FB2020_03, released Jun 16, 2020

Gene: Dmel\GlcAT-P

Open Close
General Information
Symbol
Dmel\GlcAT-P
Species
D. melanogaster
Name
Glucuronyltransferase P
Annotation Symbol
CG6207
Feature Type
protein_coding_gene
FlyBase ID
FBgn0036144
Gene Model Status
Current
Stock Availability
8 publicly available
Enzyme Name (EC)
Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase (2.4.1.135)
Glucuronosyltransferase (2.4.1.17)
Gene Snapshot
Contributions welcome
Other Summaries
Also Known As

dGlcAT-P

Key Links
Genomic Location
Cytogenetic map
68B1-68B1
Sequence location
3L:11,176,954..11,197,536 [-]
Recombination map

3-35

RefSeq locus
NT_037436 REGION:11176954..11197536
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Gene Ontology (GO) Annotations (14 terms)
Molecular Function (5 terms)
Terms Based on Experimental Evidence (5 terms)
CV Term
Evidence
References
asioloorosomucoid beta-1,3-glucuronosyltransferase activity
inferred from direct assay
(Kim et al., 2003)
galactosyl beta-1,3 N-acetylgalactosamine beta-1,3-glucuronosyltransferase activity
inferred from direct assay
(Kim et al., 2003)
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
inferred from direct assay
(Kim et al., 2003)
glucuronosyltransferase activity
inferred from direct assay
(Itoh et al., 2018)
N-acetyllactosamine beta-1,3-glucuronosyltransferase activity
inferred from direct assay
(Kim et al., 2003)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
inferred from biological aspect of ancestor with PANTHER:PTN000855563
(assigned by GO_Central )
(Gaudet et al., 2011)
Biological Process (7 terms)
Terms Based on Experimental Evidence (2 terms)
CV Term
Evidence
References
cellular glucuronidation
inferred from direct assay
(Itoh et al., 2018)
peripheral nervous system development
inferred from mutant phenotype
(Pandey et al., 2011)
Terms Based on Predictions or Assertions (5 terms)
CV Term
Evidence
References
carbohydrate metabolic process
inferred from biological aspect of ancestor with PANTHER:PTN000096174
(assigned by GO_Central )
(Gaudet et al., 2011)
chondroitin sulfate proteoglycan biosynthetic process
inferred from biological aspect of ancestor with PANTHER:PTN000855563
(assigned by GO_Central )
(Gaudet et al., 2011)
glycoprotein biosynthetic process
non-traceable author statement
(Kim et al., 2003)
glycosphingolipid biosynthetic process
non-traceable author statement
(Kim et al., 2003)
proteoglycan biosynthetic process
non-traceable author statement
(Kim et al., 2003)
Cellular Component (2 terms)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
Golgi apparatus
inferred from direct assay
(Pandey et al., 2011)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
Golgi membrane
inferred from biological aspect of ancestor with PANTHER:PTN000096174
(assigned by GO_Central )
(Gaudet et al., 2011)
Gene Group (FlyBase)
Protein Family (UniProt)
Belongs to the glycosyltransferase 43 family. (Q9VTG7)
Protein Signatures (InterPro)
Catalytic Activity (EC)
Experimental Evidence
UDP-alpha-D-glucuronate + [protein]-3-O-(beta-D-galactosyl-(1->3)-beta-D- galactosyl-(1->4)-beta-D-xylosyl)-L-serine = UDP + [protein]-3-O-(beta-D- GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl)-L-serine (2.4.1.135)
UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside (2.4.1.17)
Predictions / Assertions
UDP-alpha-D-glucuronate + [protein]-3-O-(beta-D-galactosyl-(1->3)-beta-D- galactosyl-(1->4)-beta-D-xylosyl)-L-serine = UDP + [protein]-3-O-(beta-D- GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl)-L-serine (2.4.1.135)
Summaries
Gene Group (FlyBase)
GLUCURONOSYLTRANSFERASES -
Glucuronosyltransferases catalyze the conjugation of glucuronic acid from UDP-glucuronate to an acceptor, typically a small lipophilic molecule. (Adapted from PMID:26453144.)
Protein Function (UniProtKB)
Involved in the biosynthesis of L2/HNK-1 carbohydrate epitope on both glycolipids and glycoproteins. Enzyme has a broad specificity.
(UniProt, Q9VTG7)
Gene Model and Products
Number of Transcripts
5
Number of Unique Polypeptides
2

Please see the GBrowse view of Dmel\GlcAT-P or the JBrowse view of Dmel\GlcAT-P for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Annotated transcripts do not represent all supported alternative splices within 5' UTR.

Gene model reviewed during 5.45

Sequence Ontology: Class of Gene
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
GlcAT-P-RA
FBtr0076189
NM_140191
3755
479
GlcAT-P-RB
FBtr0076190
NM_168451
3427
316
GlcAT-P-RC
FBtr0100422
NM_001014581
3266
316
GlcAT-P-RD
FBtr0306254
NM_001259784
3654
479
GlcAT-P-RE
FBtr0306255
NM_001259785
3161
316
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
GlcAT-P-PA
FBpp0075919
52.6
479
10.07
NP_648448
AAF50082
GlcAT-P-PB
FBpp0075920
35.8
316
9.53
NP_729685
AAN11882
GlcAT-P-PC
FBpp0099840
35.8
316
9.53
NP_001014581
AAX52748
GlcAT-P-PD
FBpp0297364
52.6
479
10.07
NP_001246713
AFH04384
GlcAT-P-PE
FBpp0297365
35.8
316
9.53
NP_001246714
AFH04385
Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

479 aa isoforms: GlcAT-P-PA, GlcAT-P-PD
316 aa isoforms: GlcAT-P-PB, GlcAT-P-PC, GlcAT-P-PE
Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\GlcAT-P using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage 1 -- 3
organism

Comment: maternally deposited

(Fisher et al., 2012)
embryonic stage 4 -- 6
anlage in statu nascendi
(Fisher et al., 2012)
trunk mesoderm anlage

Comment: anlage in statu nascendi

(Fisher et al., 2012)
embryonic stage 7 -- 8
head mesoderm
(Fisher et al., 2012)
trunk mesoderm
(Fisher et al., 2012)
ventral ectoderm
(Fisher et al., 2012)
embryonic stage 9 -- 10
head mesoderm
(Fisher et al., 2012)
posterior endoderm
(Fisher et al., 2012)
embryonic stage 11 -- 12
plasmatocyte primordium

Comment: reported as plasmatocytes anlage

(Fisher et al., 2012)
proventriculus primordium
(Fisher et al., 2012)
salivary gland body primordium
(Fisher et al., 2012)
salivary gland duct primordium
(Fisher et al., 2012)
ventral sensory complex anlage
(Fisher et al., 2012)
embryonic stage 13 -- 16
embryonic precursor of adult hindgut
(Fisher et al., 2012)
embryonic head epidermis
(Fisher et al., 2012)
embryonic proventriculus
(Fisher et al., 2012)
embryonic/larval garland cell
(Fisher et al., 2012)
embryonic/larval posterior spiracle
(Fisher et al., 2012)
embryonic/larval salivary gland
(Fisher et al., 2012)
embryonic/larval salivary gland body
(Fisher et al., 2012)
embryonic/larval salivary gland common duct
(Fisher et al., 2012)
midline ventral glial cell
(Fisher et al., 2012)
plasmatocyte
(Fisher et al., 2012)
RT-PCR
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage -- adult stage
(Kim et al., 2003)
organism

Comment: GlcAT-P isoforms RB, RC, and RE

(Itoh et al., 2018)
adult stage | female
adult thorax & adult abdomen
(Itoh et al., 2018)
third instar larval stage
embryonic/larval central nervous system
(Itoh et al., 2018)
Additional Descriptive Data

GlcAT-P isoforms RB, RC, and RE are detected throughout development and in various tissues (body wall, larval CNS, fat body) by qRT-PCR with the lowest levels in late embryonic stages and in larval fat body and the highest levels in adult female bodies.

(Itoh et al., 2018)

The three Glucuronyltransferase genes are expressed ubiquitously througout development. GlcAT-I is expressed at lower levels than GlcAT-S and GlcAT-P. However, transcripts for all 3 genes are detected in samples from 0-4 hr embryos through to the adult stage.

(Kim et al., 2003)
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
adult stage
adult head
(Aradska et al., 2015)
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
Golgi apparatus
inferred from direct assay
(Pandey et al., 2011)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\GlcAT-P in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyExpress - Embryonic expression images (BDGP data)
  • Stages(s) 4-6
  • Stages(s) 7-8
  • Stages(s) 9-10
  • Stages(s) 11-12
  • Stages(s) 13-16
FlyBase Wiki
Image Based Resources
Alleles, Insertions, and Transgenic Constructs
Classical and Insertion Alleles ( 14 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 9 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of GlcAT-P
Transgenic constructs containing regulatory region of GlcAT-P
Deletions and Duplications ( 1 )
Phenotypes
For more details about a specific phenotype click on the relevant allele symbol.
Lethality
Allele
lethal - all die before end of pupal stage
viable
Sterility
Allele
fertile
Other Phenotypes
Allele
increased cell number | embryonic stage 12
neuroanatomy defective | larval stage
neuroanatomy defective | larval stage (with Df(3L)BSC817)
size defective | larval stage (with Df(3L)BSC817)
some die during pupal stage
Phenotype manifest in
Allele
abdominal 3 ventral longitudinal muscle 3 (with Df(3L)BSC817)
abdominal 3 ventral longitudinal muscle 4 (with Df(3L)BSC817)
basement membrane | larval stage (with Df(3L)BSC817)
embryonic/larval neuromuscular junction | larval stage (with Df(3L)BSC817)
embryonic/larval peripheral nervous system
endosome | larval stage (with Df(3L)BSC817)
leg
macrophage | embryonic stage 12
NMJ bouton | larval stage (with Df(3L)BSC817)
peripheral glial cell | larval stage
postsynaptic density | larval stage (with Df(3L)BSC817)
synaptic vesicle | larval stage (with Df(3L)BSC817)
ventral nerve cord | larval stage
ventral nerve cord | larval stage (with Df(3L)BSC817)
ventral nerve cord | second instar larval stage
VUM neuron | larval stage
wing
wing vein | ectopic, with Scer\GAL4sd-SG29.1
yolk | embryonic stage 12, with Scer\GAL4srp.Hemo
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v8.0)
Homo sapiens (Human) (4)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\B3GAT1
4 of 15
Yes
No
1  
Hsap\B3GAT2
3 of 15
No
No
Hsap\B3GAT3
3 of 15
No
No
1  
Hsap\C9orf139
1 of 15
No
Yes
Model Organism Orthologs (via DIOPT v8.0)
Mus musculus (laboratory mouse) (3)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\B3gat1
4 of 15
Yes
No
Mmus\B3gat2
3 of 15
No
No
Mmus\B3gat3
3 of 15
No
No
Rattus norvegicus (Norway rat) (3)
Rnor\B3gat1
3 of 13
Yes
No
Rnor\B3gat3
3 of 13
Yes
No
Rnor\B3gat2
2 of 13
No
No
Xenopus tropicalis (Western clawed frog) (5)
Xtro\b3gat1
3 of 12
Yes
No
Xtro\b3gat2
3 of 12
Yes
No
Xtro\b3gat3
3 of 12
Yes
No
Xtro\b3gat1l
2 of 12
No
No
Xtro\LOC100493713
1 of 12
No
Yes
Danio rerio (Zebrafish) (4)
Drer\b3gat1a
4 of 15
Yes
No
Drer\b3gat1b
3 of 15
No
No
Drer\b3gat3
3 of 15
No
No
Drer\b3gat2
2 of 15
No
No
Caenorhabditis elegans (Nematode, roundworm) (7)
Cele\glct-2
7 of 15
Yes
Yes
Cele\glct-1
6 of 15
No
Yes
Cele\glct-4
5 of 15
No
Yes
Cele\glct-3
4 of 15
No
Yes
Cele\glct-5
4 of 15
No
Yes
Cele\glct-6
3 of 15
No
Yes
Cele\sqv-8
3 of 15
No
No
Arabidopsis thaliana (thale-cress) (4)
Atha\IRX9
6 of 9
Yes
Yes
Atha\IRX9-L
5 of 9
No
No
Atha\IRX14
2 of 9
No
Yes
Atha\IRX14-L
2 of 9
No
Yes
Saccharomyces cerevisiae (Brewer's yeast) (0)
No records found.
Schizosaccharomyces pombe (Fission yeast) (0)
No records found.
Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG091909L7 )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila simulans
Dsim\GD12815
Drosophila sechellia
Dsec\GM24766
Drosophila erecta
Dere\GG13931
Drosophila yakuba
Dyak\GlcAT-P
Drosophila ananassae
Dana\GF24562
Drosophila pseudoobscura pseudoobscura
Dpse\GA19440
Drosophila persimilis
Dper\GL22838
Drosophila willistoni
Dwil\GK20549
Drosophila virilis
Dvir\GJ11297
Drosophila mojavensis
Dmoj\GI11619
Drosophila grimshawi
Dgri\GH16660
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091506EE )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17006509
Glossina morsitans
Tsetse fly
Gmor\GMOY007403
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_10389
Mayetiola destructor
Hessian fly
Mdes\Mdes001780
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL006254
Anopheles darlingi
American malaria mosquito
Adar\ADAC001528
Anopheles gambiae
Malaria mosquito
Agam\AGAP001367
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ007101
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W06GF )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA012266
Danaus plexippus
Monarch butterfly
Dple\DPOGS203028-PA
Heliconius melpomene
Postman butterfly
Hmel\HMEL011050
Apis florea
Little honeybee
Aflo\2194914276
Apis mellifera
Western honey bee
Amel\GB45220
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP22852
Bombus terrestris
Buff-tailed bumblebee
Bter\15210456
Linepithema humile
Argentine ant
Lhum\LH14294
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:002d5e
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_09263
Tribolium castaneum
Red flour beetle
Tcas\TC004674
Pediculus humanus
Human body louse
Phum\PHUM032300
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI000123
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI085956
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI002630
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_09763
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_06401
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X0AB0 )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strigamia maritima
European centipede
Smar\SMAR014995
Ixodes scapularis
Black-legged tick
Isca\ISCW019389
Tetranychus urticae
Two-spotted spider mite
Turt\tetur01g08930
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_49588
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_259592
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_49254
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G0G8P )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-B3gat3
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-B3gat1
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-B3gat1_2
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-B3gat1_1
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000012206
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000019567
Ciona intestinalis
Vase tunicate
Cint\uglcat1
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000007033
Ciona intestinalis
Vase tunicate
Cint\LOC100175613
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000018992
Ciona intestinalis
Vase tunicate
Cint\uglcat2
Ciona intestinalis
Vase tunicate
Cint\uglcat2l
Gallus gallus
Domestic chicken
Ggal\B3GAT2
Gallus gallus
Domestic chicken
Ggal\LOC408180
Gallus gallus
Domestic chicken
Ggal\B3GAT1
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v8.0)
Drosophila melanogaster (Fruit fly) (2)
Gene Symbol
Score
Source
Compara
eggNOG
Homologene
Inparanoid
Isobase
OrthoDB
OrthoFinder
orthoMCL
Panther
RoundUp
Alignment
GlcAT-I
3 of 10
GlcAT-S
2 of 10
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Model Summary Ribbon
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 0 )
    Human Ortholog
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    B3GAT1; beta-1,3-glucuronyltransferase 1
    4 of 15
    151290
         
        B3GAT2; beta-1,3-glucuronyltransferase 2
        3 of 15
        607497
            B3GAT3; beta-1,3-glucuronyltransferase 3
            3 of 15
            606374
             
            Functional Complementation Data
            Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
            Interactions
            Summary of Physical Interactions
            esyN Network Diagram
            Interactions Browser
            Summary of Genetic Interactions
            esyN Network Diagram
            esyN Network Key:
            Suppression
            Enhancement
            View in Interactions Browser
            Please look at the allele data for full details of the genetic interactions
            Starting gene(s)
            Interaction type
            Interacting gene(s)
            Reference
            GlcAT-P
            enhanceable
            repo
            (Pandey et al., 2011)
            GlcAT-P
            suppressible
            Tb
            (Pandey et al., 2011)
            Starting gene(s)
            Interaction type
            Interacting gene(s)
            Reference
            External Data
            Linkouts
            BioGRID - A database of protein and genetic interactions.
            DroID - A comprehensive database of gene and protein interactions.
            InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
            Pathways
            Signaling Pathways (FlyBase)
            Metabolic Pathways
            External Data
            Linkouts
            Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
            Genomic Location and Detailed Mapping Data
            Chromosome (arm)
            3L
            Recombination map

            3-35

            Cytogenetic map
            68B1-68B1
            Sequence location
            3L:11,176,954..11,197,536 [-]
            FlyBase Computed Cytological Location
            Cytogenetic map
            Evidence for location
            68B1-68B1
            Limits computationally determined from genome sequence between P{PZ}l(3)0123901239&P{lacW}l(3)01239j9B4 and P{PZ}CycA02461&P{PZ}CycA03946
            Experimentally Determined Cytological Location
            Cytogenetic map
            Notes
            References
            Experimentally Determined Recombination Data
            Location

            3-35

            (FlyBase, 2016)

            3-28.7

            (Comeron et al., 2012)
            Left of (cM)
            Right of (cM)
            Notes
            Stocks and Reagents
            Stocks (8)
            Genomic Clones (30)
            cDNA Clones (60)
             

            Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

            cDNA clones, fully sequenced
            BDGP DGC clones
            Other clones
            Drosophila Genomics Resource Center cDNA clones

            For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

            cDNA Clones, End Sequenced (ESTs)
            BDGP DGC clones
            Other clones
            RNAi and Array Information
            Linkouts
            DRSC - Results frm RNAi screens
            GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
            Antibody Information
            Laboratory Generated Antibodies
             

            polyclonal

            (Itoh et al., 2018, Pandey et al., 2011)
            Commercially Available Antibodies
             
            Other Information
            Relationship to Other Genes
            Source for database identify of

            Source for identity of: GlcAT-P CG6207

            (FlyBase, 1996-)
            Source for database merge of
            Additional comments

            Source for identity of GlcAT-P CG6207 was sequence comparison ( date:030311 ).

            (FlyBase, 1996-)
            Other Comments

            GlcAT-P is required in hemocytes for aspects of glial cell biology which in turn affect the elongation of peripheral nerves during larval development.

            (Pandey et al., 2011)
            Origin and Etymology
            Discoverer
            Etymology
            Identification
            External Crossreferences and Linkouts ( 56 )
            Sequence Crossreferences
            NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
            GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
            GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
            RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
            UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
            UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
            Other crossreferences
            BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
            Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
            Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
            Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
            Flygut - An atlas of the Drosophila adult midgut
            GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
            iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
            InterPro - A database of protein families, domains and functional sites
            KEGG Genes - Molecular building blocks of life in the genomic space.
            modMine - A data warehouse for the modENCODE project
            Linkouts
            BioGRID - A database of protein and genetic interactions.
            DroID - A comprehensive database of gene and protein interactions.
            DRSC - Results frm RNAi screens
            FLIGHT - Cell culture data for RNAi and other high-throughput technologies
            FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
            FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
            FlyMine - An integrated database for Drosophila genomics
            InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
            Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
            Synonyms and Secondary IDs (7)
            Datasets (0)
            Study focus (0)
            Experimental Role
            Project
            Project Type
            Title
            References (43)