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Gene Dmel\mRpL20

General Information
Symbol	Dmel\mRpL20	Species	D. melanogaster
Name	mitochondrial ribosomal protein L20	Annotation symbol	CG11258
Feature type	protein_coding_gene	FlyBase ID	FBgn0036335
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	69F5-69F5	Sequence location	3L:13,010,249..13,010,967 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene mitochondrial ribosomal protein L20 is referred to in FlyBase by the symbol Dmel\mRpL20 (CG11258, FBgn0036335). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: structural constituent of ribosome. Based on sequence similarity, it is predicted to be involved in the biological process: translation. 2 alleles are reported. The phenotype of these alleles is annotated with: trichogen cell. It has one annotated transcript and one annotated polypeptide. Protein features are: Ribosomal protein L20. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 06-12 hour embryonic stages, during early larval stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1635706_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of mRpL20. Gene sequence location is 3L:13010249..13010967.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 69F5-69F5   Limits computationally determined from genome sequence between P{PZ}l(3)0692406924 and P{lacW}RpS12s2783
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\mRpL20 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.45 Low-frequency RNA-seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) mRpL20-RA FBtr0075897  NM_079327   602   150
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein mRpL20-PA   FBpp0075631   17.4   150   11.19     NP_524051   AAF49855
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein L20 (IPR005813)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA821036   AE014296 AAF49855   AI260898   AI404994   AX094141   BI353065   BI608698   BP555448   BT089020   CO262715   CO267567   CO270516   CO295490   CO304599   CO315006   CO316101   CZ479272   EC064016   EC089331   EC196712   EC203187   EC208058   EC210542   EC214309   EV591349
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VU36
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    271.525 Larval Midgut    107.6 Larval Hindgut    206.7 Larval Malpighian Tubules    65.6 Larval Fat Body    83.3 Larval Salivary Gland    246.4 Larval Trachea    210.725 Larval Carcass    151.65 Adult Head    190.9 Adult Eye    129.3 Adult Brain    210.1 Adult Thoracic-Abdominal Ganglion    236.9 Adult Crop    174.2 Adult Midgut    170 Adult Hindgut    240 Adult Malpighian Tubules    93.5 Adult Fat Body    223 Adult Salivary Gland    176.2 Adult Heart    182.8 Adult VirginFemale Spermatheca    119.4 Adult InseminatedFemale Spermatheca    153.9 Adult Ovary    373.6 Adult Testis    46.2 Adult Male Accessory Gland    197.1 Adult Carcass    183.5 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    271.525 Larval Midgut    107.6 Larval Hindgut    206.7 Larval Malpighian Tubules    65.6 Larval Fat Body    83.3 Larval Salivary Gland    246.4 Larval Trachea    210.725 Larval Carcass    151.65 Adult Head    190.9 Adult Eye    129.3 Adult Brain    210.1 Adult Thoracic-Abdominal Ganglion    236.9 Adult Crop    174.2 Adult Midgut    170 Adult Hindgut    240 Adult Malpighian Tubules    93.5 Adult Fat Body    223 Adult Salivary Gland    176.2 Adult Heart    182.8 Adult VirginFemale Spermatheca    119.4 Adult InseminatedFemale Spermatheca    153.9 Adult Ovary    373.6 Adult Testis    46.2 Adult Male Accessory Gland    197.1 Adult Carcass    183.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    271.525 Larval Midgut    107.6 Larval Hindgut    206.7 Larval Malpighian Tubules    65.6 Larval Fat Body    83.3 Larval Salivary Gland    246.4 Larval Trachea    210.725 Larval Carcass    151.65 Adult Head    190.9 Adult Eye    129.3 Adult Brain    210.1 Adult Thoracic-Abdominal Ganglion    236.9 Adult Crop    174.2 Adult Midgut    170 Adult Hindgut    240 Adult Malpighian Tubules    93.5 Adult Fat Body    223 Adult Salivary Gland    176.2 Adult Heart    182.8 Adult VirginFemale Spermatheca    119.4 Adult InseminatedFemale Spermatheca    153.9 Adult Ovary    373.6 Adult Testis    46.2 Adult Male Accessory Gland    197.1 Adult Carcass    183.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    271.525 Larval Midgut    107.6 Larval Hindgut    206.7 Larval Malpighian Tubules    65.6 Larval Fat Body    83.3 Larval Salivary Gland    246.4 Larval Trachea    210.725 Larval Carcass    151.65 Adult Head    190.9 Adult Eye    129.3 Adult Brain    210.1 Adult Thoracic-Abdominal Ganglion    236.9 Adult Crop    174.2 Adult Midgut    170 Adult Hindgut    240 Adult Malpighian Tubules    93.5 Adult Fat Body    223 Adult Salivary Gland    176.2 Adult Heart    182.8 Adult VirginFemale Spermatheca    119.4 Adult InseminatedFemale Spermatheca    153.9 Adult Ovary    373.6 Adult Testis    46.2 Adult Male Accessory Gland    197.1 Adult Carcass    183.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    271.525 Larval Midgut    107.6 Larval Hindgut    206.7 Larval Malpighian Tubules    65.6 Larval Fat Body    83.3 Larval Salivary Gland    246.4 Larval Trachea    210.725 Larval Carcass    151.65 Adult Head    190.9 Adult Eye    129.3 Adult Brain    210.1 Adult Thoracic-Abdominal Ganglion    236.9 Adult Crop    174.2 Adult Midgut    170 Adult Hindgut    240 Adult Malpighian Tubules    93.5 Adult Fat Body    223 Adult Salivary Gland    176.2 Adult Heart    182.8 Adult VirginFemale Spermatheca    119.4 Adult InseminatedFemale Spermatheca    153.9 Adult Ovary    373.6 Adult Testis    46.2 Adult Male Accessory Gland    197.1 Adult Carcass    183.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    271.525 Larval Midgut    107.6 Larval Hindgut    206.7 Larval Malpighian Tubules    65.6 Larval Fat Body    83.3 Larval Salivary Gland    246.4 Larval Trachea    210.725 Larval Carcass    151.65 Adult Head    190.9 Adult Eye    129.3 Adult Brain    210.1 Adult Thoracic-Abdominal Ganglion    236.9 Adult Crop    174.2 Adult Midgut    170 Adult Hindgut    240 Adult Malpighian Tubules    93.5 Adult Fat Body    223 Adult Salivary Gland    176.2 Adult Heart    182.8 Adult VirginFemale Spermatheca    119.4 Adult InseminatedFemale Spermatheca    153.9 Adult Ovary    373.6 Adult Testis    46.2 Adult Male Accessory Gland    197.1 Adult Carcass    183.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    271.525 Larval Midgut    107.6 Larval Hindgut    206.7 Larval Malpighian Tubules    65.6 Larval Fat Body    83.3 Larval Salivary Gland    246.4 Larval Trachea    210.725 Larval Carcass    151.65 Adult Head    190.9 Adult Eye    129.3 Adult Brain    210.1 Adult Thoracic-Abdominal Ganglion    236.9 Adult Crop    174.2 Adult Midgut    170 Adult Hindgut    240 Adult Malpighian Tubules    93.5 Adult Fat Body    223 Adult Salivary Gland    176.2 Adult Heart    182.8 Adult VirginFemale Spermatheca    119.4 Adult InseminatedFemale Spermatheca    153.9 Adult Ovary    373.6 Adult Testis    46.2 Adult Male Accessory Gland    197.1 Adult Carcass    183.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    271.525 Larval Midgut    107.6 Larval Hindgut    206.7 Larval Malpighian Tubules    65.6 Larval Fat Body    83.3 Larval Salivary Gland    246.4 Larval Trachea    210.725 Larval Carcass    151.65 Adult Head    190.9 Adult Eye    129.3 Adult Brain    210.1 Adult Thoracic-Abdominal Ganglion    236.9 Adult Crop    174.2 Adult Midgut    170 Adult Hindgut    240 Adult Malpighian Tubules    93.5 Adult Fat Body    223 Adult Salivary Gland    176.2 Adult Heart    182.8 Adult VirginFemale Spermatheca    119.4 Adult InseminatedFemale Spermatheca    153.9 Adult Ovary    373.6 Adult Testis    46.2 Adult Male Accessory Gland    197.1 Adult Carcass    183.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    190.9   NA  Eye    129.3   NA  Brain    210.1   271.525  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    236.9   NA  Crop    174.2   107.6  Midgut    170   206.7  Hindgut    240   65.6  Malpighian Tubules    93.5   83.3  Fat Body    223   246.4  Salivary Gland    176.2   NA  Heart    182.8   210.725  Trachea    NA   NA  VirginFemale Spermatheca    119.4   NA  InseminatedFemale Spermatheca    153.9   NA  Ovary    373.6   NA  Testis    46.2   NA  Male Accessory Gland    197.1   151.65  Carcass    183.5 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    12 central nervous system, pupae P8    13 head, virgin 1-day female    9 head, virgin 4-day female    10 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    6 head, mated 1-day male    6 head, mated 4-day male    7 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    9 digestive system, 4-day adult    10 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    13 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female    26 ovary, mated 4-day female    15 testis, mated 4-day male    8 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    12 central nervous system, pupae P8    13 head, virgin 1-day female    9 head, virgin 4-day female    10 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    6 head, mated 1-day male    6 head, mated 4-day male    7 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    9 digestive system, 4-day adult    10 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    13 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female  26 ovary, mated 4-day female    15 testis, mated 4-day male    8 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    12 central nervous system, pupae P8    13 head, virgin 1-day female    9 head, virgin 4-day female    10 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    6 head, mated 1-day male    6 head, mated 4-day male    7 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    9 digestive system, 4-day adult    10 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    13 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female    26 ovary, mated 4-day female    15 testis, mated 4-day male    8 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    12 central nervous system, pupae P8    13 head, virgin 1-day female    9 head, virgin 4-day female    10 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    6 head, mated 1-day male    6 head, mated 4-day male    7 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    9 digestive system, 4-day adult    10 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    13 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female    26 ovary, mated 4-day female    15 testis, mated 4-day male    8 accessory gland, mated 4-day male    7 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    12 central nervous system, pupae P8    13 head, virgin 1-day female    9 head, virgin 4-day female    10 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    6 head, mated 1-day male    6 head, mated 4-day male    7 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    9 digestive system, 4-day adult    10 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    13 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female    26 ovary, mated 4-day female    15 testis, mated 4-day male    8 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    12 central nervous system, pupae P8    13 head, virgin 1-day female    9 head, virgin 4-day female    10 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    6 head, mated 1-day male    6 head, mated 4-day male    7 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    9 digestive system, 4-day adult    10 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    13 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female  26 ovary, mated 4-day female    15 testis, mated 4-day male    8 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    12 central nervous system, pupae P8    13 head, virgin 1-day female    9 head, virgin 4-day female    10 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    6 head, mated 1-day male    6 head, mated 4-day male    7 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    9 digestive system, 4-day adult    10 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    13 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female    26 ovary, mated 4-day female    15 testis, mated 4-day male    8 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    12 central nervous system, pupae P8    13 head, virgin 1-day female    9 head, virgin 4-day female    10 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    7 head, mated 20-day female    6 head, mated 1-day male    6 head, mated 4-day male    7 head, mated 20-day male    8 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    9 digestive system, 4-day adult    10 digestive system, 20-day adult    8 fat body, larvae L3 wandering    3 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    13 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    8 ovary, virgin 4-day female    26 ovary, mated 4-day female    15 testis, mated 4-day male    8 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 06-12 hour embryonic stages, during early larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    32 embryo 02-04hr    19 embryo 04-06hr    13 embryo 06-08hr    17 embryo 08-10hr    29 embryo 10-12hr    61 embryo 12-14hr    48 embryo 14-16hr    36 embryo 16-18hr    45 embryo 18-20hr    40 embryo 20-22hr    41 embryo 22-24hr    43 larva L1    56 larva L2    68 larva L3 12hr old    45 larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    14 white prepupae 24hr    16 pupae 2d postWPP    32 pupae 3d postWPP    37 pupae 4d postWPP    15 adult male 01day    19 adult male 05day    15 adult male 30day    13 adult female 01day    23 adult female 05day    38 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (32) embryo 02-04hr    19 embryo 04-06hr    13 embryo 06-08hr    17 embryo 08-10hr  (29) embryo 10-12hr  (61) embryo 12-14hr  (48) embryo 14-16hr  (36) embryo 16-18hr  (45) embryo 18-20hr  (40) embryo 20-22hr  (41) embryo 22-24hr  (43) larva L1  (56) larva L2  (68) larva L3 12hr old  (45) larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    14 white prepupae 24hr    16 pupae 2d postWPP  (32) pupae 3d postWPP  (37) pupae 4d postWPP    15 adult male 01day    19 adult male 05day    15 adult male 30day    13 adult female 01day    23 adult female 05day  (38) adult female 30day  (37) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    32 embryo 02-04hr    19 embryo 04-06hr    13 embryo 06-08hr    17 embryo 08-10hr    29 embryo 10-12hr    61 embryo 12-14hr    48 embryo 14-16hr    36 embryo 16-18hr    45 embryo 18-20hr    40 embryo 20-22hr    41 embryo 22-24hr    43 larva L1    56 larva L2    68 larva L3 12hr old    45 larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    14 white prepupae 24hr    16 pupae 2d postWPP    32 pupae 3d postWPP    37 pupae 4d postWPP    15 adult male 01day    19 adult male 05day    15 adult male 30day    13 adult female 01day    23 adult female 05day    38 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    32 embryo 02-04hr    19 embryo 04-06hr    13 embryo 06-08hr    17 embryo 08-10hr    29 embryo 10-12hr    61 embryo 12-14hr    48 embryo 14-16hr    36 embryo 16-18hr    45 embryo 18-20hr    40 embryo 20-22hr    41 embryo 22-24hr    43 larva L1    56 larva L2    68 larva L3 12hr old    45 larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    14 white prepupae 24hr    16 pupae 2d postWPP    32 pupae 3d postWPP    37 pupae 4d postWPP    15 adult male 01day    19 adult male 05day    15 adult male 30day    13 adult female 01day    23 adult female 05day    38 adult female 30day    37 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    32 embryo 02-04hr    19 embryo 04-06hr    13 embryo 06-08hr    17 embryo 08-10hr    29 embryo 10-12hr    61 embryo 12-14hr    48 embryo 14-16hr    36 embryo 16-18hr    45 embryo 18-20hr    40 embryo 20-22hr    41 embryo 22-24hr    43 larva L1    56 larva L2    68 larva L3 12hr old    45 larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    14 white prepupae 24hr    16 pupae 2d postWPP    32 pupae 3d postWPP    37 pupae 4d postWPP    15 adult male 01day    19 adult male 05day    15 adult male 30day    13 adult female 01day    23 adult female 05day    38 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  32 embryo 02-04hr    19 embryo 04-06hr    13 embryo 06-08hr    17 embryo 08-10hr  29 embryo 10-12hr  (61) embryo 12-14hr  (48) embryo 14-16hr  (36) embryo 16-18hr  (45) embryo 18-20hr  (40) embryo 20-22hr  (41) embryo 22-24hr  (43) larva L1  (56) larva L2  (68) larva L3 12hr old  (45) larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    14 white prepupae 24hr    16 pupae 2d postWPP  32 pupae 3d postWPP  (37) pupae 4d postWPP    15 adult male 01day    19 adult male 05day    15 adult male 30day    13 adult female 01day    23 adult female 05day  (38) adult female 30day  (37) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    32 embryo 02-04hr    19 embryo 04-06hr    13 embryo 06-08hr    17 embryo 08-10hr    29 embryo 10-12hr    61 embryo 12-14hr    48 embryo 14-16hr    36 embryo 16-18hr    45 embryo 18-20hr    40 embryo 20-22hr    41 embryo 22-24hr    43 larva L1    56 larva L2    68 larva L3 12hr old    45 larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    14 white prepupae 24hr    16 pupae 2d postWPP    32 pupae 3d postWPP    37 pupae 4d postWPP    15 adult male 01day    19 adult male 05day    15 adult male 30day    13 adult female 01day    23 adult female 05day    38 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    32 embryo 02-04hr    19 embryo 04-06hr    13 embryo 06-08hr    17 embryo 08-10hr    29 embryo 10-12hr    61 embryo 12-14hr    48 embryo 14-16hr    36 embryo 16-18hr    45 embryo 18-20hr    40 embryo 20-22hr    41 embryo 22-24hr    43 larva L1    56 larva L2    68 larva L3 12hr old    45 larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    14 white prepupae 24hr    16 pupae 2d postWPP    32 pupae 3d postWPP    37 pupae 4d postWPP    15 adult male 01day    19 adult male 05day    15 adult male 30day    13 adult female 01day    23 adult female 05day    38 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    31 Schneider line 2 Sg4    49 embryonic 1182-4H    12 embryonic GM2    18 embryonic Kc167    13 embryonic S1    13 embryonic S3    41 leg disc CME L1    19 wing disc CME-W2    20 wing disc ML-DmD8    19 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    26 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3    41 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    29 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    18 tumorous blood cells mbn2    16 ovary fGS/OSS    12 ovary OSC    8 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (31) Schneider line 2 Sg4  (49) embryonic 1182-4H    12 embryonic GM2    18 embryonic Kc167    13 embryonic S1    13 embryonic S3  (41) leg disc CME L1    19 wing disc CME-W2    20 wing disc ML-DmD8    19 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    11 wing disc ML-DmD21  26 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3  (41) eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5  (29) mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    18 tumorous blood cells mbn2    16 ovary fGS/OSS    12 ovary OSC    8 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    31 Schneider line 2 Sg4    49 embryonic 1182-4H    12 embryonic GM2    18 embryonic Kc167    13 embryonic S1    13 embryonic S3    41 leg disc CME L1    19 wing disc CME-W2    20 wing disc ML-DmD8    19 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    26 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3    41 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    29 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    18 tumorous blood cells mbn2    16 ovary fGS/OSS    12 ovary OSC    8 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    31 Schneider line 2 Sg4    49 embryonic 1182-4H    12 embryonic GM2    18 embryonic Kc167    13 embryonic S1    13 embryonic S3    41 leg disc CME L1    19 wing disc CME-W2    20 wing disc ML-DmD8    19 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    26 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3    41 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    29 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    18 tumorous blood cells mbn2    16 ovary fGS/OSS    12 ovary OSC    8 ovary OSS    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    31 Schneider line 2 Sg4    49 embryonic 1182-4H    12 embryonic GM2    18 embryonic Kc167    13 embryonic S1    13 embryonic S3    41 leg disc CME L1    19 wing disc CME-W2    20 wing disc ML-DmD8    19 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    26 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3    41 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    29 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    18 tumorous blood cells mbn2    16 ovary fGS/OSS    12 ovary OSC    8 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  31 Schneider line 2 Sg4  (49) embryonic 1182-4H    12 embryonic GM2    18 embryonic Kc167    13 embryonic S1    13 embryonic S3  (41) leg disc CME L1    19 wing disc CME-W2    20 wing disc ML-DmD8    19 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    11 wing disc ML-DmD21  26 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3  (41) eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5  29 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    18 tumorous blood cells mbn2    16 ovary fGS/OSS    12 ovary OSC    8 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    31 Schneider line 2 Sg4    49 embryonic 1182-4H    12 embryonic GM2    18 embryonic Kc167    13 embryonic S1    13 embryonic S3    41 leg disc CME L1    19 wing disc CME-W2    20 wing disc ML-DmD8    19 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    26 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3    41 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    29 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    18 tumorous blood cells mbn2    16 ovary fGS/OSS    12 ovary OSC    8 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    31 Schneider line 2 Sg4    49 embryonic 1182-4H    12 embryonic GM2    18 embryonic Kc167    13 embryonic S1    13 embryonic S3    41 leg disc CME L1    19 wing disc CME-W2    20 wing disc ML-DmD8    19 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    26 wing disc ML-DmD32    14 haltere disc ML-DmD17-c3    41 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    29 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    18 tumorous blood cells mbn2    16 ovary fGS/OSS    12 ovary OSC    8 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    2 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    13 Copper 15 mM 48 hrs, 4-day adult    8 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    29 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    2 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    13 Copper 15 mM 48 hrs, 4-day adult    8 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3  (29) Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    2 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    13 Copper 15 mM 48 hrs, 4-day adult    8 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    29 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    2 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    13 Copper 15 mM 48 hrs, 4-day adult    8 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    29 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    2 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    13 Copper 15 mM 48 hrs, 4-day adult    8 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    29 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    2 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    13 Copper 15 mM 48 hrs, 4-day adult    8 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3  29 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    2 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    13 Copper 15 mM 48 hrs, 4-day adult    8 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    29 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    2 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    24 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    13 Copper 15 mM 48 hrs, 4-day adult    8 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    29 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_19
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036335 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG11258-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable mRpL20e01458 viable, with Scer\GAL4pnr-MD237 mRpL20GD13436 Sterility Allele fertile mRpL20e01458 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 mRpL20GD13436 Phenotype manifest in Allele trichogen cell, with Scer\GAL4pnr-MD237 mRpL20GD13436
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of mRpL20 Class Mutagen Stocks Known lesion mRpL20e01458 piggyBac transposase 2 --
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of mRpL20 Class Mutagen Stocks Known lesion mRpL20GD13436 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD13436} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{RB}mRpL20e01458 NA
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
rRNA binding inferred from electronic annotation with InterPro:IPR005813 (FlyBase Curators et al., 2004-) structural constituent of ribosome inferred from sequence or structural similarity with EMBL:AB049644 (Suzuki et al., 2001)
Biological Process
CV term Evidence References
translation inferred from sequence or structural similarity with EMBL:AB049644 (Suzuki et al., 2001)
Cellular Component
CV term Evidence References
mitochondrial large ribosomal subunit inferred from sequence or structural similarity with EMBL:AB049644 (Suzuki et al., 2001)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
mRpL20 - Atac1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - AttB anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG12237 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG12279 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG12519 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG14253 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG14590 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG17985 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG2921 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG32649 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG43795 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG4730 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG4847 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG5087 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG6330 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG7048 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG7222 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG7339 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG8602 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CG9346 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - Clc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - Cpr66Cb anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - Crk anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - CycB3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - DNApol-ι anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - Gad1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - GalNAc-T1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - Gen anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - Glycogenin anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - Golgin84 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - Iap2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - Nek2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - Obp44a anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - PCID2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - PGRP-SA anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - Ran anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - RhoBTB anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - RhoGDI anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - Sap130 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - X11L anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - bun anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - eIF-4E anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - gcl anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - grk anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - lin-28 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - scyl anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - slbo anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - thoc5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mRpL20 - βggt-II anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions mRpL20 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0036335 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39477
Orthologs
OrthoDB Orthologs (38) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG65MNRX Dipteran inclusive ortholog search EOG6HHPBR Insect inclusive ortholog search EOG6HHN02 Arthropod inclusive ortholog search EOG6K0P50 Metazoa inclusive ortholog search EOG61GG0D
Orthologs in Drosophila Species (EOG65MNRX)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\mRpL20     Drosophila simulans   Dsim\GD12681 Y   Drosophila sechellia   Dsec\GM24614 Y   Drosophila erecta   Dere\GG13788 Y   Drosophila yakuba   Dyak\GE20081 Y   Drosophila ananassae   Dana\GF25175 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA10871 Y   Drosophila persimilis   Dper\GL24871 Y   Drosophila willistoni   Dwil\GK16834 Y   Drosophila virilis   Dvir\GJ13973 Y   Drosophila mojavensis   Dmoj\GI13635 Y   Drosophila grimshawi   Dgri\GH14480 Y
Orthologs in non-Drosophila Dipterans (EOG6HHPBR)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL013964   Anopheles gambiae Malaria mosquito  Agam\AGAP001311   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ010000
Orthologs in non-Dipteran Insects (EOG6HHN02)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\mRpL20   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG036726   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH10516   Atta cephalotes Leafcutter ant  Acep\ACEP23293   Camponotus floridanus Florida carpenter ant  Cflo\CFLO14063   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL20657   Linepithema humile Argentine ant  Lhum\LH16834   Pogonomyrmex barbatus Red harvester ant  Pbar\PB12308   Solenopsis invicta Red fire ant  Sinv\SINV19231   Acyrthosiphon pisum Pea aphid  Apim\ACYPI007336   Bombyx mori Silkmoth  Bmor\BGIBMGA000399   Pediculus humanus Human body louse  Phum\PHUM495720   Tribolium castaneum Red flour beetle  Tcas\TC013079
Orthologs in non-Insect Arthropods (EOG6K0P50)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_304054   Ixodes scapularis Deer tick  Isca\ISCW012003
Orthologs in non-Arthropod Metazoa (EOG61GG0D)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\mrpl-20   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_018674gn   Danio rerio Zebrafish  Drer\mrpl20   Xenopus tropicalis Western clawed frog  Xtro\mrpl20   Gallus gallus Domestic chicken  Ggal\MRPL20   Mus musculus House mouse  Mmus\Mrpl20   Rattus norvegicus Norway rat  Rnor\Mrpl20   Homo sapiens Human  Hsap\MRPL20
Human Orthologs (1)
Gene OMIM HGNC Hsap\MRPL20
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD12681 Drosophila sechellia Dsec\GM24614 Drosophila erecta Dere\GG13788 Drosophila yakuba Dyak\GE20081 Drosophila ananassae Dana\GF25175 Drosophila pseudoobscura pseudoobscura Dpse\GA10871 Drosophila persimilis Dper\GL24871 Drosophila willistoni Dwil\GK16834 Drosophila virilis Dvir\GJ13973 Drosophila mojavensis Dmoj\GI13635 Drosophila grimshawi Dgri\GH14480
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	17953 w1118; PBac{RB}mRpL20e01458
Harvard	- PBac{RB}mRpL20e01458
VDRC	v23376 w1118; P{GD13436}v23376 v23377 w1118; P{GD13436}v23377
Genomic Clones ( 1 )
	BACR08G07 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 21 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LP04985
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH24885 GM05458 GM22080 LP04891 RH13352
Other clones	37981 77080 119160 122216 160268 CK01.102B.G6 Dmel_neb_014588_0414_1658 EK086159 EK099201 EK150841 EK210147 EK238734 EK245239 EK263645 FGM235D01
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0036335 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39477
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: mRpL20 CG11258 (Suzuki et al., 2001)
Source for database merge of	Source for merge of: mRpL20 anon-WO0118547.265 (FlyBase, 1996-)
Additional comments	Source for merge of mRpL20 anon-WO0118547.265 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	Area matching Drosophila ESTs AI404994 and AI260898. ESTs show evidence of alternative splicing. (Davies, 2001.3.15)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_079327 RefSeq (Proteins) • NP_524051 DDBJ / EMBL / GenBank • AAF49855 AI260898 AI404994 AX094141 CZ479272 Entrez Gene - A searchable database of RefSeq genes. • 39477 UniProtKB/TrEMBL • Q9VU36
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein L20 (IPR005813)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0036335 DRSC - Results from RNAi screens. • FBgn0036335 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036335 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG11258-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0036335 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39477 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39477 modMine - Data generated by the modENCODE project. • FBgn0036335
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	anon-WO0118547.265   CG11258 (Dimova et al., 2003, Suzuki et al., 2001, Marygold et al., 2007, Cammarato et al., 2011) L20 (Suzuki et al., 2001) mRpL20 (Marygold et al., 2007, Seong et al., 2011)
Name Synonym	mitochondrial ribosomal protein L20 (Suzuki et al., 2001, Cammarato et al., 2011)
Secondary FlyBase IDs
	FBgn0062134
References ( 20 )
Research paper	Casad et al., 2011, Genetics 189(3): 861--870 Cardiomyopathy Is Associated with Ribosomal Protein Gene Haplo-Insufficiency in Drosophila melanogaster. [FBrf0216591] Seong et al., 2011, Biogerontology 12(2): 93--107 Genome-wide analysis of low-dose irradiated male Drosophila melanogaster with extended longevity. [FBrf0213307] Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812] Marygold et al., 2007, Genome Biol. 8(10): R216 The ribosomal protein genes and Minute loci of Drosophila melanogaster. [FBrf0205398] Dimova et al., 2003, Genes Dev. 17(18): 2308--2320 Cell cycle-dependent and cell cycle-independent control of transcription by the Drosophila E2F/RB pathway. [FBrf0162136] Zinke et al., 2002, EMBO J. 21(22): 6162--6173 Nutrient control of gene expression in Drosophila: microarray analysis of starvation and sugar-dependent response. [FBrf0151960] Suzuki et al., 2001, J. Biol. Chem. 276(24): 21724--21736 Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria. [FBrf0136752]
Supplementary material	Cammarato et al., 2011, PLoS ONE 6(4): Table S1. Proteins & Peptides. [FBrf0214682] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file) Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Patent	Davies et al., 2001, World Patent 0118547: Essential genes and assays relating thereto. [FBrf0199103]
DNA/RNA sequence record	Davies, 2001.3.15, GenBank/EMBL/DDBJ: AX094141 Sequence 265 from Patent WO0118547. [FBrf0149963]