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Gene Dmel\CG11560

General Information
Symbol	Dmel\CG11560	Species	D. melanogaster
Name		Annotation symbol	CG11560
Feature type	protein_coding_gene	FlyBase ID	FBgn0036249
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	68F4-68F4	Sequence location	3L:12,113,163..12,114,288 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG11560 (FBgn0036249). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: DNA binding. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Zinc finger, BED-type predicted. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult ovary, adult male accessory gland. Comments on Affy2 ProbeSet: ProbeSet 1634410_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG11560. Gene sequence location is 3L:12113163..12114288.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01	Sequence features BKN25181 HFA09843
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 68F4-68F4   Limits computationally determined from genome sequence between P{PZ}rols08232&P{lacW}l(3)j2D3j2D3 and P{PZ}l(3)0508805088
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG11560 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG11560-RA FBtr0075993  NM_140290   1060   303
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG11560-PA   FBpp0075725   34.8   303   5.09     NP_648547   AAF49962
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, BED-type predicted (IPR003656)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014296 AAF49962   AI258735   AI511727   AW943650   AY069658 AAL39803   BI629409   BT050548   CO189152   CO307929   EC057879   EC238127   EV584236   EV593566   EV595073
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8T004 Q9VTT4
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0036249    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0036249 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0036249 expression level Developmental Stage   Expression Level embryo 00-02hr    1910 embryo 02-04hr    1976 embryo 04-06hr    1689 embryo 06-08hr    1824 embryo 08-10hr    1552 embryo 10-12hr    1087 embryo 12-14hr    821 embryo 14-16hr    702 embryo 16-18hr    543 embryo 18-20hr    381 embryo 20-22hr    344 embryo 22-24hr    429 larva L1    357 larva L2    290 larva L3 12hr old    286 larva L3 puffstage 1-2    402 larva L3 puffstage 3-6    554 larva L3 puffstage 7-9    581 white prepupae new    581 white prepupae 12hr    630 white prepupae 24hr    785 pupae 2d postWPP    538 pupae 3d postWPP    273 pupae 4d postWPP    209 adult male 01day    288 adult male 05day    378 adult male 30day    361 adult female 01day    526 adult female 05day    691 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1910) embryo 02-04hr  (1976) embryo 04-06hr  (1689) embryo 06-08hr  (1824) embryo 08-10hr  (1552) embryo 10-12hr  (1087) embryo 12-14hr  (821) embryo 14-16hr  (702) embryo 16-18hr  (543) embryo 18-20hr  (381) embryo 20-22hr  (344) embryo 22-24hr  (429) larva L1  (357) larva L2  (290) larva L3 12hr old  (286) larva L3 puffstage 1-2  (402) larva L3 puffstage 3-6  (554) larva L3 puffstage 7-9  (581) white prepupae new  (581) white prepupae 12hr  (630) white prepupae 24hr  (785) pupae 2d postWPP  (538) pupae 3d postWPP  (273) pupae 4d postWPP  (209) adult male 01day  (288) adult male 05day  (378) adult male 30day  (361) adult female 01day  (526) adult female 05day  (691) adult female 30day  (767) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1910) embryo 02-04hr  (1976) embryo 04-06hr  (1689) embryo 06-08hr  (1824) embryo 08-10hr  (1552) embryo 10-12hr    1087 embryo 12-14hr    821 embryo 14-16hr    702 embryo 16-18hr    543 embryo 18-20hr    381 embryo 20-22hr    344 embryo 22-24hr    429 larva L1    357 larva L2    290 larva L3 12hr old    286 larva L3 puffstage 1-2    402 larva L3 puffstage 3-6    554 larva L3 puffstage 7-9    581 white prepupae new    581 white prepupae 12hr    630 white prepupae 24hr    785 pupae 2d postWPP    538 pupae 3d postWPP    273 pupae 4d postWPP    209 adult male 01day    288 adult male 05day    378 adult male 30day    361 adult female 01day    526 adult female 05day    691 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1910 embryo 02-04hr    1976 embryo 04-06hr    1689 embryo 06-08hr    1824 embryo 08-10hr    1552 embryo 10-12hr    1087 embryo 12-14hr    821 embryo 14-16hr    702 embryo 16-18hr    543 embryo 18-20hr    381 embryo 20-22hr    344 embryo 22-24hr    429 larva L1    357 larva L2    290 larva L3 12hr old    286 larva L3 puffstage 1-2    402 larva L3 puffstage 3-6    554 larva L3 puffstage 7-9    581 white prepupae new    581 white prepupae 12hr    630 white prepupae 24hr    785 pupae 2d postWPP    538 pupae 3d postWPP    273 pupae 4d postWPP    209 adult male 01day    288 adult male 05day    378 adult male 30day    361 adult female 01day    526 adult female 05day    691 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1910 embryo 02-04hr    1976 embryo 04-06hr    1689 embryo 06-08hr    1824 embryo 08-10hr    1552 embryo 10-12hr    1087 embryo 12-14hr    821 embryo 14-16hr    702 embryo 16-18hr    543 embryo 18-20hr    381 embryo 20-22hr    344 embryo 22-24hr    429 larva L1    357 larva L2    290 larva L3 12hr old    286 larva L3 puffstage 1-2    402 larva L3 puffstage 3-6    554 larva L3 puffstage 7-9    581 white prepupae new    581 white prepupae 12hr    630 white prepupae 24hr    785 pupae 2d postWPP    538 pupae 3d postWPP    273 pupae 4d postWPP    209 adult male 01day    288 adult male 05day    378 adult male 30day    361 adult female 01day    526 adult female 05day    691 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0036249 expression level Developmental Stage   Expression Level embryo 00-02hr    1910 embryo 02-04hr    1976 embryo 04-06hr    1689 embryo 06-08hr    1824 embryo 08-10hr    1552 embryo 10-12hr    1087 embryo 12-14hr    821 embryo 14-16hr    702 embryo 16-18hr    543 embryo 18-20hr    381 embryo 20-22hr    344 embryo 22-24hr    429 larva L1    357 larva L2    290 larva L3 12hr old    286 larva L3 puffstage 1-2    402 larva L3 puffstage 3-6    554 larva L3 puffstage 7-9    581 white prepupae new    581 white prepupae 12hr    630 white prepupae 24hr    785 pupae 2d postWPP    538 pupae 3d postWPP    273 pupae 4d postWPP    209 adult male 01day    288 adult male 05day    378 adult male 30day    361 adult female 01day    526 adult female 05day    691 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1910) embryo 02-04hr  (1976) embryo 04-06hr  (1689) embryo 06-08hr  (1824) embryo 08-10hr  (1552) embryo 10-12hr  (1087) embryo 12-14hr  (821) embryo 14-16hr  (702) embryo 16-18hr  (543) embryo 18-20hr  (381) embryo 20-22hr  (344) embryo 22-24hr  (429) larva L1  (357) larva L2  (290) larva L3 12hr old  (286) larva L3 puffstage 1-2  (402) larva L3 puffstage 3-6  (554) larva L3 puffstage 7-9  (581) white prepupae new  (581) white prepupae 12hr  (630) white prepupae 24hr  (785) pupae 2d postWPP  (538) pupae 3d postWPP  (273) pupae 4d postWPP  (209) adult male 01day  (288) adult male 05day  (378) adult male 30day  (361) adult female 01day  (526) adult female 05day  (691) adult female 30day  (767) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  1910 embryo 02-04hr  1976 embryo 04-06hr  1689 embryo 06-08hr  1824 embryo 08-10hr  1552 embryo 10-12hr    1087 embryo 12-14hr    821 embryo 14-16hr    702 embryo 16-18hr    543 embryo 18-20hr    381 embryo 20-22hr    344 embryo 22-24hr    429 larva L1    357 larva L2    290 larva L3 12hr old    286 larva L3 puffstage 1-2    402 larva L3 puffstage 3-6    554 larva L3 puffstage 7-9    581 white prepupae new    581 white prepupae 12hr    630 white prepupae 24hr    785 pupae 2d postWPP    538 pupae 3d postWPP    273 pupae 4d postWPP    209 adult male 01day    288 adult male 05day    378 adult male 30day    361 adult female 01day    526 adult female 05day    691 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1910 embryo 02-04hr    1976 embryo 04-06hr    1689 embryo 06-08hr    1824 embryo 08-10hr    1552 embryo 10-12hr    1087 embryo 12-14hr    821 embryo 14-16hr    702 embryo 16-18hr    543 embryo 18-20hr    381 embryo 20-22hr    344 embryo 22-24hr    429 larva L1    357 larva L2    290 larva L3 12hr old    286 larva L3 puffstage 1-2    402 larva L3 puffstage 3-6    554 larva L3 puffstage 7-9    581 white prepupae new    581 white prepupae 12hr    630 white prepupae 24hr    785 pupae 2d postWPP    538 pupae 3d postWPP    273 pupae 4d postWPP    209 adult male 01day    288 adult male 05day    378 adult male 30day    361 adult female 01day    526 adult female 05day    691 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1910 embryo 02-04hr    1976 embryo 04-06hr    1689 embryo 06-08hr    1824 embryo 08-10hr    1552 embryo 10-12hr    1087 embryo 12-14hr    821 embryo 14-16hr    702 embryo 16-18hr    543 embryo 18-20hr    381 embryo 20-22hr    344 embryo 22-24hr    429 larva L1    357 larva L2    290 larva L3 12hr old    286 larva L3 puffstage 1-2    402 larva L3 puffstage 3-6    554 larva L3 puffstage 7-9    581 white prepupae new    581 white prepupae 12hr    630 white prepupae 24hr    785 pupae 2d postWPP    538 pupae 3d postWPP    273 pupae 4d postWPP    209 adult male 01day    288 adult male 05day    378 adult male 30day    361 adult female 01day    526 adult female 05day    691 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0036249    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0036249 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult ovary, adult male accessory gland. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0036249 expression level Tissue   Expression Level Larval Central Nervous System    81.25 Larval Midgut    39.1 Larval Hindgut    35.7 Larval Malpighian Tubules    32.5 Larval Fat Body    33.6 Larval Salivary Gland    44.5 Larval Trachea    65.35 Larval Carcass no informative data Adult Head    48.5 Adult Eye    113.975 Adult Brain    88.1 Adult Thoracic-Abdominal Ganglion    64.3 Adult Crop    42.9 Adult Midgut no informative data Adult Hindgut    36.6 Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland    67.9 Adult Heart    41.65 Adult VirginFemale Spermatheca    53.1 Adult InseminatedFemale Spermatheca    68.6 Adult Ovary    125.9 Adult Testis    29.7 Adult Male Accessory Gland    104.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    81.25 Larval Midgut    39.1 Larval Hindgut    35.7 Larval Malpighian Tubules    32.5 Larval Fat Body    33.6 Larval Salivary Gland    44.5 Larval Trachea    65.35 Larval Carcass no informative data Adult Head    48.5 Adult Eye    113.975 Adult Brain    88.1 Adult Thoracic-Abdominal Ganglion    64.3 Adult Crop    42.9 Adult Midgut no informative data Adult Hindgut    36.6 Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland    67.9 Adult Heart    41.65 Adult VirginFemale Spermatheca    53.1 Adult InseminatedFemale Spermatheca    68.6 Adult Ovary    125.9 Adult Testis    29.7 Adult Male Accessory Gland    104.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    81.25 Larval Midgut    39.1 Larval Hindgut    35.7 Larval Malpighian Tubules    32.5 Larval Fat Body    33.6 Larval Salivary Gland    44.5 Larval Trachea    65.35 Larval Carcass no informative data Adult Head    48.5 Adult Eye    113.975 Adult Brain    88.1 Adult Thoracic-Abdominal Ganglion    64.3 Adult Crop    42.9 Adult Midgut no informative data Adult Hindgut    36.6 Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland    67.9 Adult Heart    41.65 Adult VirginFemale Spermatheca    53.1 Adult InseminatedFemale Spermatheca    68.6 Adult Ovary    125.9 Adult Testis    29.7 Adult Male Accessory Gland    104.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    81.25 Larval Midgut    39.1 Larval Hindgut    35.7 Larval Malpighian Tubules    32.5 Larval Fat Body    33.6 Larval Salivary Gland    44.5 Larval Trachea    65.35 Larval Carcass no informative data Adult Head    48.5 Adult Eye    113.975 Adult Brain    88.1 Adult Thoracic-Abdominal Ganglion    64.3 Adult Crop    42.9 Adult Midgut no informative data Adult Hindgut    36.6 Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland    67.9 Adult Heart    41.65 Adult VirginFemale Spermatheca    53.1 Adult InseminatedFemale Spermatheca    68.6 Adult Ovary    125.9 Adult Testis    29.7 Adult Male Accessory Gland    104.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0036249 expression level Tissue   Expression Level Larval Central Nervous System    81.25 Larval Midgut    39.1 Larval Hindgut    35.7 Larval Malpighian Tubules    32.5 Larval Fat Body    33.6 Larval Salivary Gland    44.5 Larval Trachea    65.35 Larval Carcass no informative data Adult Head    48.5 Adult Eye    113.975 Adult Brain    88.1 Adult Thoracic-Abdominal Ganglion    64.3 Adult Crop    42.9 Adult Midgut no informative data Adult Hindgut    36.6 Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland    67.9 Adult Heart    41.65 Adult VirginFemale Spermatheca    53.1 Adult InseminatedFemale Spermatheca    68.6 Adult Ovary    125.9 Adult Testis    29.7 Adult Male Accessory Gland    104.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    81.25 Larval Midgut    39.1 Larval Hindgut    35.7 Larval Malpighian Tubules    32.5 Larval Fat Body    33.6 Larval Salivary Gland    44.5 Larval Trachea    65.35 Larval Carcass no informative data Adult Head    48.5 Adult Eye    113.975 Adult Brain    88.1 Adult Thoracic-Abdominal Ganglion    64.3 Adult Crop    42.9 Adult Midgut no informative data Adult Hindgut    36.6 Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland    67.9 Adult Heart    41.65 Adult VirginFemale Spermatheca    53.1 Adult InseminatedFemale Spermatheca    68.6 Adult Ovary    125.9 Adult Testis    29.7 Adult Male Accessory Gland    104.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    81.25 Larval Midgut    39.1 Larval Hindgut    35.7 Larval Malpighian Tubules    32.5 Larval Fat Body    33.6 Larval Salivary Gland    44.5 Larval Trachea    65.35 Larval Carcass no informative data Adult Head    48.5 Adult Eye    113.975 Adult Brain    88.1 Adult Thoracic-Abdominal Ganglion    64.3 Adult Crop    42.9 Adult Midgut no informative data Adult Hindgut    36.6 Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland    67.9 Adult Heart    41.65 Adult VirginFemale Spermatheca    53.1 Adult InseminatedFemale Spermatheca    68.6 Adult Ovary    125.9 Adult Testis    29.7 Adult Male Accessory Gland    104.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    81.25 Larval Midgut    39.1 Larval Hindgut    35.7 Larval Malpighian Tubules    32.5 Larval Fat Body    33.6 Larval Salivary Gland    44.5 Larval Trachea    65.35 Larval Carcass no informative data Adult Head    48.5 Adult Eye    113.975 Adult Brain    88.1 Adult Thoracic-Abdominal Ganglion    64.3 Adult Crop    42.9 Adult Midgut no informative data Adult Hindgut    36.6 Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland    67.9 Adult Heart    41.65 Adult VirginFemale Spermatheca    53.1 Adult InseminatedFemale Spermatheca    68.6 Adult Ovary    125.9 Adult Testis    29.7 Adult Male Accessory Gland    104.5 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass no informative data Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut no informative data Adult Hindgut     Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass no informative data FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    48.5   NA  Eye    113.975   NA  Brain    88.1   81.25  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    64.3   NA  Crop    42.9   39.1  Midgut    no informative data   35.7  Hindgut    36.6   32.5  Malpighian Tubules    no informative data   33.6  Fat Body    no informative data   44.5  Salivary Gland    67.9   NA  Heart    41.65   65.35  Trachea    NA   NA  VirginFemale Spermatheca    53.1   NA  InseminatedFemale Spermatheca    68.6   NA  Ovary    125.9   NA  Testis    29.7   NA  Male Accessory Gland    104.5   no informative data  Carcass    no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_17
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036249 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG11560-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG11560GD7331 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG11560 Class Mutagen Stocks Known lesion CG11560G19947 P-element activity 1 -- CG11560NP5378 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG11560 Class Mutagen Stocks Known lesion CG11560GD7331 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG11560JF02230 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel6116 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD7331} NA P{TRiP.JF02230} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap binary system P{GawB}CG11560NP5378 No insertion of mobile activating element P{EP}CG11560G19947 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
DNA binding inferred from electronic annotation with InterPro:IPR003656 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG11560 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 64733 DroID - A comprehensive database of gene and protein interactions. • FBgn0036249 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39376
Orthologs
Genome-wide drosophilid orthologs	Dana\GF23587 Dere\GG15558 Dgri\GH14652 Dmoj\GI11637 Dper\GL15729 Dpse\GA23781 Dsec\GM25326 Dsim\GD14356 Dvir\GJ11319 Dwil\GK16966 Dyak\GE21882
Curated drosophilid orthologs	Dpse\GA11065
Linkouts	OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0239124 FBgn0218965 FBgn0198579 FBgn0186041 FBgn0180186 FBgn0245180 FBgn0153333 FBgn0134397 FBgn0122128 FBgn0107806 FBgn0100581
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	31939 y1 v1; P{TRiP.JF02230}attP2 27452 y1 w*; P{EP}CG11560G19947
Kyoto	104981 y* w*; P{GawB}CG11560NP5378 / TM6, P{UAS-lacZ.UW23-1}UW23-1
VDRC	v20051 w1118; P{GD7331}v20051
Genomic Clones ( 2 )
	BACR05P17 BACR14K14 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 11 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD43225 RE23851
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LP02002 RH58270
Other clones	150002 CK01.52D.H10 Dmel_dig_014901_0605_2100 Dmel_neb_014474_0619_1705 Dmel_neb_015389_0594_3213 EK043163 EK256217
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0036249 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39376
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_140290 RefSeq (Proteins) • NP_648547 DDBJ / EMBL / GenBank • AAF49962 AAL39803 AI511727 AW943650 AY069658 Entrez Gene - A searchable database of RefSeq genes. • 39376 UniProtKB/TrEMBL • Q8T004 Q9VTT4
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, BED-type predicted (IPR003656)
Linkouts
	BioGRID - A database of protein and genetic interactions • 64733 DroID - A comprehensive database of gene and protein interactions. • FBgn0036249 DRSC - Results from RNAi screens. • FBgn0036249 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036249 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG11560-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0036249 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39376 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39376 modMine - Data generated by the modENCODE project. • FBgn0036249 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0239124 FBgn0218965 FBgn0198579 FBgn0186041 FBgn0180186 FBgn0245180 FBgn0153333 FBgn0134397 FBgn0122128 FBgn0107806 FBgn0100581
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG11560 (Perkins et al., 2009)
Name Synonym
Secondary FlyBase IDs
References ( 12 )
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Review	Aravind, 2000, Trends Biochem. Sci. 25(9): 421--423 The BED finger, a novel DNA-binding domain in chromatin-boundary-element-binding proteins and transposases. [FBrf0132030]
Personal communication to FlyBase	Bellen, 2009.5.5, BDGP_2009_0507.GenExel.xml BDGP_2009_0507.GenExel.xml [FBrf0207859] Perkins et al., 2009, Update to TRiP stock collection. Update to TRiP stock collection. [FBrf0208864] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]