
 61.3
Adult InseminatedFemale Spermatheca
 
 63.8
Adult Ovary
 
 253.6
Adult Testis
 
 249.1
Adult Male Accessory Gland
 
 346.2
Adult Carcass
 
 274.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0035830 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 382.4
Larval Midgut
 
 191.8
Larval Hindgut
 
 272.6
Larval Malpighian Tubules
 
 336.2
Larval Fat Body
 
 218.5
Larval Salivary Gland
 
 345.3
Larval Trachea
 
 301.125
Larval Carcass
 
 274.575
Adult Head
 
 158.6
Adult Eye
 
 102.675
Adult Brain
 
 132.9
Adult Thoracic-Abdominal Ganglion
 
 137.5
Adult Crop
 
 237.8
Adult Midgut
 
 105.1
Adult Hindgut
 
 200.2
Adult Malpighian Tubules
 
 92
Adult Fat Body
 
 270.4
Adult Salivary Gland
 
 183.2
Adult Heart
 
 216.825
Adult VirginFemale Spermatheca
 
 61.3
Adult InseminatedFemale Spermatheca
 
 63.8
Adult Ovary
 
 253.6
Adult Testis
 
 249.1
Adult Male Accessory Gland
 
 346.2
Adult Carcass
 
 274.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 382.4
Larval Midgut
 
 191.8
Larval Hindgut
 
 272.6
Larval Malpighian Tubules
 
 336.2
Larval Fat Body
 
 218.5
Larval Salivary Gland
 
 345.3
Larval Trachea
 
 301.125
Larval Carcass
 
 274.575
Adult Head
 
 158.6
Adult Eye
 
 102.675
Adult Brain
 
 132.9
Adult Thoracic-Abdominal Ganglion
 
 137.5
Adult Crop
 
 237.8
Adult Midgut
 
 105.1
Adult Hindgut
 
 200.2
Adult Malpighian Tubules
 
 92
Adult Fat Body
 
 270.4
Adult Salivary Gland
 
 183.2
Adult Heart
 
 216.825
Adult VirginFemale Spermatheca
 
 61.3
Adult InseminatedFemale Spermatheca
 
 63.8
Adult Ovary
 
 253.6
Adult Testis
 
 249.1
Adult Male Accessory Gland
 
 346.2
Adult Carcass
 
 274.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 382.4
Larval Midgut
 
 191.8
Larval Hindgut
 
 272.6
Larval Malpighian Tubules
 
 336.2
Larval Fat Body
 
 218.5
Larval Salivary Gland
 
 345.3
Larval Trachea
 
 301.125
Larval Carcass
 
 274.575
Adult Head
 
 158.6
Adult Eye
 
 102.675
Adult Brain
 
 132.9
Adult Thoracic-Abdominal Ganglion
 
 137.5
Adult Crop
 
 237.8
Adult Midgut
 
 105.1
Adult Hindgut
 
 200.2
Adult Malpighian Tubules
 
 92
Adult Fat Body
 
 270.4
Adult Salivary Gland
 
 183.2
Adult Heart
 
 216.825
Adult VirginFemale Spermatheca
 
 61.3
Adult InseminatedFemale Spermatheca
 
 63.8
Adult Ovary
 
 253.6
Adult Testis
 
 249.1
Adult Male Accessory Gland
 
 346.2
Adult Carcass
 
 274.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 382.4
Larval Midgut
 
 191.8
Larval Hindgut
 
 272.6
Larval Malpighian Tubules
 
 336.2
Larval Fat Body
 
 218.5
Larval Salivary Gland
 
 345.3
Larval Trachea
 
 301.125
Larval Carcass
 
 274.575
Adult Head
 
 158.6
Adult Eye
 
 102.675
Adult Brain
 
 132.9
Adult Thoracic-Abdominal Ganglion
 
 137.5
Adult Crop
 
 237.8
Adult Midgut
 
 105.1
Adult Hindgut
 
 200.2
Adult Malpighian Tubules
 
 92
Adult Fat Body
 
 270.4
Adult Salivary Gland
 
 183.2
Adult Heart
 
 216.825
Adult VirginFemale Spermatheca
 
 61.3
Adult InseminatedFemale Spermatheca
 
 63.8
Adult Ovary
 
 253.6
Adult Testis
 
 249.1
Adult Male Accessory Gland
 
 346.2
Adult Carcass
 
 274.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 158.6
 
NA 
Eye
 
 102.675
 
NA 
Brain
 
 132.9
 
382.4 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 137.5
 
NA 
Crop
 
 237.8
 
191.8 
Midgut
 
 105.1
 
272.6 
Hindgut
 
 200.2
 
336.2 
Malpighian Tubules
 
 92
 
218.5 
Fat Body
 
 270.4
 
345.3 
Salivary Gland
 
 183.2
 
NA 
Heart
 
 216.825
 
301.125 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 61.3
 
NA 
InseminatedFemale Spermatheca
 
 63.8
 
NA 
Ovary
 
 253.6
 
NA 
Testis
 
 249.1
 
NA 
Male Accessory Gland
 
 346.2
 
274.575 
Carcass
 
 274.4

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyExpress - Embryonic expression images (BDGP data)
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 3 )
For All Classical Alleles Show

Allele of CG8209ClassMutagenStocksKnown lesion
CG8209EY090161 --
CG8209410 Yes
CG8209CB020860 Yes
hide Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show

Allele of CG8209ClassMutagenStocksKnown lesion
CG8209GD138442 Yes
CG8209KK1044751 Yes
hide Aneuploid Aberrations
Disrupted in
Partially disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
UAS construct
Insertions
Type of insertions
Name
Expression data
insertion of mobile activating element
miscellaneous insertions
hide Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
hide Terms Based on Experimental Evidence ( 0 terms )
hide Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term
References
Biological Process ( 0 terms)
Cellular Component
CV term
References
hide Sequence Ontology: Class of Gene
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Protein-protein
Interacting group
Assay
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Interacts with
Please look at the allele data for full details of the genetic interactions
CG8209 allele
Gene
References
hide External Data
Linkouts
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
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hide Stocks Listed in FlyBase ( 4 )
Bloomington
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 107 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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Source for database identity of
Source for database merge of
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Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym
anon-WO0172774.138
 
Name Synonym
Secondary FlyBase IDs
  • FBgn0046458
hide References ( 17 )
Research paper
Franco et al., 2011, Mol. Cell. Proteomics 10(5): M110.002188
A Novel Strategy to Isolate Ubiquitin Conjugates Reveals Wide Role for Ubiquitination during Neural Development. [FBrf0213919]
Schwendemann et al., 2008, Proc. Natl. Acad. Sci. U.S.A. 105(1): 204--209
Hip, an HP1-interacting protein, is a haplo- and triplo-suppressor of position effect variegation. [FBrf0203015]
Bilen and Bonini, 2007, PLoS Genet. 3(10): e177
Genome-wide screen for modifiers of ataxin-3 neurodegeneration in Drosophila. [FBrf0202746]
Buszczak et al., 2007, Genetics 175(3): 1505--1531
The Carnegie protein trap library: A versatile tool for Drosophila developmental studies. [FBrf0200345]
Supplementary material
The modENCODE Consortium, 2010, Science 330(6012):
DataS14: Gene co-expression clusters. [FBrf0213979]
Wasbrough et al., 2010, J. Proteomics 73(11):
Supplemental Table 1. Mass spectrometry data. [FBrf0213252]
Mummery-Widmer et al., 2009, Nature 458(7241):
Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase
Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center
RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center
RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.
Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
Ryder, 2004.4.26, Exelixis CG deletion data.
Exelixis CG deletion data. [FBrf0184335]
Oliver, 2001.8.16, File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348).
File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). [FBrf0137492]
FlyBase analysis
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0125078]
Patent
Deak et al., 2001.10.4, World Patent 0172774-A:
Cell cycle progression proteins. [FBrf0141233]