FB2020_06, released Dec 22, 2020

Gene: Dmel\Cpsf6

Open Close
General Information
Symbol
Dmel\Cpsf6
Species
D. melanogaster
Name
Cleavage and polyadenylation specific factor 6
Annotation Symbol
CG7185
Feature Type
protein_coding_gene
FlyBase ID
FBgn0035872
Gene Model Status
Current
Stock Availability
5 publicly available
Gene Snapshot
Contributions welcome
Other Summaries
Key Links
Genomic Location
Cytogenetic map
66C5-66C6
Sequence location
3L:8,310,493..8,315,502 [-]
Recombination map

3-24

RefSeq locus
NT_037436 REGION:8310493..8315502
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Gene Ontology (GO) Annotations (5 terms)
Molecular Function (1 term)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
enables mRNA binding
inferred from direct assay
(Tang et al., 2018)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
enables mRNA binding
inferred from sequence or structural similarity
(Lasko, 2000)
Biological Process (3 terms)
Terms Based on Experimental Evidence (3 terms)
CV Term
Evidence
References
involved_in positive regulation of autophagy
inferred from genetic interaction with FLYBASE:gig; FB:FBgn0005198, FLYBASE:Tsc1; FB:FBgn0026317
(Tang et al., 2018)
inferred from genetic interaction with FLYBASE:Cdk8; FB:FBgn0015618
(Tang et al., 2018)
inferred from genetic interaction with FLYBASE:Doa; FB:FBgn0265998
(Tang et al., 2018)
involved_in regulation of alternative mRNA splicing, via spliceosome
inferred from high throughput mutant phenotype
(Park et al., 2004)
involved_in regulation of RNA splicing
inferred from mutant phenotype
(Tang et al., 2018)
Terms Based on Predictions or Assertions (0 terms)
Cellular Component (1 term)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
located_in nucleus
inferred from direct assay
(Tang et al., 2018)
inferred from high throughput direct assay
(Sarov et al., 2016)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
located_in nucleus
inferred by curator from GO:0000381
(Park et al., 2004)
Gene Group (FlyBase)
Protein Family (UniProt)
Belongs to the RRM CPSF6/7 family. (Q9VSH4)
Protein Signatures (InterPro)
Summaries
Protein Function (UniProtKB)
May play a role in pre-mRNA 3'-processing.
(UniProt, Q9VSH4)
Gene Model and Products
Number of Transcripts
2
Number of Unique Polypeptides
2

Please see the JBrowse view of Dmel\Cpsf6 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.45

Gene model reviewed during 5.56

Sequence Ontology: Class of Gene
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
Cpsf6-RA
FBtr0076710
NM_139949
2862
652
Cpsf6-RB
FBtr0304628
NM_001259736
2721
605
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
Cpsf6-PA
FBpp0076433
71.1
652
10.13
NP_648206
AAF50445
Cpsf6-PB
FBpp0293170
66.1
605
9.86
NP_001246665
AFH04336
Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Nucleotide / Polypeptide Records
 
UniProt
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Cpsf6 using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
Polypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
adult stage
adult head
• membrane
(Aradska et al., 2015)
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
located_in nucleus
inferred from direct assay
(Tang et al., 2018)
inferred from high throughput direct assay
(Sarov et al., 2016)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\Cpsf6 in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyExpress - Embryonic expression images (BDGP data)
  • Stages(s) 1-3
  • Stages(s) 4-6
  • Stages(s) 9-10
  • Stages(s) 11-12
  • Stages(s) 13-16
FlyBase Wiki
Image Based Resources
Alleles, Insertions, and Transgenic Constructs
Classical and Insertion Alleles ( 5 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 7 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of Cpsf6
Transgenic constructs containing regulatory region of Cpsf6
Deletions and Duplications ( 1 )
Phenotypes
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v8.0)
Homo sapiens (Human) (2)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\CPSF6
13 of 15
Yes
Yes
Hsap\CPSF7
9 of 15
No
Yes
Model Organism Orthologs (via DIOPT v8.0)
Mus musculus (laboratory mouse) (2)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Cpsf6
12 of 15
Yes
Yes
Mmus\Cpsf7
9 of 15
No
Yes
Rattus norvegicus (Norway rat) (2)
Rnor\Cpsf6
12 of 13
Yes
Yes
Rnor\Cpsf7
8 of 13
No
Yes
Xenopus tropicalis (Western clawed frog) (2)
Xtro\cpsf6
7 of 12
Yes
Yes
Xtro\cpsf7
6 of 12
No
Yes
Danio rerio (Zebrafish) (1)
Drer\cpsf6
12 of 15
Yes
Yes
Caenorhabditis elegans (Nematode, roundworm) (1)
Cele\cfim-2
11 of 15
Yes
Yes
Arabidopsis thaliana (thale-cress) (2)
Atha\AT5G55670
6 of 9
Yes
Yes
Atha\AT1G13190
4 of 9
No
Yes
Saccharomyces cerevisiae (Brewer's yeast) (0)
No records found.
Schizosaccharomyces pombe (Fission yeast) (1)
Spom\SPBC660.15
1 of 12
Yes
No
Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( EOG09190F0H )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00003722
Drosophila simulans
Dsim\GD13000
Drosophila sechellia
Dsec\GM24949
Drosophila erecta
Dere\GG15090
Drosophila yakuba
Dyak\GE21315
Drosophila ananassae
Dana\GF23561
Drosophila pseudoobscura pseudoobscura
Dpse\GA20165
Drosophila persimilis
Dper\GL22549
Drosophila willistoni
Dwil\GK16997
Drosophila virilis
Dvir\GJ13124
Drosophila mojavensis
Dmoj\GI12981
Drosophila grimshawi
Dgri\GH15377
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG09150BQT )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17015450
Glossina morsitans
Tsetse fly
Gmor\GMOY001549
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_07773
Mayetiola destructor
Hessian fly
Mdes\Mdes003649
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL017164
Anopheles darlingi
American malaria mosquito
Adar\ADAC010301
Anopheles gambiae
Malaria mosquito
Agam\AGAP005062
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ004892
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W0J9P )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA009409
Danaus plexippus
Monarch butterfly
Dple\DPOGS205980-PA
Heliconius melpomene
Postman butterfly
Hmel\HMEL017652
Apis florea
Little honeybee
Aflo\3054552292
Apis mellifera
Western honey bee
Amel\GB46014
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP24737
Bombus terrestris
Buff-tailed bumblebee
Bter\15214449
Linepithema humile
Argentine ant
Lhum\LH18807
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:001342
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG012132
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_03898
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_01379
Tribolium castaneum
Red flour beetle
Tcas\GLEAN_08014
Pediculus humanus
Human body louse
Phum\PHUM544500
Rhodnius prolixus
Kissing bug
Rpro\RPRC009232
Rhodnius prolixus
Kissing bug
Rpro\RPRC012139
Cimex lectularius
Bed bug
Clec\CLEC004008
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI007967
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI068574
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_03273
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X0JE4 )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Ixodes scapularis
Black-legged tick
Isca\ISCW006578
Stegodyphus mimosarum
African social velvet spider
Smim\KFM79694.1
Tetranychus urticae
Two-spotted spider mite
Turt\tetur06g01000
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_224649
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G0CVC )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Cpsf6L
Gallus gallus
Domestic chicken
Ggal\CPSF6
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000013298
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v8.0)
Drosophila melanogaster (Fruit fly) (0)
No records found.
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Model Summary Ribbon
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 0 )
    Human Ortholog
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    CPSF6; cleavage and polyadenylation specific factor 6
    13 of 15
    604979
        CPSF7; cleavage and polyadenylation specific factor 7
        9 of 15
            Functional Complementation Data
            Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
            Interactions
            Summary of Physical Interactions
            esyN Network Diagram
            Show neighbor-neighbor interactions:
            Select Layout:
            Legend:
            Protein
            RNA
            Selected Interactor(s)
            Interactions Browser
            View in Interactions Browser
            Please see the Physical Interaction reports below for full details
            protein-protein
            Physical Interaction
            Assay
            References
            Cpsf6 - AGO1
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - Bap60
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - CG10077
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - CG17002
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - CG2017
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - CG2199
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - CG3008
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - CG34159
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - CG7542
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - Cdk8
            anti tag coimmunoprecipitation, anti tag western blot, enzymatic study, autoradiography, experimental knowledge based
            (Tang et al., 2018, Guruharsha et al., 2011)
            Cpsf6 - Cpsf5
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - CstF64
            anti bait coimmunoprecipitation, western blot, peptide massfingerprinting
            (Sabath et al., 2013)
            Cpsf6 - Doa
            enzymatic study, autoradiography, anti tag coimmunoprecipitation, anti tag western blot
            (Tang et al., 2018)
            Cpsf6 - Hrb27C
            anti tag coimmunoprecipitation, Identification by mass spectrometry, anti tag western blot
            (Bansal et al., 2020)
            Cpsf6 - Larp4B
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED10
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED11
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED14
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED15
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED16
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED17
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED18
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED20
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED23
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED24
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED25
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED27
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED30
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED4
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED6
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED7
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - MED8
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - Pa1
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - Psi
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - Pten
            anti tag coimmunoprecipitation, Identification by mass spectrometry
            (Vinayagam et al., 2016)
            Cpsf6 - Ptip
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - RasGAP1
            anti tag coimmunoprecipitation, peptide massfingerprinting
            (Friedman et al., 2011)
            Cpsf6 - S6kII
            anti tag coimmunoprecipitation, Identification by mass spectrometry
            (Vinayagam et al., 2016)
            Cpsf6 - Sec23
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - Sec24AB
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - Snr1
            experimental knowledge based, anti bait coimmunoprecipitation, western blot
            (Yu et al., 2018, Guruharsha et al., 2011)
            Cpsf6 - Usp10
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - ZAP3
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - boca
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - brm
            anti bait coimmunoprecipitation, Identification by mass spectrometry, experimental knowledge based, western blot
            (Yu et al., 2018, Guruharsha et al., 2011)
            Cpsf6 - dsh
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - ebi
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - enc
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - ix
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - kel
            proximity-dependent biotin identification, Identification by mass spectrometry
            (Mannix et al., 2019)
            Cpsf6 - mor
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - osa
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - skd
            experimental knowledge based
            (Guruharsha et al., 2011)
            Cpsf6 - yki
            anti tag coimmunoprecipitation, anti tag western blot, peptide massfingerprinting
            (Kwon et al., 2013, Kwon et al., 2013)
            RNA-protein
            Physical Interaction
            Assay
            References
            Cpsf6 - Atg1
            anti tag coimmunoprecipitation, quantitative reverse transcription pcr
            (Tang et al., 2018)
            Cpsf6 - Atg8a
            anti tag coimmunoprecipitation, quantitative reverse transcription pcr
            (Tang et al., 2018)
            Summary of Genetic Interactions
            esyN Network Diagram
            esyN Network Key:
            Suppression
            Enhancement
            View in Interactions Browser
            Please look at the allele data for full details of the genetic interactions
            Starting gene(s)
            Interaction type
            Interacting gene(s)
            Reference
            Starting gene(s)
            Interaction type
            Interacting gene(s)
            Reference
            Atg1
            suppressible
            Cpsf6
            (Tang et al., 2018)
            Cdk8
            suppressible
            Cpsf6
            (Tang et al., 2018)
            Doa
            suppressible
            Cpsf6
            (Tang et al., 2018)
            Tsc1|gig
            suppressible
            Cpsf6
            (Tang et al., 2018)
            External Data
            Linkouts
            BioGRID - A database of protein and genetic interactions.
            DroID - A comprehensive database of gene and protein interactions.
            InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
            MIST (protein-protein) - An integrated Molecular Interaction Database
            Pathways
            Signaling Pathways (FlyBase)
            Metabolic Pathways
            External Data
            Linkouts
            KEGG Pathways - Wiring diagrams of molecular interactions, reactions and relations.
            Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
            Genomic Location and Detailed Mapping Data
            Chromosome (arm)
            3L
            Recombination map

            3-24

            Cytogenetic map
            66C5-66C6
            Sequence location
            3L:8,310,493..8,315,502 [-]
            FlyBase Computed Cytological Location
            Cytogenetic map
            Evidence for location
            66C5-66C6
            Limits computationally determined from genome sequence between P{lacW}l(3)L0139L0139 and P{PZ}Gug03928&P{EP}CG6745EP595b
            Experimentally Determined Cytological Location
            Cytogenetic map
            Notes
            References
            Experimentally Determined Recombination Data
            Location

            3-24

            (FlyBase, 2016)

            3-19.5

            (Comeron et al., 2012)
            Left of (cM)
            Right of (cM)
            Notes
            Stocks and Reagents
            Stocks (5)
            Genomic Clones (16)
             

            Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

            cDNA Clones (211)
             

            Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

            cDNA clones, fully sequenced
            BDGP DGC clones
            Other clones
              Drosophila Genomics Resource Center cDNA clones

              For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

              cDNA Clones, End Sequenced (ESTs)
              BDGP DGC clones
              Other clones
              RNAi and Array Information
              Linkouts
              DRSC - Results frm RNAi screens
              GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
              Antibody Information
              Laboratory Generated Antibodies
               
              Commercially Available Antibodies
               
              Other Information
              Relationship to Other Genes
              Source for database identify of

              Source for identity of: Cpsf6 CG7185

              (Tang et al., 2018)
              Source for database merge of
              Additional comments
              Other Comments
              Origin and Etymology
              Discoverer
              Etymology

              The gene is named 'Cpsf6' based on the closest human ortholog.

              (Tang et al., 2018)
              Identification
              External Crossreferences and Linkouts ( 42 )
              Sequence Crossreferences
              NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
              GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
              GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
              RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
              UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
              UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
              Other crossreferences
              BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
              Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
              Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
              Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
              Flygut - An atlas of the Drosophila adult midgut
              GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
              InterPro - A database of protein families, domains and functional sites
              KEGG Genes - Molecular building blocks of life in the genomic space.
              modMine - A data warehouse for the modENCODE project
              Linkouts
              BioGRID - A database of protein and genetic interactions.
              DroID - A comprehensive database of gene and protein interactions.
              DRSC - Results frm RNAi screens
              FLIGHT - Cell culture data for RNAi and other high-throughput technologies
              FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
              FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
              FlyMine - An integrated database for Drosophila genomics
              InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
              KEGG Pathways - Wiring diagrams of molecular interactions, reactions and relations.
              MIST (protein-protein) - An integrated Molecular Interaction Database
              Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
              Synonyms and Secondary IDs (10)
              Datasets (0)
              Study focus (0)
              Experimental Role
              Project
              Project Type
              Title
              References (64)