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Gene: Dmel\Cpsf6

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General Information
Symbol
Dmel\Cpsf6
Species
D. melanogaster
Name
Cleavage and polyadenylation specific factor 6
Annotation Symbol
CG7185
Feature Type
protein_coding_gene
FlyBase ID
FBgn0035872
Gene Model Status
Current
Stock Availability
6 publicly available
Gene Snapshot
In progress.Contributions welcome.
Other Summaries
Key Links
Genomic Location
Cytogenetic map
66C5-66C6
Sequence location
3L:8,310,493..8,315,502 [-]
Recombination map
3-24
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI Genome Data Viewer
UCSC Genome Browser
Ensembl Genome Browser
PopFly Genome Browser
GO Summary Ribbons
Families, Domains and Molecular Function
Gene Group Membership (FlyBase)
Protein Family (UniProt, Sequence Similarities)
Belongs to the RRM CPSF6/7 family. (Q9VSH4)
Protein Domains/Motifs
InterPro
RNA recognition motif domain; Nucleotide-binding alpha-beta plait domain superfamily; Cleavage and polyadenylation specificity factor subunit CG7185-like; CPSF6/7 family; RNA-binding domain superfamily
Molecular Function (see GO section for details)
Experimental Evidence
-
Predictions / Assertions
mRNA binding; nucleic acid binding
Summaries
UniProt Contributed Function Data
May play a role in pre-mRNA 3'-processing.
(UniProt, Q9VSH4)
Gene Model and Products
Number of Transcripts
2
Number of Unique Polypeptides
2

Please see the GBrowse view of Dmel\Cpsf6 or the JBrowse view of Dmel\Cpsf6 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.45
Gene model reviewed during 5.56
Sequence Ontology: Class of Gene
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
Cpsf6-RA
FBtr0076710
NM_139949
2862
652
Cpsf6-RB
FBtr0304628
NM_001259736
2721
605
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
Cpsf6-PA
FBpp0076433
71.1
652
10.13
NP_648206
AAF50445
Cpsf6-PB
FBpp0293170
66.1
605
9.86
NP_001246665
AFH04336
Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Nucleotide / Polypeptide Records
 
UniProt
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Cpsf6 using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Gene Ontology (4 terms)
Molecular Function (2 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (2 terms)
CV Term
Evidence
References
mRNA binding
inferred from sequence or structural similarity
(Lasko, 2000)
nucleic acid binding
inferred from electronic annotation with InterPro:IPR000504
(assigned by InterPro )
(FlyBase Curators et al., 2004-)
Biological Process (1 term)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
regulation of alternative mRNA splicing, via spliceosome
inferred from high throughput mutant phenotype
(Park et al., 2004)
Terms Based on Predictions or Assertions (0 terms)
Cellular Component (1 term)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
nucleus
inferred by curator from GO:0000381
(Park et al., 2004)
Expression Data
Transcript Expression
Polypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
adult stage
adult head
• membrane
(Aradska et al., 2015)
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\Cpsf6 in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyExpress - Embryonic expression images (BDGP data)
  • Stages(s) 1-3
  • Stages(s) 4-6
  • Stages(s) 9-10
  • Stages(s) 11-12
  • Stages(s) 13-16
FlyBase Wiki
Image Based Resources
Alleles, Insertions, Transgenic Constructs and Phenotypes
Classical and Insertion Alleles ( 5 )
For All Classical and Insertion Alleles Show
 
Allele of Cpsf6
Class
Mutagen
Associated Insertion
Stocks
Known lesion
Cpsf6DG14101
0
Yes
Cpsf6CB-6365-3
    1
    Yes
    Cpsf6CC00645
    1
    Yes
    Cpsf6e04468
    1
    Yes
    Cpsf6091
    0
    Yes
    Other relevant insertions
    insertion of enhancer trap binary system
    Name
    Expression Data
    PBac{IT.GAL4}2058-G4
    No
    Transgenic Constructs ( 7 )
    Deletions and Duplications ( 1 )
    Summary of Phenotypes
    Orthologs
    Downloads
    Download All DIOPT Orthologs
    Download All OrthoDB Orthologs
    Human Orthologs (via DIOPT v7.1)
    Homo sapiens (Human) (2)
    Species\Gene Symbol
    Score
    Best Score
    Best Reverse Score
    Source
    Compara
    eggNOG
    Hieranoid
    Homologene
    Inparanoid
    Isobase
    OMA
    OrthoDB
    OrthoFinder
    OrthoInspector
    orthoMCL
    Panther
    Phylome
    RoundUp
    TreeFam
    ZFIN
    Alignment
    Complementation?
    Transgene?
    Hsap\CPSF6
    13 of 15
    Yes
    Yes
    Hsap\CPSF7
    10 of 15
    No
    Yes
    Model Organism Orthologs (via DIOPT v7.1)
    Mus musculus (laboratory mouse) (2)
    Species\Gene Symbol
    Score
    Best Score
    Best Reverse Score
    Source
    Compara
    eggNOG
    Hieranoid
    Homologene
    Inparanoid
    Isobase
    OMA
    OrthoDB
    OrthoFinder
    OrthoInspector
    orthoMCL
    Panther
    Phylome
    RoundUp
    TreeFam
    ZFIN
    Alignment
    Complementation?
    Transgene?
    Mmus\Cpsf6
    13 of 15
    Yes
    Yes
    Mmus\Cpsf7
    9 of 15
    No
    Yes
    Rattus norvegicus (Norway rat) (2)
    Rnor\Cpsf6
    12 of 13
    Yes
    Yes
    Rnor\Cpsf7
    9 of 13
    No
    Yes
    Xenopus tropicalis (Western clawed frog) (2)
    Xtro\cpsf6
    6 of 12
    Yes
    Yes
    Xtro\cpsf7
    6 of 12
    Yes
    Yes
    Danio rerio (Zebrafish) (1)
    Drer\cpsf6
    12 of 15
    Yes
    Yes
    Caenorhabditis elegans (Nematode, roundworm) (1)
    Cele\cfim-2
    11 of 15
    Yes
    Yes
    Arabidopsis thaliana (thale-cress) (2)
    Atha\AT5G55670
    5 of 9
    Yes
    Yes
    Atha\AT1G13190
    3 of 9
    No
    Yes
    Saccharomyces cerevisiae (Brewer's yeast) (0)
    No orthologs reported.
    Schizosaccharomyces pombe (Fission yeast) (1)
    Spom\SPBC660.15
    1 of 12
    Yes
    No
    Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG09190F0H )
    Organism
    Common Name
    Gene
    AAA Syntenic Ortholog
    Multiple Dmel Genes in this Orthologous Group
    Drosophila melanogaster
    fruit fly
    Dmel\Cpsf6
    Drosophila suzukii
    Spotted wing Drosophila
    Dsuz\DS10_00003722
    Drosophila simulans
    Dsim\GD13000
    Drosophila sechellia
    Dsec\GM24949
    Drosophila erecta
    Dere\GG15090
    Drosophila yakuba
    Dyak\GE21315
    Drosophila ananassae
    Dana\GF23561
    Drosophila pseudoobscura pseudoobscura
    Dpse\GA20165
    Drosophila persimilis
    Dper\GL22549
    Drosophila willistoni
    Dwil\GK16997
    Drosophila virilis
    Dvir\GJ13124
    Drosophila mojavensis
    Dmoj\GI12981
    Drosophila grimshawi
    Dgri\GH15377
    Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG09150BQT )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Musca domestica
    House fly
    Mdoa\17015450
    Glossina morsitans
    Tsetse fly
    Gmor\GMOY001549
    Lucilia cuprina
    Australian sheep blowfly
    Lcup\FF38_07773
    Mayetiola destructor
    Hessian fly
    Mdes\Mdes003649
    Aedes aegypti
    Yellow fever mosquito
    Aaeg\AAEL017164
    Anopheles darlingi
    American malaria mosquito
    Adar\ADAC010301
    Anopheles gambiae
    Malaria mosquito
    Agam\AGAP005062
    Culex quinquefasciatus
    Southern house mosquito
    Cqui\CPIJ004892
    Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W0J9P )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Bombyx mori
    Silkmoth
    Bmor\BGIBMGA009409
    Danaus plexippus
    Monarch butterfly
    Dple\DPOGS205980-PA
    Heliconius melpomene
    Postman butterfly
    Hmel\HMEL017652
    Apis florea
    Little honeybee
    Aflo\3054552292
    Apis mellifera
    Western honey bee
    Amel\GB46014
    Bombus impatiens
    Common eastern bumble bee
    Bimp\BIMP24737
    Bombus terrestris
    Buff-tailed bumblebee
    Bter\15214449
    Linepithema humile
    Argentine ant
    Lhum\LH18807
    Megachile rotundata
    Alfalfa leafcutting bee
    Mrot\MROTU:001342
    Nasonia vitripennis
    Parasitic wasp
    Nvit\Nasvi2EG012132
    Dendroctonus ponderosae
    Mountain pine beetle
    Dpod\YQE_03898
    Dendroctonus ponderosae
    Mountain pine beetle
    Dpod\YQE_01379
    Tribolium castaneum
    Red flour beetle
    Tcas\GLEAN_08014
    Pediculus humanus
    Human body louse
    Phum\PHUM544500
    Rhodnius prolixus
    Kissing bug
    Rpro\RPRC009232
    Rhodnius prolixus
    Kissing bug
    Rpro\RPRC012139
    Cimex lectularius
    Bed bug
    Clec\CLEC004008
    Acyrthosiphon pisum
    Pea aphid
    Apim\ACYPI007967
    Acyrthosiphon pisum
    Pea aphid
    Apim\ACYPI068574
    Zootermopsis nevadensis
    Nevada dampwood termite
    Znev\Znev_03273
    Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X0JE4 )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Ixodes scapularis
    Black-legged tick
    Isca\ISCW006578
    Stegodyphus mimosarum
    African social velvet spider
    Smim\KFM79694.1
    Tetranychus urticae
    Two-spotted spider mite
    Turt\tetur06g01000
    Daphnia pulex
    Water flea
    Dpux\DAPPUDRAFT_224649
    Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G0CVC )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Strongylocentrotus purpuratus
    Purple sea urchin
    Spur\Sp-Cpsf6L
    Gallus gallus
    Domestic chicken
    Ggal\CPSF6
    Gallus gallus
    Domestic chicken
    Ggal\ENSGALG00000013298
    Human Disease Model Data
    FlyBase Human Disease Model Reports
      Alleles Reported to Model Human Disease (Disease Ontology)
      Download
      Models ( 0 )
      Allele
      Disease
      Evidence
      References
      Interactions ( 0 )
      Allele
      Disease
      Interaction
      References
      Comments ( 0 )
       
      Human Orthologs (via DIOPT v7.1)
      Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
      Homo sapiens (Human)
      Gene name
      Score
      OMIM
      OMIM Phenotype
      Complementation?
      Transgene?
      CPSF6; cleavage and polyadenylation specific factor 6
      13 of 15
      604979
        CPSF7; cleavage and polyadenylation specific factor 7
        10 of 15
          Functional Complementation Data
          Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
          Interactions
          Summary of Physical Interactions
          esyN Network Diagram
          Show neighbor-neighbor interactions:
          Select Layout:
          Legend:
          Protein
          RNA
          Selected Interactor(s)
          Interactions Browser
          View in Interactions Browser
          Please look at the Interaction Group reports for full details of the physical interactions
          protein-protein
          Interacting group
          Assay
          References
          Cpsf6 - AGO1
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - Bap60
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - CG10077
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - CG17002
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - CG2017
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - CG2199
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - CG3008
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - CG34159
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - CG7542
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - Cdk8
          enzymatic study, autoradiography, experimental knowledge based, anti tag coimmunoprecipitation, anti tag western blot
          (Tang et al., 2018, Guruharsha et al., 2011)
          Cpsf6 - Cpsf5
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - CstF64
          anti bait coimmunoprecipitation, western blot, peptide massfingerprinting
          (Sabath et al., 2013)
          Cpsf6 - Doa
          anti tag coimmunoprecipitation, anti tag western blot, enzymatic study, autoradiography
          (Tang et al., 2018)
          Cpsf6 - Larp4B
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED10
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED11
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED14
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED15
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED16
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED17
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED18
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED20
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED23
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED24
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED25
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED27
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED30
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED4
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED6
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED7
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - MED8
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - Pa1
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - Psi
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - Pten
          anti tag coimmunoprecipitation, Identification by mass spectrometry
          (Vinayagam et al., 2016)
          Cpsf6 - Ptip
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - RasGAP1
          anti tag coimmunoprecipitation, peptide massfingerprinting
          (Friedman et al., 2011)
          Cpsf6 - S6kII
          anti tag coimmunoprecipitation, Identification by mass spectrometry
          (Vinayagam et al., 2016)
          Cpsf6 - Sec23
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - Sec24AB
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - Snr1
          experimental knowledge based, anti bait coimmunoprecipitation, western blot
          (Yu et al., 2018, Guruharsha et al., 2011)
          Cpsf6 - Usp10
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - ZAP3
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - boca
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - brm
          anti bait coimmunoprecipitation, western blot, experimental knowledge based, Identification by mass spectrometry
          (Yu et al., 2018, Guruharsha et al., 2011)
          Cpsf6 - dsh
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - ebi
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - enc
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - ix
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - mor
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - osa
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - skd
          experimental knowledge based
          (Guruharsha et al., 2011)
          Cpsf6 - yki
          anti tag coimmunoprecipitation, peptide massfingerprinting, anti tag western blot
          (Kwon et al., 2013, Kwon et al., 2013)
          RNA-protein
          Interacting group
          Assay
          References
          Cpsf6 - Atg1
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          (Tang et al., 2018)
          Cpsf6 - Atg8a
          anti tag coimmunoprecipitation, quantitative reverse transcription pcr
          (Tang et al., 2018)
          Summary of Genetic Interactions
          esyN Network Diagram
          esyN Network Key:
          Suppression
          Enhancement
          View in Interactions Browser
          Please look at the allele data for full details of the genetic interactions
          Starting gene(s)
          Interaction type
          Interacting gene(s)
          Reference
          Starting gene(s)
          Interaction type
          Interacting gene(s)
          Reference
          Atg1
          suppressible
          Cpsf6
          (Tang et al., 2018)
          Cdk8
          suppressible
          Cpsf6
          (Tang et al., 2018)
          Doa
          suppressible
          Cpsf6
          (Tang et al., 2018)
          Tsc1|gig
          suppressible
          Cpsf6
          (Tang et al., 2018)
          External Data
          Linkouts
          BioGRID - A database of protein and genetic interactions.
          DroID - A comprehensive database of gene and protein interactions.
          InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
          Pathways
          Gene Group - Pathway Membership (FlyBase)
          External Data
          Linkouts
          KEGG Pathways - Wiring diagrams of molecular interactions, reactions and relations.
          Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
          Genomic Location and Detailed Mapping Data
          Chromosome (arm)
          3L
          Recombination map
          3-24
          Cytogenetic map
          66C5-66C6
          Sequence location
          3L:8,310,493..8,315,502 [-]
          FlyBase Computed Cytological Location
          Cytogenetic map
          Evidence for location
          66C5-66C6
          Limits computationally determined from genome sequence between P{lacW}l(3)L0139L0139 and P{PZ}Gug03928&P{EP}CG6745EP595b
          Experimentally Determined Cytological Location
          Cytogenetic map
          Notes
          References
          Experimentally Determined Recombination Data
          Location
          3-24
          (FlyBase, 2016)
          3-19.5
          (Comeron et al., 2012)
          Left of (cM)
          Right of (cM)
          Notes
          Stocks and Reagents
          Stocks (6)
          Genomic Clones (16)
           

          Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

          cDNA Clones (211)
           

          Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

          cDNA clones, fully sequences
          BDGP DGC clones
          Other clones
            Drosophila Genomics Resource Center cDNA clones

            For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

            cDNA Clones, End Sequenced (ESTs)
            BDGP DGC clones
            Other clones
            RNAi and Array Information
            Linkouts
            DRSC - Results frm RNAi screens
            GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
            Antibody Information
            Laboratory Generated Antibodies
             
            Commercially Available Antibodies
             
            Other Information
            Relationship to Other Genes
            Source for database identify of
            Source for identity of: Cpsf6 CG7185
            (Tang et al., 2018)
            Source for database merge of
            Additional comments
            Other Comments
            Origin and Etymology
            Discoverer
            Etymology
            The gene is named 'Cpsf6' based on the closest human ortholog.
            (Tang et al., 2018)
            Identification
            External Crossreferences and Linkouts ( 40 )
            Crossreferences
            NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
            GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
            GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
            RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
            UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
            UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
            Other crossreferences
            BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
            InterPro - A database of protein families, domains and functional sites
            KEGG Pathways - Wiring diagrams of molecular interactions, reactions and relations.
            Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
            Linkouts
            BioGRID - A database of protein and genetic interactions.
            Drosophila Genomics Resource Center - Drosophila Genomics Resource Center cDNA clones
            DroID - A comprehensive database of gene and protein interactions.
            DRSC - Results frm RNAi screens
            Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
            FLIGHT - Cell culture data for RNAi and other high-throughput technologies
            FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
            Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
            Flygut - An atlas of the Drosophila adult midgut
            FlyMine - An integrated database for Drosophila genomics
            GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
            InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
            KEGG Genes - Molecular building blocks of life in the genomic space.
            modMine - A data warehouse for the modENCODE project
            Synonyms and Secondary IDs (9)
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