A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\Bmcp

General Information
SymbolDmel\BmcpSpeciesD. melanogaster
NameBmcpAnnotation symbolCG7314
Feature typeprotein_coding_geneFlyBase IDFBgn0036199
Gene Model StatusCurrent Stock availability 1 publicly available
Also Known AsdmUCP5
Genomic Location
Chromosome (arm)3LRecombination map
Cytogenetic map68D3-68D3Sequence location3L:11,714,020..11,721,218 [+]

Genomic Maps

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modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene Bmcp is referred to in FlyBase by the symbol Dmel\Bmcp (CG7314, FBgn0036199). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: transmembrane transporter activity. There is experimental evidence that it is involved in the biological process: regulation of metabolic process. 4 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Mitochondrial carrier domain; Mitochondrial carrier protein; Mitochondrial substrate/solute carrier. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult female reproductive system. Gene sequence location is 3L:11714020..11721218.

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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2012_01
Sequence features
FB2011_10
Controlled Vocabulary Terms
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
68D3-68D3  
Limits computationally determined from genome sequence between P{PZ}l(3)0123901239&P{lacW}l(3)01239j9B4 and P{PZ}CycA02461&P{PZ}CycA03946  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\Bmcp for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0076115 FBtr0076114 FBtr0076116 FBpp0075845 FBpp0075846 FBpp0075847 FBti0017723 FBti0021820
Comments on Gene Model
Transposon inserted in 3' UTR
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0076114
  1632
  303
FBtr0076115
  1701
  303
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0075845  
33.5  
303  
9.93  
FBpp0075846  
33.5  
303  
9.93  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins
  • MTDROME07314
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view Bmcp-RB Bmcp-RA CG32088-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0036199


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0036199
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0036199 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 358
embryo 02-04hr
 
 352
embryo 04-06hr
 
 429
embryo 06-08hr
 
 566
embryo 08-10hr
 
 743
embryo 10-12hr
 
 814
embryo 12-14hr
 
 712
embryo 14-16hr
 
 558
embryo 16-18hr
 
 480
embryo 18-20hr
 
 451
embryo 20-22hr
 
 551
embryo 22-24hr
 
 625
larva L1
 
 905
larva L2
 
 739
larva L3 12hr old
 
 487
larva L3 puffstage 1-2
 
 383
larva L3 puffstage 3-6
 
 476
larva L3 puffstage 7-9
 
 559
white prepupae new
 
 655
white prepupae 12hr
 
 541
white prepupae 24hr
 
 597
pupae 2d postWPP
 
 564
pupae 3d postWPP
 
 477
pupae 4d postWPP
 
 274
adult male 01day
 
 618
adult male 05day
 
 714
adult male 30day
 
 634
adult female 01day
 
 438
adult female 05day
 
 397
adult female 30day
 
 443
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (358)
embryo 02-04hr
 (352)
embryo 04-06hr
 (429)
embryo 06-08hr
 (566)
embryo 08-10hr
 (743)
embryo 10-12hr
 (814)
embryo 12-14hr
 (712)
embryo 14-16hr
 (558)
embryo 16-18hr
 (480)
embryo 18-20hr
 (451)
embryo 20-22hr
 (551)
embryo 22-24hr
 (625)
larva L1
 (905)
larva L2
 (739)
larva L3 12hr old
 (487)
larva L3 puffstage 1-2
 (383)
larva L3 puffstage 3-6
 (476)
larva L3 puffstage 7-9
 (559)
white prepupae new
 (655)
white prepupae 12hr
 (541)
white prepupae 24hr
 (597)
pupae 2d postWPP
 (564)
pupae 3d postWPP
 (477)
pupae 4d postWPP
 (274)
adult male 01day
 (618)
adult male 05day
 (714)
adult male 30day
 (634)
adult female 01day
 (438)
adult female 05day
 (397)
adult female 30day
 (443)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 358
embryo 02-04hr
 
 352
embryo 04-06hr
 
 429
embryo 06-08hr
 
 566
embryo 08-10hr
 
 743
embryo 10-12hr
 
 814
embryo 12-14hr
 
 712
embryo 14-16hr
 
 558
embryo 16-18hr
 
 480
embryo 18-20hr
 
 451
embryo 20-22hr
 
 551
embryo 22-24hr
 
 625
larva L1
 
 905
larva L2
 
 739
larva L3 12hr old
 
 487
larva L3 puffstage 1-2
 
 383
larva L3 puffstage 3-6
 
 476
larva L3 puffstage 7-9
 
 559
white prepupae new
 
 655
white prepupae 12hr
 
 541
white prepupae 24hr
 
 597
pupae 2d postWPP
 
 564
pupae 3d postWPP
 
 477
pupae 4d postWPP
 
 274
adult male 01day
 
 618
adult male 05day
 
 714
adult male 30day
 
 634
adult female 01day
 
 438
adult female 05day
 
 397
adult female 30day
 
 443
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 358
embryo 02-04hr
 
 352
embryo 04-06hr
 
 429
embryo 06-08hr
 
 566
embryo 08-10hr
 
 743
embryo 10-12hr
 
 814
embryo 12-14hr
 
 712
embryo 14-16hr
 
 558
embryo 16-18hr
 
 480
embryo 18-20hr
 
 451
embryo 20-22hr
 
 551
embryo 22-24hr
 
 625
larva L1
 
 905
larva L2
 
 739
larva L3 12hr old
 
 487
larva L3 puffstage 1-2
 
 383
larva L3 puffstage 3-6
 
 476
larva L3 puffstage 7-9
 
 559
white prepupae new
 
 655
white prepupae 12hr
 
 541
white prepupae 24hr
 
 597
pupae 2d postWPP
 
 564
pupae 3d postWPP
 
 477
pupae 4d postWPP
 
 274
adult male 01day
 
 618
adult male 05day
 
 714
adult male 30day
 
 634
adult female 01day
 
 438
adult female 05day
 
 397
adult female 30day
 
 443
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 358
embryo 02-04hr
 
 352
embryo 04-06hr
 
 429
embryo 06-08hr
 
 566
embryo 08-10hr
 
 743
embryo 10-12hr
 
 814
embryo 12-14hr
 
 712
embryo 14-16hr
 
 558
embryo 16-18hr
 
 480
embryo 18-20hr
 
 451
embryo 20-22hr
 
 551
embryo 22-24hr
 
 625
larva L1
 
 905
larva L2
 
 739
larva L3 12hr old
 
 487
larva L3 puffstage 1-2
 
 383
larva L3 puffstage 3-6
 
 476
larva L3 puffstage 7-9
 
 559
white prepupae new
 
 655
white prepupae 12hr
 
 541
white prepupae 24hr
 
 597
pupae 2d postWPP
 
 564
pupae 3d postWPP
 
 477
pupae 4d postWPP
 
 274
adult male 01day
 
 618
adult male 05day
 
 714
adult male 30day
 
 634
adult female 01day
 
 438
adult female 05day
 
 397
adult female 30day
 
 443
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0036199 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 358
embryo 02-04hr
 
 352
embryo 04-06hr
 
 429
embryo 06-08hr
 
 566
embryo 08-10hr
 
 743
embryo 10-12hr
 
 814
embryo 12-14hr
 
 712
embryo 14-16hr
 
 558
embryo 16-18hr
 
 480
embryo 18-20hr
 
 451
embryo 20-22hr
 
 551
embryo 22-24hr
 
 625
larva L1
 
 905
larva L2
 
 739
larva L3 12hr old
 
 487
larva L3 puffstage 1-2
 
 383
larva L3 puffstage 3-6
 
 476
larva L3 puffstage 7-9
 
 559
white prepupae new
 
 655
white prepupae 12hr
 
 541
white prepupae 24hr
 
 597
pupae 2d postWPP
 
 564
pupae 3d postWPP
 
 477
pupae 4d postWPP
 
 274
adult male 01day
 
 618
adult male 05day
 
 714
adult male 30day
 
 634
adult female 01day
 
 438
adult female 05day
 
 397
adult female 30day
 
 443
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (358)
embryo 02-04hr
 (352)
embryo 04-06hr
 (429)
embryo 06-08hr
 (566)
embryo 08-10hr
 (743)
embryo 10-12hr
 (814)
embryo 12-14hr
 (712)
embryo 14-16hr
 (558)
embryo 16-18hr
 (480)
embryo 18-20hr
 (451)
embryo 20-22hr
 (551)
embryo 22-24hr
 (625)
larva L1
 (905)
larva L2
 (739)
larva L3 12hr old
 (487)
larva L3 puffstage 1-2
 (383)
larva L3 puffstage 3-6
 (476)
larva L3 puffstage 7-9
 (559)
white prepupae new
 (655)
white prepupae 12hr
 (541)
white prepupae 24hr
 (597)
pupae 2d postWPP
 (564)
pupae 3d postWPP
 (477)
pupae 4d postWPP
 (274)
adult male 01day
 (618)
adult male 05day
 (714)
adult male 30day
 (634)
adult female 01day
 (438)
adult female 05day
 (397)
adult female 30day
 (443)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 358
embryo 02-04hr
 
 352
embryo 04-06hr
 
 429
embryo 06-08hr
 
 566
embryo 08-10hr
 
 743
embryo 10-12hr
 
 814
embryo 12-14hr
 
 712
embryo 14-16hr
 
 558
embryo 16-18hr
 
 480
embryo 18-20hr
 
 451
embryo 20-22hr
 
 551
embryo 22-24hr
 
 625
larva L1
 
 905
larva L2
 
 739
larva L3 12hr old
 
 487
larva L3 puffstage 1-2
 
 383
larva L3 puffstage 3-6
 
 476
larva L3 puffstage 7-9
 
 559
white prepupae new
 
 655
white prepupae 12hr
 
 541
white prepupae 24hr
 
 597
pupae 2d postWPP
 
 564
pupae 3d postWPP
 
 477
pupae 4d postWPP
 
 274
adult male 01day
 
 618
adult male 05day
 
 714
adult male 30day
 
 634
adult female 01day
 
 438
adult female 05day
 
 397
adult female 30day
 
 443
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 358
embryo 02-04hr
 
 352
embryo 04-06hr
 
 429
embryo 06-08hr
 
 566
embryo 08-10hr
 
 743
embryo 10-12hr
 
 814
embryo 12-14hr
 
 712
embryo 14-16hr
 
 558
embryo 16-18hr
 
 480
embryo 18-20hr
 
 451
embryo 20-22hr
 
 551
embryo 22-24hr
 
 625
larva L1
 
 905
larva L2
 
 739
larva L3 12hr old
 
 487
larva L3 puffstage 1-2
 
 383
larva L3 puffstage 3-6
 
 476
larva L3 puffstage 7-9
 
 559
white prepupae new
 
 655
white prepupae 12hr
 
 541
white prepupae 24hr
 
 597
pupae 2d postWPP
 
 564
pupae 3d postWPP
 
 477
pupae 4d postWPP
 
 274
adult male 01day
 
 618
adult male 05day
 
 714
adult male 30day
 
 634
adult female 01day
 
 438
adult female 05day
 
 397
adult female 30day
 
 443
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 358
embryo 02-04hr
 
 352
embryo 04-06hr
 
 429
embryo 06-08hr
 
 566
embryo 08-10hr
 
 743
embryo 10-12hr
 
 814
embryo 12-14hr
 
 712
embryo 14-16hr
 
 558
embryo 16-18hr
 
 480
embryo 18-20hr
 
 451
embryo 20-22hr
 
 551
embryo 22-24hr
 
 625
larva L1
 
 905
larva L2
 
 739
larva L3 12hr old
 
 487
larva L3 puffstage 1-2
 
 383
larva L3 puffstage 3-6
 
 476
larva L3 puffstage 7-9
 
 559
white prepupae new
 
 655
white prepupae 12hr
 
 541
white prepupae 24hr
 
 597
pupae 2d postWPP
 
 564
pupae 3d postWPP
 
 477
pupae 4d postWPP
 
 274
adult male 01day
 
 618
adult male 05day
 
 714
adult male 30day
 
 634
adult female 01day
 
 438
adult female 05day
 
 397
adult female 30day
 
 443
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0036199


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0036199
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult female reproductive system.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Heatmap
Tissue   Expression Level
Larval Central Nervous System no informative data
Larval Midgut no informative data
Larval Hindgut no informative data
Larval Malpighian Tubules no informative data
Larval Fat Body no informative data
Larval Salivary Gland no informative data
Larval Trachea no informative data
Larval Carcass no informative data
Adult Head no informative data
Adult Eye no informative data
Adult Brain no informative data
Adult Thoracic-Abdominal Ganglion no informative data
Adult Crop no informative data
Adult Midgut no informative data
Adult Hindgut no informative data
Adult Malpighian Tubules no informative data
Adult Fat Body no informative data
Adult Salivary Gland no informative data
Adult Heart no informative data
Adult VirginFemale Spermatheca no informative data
Adult InseminatedFemale Spermatheca no informative data
Adult Ovary no informative data
Adult Testis no informative data
Adult Male Accessory Gland no informative data
Adult Carcass no informative data

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 1 )
For All Classical Alleles Show

Allele of BmcpClassMutagenStocksKnown lesion
BmcpBG024461 Yes
hide Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show

Allele of BmcpClassMutagenStocksKnown lesion
BmcpGD15690 Yes
BmcpScer\UAS.cBa0 Yes
BmcpScer\UAS.T:Zzzz\FLAG0 Yes
hide Aneuploid Aberrations
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
miscellaneous insertions
hide Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
hide Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term
References
Cellular Component ( 0 terms)
hide Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term
References
inferred from electronic annotation with InterPro:IPR002067
inferred from sequence or structural similarity
inferred from sequence or structural similarity with UniProtKB:O95258
Biological Process
CV term
References
Cellular Component
CV term
References
inferred from sequence or structural similarity
inferred from sequence or structural similarity with UniProtKB:O95258
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
Bmcp allele
Gene
References
hide External Data
Linkouts
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 1 )
Bloomington
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 56 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
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Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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Source for database identity of
Source for identity of: Bmcp CG7314
Source for database merge of
Additional comments
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Bmcp is important to maintain metabolic homeostasis.
Bmcp mutants are highly sensitive to starvation stress.
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Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins
  • MTDROME07314
Linkouts
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 7 )
Reported As
Symbol Synonym
Name Synonym
Secondary FlyBase IDs
hide References ( 20 )
Research paper
Besson et al., 2010, Hum. Mol. Genet. 19(17): 3372--3382
Increased energy metabolism rescues glia-induced pathology in a Drosophila model of Huntington's disease. [FBrf0211472]
Fernández-Ayala et al., 2010, PLoS ONE 5(1): e8549
Gene expression in a Drosophila model of mitochondrial disease. [FBrf0209705]
Deloger et al., 2009, Gene 439(1-2): 55--62
Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster. [FBrf0207990]
Sanchez-Blanco et al., 2006, Genetics 172(3): 1699--1710
Involvement of Drosophila uncoupling protein 5 in metabolism and aging. [FBrf0190770]
Lipatov et al., 2005, BMC Biol. 3: 24
Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome. [FBrf0189752]
Sokolova, 2005, FEBS Lett. 579(2): 313--317
Evolution of mitochondrial uncoupling proteins: novel invertebrate UCP homologues suggest early evolutionary divergence of the UCP family. [FBrf0188468]
Hanak and Jezek, 2001, FEBS Lett. 495(3): 137--141
Mitochondrial uncoupling proteins and phylogenesis - UCP4 as the ancestral uncoupling protein. [FBrf0135768]
Supplementary material
Cammarato et al., 2011, PLoS ONE 6(4):
Table S1. Proteins & Peptides. [FBrf0214682]
The modENCODE Consortium, 2010, Science 330(6012):
DataS14: Gene co-expression clusters. [FBrf0213979]
Dietzl et al., 2007, Nature 448(7150):
Supplementary Table 1. [FBrf0202579]
Personal communication to FlyBase
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.
Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
Sardiello et al., 2003.6.11, MitoDrome: A database of Drosophila melanogaster nuclear genes encoding proteins targeted to the mitochondrion.
MitoDrome: A database of Drosophila melanogaster nuclear genes encoding proteins targeted to the mitochondrion. [FBrf0159903]
Nelson, 2000.4.10, Mitochondrial carrier genes.
Mitochondrial carrier genes. [FBrf0126915]
Abstract
Sanchez-Blanco et al., 2004, A. Dros. Res. Conf. 45: 263B
The Newly Characterized Drosophila Uncoupling Protein 5 and its Involvement in Aging. [FBrf0173771]
FlyBase analysis
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation
FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.]
[Annotations performed at the Celera Jamboreee.] [FBrf0126705]
Curated genome annotation
Ketchum, 1999.11, [Annotations performed at the Celera Jamboreee.]
[Annotations performed at the Celera Jamboreee.] [FBrf0126677]