A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\CG6418

General Information
SymbolDmel\CG6418SpeciesD. melanogaster
NameAnnotation symbolCG6418
Feature typeprotein_coding_geneFlyBase IDFBgn0036104
Gene Model StatusCurrent Stock availability 6 publicly available
Genomic Location
Chromosome (arm)3LRecombination map
Cytogenetic map67F1-67F1Sequence location3L:10,869,415..10,872,135 [-]

Genomic Maps

GBrowse View Help
modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol Dmel\CG6418 (FBgn0036104). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: helicase activity; ATP-dependent RNA helicase activity. The biological processes in which it is involved are not known. 6 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: DEAD-like helicase; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; RNA helicase, ATP-dependent, DEAD-box, conserved site; RNA helicase, DEAD-box type, Q motif. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, larval/adult midgut, larval/adult hindgut, adult fat body, larval/adult salivary gland, larval trachea, adult ovary, adult male accessory gland, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1637497_at partially aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG6418: 13 out of 14 probes fall into this exonic region. Gene sequence location is 3L:10869415..10872135.

hide Recent Updates
Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
Update Feed
Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01
Sequence features
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
67F1-67F1  
Limits computationally determined from genome sequence between P{lacW}tnaL6731 and P{PZ}klu09036  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG6418 for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0076267 FBtr0301658 FBtr0076268 FBtr0076274 FBtr0076269 FBtr0076273 FBpp0111836 FBpp0075996 FBpp0075997 FBpp0290872 FBpp0076003 FBpp0075998 FBpp0076002 FBti0025122 FBti0140001 FBti0074917 FBti0103428 FBti0125618_1 FBti0125618_2
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0076274
  2721
  791
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0076003  
87.3  
791  
6.99  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view CG6418-RB blos4-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0036104


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0036104
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0036104 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 3087
embryo 02-04hr
 
 5010
embryo 04-06hr
 
 4290
embryo 06-08hr
 
 3382
embryo 08-10hr
 
 2879
embryo 10-12hr
 
 2026
embryo 12-14hr
 
 1799
embryo 14-16hr
 
 1763
embryo 16-18hr
 
 1446
embryo 18-20hr
 
 911
embryo 20-22hr
 
 2108
embryo 22-24hr
 
 1703
larva L1
 
 776
larva L2
 
 780
larva L3 12hr old
 
 524
larva L3 puffstage 1-2
 
 612
larva L3 puffstage 3-6
 
 837
larva L3 puffstage 7-9
 
 1030
white prepupae new
 
 1122
white prepupae 12hr
 
 1150
white prepupae 24hr
 
 1526
pupae 2d postWPP
 
 1074
pupae 3d postWPP
 
 712
pupae 4d postWPP
 
 486
adult male 01day
 
 716
adult male 05day
 
 784
adult male 30day
 
 866
adult female 01day
 
 1019
adult female 05day
 
 1693
adult female 30day
 
 1766
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3087)
embryo 02-04hr
 (5010)
embryo 04-06hr
 (4290)
embryo 06-08hr
 (3382)
embryo 08-10hr
 (2879)
embryo 10-12hr
 (2026)
embryo 12-14hr
 (1799)
embryo 14-16hr
 (1763)
embryo 16-18hr
 (1446)
embryo 18-20hr
 (911)
embryo 20-22hr
 (2108)
embryo 22-24hr
 (1703)
larva L1
 (776)
larva L2
 (780)
larva L3 12hr old
 (524)
larva L3 puffstage 1-2
 (612)
larva L3 puffstage 3-6
 (837)
larva L3 puffstage 7-9
 (1030)
white prepupae new
 (1122)
white prepupae 12hr
 (1150)
white prepupae 24hr
 (1526)
pupae 2d postWPP
 (1074)
pupae 3d postWPP
 (712)
pupae 4d postWPP
 (486)
adult male 01day
 (716)
adult male 05day
 (784)
adult male 30day
 (866)
adult female 01day
 (1019)
adult female 05day
 (1693)
adult female 30day
 (1766)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3087)
embryo 02-04hr
 (5010)
embryo 04-06hr
 (4290)
embryo 06-08hr
 (3382)
embryo 08-10hr
 (2879)
embryo 10-12hr
 (2026)
embryo 12-14hr
 (1799)
embryo 14-16hr
 (1763)
embryo 16-18hr
 1446
embryo 18-20hr
 
 911
embryo 20-22hr
 (2108)
embryo 22-24hr
 (1703)
larva L1
 
 776
larva L2
 
 780
larva L3 12hr old
 
 524
larva L3 puffstage 1-2
 
 612
larva L3 puffstage 3-6
 
 837
larva L3 puffstage 7-9
 
 1030
white prepupae new
 
 1122
white prepupae 12hr
 
 1150
white prepupae 24hr
 (1526)
pupae 2d postWPP
 
 1074
pupae 3d postWPP
 
 712
pupae 4d postWPP
 
 486
adult male 01day
 
 716
adult male 05day
 
 784
adult male 30day
 
 866
adult female 01day
 
 1019
adult female 05day
 (1693)
adult female 30day
 (1766)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3087
embryo 02-04hr
 
 5010
embryo 04-06hr
 
 4290
embryo 06-08hr
 
 3382
embryo 08-10hr
 
 2879
embryo 10-12hr
 
 2026
embryo 12-14hr
 
 1799
embryo 14-16hr
 
 1763
embryo 16-18hr
 
 1446
embryo 18-20hr
 
 911
embryo 20-22hr
 
 2108
embryo 22-24hr
 
 1703
larva L1
 
 776
larva L2
 
 780
larva L3 12hr old
 
 524
larva L3 puffstage 1-2
 
 612
larva L3 puffstage 3-6
 
 837
larva L3 puffstage 7-9
 
 1030
white prepupae new
 
 1122
white prepupae 12hr
 
 1150
white prepupae 24hr
 
 1526
pupae 2d postWPP
 
 1074
pupae 3d postWPP
 
 712
pupae 4d postWPP
 
 486
adult male 01day
 
 716
adult male 05day
 
 784
adult male 30day
 
 866
adult female 01day
 
 1019
adult female 05day
 
 1693
adult female 30day
 
 1766
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3087
embryo 02-04hr
 
 5010
embryo 04-06hr
 
 4290
embryo 06-08hr
 
 3382
embryo 08-10hr
 
 2879
embryo 10-12hr
 
 2026
embryo 12-14hr
 
 1799
embryo 14-16hr
 
 1763
embryo 16-18hr
 
 1446
embryo 18-20hr
 
 911
embryo 20-22hr
 
 2108
embryo 22-24hr
 
 1703
larva L1
 
 776
larva L2
 
 780
larva L3 12hr old
 
 524
larva L3 puffstage 1-2
 
 612
larva L3 puffstage 3-6
 
 837
larva L3 puffstage 7-9
 
 1030
white prepupae new
 
 1122
white prepupae 12hr
 
 1150
white prepupae 24hr
 
 1526
pupae 2d postWPP
 
 1074
pupae 3d postWPP
 
 712
pupae 4d postWPP
 
 486
adult male 01day
 
 716
adult male 05day
 
 784
adult male 30day
 
 866
adult female 01day
 
 1019
adult female 05day
 
 1693
adult female 30day
 
 1766
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0036104 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 3087
embryo 02-04hr
 
 5010
embryo 04-06hr
 
 4290
embryo 06-08hr
 
 3382
embryo 08-10hr
 
 2879
embryo 10-12hr
 
 2026
embryo 12-14hr
 
 1799
embryo 14-16hr
 
 1763
embryo 16-18hr
 
 1446
embryo 18-20hr
 
 911
embryo 20-22hr
 
 2108
embryo 22-24hr
 
 1703
larva L1
 
 776
larva L2
 
 780
larva L3 12hr old
 
 524
larva L3 puffstage 1-2
 
 612
larva L3 puffstage 3-6
 
 837
larva L3 puffstage 7-9
 
 1030
white prepupae new
 
 1122
white prepupae 12hr
 
 1150
white prepupae 24hr
 
 1526
pupae 2d postWPP
 
 1074
pupae 3d postWPP
 
 712
pupae 4d postWPP
 
 486
adult male 01day
 
 716
adult male 05day
 
 784
adult male 30day
 
 866
adult female 01day
 
 1019
adult female 05day
 
 1693
adult female 30day
 
 1766
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3087)
embryo 02-04hr
 (5010)
embryo 04-06hr
 (4290)
embryo 06-08hr
 (3382)
embryo 08-10hr
 (2879)
embryo 10-12hr
 (2026)
embryo 12-14hr
 (1799)
embryo 14-16hr
 (1763)
embryo 16-18hr
 (1446)
embryo 18-20hr
 (911)
embryo 20-22hr
 (2108)
embryo 22-24hr
 (1703)
larva L1
 (776)
larva L2
 (780)
larva L3 12hr old
 (524)
larva L3 puffstage 1-2
 (612)
larva L3 puffstage 3-6
 (837)
larva L3 puffstage 7-9
 (1030)
white prepupae new
 (1122)
white prepupae 12hr
 (1150)
white prepupae 24hr
 (1526)
pupae 2d postWPP
 (1074)
pupae 3d postWPP
 (712)
pupae 4d postWPP
 (486)
adult male 01day
 (716)
adult male 05day
 (784)
adult male 30day
 (866)
adult female 01day
 (1019)
adult female 05day
 (1693)
adult female 30day
 (1766)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3087)
embryo 02-04hr
 (5010)
embryo 04-06hr
 (4290)
embryo 06-08hr
 (3382)
embryo 08-10hr
 (2879)
embryo 10-12hr
 2026
embryo 12-14hr
 1799
embryo 14-16hr
 1763
embryo 16-18hr
 1446
embryo 18-20hr
 
 911
embryo 20-22hr
 2108
embryo 22-24hr
 1703
larva L1
 
 776
larva L2
 
 780
larva L3 12hr old
 
 524
larva L3 puffstage 1-2
 
 612
larva L3 puffstage 3-6
 
 837
larva L3 puffstage 7-9
 
 1030
white prepupae new
 
 1122
white prepupae 12hr
 
 1150
white prepupae 24hr
 1526
pupae 2d postWPP
 
 1074
pupae 3d postWPP
 
 712
pupae 4d postWPP
 
 486
adult male 01day
 
 716
adult male 05day
 
 784
adult male 30day
 
 866
adult female 01day
 
 1019
adult female 05day
 1693
adult female 30day
 1766
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3087
embryo 02-04hr
 
 5010
embryo 04-06hr
 
 4290
embryo 06-08hr
 
 3382
embryo 08-10hr
 
 2879
embryo 10-12hr
 
 2026
embryo 12-14hr
 
 1799
embryo 14-16hr
 
 1763
embryo 16-18hr
 
 1446
embryo 18-20hr
 
 911
embryo 20-22hr
 
 2108
embryo 22-24hr
 
 1703
larva L1
 
 776
larva L2
 
 780
larva L3 12hr old
 
 524
larva L3 puffstage 1-2
 
 612
larva L3 puffstage 3-6
 
 837
larva L3 puffstage 7-9
 
 1030
white prepupae new
 
 1122
white prepupae 12hr
 
 1150
white prepupae 24hr
 
 1526
pupae 2d postWPP
 
 1074
pupae 3d postWPP
 
 712
pupae 4d postWPP
 
 486
adult male 01day
 
 716
adult male 05day
 
 784
adult male 30day
 
 866
adult female 01day
 
 1019
adult female 05day
 
 1693
adult female 30day
 
 1766
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3087
embryo 02-04hr
 
 5010
embryo 04-06hr
 
 4290
embryo 06-08hr
 
 3382
embryo 08-10hr
 
 2879
embryo 10-12hr
 
 2026
embryo 12-14hr
 
 1799
embryo 14-16hr
 
 1763
embryo 16-18hr
 
 1446
embryo 18-20hr
 
 911
embryo 20-22hr
 
 2108
embryo 22-24hr
 
 1703
larva L1
 
 776
larva L2
 
 780
larva L3 12hr old
 
 524
larva L3 puffstage 1-2
 
 612
larva L3 puffstage 3-6
 
 837
larva L3 puffstage 7-9
 
 1030
white prepupae new
 
 1122
white prepupae 12hr
 
 1150
white prepupae 24hr
 
 1526
pupae 2d postWPP
 
 1074
pupae 3d postWPP
 
 712
pupae 4d postWPP
 
 486
adult male 01day
 
 716
adult male 05day
 
 784
adult male 30day
 
 866
adult female 01day
 
 1019
adult female 05day
 
 1693
adult female 30day
 
 1766
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0036104


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0036104
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, larval/adult midgut, larval/adult hindgut, adult fat body, larval/adult salivary gland, larval trachea, adult ovary, adult male accessory gland, larval carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0036104 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 416.05
Larval Midgut
 
 100.7
Larval Hindgut
 
 174.2
Larval Malpighian Tubules
 
 91.6
Larval Fat Body
 
 67.6
Larval Salivary Gland
 
 170.8
Larval Trachea
 
 133.625
Larval Carcass
 
 106.275
Adult Head
 
 160
Adult Eye
 
 194.425
Adult Brain
 
 310.2
Adult Thoracic-Abdominal Ganglion
 
 249.8
Adult Crop
 
 87.3
Adult Midgut
 
 139.9
Adult Hindgut
 
 154.4
Adult Malpighian Tubules
 
 89.1
Adult Fat Body
 
 104.1
Adult Salivary Gland
 
 131
Adult Heart
 
 77.325
Adult VirginFemale Spermatheca
 
 94.6
Adult InseminatedFemale Spermatheca
 
 99.3
Adult Ovary
 
 280.3
Adult Testis
 
 71.9
Adult Male Accessory Gland
 
 263.5
Adult Carcass
 
 72.1
Expression Level Scale
 None 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 416.05
Larval Midgut
 
 100.7
Larval Hindgut
 
 174.2
Larval Malpighian Tubules
 
 91.6
Larval Fat Body
 
 67.6
Larval Salivary Gland
 
 170.8
Larval Trachea
 
 133.625
Larval Carcass
 
 106.275
Adult Head
 
 160
Adult Eye
 
 194.425
Adult Brain
 
 310.2
Adult Thoracic-Abdominal Ganglion
 
 249.8
Adult Crop
 
 87.3
Adult Midgut
 
 139.9
Adult Hindgut
 
 154.4
Adult Malpighian Tubules
 
 89.1
Adult Fat Body
 
 104.1
Adult Salivary Gland
 
 131
Adult Heart
 
 77.325
Adult VirginFemale Spermatheca
 
 94.6
Adult InseminatedFemale Spermatheca
 
 99.3
Adult Ovary
 
 280.3
Adult Testis
 
 71.9
Adult Male Accessory Gland
 
 263.5
Adult Carcass
 
 72.1
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 416.05
Larval Midgut
 
 100.7
Larval Hindgut
 
 174.2
Larval Malpighian Tubules
 
 91.6
Larval Fat Body
 
 67.6
Larval Salivary Gland
 
 170.8
Larval Trachea
 
 133.625
Larval Carcass
 
 106.275
Adult Head
 
 160
Adult Eye
 
 194.425
Adult Brain
 
 310.2
Adult Thoracic-Abdominal Ganglion
 
 249.8
Adult Crop
 
 87.3
Adult Midgut
 
 139.9
Adult Hindgut
 
 154.4
Adult Malpighian Tubules
 
 89.1
Adult Fat Body
 
 104.1
Adult Salivary Gland
 
 131
Adult Heart
 
 77.325
Adult VirginFemale Spermatheca
 
 94.6
Adult InseminatedFemale Spermatheca
 
 99.3
Adult Ovary
 
 280.3
Adult Testis
 
 71.9
Adult Male Accessory Gland
 
 263.5
Adult Carcass
 
 72.1
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 416.05
Larval Midgut
 
 100.7
Larval Hindgut
 
 174.2
Larval Malpighian Tubules
 
 91.6
Larval Fat Body
 
 67.6
Larval Salivary Gland
 
 170.8
Larval Trachea
 
 133.625
Larval Carcass
 
 106.275
Adult Head
 
 160
Adult Eye
 
 194.425
Adult Brain
 
 310.2
Adult Thoracic-Abdominal Ganglion
 
 249.8
Adult Crop
 
 87.3
Adult Midgut
 
 139.9
Adult Hindgut
 
 154.4
Adult Malpighian Tubules
 
 89.1
Adult Fat Body
 
 104.1
Adult Salivary Gland
 
 131
Adult Heart
 
 77.325
Adult VirginFemale Spermatheca
 
 94.6
Adult InseminatedFemale Spermatheca
 
 99.3
Adult Ovary
 
 280.3
Adult Testis
 
 71.9
Adult Male Accessory Gland
 
 263.5
Adult Carcass
 
 72.1
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0036104 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 416.05
Larval Midgut
 
 100.7
Larval Hindgut
 
 174.2
Larval Malpighian Tubules
 
 91.6
Larval Fat Body
 
 67.6
Larval Salivary Gland
 
 170.8
Larval Trachea
 
 133.625
Larval Carcass
 
 106.275
Adult Head
 
 160
Adult Eye
 
 194.425
Adult Brain
 
 310.2
Adult Thoracic-Abdominal Ganglion
 
 249.8
Adult Crop
 
 87.3
Adult Midgut
 
 139.9
Adult Hindgut
 
 154.4
Adult Malpighian Tubules
 
 89.1
Adult Fat Body
 
 104.1
Adult Salivary Gland
 
 131
Adult Heart
 
 77.325
Adult VirginFemale Spermatheca
 
 94.6
Adult InseminatedFemale Spermatheca
 
 99.3
Adult Ovary
 
 280.3
Adult Testis
 
 71.9
Adult Male Accessory Gland
 
 263.5
Adult Carcass
 
 72.1
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 416.05
Larval Midgut
 
 100.7
Larval Hindgut
 
 174.2
Larval Malpighian Tubules
 
 91.6
Larval Fat Body
 
 67.6
Larval Salivary Gland
 
 170.8
Larval Trachea
 
 133.625
Larval Carcass
 
 106.275
Adult Head
 
 160
Adult Eye
 
 194.425
Adult Brain
 
 310.2
Adult Thoracic-Abdominal Ganglion
 
 249.8
Adult Crop
 
 87.3
Adult Midgut
 
 139.9
Adult Hindgut
 
 154.4
Adult Malpighian Tubules
 
 89.1
Adult Fat Body
 
 104.1
Adult Salivary Gland
 
 131
Adult Heart
 
 77.325
Adult VirginFemale Spermatheca
 
 94.6
Adult InseminatedFemale Spermatheca
 
 99.3
Adult Ovary
 
 280.3
Adult Testis
 
 71.9
Adult Male Accessory Gland
 
 263.5
Adult Carcass
 
 72.1
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 416.05
Larval Midgut
 
 100.7
Larval Hindgut
 
 174.2
Larval Malpighian Tubules
 
 91.6
Larval Fat Body
 
 67.6
Larval Salivary Gland
 
 170.8
Larval Trachea
 
 133.625
Larval Carcass
 
 106.275
Adult Head
 
 160
Adult Eye
 
 194.425
Adult Brain
 
 310.2
Adult Thoracic-Abdominal Ganglion
 
 249.8
Adult Crop
 
 87.3
Adult Midgut
 
 139.9
Adult Hindgut
 
 154.4
Adult Malpighian Tubules
 
 89.1
Adult Fat Body
 
 104.1
Adult Salivary Gland
 
 131
Adult Heart
 
 77.325
Adult VirginFemale Spermatheca
 
 94.6
Adult InseminatedFemale Spermatheca
 
 99.3
Adult Ovary
 
 280.3
Adult Testis
 
 71.9
Adult Male Accessory Gland
 
 263.5
Adult Carcass
 
 72.1
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 416.05
Larval Midgut
 
 100.7
Larval Hindgut
 
 174.2
Larval Malpighian Tubules
 
 91.6
Larval Fat Body
 
 67.6
Larval Salivary Gland
 
 170.8
Larval Trachea
 
 133.625
Larval Carcass
 
 106.275
Adult Head
 
 160
Adult Eye
 
 194.425
Adult Brain
 
 310.2
Adult Thoracic-Abdominal Ganglion
 
 249.8
Adult Crop
 
 87.3
Adult Midgut
 
 139.9
Adult Hindgut
 
 154.4
Adult Malpighian Tubules
 
 89.1
Adult Fat Body
 
 104.1
Adult Salivary Gland
 
 131
Adult Heart
 
 77.325
Adult VirginFemale Spermatheca
 
 94.6
Adult InseminatedFemale Spermatheca
 
 99.3
Adult Ovary
 
 280.3
Adult Testis
 
 71.9
Adult Male Accessory Gland
 
 263.5
Adult Carcass
 
 72.1
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 160
 
NA 
Eye
 
 194.425
 
NA 
Brain
 
 310.2
 
416.05 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 249.8
 
NA 
Crop
 
 87.3
 
100.7 
Midgut
 
 139.9
 
174.2 
Hindgut
 
 154.4
 
91.6 
Malpighian Tubules
 
 89.1
 
67.6 
Fat Body
 
 104.1
 
170.8 
Salivary Gland
 
 131
 
NA 
Heart
 
 77.325
 
133.625 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 94.6
 
NA 
InseminatedFemale Spermatheca
 
 99.3
 
NA 
Ovary
 
 280.3
 
NA 
Testis
 
 71.9
 
NA 
Male Accessory Gland
 
 263.5
 
106.275 
Carcass
 
 72.1

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyExpress - Embryonic expression images (BDGP data)
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 2 )
For All Classical Alleles Show

Allele of CG6418ClassMutagenStocksKnown lesion
CG6418KG105641 --
CG6418MI01435
1 --
hide Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show

Allele of CG6418ClassMutagenStocksKnown lesion
CG6418GD119191 Yes
CG6418HMS004391 Yes
CG6418HMS004401 Yes
CG6418KK1006611 Yes
hide Aneuploid Aberrations
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
hide Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
hide Terms Based on Experimental Evidence ( 0 terms )
hide Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity with EMBL:AF083255
inferred from sequence or structural similarity
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
CG6418 allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 6 )
Bloomington
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 256 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
hide Other Information
hide Discoverer
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
hide Other Comments
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym
cg6418
Name Synonym
Secondary FlyBase IDs
hide References ( 19 )
Research paper
Altenhein et al., 2006, Dev. Biol. 296(2): 545--560
Expression profiling of glial genes during Drosophila embryogenesis. [FBrf0195367]
Gutierrez et al., 2003, Development 130(2): 343--354
The Drosophila trithorax group gene tonalli(tna) interacts genetically with the Brahma remodeling complex and encodes an SP-RING finger protein. [FBrf0155711]
Anantharaman et al., 2002, Nucleic Acids Res. 30(7): 1427--1464
Comparative genomics and evolution of proteins involved in RNA metabolism. [FBrf0159749]
Boudet et al., 2001, Genome Res. 11(12): 2101--2114
Evolution of intron/exon structure of DEAD helicase family genes in Arabidopsis, Caenorhabditis, and Drosophila. [FBrf0141559]
Lasko, 2000, J. Cell Biol. 150(2): F51--F56
The Drosophila melanogaster genome: translation factors and RNA binding proteins. [FBrf0129923]
Supplementary material
The modENCODE Consortium, 2010, Science 330(6012):
DataS14: Gene co-expression clusters. [FBrf0213979]
Mummery-Widmer et al., 2009, Nature 458(7241):
Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Giot et al., 2003, Science 302(5651):
Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase
Bellen, 2011.2.28, set926.xml
set926.xml [FBrf0213112]
Ni et al., 2010.12.1, A genome-scale shRNA resource for transgenic RNAi in Drosophila.
A genome-scale shRNA resource for transgenic RNAi in Drosophila. [FBrf0212437]
Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center
RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center
RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.
Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
FlyBase analysis
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation
FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.]
[Annotations performed at the Celera Jamboreee.] [FBrf0126705]
Curated genome annotation
Lasko, 1999.11, [Annotations performed at the Celera Jamboreee.]
[Annotations performed at the Celera Jamboreee.] [FBrf0126679]