FB2019_05, released Oct 15, 2019

Gene: Dmel\CG13305

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General Information
Symbol
Dmel\CG13305
Species
D. melanogaster
Name
Annotation Symbol
CG13305
Feature Type
protein_coding_gene
FlyBase ID
FBgn0035921
Gene Model Status
Current
Stock Availability
2 publicly available
Gene Snapshot
Insufficient genetic data for FlyBase to solicit a summary. [Date last reviewed: 2016-06-30]
Other Summaries
Key Links
Genomic Location
Cytogenetic map
66D9-66D9
Sequence location
3L:8,644,916..8,646,822 [-]
Recombination map
3-26
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Protein Family (UniProt)
-
Protein Signatures (InterPro)
    -
    Molecular Function (GO)
    [Detailed GO annotations]
    Experimental Evidence
    -
    Predictions / Assertions
    -
    Summaries
    Gene Model and Products
    Number of Transcripts
    2
    Number of Unique Polypeptides
    2

    Please see the GBrowse view of Dmel\CG13305 or the JBrowse view of Dmel\CG13305 for information on other features

    To submit a correction to a gene model please use the Contact FlyBase form

    Protein Domains (via Pfam)
    Isoform displayed:
    Pfam protein domains
    InterPro name
    classification
    start
    end
    Protein Domains (via SMART)
    Isoform displayed:
    SMART protein domains
    InterPro name
    classification
    start
    end
    Comments on Gene Model
    Multiphase exon postulated: exon reading frame differs in alternative transcripts.
    Gene model reviewed during 5.46
    Sequence Ontology: Class of Gene
    nuclear_gene
    protein_coding_gene
    Transcript Data
    Annotated Transcripts
    Name
    FlyBase ID
    RefSeq ID
    Length (nt)
    Assoc. CDS (aa)
    CG13305-RB
    FBtr0273348
    NM_001144441
    1364
    323
    CG13305-RC
    FBtr0273349
    NM_139993
    1138
    203
    Additional Transcript Data and Comments
    Reported size (kB)
    Comments
    External Data
    Crossreferences
    Polypeptide Data
    Annotated Polypeptides
    Name
    FlyBase ID
    Predicted MW (kDa)
    Length (aa)
    Theoretical pI
    RefSeq ID
    GenBank
    CG13305-PB
    FBpp0271856
    37.8
    323
    9.92
    NP_001137913
    ACL83268
    CG13305-PC
    FBpp0271857
    23.2
    203
    10.19
    NP_648250
    AAF50381
    Polypeptides with Identical Sequences

    None of the polypeptides share 100% sequence identity.

    Additional Polypeptide Data and Comments
    Reported size (kDa)
    Comments
    External Data
    Crossreferences
    Linkouts
    Sequences Consistent with the Gene Model
    Mapped Features

    Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\CG13305 using the Feature Mapper tool.

    External Data
    Crossreferences
    Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
    Linkouts
    Gene Ontology (0 terms)
    Molecular Function (0 terms)
    Terms Based on Experimental Evidence (0 terms)
    Terms Based on Predictions or Assertions (0 terms)
    Biological Process (0 terms)
    Terms Based on Experimental Evidence (0 terms)
    Terms Based on Predictions or Assertions (0 terms)
    Cellular Component (0 terms)
    Terms Based on Experimental Evidence (0 terms)
    Terms Based on Predictions or Assertions (0 terms)
    Expression Data
    Expression Summary Ribbons
    Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
    For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
    Transcript Expression
    in situ
    Stage
    Tissue/Position (including subcellular localization)
    Reference
    embryonic stage 13 -- 16
    dorsal sensory complex proper primordium

    Comment: reported as dorsal/lateral sensory complexes

    (Fisher et al., 2012)
    embryonic brain
    (Fisher et al., 2012)
    embryonic head sensory system
    (Fisher et al., 2012)
    embryonic/larval nervous system
    (Fisher et al., 2012)
    mushroom body primordium

    Comment: reported as embryonic central brain mushroom body

    (Fisher et al., 2012)
    sensory nervous system primordium
    (Fisher et al., 2012)
    ventral nerve cord
    (Fisher et al., 2012)
    ventral sensory complex primordium
    (Fisher et al., 2012)
    Additional Descriptive Data
    Marker for
     
    Subcellular Localization
    CV Term
    Polypeptide Expression
    Additional Descriptive Data
    Marker for
     
    Subcellular Localization
    CV Term
    Evidence
    References
    Expression Deduced from Reporters
    High-Throughput Expression Data
    Associated Tools

    GBrowse - Visual display of RNA-Seq signals

    View Dmel\CG13305 in GBrowse 2
    RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
    Bulk Downloads
    RNA-Seq RPKM values for all genes
    Reference
    See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
    Developmental Proteome: Life Cycle
    Developmental Proteome: Embryogenesis
    External Data and Images
    Linkouts
    BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
    FLIGHT - Cell culture data for RNAi and other high-throughput technologies
    FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
    Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
    Flygut - An atlas of the Drosophila adult midgut
    Images
    FlyExpress - Embryonic expression images (BDGP data)
    • Stages(s) 1-3
    • Stages(s) 11-12
    • Stages(s) 13-16
    FlyBase Wiki
    Image Based Resources
    Alleles, Insertions, and Transgenic Constructs
    Classical and Insertion Alleles ( 0 )
    For All Classical and Insertion Alleles Show
     
    Other relevant insertions
    Transgenic Constructs ( 2 )
    For All Alleles Carried on Transgenic Constructs Show
    Transgenic constructs containing/affecting coding region of CG13305
    Transgenic constructs containing regulatory region of CG13305
    Deletions and Duplications ( 0 )
    Phenotypes
    For more details about a specific phenotype click on the relevant allele symbol.
    Lethality
    Allele
    viable, with Dcr-2UAS.cDa, Scer\GAL4elav.PLu
    viable, with Scer\GAL4Mef2.PR
    viable, with Scer\GAL4pnr-MD237
    Phenotype manifest in
    Allele
    Orthologs
    Downloads
    Download All DIOPT Orthologs
    Download All OrthoDB Orthologs
    Human Orthologs (via DIOPT v7.1)
    Homo sapiens (Human) (0)
    No records found.
    Model Organism Orthologs (via DIOPT v7.1)
    Mus musculus (laboratory mouse) (0)
    No records found.
    Rattus norvegicus (Norway rat) (0)
    No records found.
    Xenopus tropicalis (Western clawed frog) (0)
    No records found.
    Danio rerio (Zebrafish) (0)
    No records found.
    Caenorhabditis elegans (Nematode, roundworm) (0)
    No records found.
    Arabidopsis thaliana (thale-cress) (0)
    No records found.
    Saccharomyces cerevisiae (Brewer's yeast) (0)
    No records found.
    Schizosaccharomyces pombe (Fission yeast) (0)
    No records found.
    Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG09190F5C )
    Organism
    Common Name
    Gene
    AAA Syntenic Ortholog
    Multiple Dmel Genes in this Orthologous Group
    Drosophila melanogaster
    fruit fly
    Dmel\CG13305
    Drosophila suzukii
    Spotted wing Drosophila
    Dsuz\DS10_00003762
    Drosophila simulans
    Dsim\GD12970
    Drosophila sechellia
    Dsec\GM24923
    Drosophila erecta
    Dere\GG15066
    Drosophila yakuba
    Dyak\GE21290
    Drosophila ananassae
    Dana\GF10153
    Drosophila pseudoobscura pseudoobscura
    Dpse\GA12185
    Drosophila persimilis
    Dper\GL10293
    Drosophila willistoni
    Dwil\GK17475
    Drosophila virilis
    Dvir\GJ12308
    Drosophila mojavensis
    Dmoj\GI12415
    Drosophila grimshawi
    Dgri\GH22561
    Drosophila grimshawi
    Dgri\GH16147
    Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG09150AJB )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Musca domestica
    House fly
    Mdoa\17025164
    Glossina morsitans
    Tsetse fly
    Gmor\GMOY005669
    Lucilia cuprina
    Australian sheep blowfly
    Lcup\FF38_00137
    Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W0BZO )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Bombyx mori
    Silkmoth
    Bmor\BGIBMGA010857
    Danaus plexippus
    Monarch butterfly
    Dple\DPOGS211399-PA
    Heliconius melpomene
    Postman butterfly
    Hmel\HMEL008085
    Apis florea
    Little honeybee
    Aflo\3422579844
    Apis mellifera
    Western honey bee
    Amel\GB49938
    Bombus impatiens
    Common eastern bumble bee
    Bimp\BIMP12991
    Bombus terrestris
    Buff-tailed bumblebee
    Bter\15213674
    Megachile rotundata
    Alfalfa leafcutting bee
    Mrot\MROTU:001e2a
    Nasonia vitripennis
    Parasitic wasp
    Nvit\Nasvi2EG017775
    Dendroctonus ponderosae
    Mountain pine beetle
    Dpod\YQE_06939
    Tribolium castaneum
    Red flour beetle
    Tcas\TC006640
    Acyrthosiphon pisum
    Pea aphid
    Apim\ACYPI21841
    Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X0BXG )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Ixodes scapularis
    Black-legged tick
    Isca\ISCW020129
    Daphnia pulex
    Water flea
    Dpux\DAPPUDRAFT_336270
    Daphnia pulex
    Water flea
    Dpux\DAPPUDRAFT_253313
    Daphnia pulex
    Water flea
    Dpux\DAPPUDRAFT_244841
    Daphnia pulex
    Water flea
    Dpux\DAPPUDRAFT_104345
    Daphnia pulex
    Water flea
    Dpux\DAPPUDRAFT_336272
    Daphnia pulex
    Water flea
    Dpux\DAPPUDRAFT_319515
    Daphnia pulex
    Water flea
    Dpux\DAPPUDRAFT_225089
    Daphnia pulex
    Water flea
    Dpux\DAPPUDRAFT_325531
    Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( None identified )
    No non-Arthropod Metazoa orthologies identified
    Paralogs
    Downloads
    Download All DIOPT Paralogs
    Paralogs (via DIOPT v7.1)
    Drosophila melanogaster (Fruit fly) (0)
    No records found.
    Human Disease Associations
    FlyBase Human Disease Model Reports
      Disease Model Summary Ribbon
      Disease Ontology (DO) Annotations
      Models Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Evidence
      References
      Potential Models Based on Orthology ( 0 )
      Human Ortholog
      Disease
      Evidence
      References
      Modifiers Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Interaction
      References
      Comments on Models/Modifiers Based on Experimental Evidence ( 0 )
       
      Disease Associations of Human Orthologs (via DIOPT v7.1 and OMIM)
      Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
      Homo sapiens (Human)
      Gene name
      Score
      OMIM
      OMIM Phenotype
      DO term
      Complementation?
      Transgene?
      Functional Complementation Data
      Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
      Interactions
      Summary of Physical Interactions
      esyN Network Diagram
      Interactions Browser
      Summary of Genetic Interactions
      esyN Network Diagram
      Starting gene(s)
      Interaction type
      Interacting gene(s)
      Reference
      Starting gene(s)
      Interaction type
      Interacting gene(s)
      Reference
      External Data
      Linkouts
      DroID - A comprehensive database of gene and protein interactions.
      Pathways
      Gene Group - Pathway Membership (FlyBase)
      External Data
      Linkouts
      Genomic Location and Detailed Mapping Data
      Chromosome (arm)
      3L
      Recombination map
      3-26
      Cytogenetic map
      66D9-66D9
      Sequence location
      3L:8,644,916..8,646,822 [-]
      FlyBase Computed Cytological Location
      Cytogenetic map
      Evidence for location
      66D9-66D9
      Limits computationally determined from genome sequence between P{lacW}foij8E8 and P{PZ}SrpRβrK561&P{lacW}l(3)j5B6j5B6
      Experimentally Determined Cytological Location
      Cytogenetic map
      Notes
      References
      Experimentally Determined Recombination Data
      Location
      3-26
      (FlyBase, 2016)
      3-20.5
      (Comeron et al., 2012)
      Left of (cM)
      Right of (cM)
      Notes
      Stocks and Reagents
      Stocks (2)
      Genomic Clones (12)
       

      Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

      cDNA Clones (3)
       

      Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

      cDNA clones, fully sequences
      BDGP DGC clones
      Other clones
      Drosophila Genomics Resource Center cDNA clones

      For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

      cDNA Clones, End Sequenced (ESTs)
      BDGP DGC clones
        Other clones
        RNAi and Array Information
        Linkouts
        DRSC - Results frm RNAi screens
        GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
        Antibody Information
        Laboratory Generated Antibodies
         
        Commercially Available Antibodies
         
        Other Information
        Relationship to Other Genes
        Source for database identify of
        Source for database merge of
        Source for merge of: CG13305 BcDNA:RE33542
        (FlyBase, 1996-)
        Additional comments
        Source for merge of CG13305 BcDNA:RE33542 was a shared cDNA ( date:030728 ).
        (FlyBase, 1996-)
        Other Comments
        Shows particularly robust cycling of transcription in adult heads, as assessed by expression analysis using high density oligonucleotide arrays with probe generated during three 12-point time course experiments over the course of 6 days. Shows significant change of expression pattern in circadian mutant background; decreased expression in per01, tim01 and ClkJrk background.
        (Claridge-Chang et al., 2001)
        Origin and Etymology
        Discoverer
        Etymology
        Identification
        External Crossreferences and Linkouts ( 27 )
        Sequence Crossreferences
        NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
        GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
        GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
        RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
        UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
        Other crossreferences
        BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
        Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
        Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
        Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
        Flygut - An atlas of the Drosophila adult midgut
        GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
        iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
        KEGG Genes - Molecular building blocks of life in the genomic space.
        modMine - A data warehouse for the modENCODE project
        Linkouts
        DroID - A comprehensive database of gene and protein interactions.
        DRSC - Results frm RNAi screens
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        FlyMine - An integrated database for Drosophila genomics
        Synonyms and Secondary IDs (3)
        Reported As
        Symbol Synonym
        BcDNA:RE33542
        CG13305
        (Ando et al., 2019, Napoletano et al., 2011, Keleman et al., 2009.8.5)
        CT32600
        (Ceriani et al., 2002)
        Name Synonyms
        Secondary FlyBase IDs
        • FBgn0063034
        Datasets (0)
        Study focus (0)
        Experimental Role
        Project
        Project Type
        Title
        References (15)