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Gene Dmel\Jarid2

General Information
Symbol	Dmel\Jarid2	Species	D. melanogaster
Name	Jumonji, AT rich interactive domain 2	Annotation symbol	CG3654
Feature type	protein_coding_gene	FlyBase ID	FBgn0036004
Gene Model Status	Current	Stock availability	9 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	67B9-67B10	Sequence location	3L:9,470,138..9,479,630 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Jumonji, AT rich interactive domain 2 is referred to in FlyBase by the symbol Dmel\Jarid2 (CG3654, FBgn0036004). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: DNA binding. There is experimental evidence that it is involved in the biological process: regulation of histone H3-K27 methylation. 13 alleles are reported. The phenotypes of these alleles are annotated with: leg; polytene chromosome. It has one annotated transcript and one annotated polypeptide. Protein features are: ARID/BRIGHT DNA-binding domain; AT hook, DNA-binding motif; JmjC domain; Transcription factor jumonji, JmjN; Zinc finger, C5HC2-type. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1634092_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Jarid2. Gene sequence location is 3L:9470138..9479630.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 67B9-67B10   Limits computationally determined from genome sequence between P{EP}Hsp26EP3336&P{EP}Hsp26EP3315 and P{PZ}fry02240
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Jarid2 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Jarid2-RD FBtr0076468  NM_140067   8463   2351
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Jarid2-PD   FBpp0076196   252.5   2351   9.68     NP_648324   AAF50256
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • ARID/BRIGHT DNA-binding domain (IPR001606) JmjC domain (IPR003347) Transcription factor jumonji, JmjN (IPR003349) AT hook, DNA-binding motif (IPR017956) Zinc finger, C5HC2-type (IPR004198)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA439226   AA539531   AA695683   AA949876   AE014296 AAF50256   AI062999   AI113610   AI389025   AI519785   AW940342   AW943474   AY075418   AY089499 AAL90237   BG632064   BT015274 AAT94503   CL706560   CO178180   CO191685   CO196147   CO263021   CO274476   CO283241   CO288880   CO291449   CO303412   CO308454   CO324488   CO338141   CO342305   CO345268   CO345535   CR938443   CR938536   CZ480898   EC051900   EC053895   EC054400   EC054919   EC056269   EC059209   EC064816   EC065439   EC070696   EC081110   EC197292   EC198158   EC198177   EC210825   EC214454   EC215056   EC217308   EC221745   EC223793   EC228531   EC239233   EC256034   EC256422   EC258661   GH943098   GH952303   GH954327   GH960154   GH967240   GH967763   GH970101   GH975319   GH980396   GH981502   GH981599
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VT00 Q6AWH4 Q8SXP6
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism | intense & ubiquitous   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | intense & ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | intense & ubiquitous   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic brain   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Wasbrough et al., 2010)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
ESC/E(Z) complex inferred from direct assay (Herz et al., 2012) nuclear euchromatin inferred from direct assay (Sasai et al., 2007) polytene chromosome inferred from direct assay (Herz et al., 2012)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    299.7 Larval Midgut    142.6 Larval Hindgut    214.1 Larval Malpighian Tubules    158.5 Larval Fat Body    101.2 Larval Salivary Gland    436 Larval Trachea    391.225 Larval Carcass    200.2 Adult Head    114.8 Adult Eye    250.05 Adult Brain    307.7 Adult Thoracic-Abdominal Ganglion    209.6 Adult Crop    152.8 Adult Midgut    115.9 Adult Hindgut    146.2 Adult Malpighian Tubules    227.2 Adult Fat Body    144.7 Adult Salivary Gland    313.3 Adult Heart    196.3 Adult VirginFemale Spermatheca    167.2 Adult InseminatedFemale Spermatheca    166.2 Adult Ovary    595.2 Adult Testis    32.1 Adult Male Accessory Gland    225.3 Adult Carcass    143.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    299.7 Larval Midgut    142.6 Larval Hindgut    214.1 Larval Malpighian Tubules    158.5 Larval Fat Body    101.2 Larval Salivary Gland    436 Larval Trachea    391.225 Larval Carcass    200.2 Adult Head    114.8 Adult Eye    250.05 Adult Brain    307.7 Adult Thoracic-Abdominal Ganglion    209.6 Adult Crop    152.8 Adult Midgut    115.9 Adult Hindgut    146.2 Adult Malpighian Tubules    227.2 Adult Fat Body    144.7 Adult Salivary Gland    313.3 Adult Heart    196.3 Adult VirginFemale Spermatheca    167.2 Adult InseminatedFemale Spermatheca    166.2 Adult Ovary  (595.2) Adult Testis    32.1 Adult Male Accessory Gland    225.3 Adult Carcass    143.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    299.7 Larval Midgut    142.6 Larval Hindgut    214.1 Larval Malpighian Tubules    158.5 Larval Fat Body    101.2 Larval Salivary Gland    436 Larval Trachea    391.225 Larval Carcass    200.2 Adult Head    114.8 Adult Eye    250.05 Adult Brain    307.7 Adult Thoracic-Abdominal Ganglion    209.6 Adult Crop    152.8 Adult Midgut    115.9 Adult Hindgut    146.2 Adult Malpighian Tubules    227.2 Adult Fat Body    144.7 Adult Salivary Gland    313.3 Adult Heart    196.3 Adult VirginFemale Spermatheca    167.2 Adult InseminatedFemale Spermatheca    166.2 Adult Ovary    595.2 Adult Testis    32.1 Adult Male Accessory Gland    225.3 Adult Carcass    143.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    299.7 Larval Midgut    142.6 Larval Hindgut    214.1 Larval Malpighian Tubules    158.5 Larval Fat Body    101.2 Larval Salivary Gland    436 Larval Trachea    391.225 Larval Carcass    200.2 Adult Head    114.8 Adult Eye    250.05 Adult Brain    307.7 Adult Thoracic-Abdominal Ganglion    209.6 Adult Crop    152.8 Adult Midgut    115.9 Adult Hindgut    146.2 Adult Malpighian Tubules    227.2 Adult Fat Body    144.7 Adult Salivary Gland    313.3 Adult Heart    196.3 Adult VirginFemale Spermatheca    167.2 Adult InseminatedFemale Spermatheca    166.2 Adult Ovary    595.2 Adult Testis    32.1 Adult Male Accessory Gland    225.3 Adult Carcass    143.1 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    299.7 Larval Midgut    142.6 Larval Hindgut    214.1 Larval Malpighian Tubules    158.5 Larval Fat Body    101.2 Larval Salivary Gland    436 Larval Trachea    391.225 Larval Carcass    200.2 Adult Head    114.8 Adult Eye    250.05 Adult Brain    307.7 Adult Thoracic-Abdominal Ganglion    209.6 Adult Crop    152.8 Adult Midgut    115.9 Adult Hindgut    146.2 Adult Malpighian Tubules    227.2 Adult Fat Body    144.7 Adult Salivary Gland    313.3 Adult Heart    196.3 Adult VirginFemale Spermatheca    167.2 Adult InseminatedFemale Spermatheca    166.2 Adult Ovary    595.2 Adult Testis    32.1 Adult Male Accessory Gland    225.3 Adult Carcass    143.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    299.7 Larval Midgut    142.6 Larval Hindgut    214.1 Larval Malpighian Tubules    158.5 Larval Fat Body    101.2 Larval Salivary Gland    436 Larval Trachea    391.225 Larval Carcass    200.2 Adult Head    114.8 Adult Eye    250.05 Adult Brain    307.7 Adult Thoracic-Abdominal Ganglion    209.6 Adult Crop    152.8 Adult Midgut    115.9 Adult Hindgut    146.2 Adult Malpighian Tubules    227.2 Adult Fat Body    144.7 Adult Salivary Gland    313.3 Adult Heart    196.3 Adult VirginFemale Spermatheca    167.2 Adult InseminatedFemale Spermatheca    166.2 Adult Ovary  595.2 Adult Testis    32.1 Adult Male Accessory Gland    225.3 Adult Carcass    143.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    299.7 Larval Midgut    142.6 Larval Hindgut    214.1 Larval Malpighian Tubules    158.5 Larval Fat Body    101.2 Larval Salivary Gland    436 Larval Trachea    391.225 Larval Carcass    200.2 Adult Head    114.8 Adult Eye    250.05 Adult Brain    307.7 Adult Thoracic-Abdominal Ganglion    209.6 Adult Crop    152.8 Adult Midgut    115.9 Adult Hindgut    146.2 Adult Malpighian Tubules    227.2 Adult Fat Body    144.7 Adult Salivary Gland    313.3 Adult Heart    196.3 Adult VirginFemale Spermatheca    167.2 Adult InseminatedFemale Spermatheca    166.2 Adult Ovary    595.2 Adult Testis    32.1 Adult Male Accessory Gland    225.3 Adult Carcass    143.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    299.7 Larval Midgut    142.6 Larval Hindgut    214.1 Larval Malpighian Tubules    158.5 Larval Fat Body    101.2 Larval Salivary Gland    436 Larval Trachea    391.225 Larval Carcass    200.2 Adult Head    114.8 Adult Eye    250.05 Adult Brain    307.7 Adult Thoracic-Abdominal Ganglion    209.6 Adult Crop    152.8 Adult Midgut    115.9 Adult Hindgut    146.2 Adult Malpighian Tubules    227.2 Adult Fat Body    144.7 Adult Salivary Gland    313.3 Adult Heart    196.3 Adult VirginFemale Spermatheca    167.2 Adult InseminatedFemale Spermatheca    166.2 Adult Ovary    595.2 Adult Testis    32.1 Adult Male Accessory Gland    225.3 Adult Carcass    143.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    114.8   NA  Eye    250.05   NA  Brain    307.7   299.7  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    209.6   NA  Crop    152.8   142.6  Midgut    115.9   214.1  Hindgut    146.2   158.5  Malpighian Tubules    227.2   101.2  Fat Body    144.7   436  Salivary Gland    313.3   NA  Heart    196.3   391.225  Trachea    NA   NA  VirginFemale Spermatheca    167.2   NA  InseminatedFemale Spermatheca    166.2   NA  Ovary    595.2   NA  Testis    32.1   NA  Male Accessory Gland    225.3   200.2  Carcass    143.1 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3    29 central nervous system, pupae P8    15 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    9 head, mated 1-day male    15 head, mated 4-day male    16 head, mated 20-day male    17 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    13 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    5 digestive system, 4-day adult    11 digestive system, 20-day adult    8 fat body, larvae L3 wandering    7 fat body, white prepupae    12 fat body, pupae P8    4 carcass, larvae L3 wandering    21 carcass, 1-day adult    8 carcass, 4-day adult    11 carcass, 20-day adult    8 ovary, virgin 4-day female    78 ovary, mated 4-day female    84 testis, mated 4-day male    1 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3  (29) central nervous system, pupae P8    15 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    9 head, mated 1-day male    15 head, mated 4-day male    16 head, mated 20-day male    17 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    13 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    5 digestive system, 4-day adult    11 digestive system, 20-day adult    8 fat body, larvae L3 wandering    7 fat body, white prepupae    12 fat body, pupae P8    4 carcass, larvae L3 wandering    21 carcass, 1-day adult    8 carcass, 4-day adult    11 carcass, 20-day adult    8 ovary, virgin 4-day female  (78) ovary, mated 4-day female  (84) testis, mated 4-day male    1 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3    29 central nervous system, pupae P8    15 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    9 head, mated 1-day male    15 head, mated 4-day male    16 head, mated 20-day male    17 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    13 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    5 digestive system, 4-day adult    11 digestive system, 20-day adult    8 fat body, larvae L3 wandering    7 fat body, white prepupae    12 fat body, pupae P8    4 carcass, larvae L3 wandering    21 carcass, 1-day adult    8 carcass, 4-day adult    11 carcass, 20-day adult    8 ovary, virgin 4-day female    78 ovary, mated 4-day female    84 testis, mated 4-day male    1 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3    29 central nervous system, pupae P8    15 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    9 head, mated 1-day male    15 head, mated 4-day male    16 head, mated 20-day male    17 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    13 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    5 digestive system, 4-day adult    11 digestive system, 20-day adult    8 fat body, larvae L3 wandering    7 fat body, white prepupae    12 fat body, pupae P8    4 carcass, larvae L3 wandering    21 carcass, 1-day adult    8 carcass, 4-day adult    11 carcass, 20-day adult    8 ovary, virgin 4-day female    78 ovary, mated 4-day female    84 testis, mated 4-day male    1 accessory gland, mated 4-day male    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3    29 central nervous system, pupae P8    15 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    9 head, mated 1-day male    15 head, mated 4-day male    16 head, mated 20-day male    17 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    13 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    5 digestive system, 4-day adult    11 digestive system, 20-day adult    8 fat body, larvae L3 wandering    7 fat body, white prepupae    12 fat body, pupae P8    4 carcass, larvae L3 wandering    21 carcass, 1-day adult    8 carcass, 4-day adult    11 carcass, 20-day adult    8 ovary, virgin 4-day female    78 ovary, mated 4-day female    84 testis, mated 4-day male    1 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3  29 central nervous system, pupae P8    15 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    9 head, mated 1-day male    15 head, mated 4-day male    16 head, mated 20-day male    17 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    13 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    5 digestive system, 4-day adult    11 digestive system, 20-day adult    8 fat body, larvae L3 wandering    7 fat body, white prepupae    12 fat body, pupae P8    4 carcass, larvae L3 wandering    21 carcass, 1-day adult    8 carcass, 4-day adult    11 carcass, 20-day adult    8 ovary, virgin 4-day female  (78) ovary, mated 4-day female  (84) testis, mated 4-day male    1 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3    29 central nervous system, pupae P8    15 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    9 head, mated 1-day male    15 head, mated 4-day male    16 head, mated 20-day male    17 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    13 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    5 digestive system, 4-day adult    11 digestive system, 20-day adult    8 fat body, larvae L3 wandering    7 fat body, white prepupae    12 fat body, pupae P8    4 carcass, larvae L3 wandering    21 carcass, 1-day adult    8 carcass, 4-day adult    11 carcass, 20-day adult    8 ovary, virgin 4-day female    78 ovary, mated 4-day female    84 testis, mated 4-day male    1 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3    29 central nervous system, pupae P8    15 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    9 head, mated 1-day male    15 head, mated 4-day male    16 head, mated 20-day male    17 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    13 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    5 digestive system, 4-day adult    11 digestive system, 20-day adult    8 fat body, larvae L3 wandering    7 fat body, white prepupae    12 fat body, pupae P8    4 carcass, larvae L3 wandering    21 carcass, 1-day adult    8 carcass, 4-day adult    11 carcass, 20-day adult    8 ovary, virgin 4-day female    78 ovary, mated 4-day female    84 testis, mated 4-day male    1 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    58 embryo 02-04hr    46 embryo 04-06hr    32 embryo 06-08hr    27 embryo 08-10hr    24 embryo 10-12hr    12 embryo 12-14hr    18 embryo 14-16hr    19 embryo 16-18hr    17 embryo 18-20hr    11 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    9 larva L2    8 larva L3 12hr old    7 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    15 white prepupae new    17 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    6 adult male 01day    7 adult male 05day    7 adult male 30day    8 adult female 01day    23 adult female 05day    45 adult female 30day    45 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (58) embryo 02-04hr  (46) embryo 04-06hr  (32) embryo 06-08hr  (27) embryo 08-10hr    24 embryo 10-12hr    12 embryo 12-14hr    18 embryo 14-16hr    19 embryo 16-18hr    17 embryo 18-20hr    11 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    9 larva L2    8 larva L3 12hr old    7 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    15 white prepupae new    17 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    6 adult male 01day    7 adult male 05day    7 adult male 30day    8 adult female 01day    23 adult female 05day  (45) adult female 30day  (45) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    58 embryo 02-04hr    46 embryo 04-06hr    32 embryo 06-08hr    27 embryo 08-10hr    24 embryo 10-12hr    12 embryo 12-14hr    18 embryo 14-16hr    19 embryo 16-18hr    17 embryo 18-20hr    11 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    9 larva L2    8 larva L3 12hr old    7 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    15 white prepupae new    17 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    6 adult male 01day    7 adult male 05day    7 adult male 30day    8 adult female 01day    23 adult female 05day    45 adult female 30day    45 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    58 embryo 02-04hr    46 embryo 04-06hr    32 embryo 06-08hr    27 embryo 08-10hr    24 embryo 10-12hr    12 embryo 12-14hr    18 embryo 14-16hr    19 embryo 16-18hr    17 embryo 18-20hr    11 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    9 larva L2    8 larva L3 12hr old    7 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    15 white prepupae new    17 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    6 adult male 01day    7 adult male 05day    7 adult male 30day    8 adult female 01day    23 adult female 05day    45 adult female 30day    45 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    58 embryo 02-04hr    46 embryo 04-06hr    32 embryo 06-08hr    27 embryo 08-10hr    24 embryo 10-12hr    12 embryo 12-14hr    18 embryo 14-16hr    19 embryo 16-18hr    17 embryo 18-20hr    11 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    9 larva L2    8 larva L3 12hr old    7 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    15 white prepupae new    17 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    6 adult male 01day    7 adult male 05day    7 adult male 30day    8 adult female 01day    23 adult female 05day    45 adult female 30day    45 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (58) embryo 02-04hr  (46) embryo 04-06hr  32 embryo 06-08hr  27 embryo 08-10hr    24 embryo 10-12hr    12 embryo 12-14hr    18 embryo 14-16hr    19 embryo 16-18hr    17 embryo 18-20hr    11 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    9 larva L2    8 larva L3 12hr old    7 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    15 white prepupae new    17 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    6 adult male 01day    7 adult male 05day    7 adult male 30day    8 adult female 01day    23 adult female 05day  (45) adult female 30day  (45) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    58 embryo 02-04hr    46 embryo 04-06hr    32 embryo 06-08hr    27 embryo 08-10hr    24 embryo 10-12hr    12 embryo 12-14hr    18 embryo 14-16hr    19 embryo 16-18hr    17 embryo 18-20hr    11 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    9 larva L2    8 larva L3 12hr old    7 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    15 white prepupae new    17 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    6 adult male 01day    7 adult male 05day    7 adult male 30day    8 adult female 01day    23 adult female 05day    45 adult female 30day    45 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    58 embryo 02-04hr    46 embryo 04-06hr    32 embryo 06-08hr    27 embryo 08-10hr    24 embryo 10-12hr    12 embryo 12-14hr    18 embryo 14-16hr    19 embryo 16-18hr    17 embryo 18-20hr    11 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    9 larva L2    8 larva L3 12hr old    7 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    15 white prepupae new    17 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    6 adult male 01day    7 adult male 05day    7 adult male 30day    8 adult female 01day    23 adult female 05day    45 adult female 30day    45 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    10 embryonic 1182-4H    16 embryonic GM2    11 embryonic Kc167    13 embryonic S1    10 embryonic S3    17 leg disc CME L1    14 wing disc CME-W2    16 wing disc ML-DmD8    19 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    25 wing disc ML-DmD21    7 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    19 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    20 ovary fGS/OSS    31 ovary OSC    17 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    10 embryonic 1182-4H    16 embryonic GM2    11 embryonic Kc167    13 embryonic S1    10 embryonic S3    17 leg disc CME L1    14 wing disc CME-W2    16 wing disc ML-DmD8    19 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    25 wing disc ML-DmD21    7 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    19 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    20 ovary fGS/OSS  (31) ovary OSC    17 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    10 embryonic 1182-4H    16 embryonic GM2    11 embryonic Kc167    13 embryonic S1    10 embryonic S3    17 leg disc CME L1    14 wing disc CME-W2    16 wing disc ML-DmD8    19 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    25 wing disc ML-DmD21    7 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    19 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    20 ovary fGS/OSS    31 ovary OSC    17 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    10 embryonic 1182-4H    16 embryonic GM2    11 embryonic Kc167    13 embryonic S1    10 embryonic S3    17 leg disc CME L1    14 wing disc CME-W2    16 wing disc ML-DmD8    19 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    25 wing disc ML-DmD21    7 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    19 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    20 ovary fGS/OSS    31 ovary OSC    17 ovary OSS    14 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    10 embryonic 1182-4H    16 embryonic GM2    11 embryonic Kc167    13 embryonic S1    10 embryonic S3    17 leg disc CME L1    14 wing disc CME-W2    16 wing disc ML-DmD8    19 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    25 wing disc ML-DmD21    7 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    19 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    20 ovary fGS/OSS    31 ovary OSC    17 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    10 embryonic 1182-4H    16 embryonic GM2    11 embryonic Kc167    13 embryonic S1    10 embryonic S3    17 leg disc CME L1    14 wing disc CME-W2    16 wing disc ML-DmD8    19 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    25 wing disc ML-DmD21    7 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    19 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    20 ovary fGS/OSS  31 ovary OSC    17 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    10 embryonic 1182-4H    16 embryonic GM2    11 embryonic Kc167    13 embryonic S1    10 embryonic S3    17 leg disc CME L1    14 wing disc CME-W2    16 wing disc ML-DmD8    19 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    25 wing disc ML-DmD21    7 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    19 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    20 ovary fGS/OSS    31 ovary OSC    17 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    10 embryonic 1182-4H    16 embryonic GM2    11 embryonic Kc167    13 embryonic S1    10 embryonic S3    17 leg disc CME L1    14 wing disc CME-W2    16 wing disc ML-DmD8    19 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    25 wing disc ML-DmD21    7 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3    22 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    19 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    20 ovary fGS/OSS    31 ovary OSC    17 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    21 cold shock, 4-day adult    15 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    61 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    46 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    54 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    51 Caffeine 25 mg/ml 48 hrs, 4-day adult    26 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    36 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    21 cold shock, 4-day adult    15 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult  (27) Cadmium 100 mM 48 hrs, 4-day adult  (61) Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult  (46) Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3  (54) Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (51) Caffeine 25 mg/ml 48 hrs, 4-day adult  26 Paraquat 5 mM 48 hrs, 4-day adult  (40) Paraquat 10 mM 48 hrs, 4-day adult  (36) Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    21 cold shock, 4-day adult    15 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    61 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    46 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    54 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    51 Caffeine 25 mg/ml 48 hrs, 4-day adult    26 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    36 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    21 cold shock, 4-day adult    15 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    61 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    46 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    54 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    51 Caffeine 25 mg/ml 48 hrs, 4-day adult    26 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    36 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    21 cold shock, 4-day adult    15 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    61 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    46 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    54 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    51 Caffeine 25 mg/ml 48 hrs, 4-day adult    26 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    36 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    21 cold shock, 4-day adult    15 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult  27 Cadmium 100 mM 48 hrs, 4-day adult  (61) Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult  (46) Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3  (54) Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (51) Caffeine 25 mg/ml 48 hrs, 4-day adult  26 Paraquat 5 mM 48 hrs, 4-day adult  (40) Paraquat 10 mM 48 hrs, 4-day adult  (36) Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    21 cold shock, 4-day adult    15 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    61 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    46 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    54 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    51 Caffeine 25 mg/ml 48 hrs, 4-day adult    26 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    36 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    21 cold shock, 4-day adult    15 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    61 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    46 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    54 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    51 Caffeine 25 mg/ml 48 hrs, 4-day adult    26 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    36 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_13 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	BDGP expression data • GH09982 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036004 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3654-RD
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | larval stage (with Df(3L)AC1) Jarid2e03131 lethal | pupal stage (with Df(3L)AC1) Jarid2e03131 lethal | pupal stage | recessive Jarid2e03131 viable Jarid2EY02717 viable, with Scer\GAL4pnr-MD237 Jarid2GD11039 Sterility Allele fertile Jarid2EY02717 Other Phenotypes Allele suppressor of variegation Jarid2e03131 visible | dominant Jarid2EY02717-REV Phenotype manifest in Allele leg Jarid2e03131 polytene chromosome, with Scer\GAL4Act5C.PI Jarid2LA00681 wing vein | ectopic Jarid2EY02717-REV
Classical Alleles ( 6 )
For All Classical Alleles Show
Allele of Jarid2 Class Mutagen Stocks Known lesion Jarid2LA00681 2 -- Jarid2e03131 loss of function allele piggyBac transposase 1 -- Jarid2EY02717 P-element activity 1 -- Jarid2MB00996 1 -- Jarid2EY00142 0 -- Jarid2EY02717-REV Delta2-3 0 Yes
Alleles Carried on Transgenic Constructs ( 7 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Jarid2 Class Mutagen Stocks Known lesion Jarid2GD11039 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Jarid2HMS00679 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Jarid2HMS02022 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Jarid2JF02081 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Jarid2KK101518 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes Jarid2NIG.3654-3R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes Jarid2T:Zzzz\FLAG,T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{KK101518} NA P{NIG.3654-3R} NA P{TRiP.HMS00679} NA P{TRiP.HMS02022} NA characterization construct P{FLAG-HA-Jarid2} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}Jarid2EY00142 NA P{EPgy2}Jarid2EY02717 NA P{Mae-UAS.6.11}Jarid2LA00681 NA miscellaneous insertions P{PTT-GB}CB04163 NA PBac{RB}Jarid2e03131 NA insertion of enhancer trap binary system Mi{ET1}Jarid2MB00996 No
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 4 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
regulation of histone H3-K27 methylation inferred from mutant phenotype (Herz et al., 2012)
Cellular Component
CV term Evidence References
ESC/E(Z) complex inferred from direct assay (Herz et al., 2012) nuclear euchromatin inferred from direct assay (Sasai et al., 2007) polytene chromosome inferred from direct assay (Herz et al., 2012)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
DNA binding inferred from electronic annotation with InterPro:IPR001606, InterPro:IPR017956 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
nucleus inferred from sequence or structural similarity with UniProtKB:Q62315 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Jarid2 allele Gene References unspecified Ppt1 (Buff et al., 2007)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 64495 DroID - A comprehensive database of gene and protein interactions. • FBgn0036004 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39103
Orthologs
OrthoDB Orthologs (44) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG60GD9F Dipteran inclusive ortholog search EOG6M920M Insect inclusive ortholog search EOG60K6TT Arthropod inclusive ortholog search EOG669P8V Metazoa inclusive ortholog search EOG61P6D0
Orthologs in Drosophila Species (EOG60GD9F)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Muc91C     Drosophila melanogaster fruit fly  Dmel\Jarid2     Drosophila simulans   Dsim\GD16134   Y Drosophila simulans   Dsim\GD14188 Y Y Drosophila sechellia   Dsec\GM25154 Y Y Drosophila erecta   Dere\GG15383 Y Y Drosophila erecta   Dere\GG17392   Y Drosophila yakuba   Dyak\GE20846 Y Y Drosophila yakuba   Dyak\GE23108   Y Drosophila ananassae   Dana\GF25139 Y Y Drosophila pseudoobscura pseudoobscura   Dpse\GA28524 Y Y Drosophila persimilis   Dper\GL17885   Y Drosophila willistoni   Dwil\GK20560 Y Y Drosophila virilis   Dvir\GJ12176 Y Y Drosophila mojavensis   Dmoj\moj32 Y Y Drosophila grimshawi   Dgri\GH15241 Y Y
Orthologs in non-Drosophila Dipterans (EOG6M920M)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL010971 Y Anopheles gambiae Malaria mosquito  Agam\AGAP005541 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ003939 Y
Orthologs in non-Dipteran Insects (EOG60K6TT)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB42496 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG016148 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH22494 Y Atta cephalotes Leafcutter ant  Acep\ACEP10597 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO19294 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL17424 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL17423 Y Linepithema humile Argentine ant  Lhum\LH18379 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB20833 Y Solenopsis invicta Red fire ant  Sinv\SINV22538 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI004761 Y Bombyx mori Silkmoth  Bmor\BGIBMGA002097 Y Bombyx mori Silkmoth  Bmor\BGIBMGA002098 Y Pediculus humanus Human body louse  Phum\PHUM538030 Y Tribolium castaneum Red flour beetle  Tcas\TC002791 Y
Orthologs in non-Insect Arthropods (EOG669P8V)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\CHS Y Ixodes scapularis Deer tick  Isca\ISCW006964 Y
Orthologs in non-Arthropod Metazoa (EOG61P6D0)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_017276gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_023640gn Y Danio rerio Zebrafish  Drer\jarid2a Y Danio rerio Zebrafish  Drer\jarid2b Y Xenopus tropicalis Western clawed frog  Xtro\jarid2 Y Gallus gallus Domestic chicken  Ggal\JARID2 Y Mus musculus House mouse  Mmus\Jarid2 Y Homo sapiens Human  Hsap\JARID2 Y
Human Orthologs (1)
Gene OMIM HGNC Hsap\JARID2
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD14188 Drosophila sechellia Dsec\GM25154 Drosophila erecta Dere\GG15383 Drosophila yakuba Dyak\GE20846 Drosophila ananassae Dana\GF25139 Drosophila pseudoobscura pseudoobscura Dpse\GA28524 Drosophila willistoni Dwil\GK20560 Drosophila virilis Dvir\GJ12176 Drosophila mojavensis Dmoj\moj32 Drosophila grimshawi Dgri\GH15241
Stocks & Reagents
Stocks Listed in FlyBase ( 9 )
Bloomington	26184 y1 v1; P{TRiP.JF02081}attP2 40855 y1 v1; P{TRiP.HMS02022}attP40/CyO 22958 y1 w67c23; Mi{ET1}Jarid2MB00996 20067 y1 w67c23; P{EPgy2}Jarid2EY02717 32891 y1 sc* v1; P{TRiP.HMS00679}attP2 22187 y1 w*; P{Mae-UAS.6.11}Jarid2LA00681
Harvard	- PBac{RB}Jarid2e03131
Kyoto	120681 y* w*; P{Mae-UAS.6.11}Jarid2LA00681
VDRC	v21700 w1118; P{GD11039}v21700/TM3
Genomic Clones ( 2 )
	BACR01E20 BACR12K04 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 57 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH09982 LD17709 LD39559
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH20102 GM03276 LD13729
Other clones	12876 13228 32861 43251 66133 101545 117588 121266 154786 180836 214277.75 214503.78 214509.66 CK01.7A.A10 CK01.69C.G11 CK01.103D.D9 CK01.112A.H1 CK01.124A.C2 EC31665 EC051900 EC053895 EC054400 EC054919 EC056269 EK001229 EK055626 EK069606 EK079415 EK087113 EK114231 EK162655 EK193936 EK241407 EK258230 EN16031 EP14436 EP21722 EP22232 GH02401 LD29927 RP004116330 RP004146142 RP004230310 RP004231322 RP004241469 RP004252295 RP004345680 RP004432286 RP004463529 RP004470200 RP004548448
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0036004 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39103
Antibody Information
	polyclonal (Sasai et al., 2007)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Jarid2 CG3654 (Lloret-Llinares et al., 2008)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_140067 RefSeq (Proteins) • NP_648324 DDBJ / EMBL / GenBank • AA539531 AAF50256 AAL90237 AAT94503 AI113610 AI519785 AW940342 AW943474 AY075418 AY089499 BT015274 CL706560 CZ480898 Entrez Gene - A searchable database of RefSeq genes. • 39103 UniProtKB/TrEMBL • Q6AWH4 Q8SXP6 Q9VT00
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • ARID/BRIGHT DNA-binding domain (IPR001606) JmjC domain (IPR003347) Transcription factor jumonji, JmjN (IPR003349) AT hook, DNA-binding motif (IPR017956) Zinc finger, C5HC2-type (IPR004198) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GH09982
Linkouts
	BioGRID - A database of protein and genetic interactions • 64495 DroID - A comprehensive database of gene and protein interactions. • FBgn0036004 DRSC - Results from RNAi screens. • FBgn0036004 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036004 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3654-RD FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0036004 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39103 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39103 modMine - Data generated by the modENCODE project. • FBgn0036004
Synonyms & Secondary IDs ( 7 )
Reported As
Symbol Synonym	CG3654 (Klose et al., 2006, Buszczak et al., 2007, Buff et al., 2007, Stofanko et al., 2008, Perkins et al., 2009.3.31, Lloret-Llinares et al., 2008, Curtis et al., 2011, Gan et al., 2010, Sasai et al., 2007, Ni et al., 2010.12.1, Keleman et al., 2009.8.5, Japanese National Institute of Genetics, 2012.5.21) dJARID2 (Lloret-Llinares et al., 2008) djmj (Sasai et al., 2007) dJmj (Sasai et al., 2007) Jarid2 (Wasbrough et al., 2010, Herz et al., 2012)
Name Synonym	CG3654   jumonji (Sasai et al., 2007) Jumonji, AT rich interactive domain 2
Secondary FlyBase IDs
References ( 29 )
Generate a list of	All references relating to this gene ( 29 )
List References by type	Research paper  ( 9 ) Supplementary material  ( 5 ) Review  ( 1 ) Personal communication to FlyBase  ( 9 ) FlyBase analysis  ( 1 ) Stock list  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 3 )
	Herz et al., 2012, Mol. Cell. Biol. 32(9): 1683--1693 Polycomb repressive complex 2-dependent and -independent functions of jarid2 in transcriptional regulation in Drosophila. [FBrf0218000] Krauchunas et al., 2012, Dev. Biol. 370(1): 125--134 Protein phosphorylation changes reveal new candidates in the regulation of egg activation and early embryogenesis in D. melanogaster. [FBrf0219342] Curtis et al., 2011, Dev. Biol. 350(2): 534--547 Histone lysine demethylases function as co-repressors of SWI/SNF remodeling activities during Drosophila wing development. [FBrf0212876] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...