FlyBase Gene Report: Dmel\SRm160

General Information

Symbol

Dmel\SRm160

Species

D. melanogaster

Name

SRm160

Annotation Symbol

CG11274

Feature Type

protein_coding_gene

FlyBase ID

FBgn0036340

Gene Model Status

Current

Stock Availability

6 publicly available

Gene Snapshot

SRm160 (SRm160) encodes a conserved RNA-binding protein that participates in the exon junction complex and is involved in pre-mRNA splicing and 3' end formation. It participates in somatic sex determination, cell death, retinal development and the control of circadian rhythm. Direct targets include rl. [Date last reviewed: 2019-03-21]

Other Summaries

Alliance
Auto summary
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

69F6-69F6

Sequence location

3L:13,036,821..13,040,976 [+]

Recombination map

3-39

Sequence

Get Decorated FASTA

Genomic Maps

GBrowse JBrowse

Help me choose

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

GO Summary Ribbons

[Detailed GO annotations]

Protein Family (UniProt)

Protein Signatures (InterPro)

Molecular Function (GO)
[Detailed GO annotations]

Experimental Evidence

Predictions / Assertions

Summaries

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the GBrowse view of Dmel\SRm160 or the JBrowse view of Dmel\SRm160 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.45

Sequence Ontology: Class of Gene

gene_with_edited_transcript

(Rodriguez et al., 2012, Graveley et al., 2011)

nuclear_gene

protein_coding_gene

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

SRm160-RA

FBtr0075883

NM_140370

3862

954

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank

SRm160-PA

FBpp0075617

107.6

954

12.13

NP_648627

AAF49848

Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\SRm160 using the Feature Mapper tool.

External Data

Crossreferences

Linkouts

Gene Ontology (11 terms)

Molecular Function (0 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (0 terms)

Biological Process (7 terms)

Terms Based on Experimental Evidence (6 terms)

CV Term

Evidence

References

compound eye development

inferred from mutant phenotype

(Fan et al., 2014)

genitalia development

inferred from mutant phenotype

(Fan et al., 2014)

positive regulation of programmed cell death

inferred from mutant phenotype

(Fan et al., 2014)

regulation of alternative mRNA splicing, via spliceosome

inferred from direct assay

(Beckwith et al., 2017)

regulation of circadian rhythm

inferred from mutant phenotype

(Beckwith et al., 2017)

somatic sex determination

inferred from mutant phenotype

(Fan et al., 2014)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

mRNA splicing, via spliceosome

inferred by curator from GO:0071011,GO:0071013

(Herold et al., 2009)

Cellular Component (4 terms)

Terms Based on Experimental Evidence (3 terms)

CV Term

Evidence

References

catalytic step 2 spliceosome

inferred from high throughput direct assay

(Herold et al., 2009)

nucleus

inferred from direct assay

(Fan et al., 2014)

precatalytic spliceosome

inferred from high throughput direct assay

(Herold et al., 2009)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

exon-exon junction complex

traceable author statement

(Gatfield et al., 2003)

Expression Data

Expression Summary Ribbons

Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.

For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 2

organism | ubiquitous

(Fan et al., 2014)

embryonic stage 5 -- 6

organism | restricted

(Fan et al., 2014)

embryonic stage 9 -- 10

organism | segmentally repeated

(Fan et al., 2014)

embryonic stage 11 -- 12

ventral nerve cord

(Fan et al., 2014)

embryonic brain

(Fan et al., 2014)

embryonic stage 13 -- 14

embryonic/larval midgut

(Fan et al., 2014)

embryonic stage 13 -- 17

embryonic/larval central nervous system

(Fan et al., 2014)

third instar larval stage

morphogenetic furrow

(Fan et al., 2014)

eye disc

(Fan et al., 2014)

northern blot

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage -- adult stage

(Fan et al., 2014)

Comment: expression assayed in cultured cells

(Gatfield and Izaurralde, 2002)

Additional Descriptive Data

SRm160 transcripts are ubiquitous and at high levels in 0-1 hr embryos and then accumulate around the embryonic periphery at 2-3 hr. At 4-5 pattern they are observed in a segmental pattern. At 7-8 hr, they accumulate in the ventral nerve cord and brain. Later they are primarily restricted to the developing CNS with some expression in the midgut. By 16 hr, SRm160 is detected exclusively in the condensed CNS.

(Fan et al., 2014)

SRm160 transcripts are expressed in S2 cells.

(Gatfield and Izaurralde, 2002)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

immunolocalization

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 2

organism | ubiquitous

(Fan et al., 2014)

embryonic stage 4

organism | gradient

(Fan et al., 2014)

pole cell

(Fan et al., 2014)

embryonic stage 13 -- 14

embryonic/larval midgut

(Fan et al., 2014)

embryonic hemocyte primordium

(Fan et al., 2014)

embryonic/larval anus

(Fan et al., 2014)

third instar larval stage

ommatidial precursor cluster

(Fan et al., 2014)

eye disc | restricted

(Fan et al., 2014)

imaginal disc | ubiquitous

(Fan et al., 2014)

western blot

Stage

Tissue/Position (including subcellular localization)

Reference

Comment: expression assayed in cultured cells

(Gatfield and Izaurralde, 2002)

Additional Descriptive Data

SRm160 protein staining is ubiquitous in early embryos and is observed in a puctate pattern in nuclei. Staining remains punctate and nuclear until cellularization. At ~11 hr of development, low levels of protein are seen widely distributed around the embryo with higher concentrations in the midgut, anus, and regions of hemocyte development in the head area. Fairly uniform distribution of SRm160 protein is observed in imaginal discs, except in the eye disc, where higher levels are observed in differentiating photoreceptor precursors.

(Fan et al., 2014)

SRm160 protein isdetected in S2 cells.

(Gatfield and Izaurralde, 2002)

Marker for

Subcellular Localization

CV Term

Evidence

References

catalytic step 2 spliceosome

inferred from high throughput direct assay

(Herold et al., 2009)

nucleus

inferred from direct assay

(Fan et al., 2014)

precatalytic spliceosome

inferred from high throughput direct assay

(Herold et al., 2009)

Expression Deduced from Reporters

Reporter: P{SRm160-GAL4.3650}

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult brain | faint | restricted

(Beckwith et al., 2017)

s-LNv Pdf neuron | intense

(Beckwith et al., 2017)

accessory medulla | intense

(Beckwith et al., 2017)

High-Throughput Expression Data

Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\SRm160 in GBrowse 2

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\SRm160

View exonic expression by tissue for Dmel\SRm160

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0036340

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG11274-RA

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG11274

Flygut - An atlas of the Drosophila adult midgut

FBgn0036340

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, and Transgenic Constructs

Classical and Insertion Alleles ( 5 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 7 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of SRm160

Transgenic constructs containing regulatory region of SRm160

Deletions and Duplications ( 1 )

Disrupted in

Df(3L)Exel6261

(Ryder, 2004.4.26)

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal

SRm160^G18603

lethal, with Scer\GAL4^da.PU

lethal, with Scer\GAL4^nub-AC-62

SRm160^HMC03920

lethal, with Scer\GAL4^VP16.otu

SRm160^HMC03920

lethal | female limited, with Scer\GAL4^dome-PG14

SRm160^HMC03920

lethal | recessive

lethal - all die before end of pupal stage | male limited | heat sensitive, with Scer\GAL4^GMR.PU

SRm160^GE25979

partially lethal - majority die | female limited | heat sensitive, with Scer\GAL4^GMR.PU

SRm160^GE25979

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

SRm160^GD1618

viable, with Scer\GAL4^Mef2.PR

SRm160^GD1618

viable, with Scer\GAL4^pnr-MD237

SRm160^GD1618

viable, with Scer\GAL4^tin.CΔ4

SRm160^GD1618

Sterility

Allele

female fertile, with Scer\GAL4^esg.PU

SRm160^GE25979

fertile (with SRm160^G18603)

SRm160^GE25979

fertile (with SRm160^GE25979)

SRm160^G18603

male fertile, with Scer\GAL4^esg.PU

SRm160^GE25979

Other Phenotypes

Allele

body color defective, with Scer\GAL4^pnr-MD237

SRm160^GD1618

developmental rate defective | larval stage

SRm160^G18603

locomotor rhythm defective | adult stage, with Scer\GAL4^P2.4.Pdf

locomotor rhythm defective | adult stage, with Scer\GAL4^Pdf.Switch1a

SRm160^KK108396

locomotor rhythm defective | adult stage, with Scer\GAL4^tim.PE

SRm160^KK108396

locomotor rhythm defective | adult stage, with SRm160^GL00538, Scer\GAL4^P2.4.Pdf

SRm160^KK108396

locomotor rhythm defective | adult stage, with SRm160^GL00538, Scer\GAL4^tim.PE

SRm160^KK108396

locomotor rhythm defective | adult stage, with SRm160^KK108396, Scer\GAL4^P2.4.Pdf

SRm160^GL00538

locomotor rhythm defective | adult stage, with SRm160^KK108396, Scer\GAL4^tim.PE

SRm160^GL00538

small body | larval stage

SRm160^G18603

some die during embryonic stage, with Scer\GAL4^da.PU

SRm160^GE25979

some die during larval stage, with Scer\GAL4^da.PU

SRm160^GE25979

some die during pupal stage, with Scer\GAL4^da.PU

SRm160^GE25979

some die during pupal stage | male limited | heat sensitive, with Scer\GAL4^GMR.PU

SRm160^GE25979

visible, with Scer\GAL4^Bx-MS1096

SRm160^NIG.11274R

visible, with Scer\GAL4^GMR.PU

visible, with Scer\GAL4^pnr-MD237

SRm160^GD1618

visible | larval stage

SRm160^G18603

Phenotype manifest in

Allele

eye, with Scer\GAL4^GMR.PU

eye | female limited | heat sensitive, with Scer\GAL4^GMR.PU

SRm160^GE25979

male analia, with Scer\GAL4^esg.PU

SRm160^GE25979

male genitalia, with Scer\GAL4^esg.PU

SRm160^GE25979

mesothoracic tergum, with Scer\GAL4^pnr-MD237

SRm160^GD1618

ommatidium, with Scer\GAL4^GMR.PU

SRm160^GE25979

testis, with Scer\GAL4^esg.PU

SRm160^GE25979

trichogen cell, with Scer\GAL4^pnr-MD237

SRm160^GD1618

wing, with Scer\GAL4^Bx-MS1096

SRm160^NIG.11274R

Orthologs

Downloads

Download All DIOPT Orthologs

Download All OrthoDB Orthologs

Human Orthologs (via DIOPT v7.1)

Homo sapiens (Human) (1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Hsap\SRRM1

9 of 15

Yes

Model Organism Orthologs (via DIOPT v7.1)

Mus musculus (laboratory mouse) (1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Mmus\Srrm1

10 of 15

Yes

Rattus norvegicus (Norway rat) (1)

Rnor\Srrm1

6 of 13

Yes

Xenopus tropicalis (Western clawed frog) (1)

Xtro\srrm1

1 of 12

Yes

Danio rerio (Zebrafish) (1)

Drer\srrm1

8 of 15

Yes

Caenorhabditis elegans (Nematode, roundworm) (1)

Cele\rsr-1

10 of 15

Yes

Arabidopsis thaliana (thale-cress) (1)

Atha\AT2G29210

5 of 9

Yes

Saccharomyces cerevisiae (Brewer's yeast) (0)

No records found.

Schizosaccharomyces pombe (Fission yeast) (1)

Spom\SPCC825.05c

5 of 12

Yes

Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG09190ADY )

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Dmel\SRm160

Drosophila suzukii

Spotted wing Drosophila

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA23761

Drosophila persimilis

Dper\GL25328

Drosophila persimilis

Dper\GL25329

Drosophila willistoni

Dwil\GK17424

Drosophila virilis

Dvir\GJ13461

Drosophila mojavensis

Dmoj\GI11751

Drosophila grimshawi

Dgri\GH17142

Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091503QJ )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Musca domestica

House fly

Mdoa\17009571

Glossina morsitans

Tsetse fly

Gmor\GMOY011223

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_07489

Mayetiola destructor

Hessian fly

Mdes\Mdes001414

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL017526

Anopheles darlingi

American malaria mosquito

Adar\ADAC007922

Anopheles gambiae

Malaria mosquito

Agam\AGAP005366

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ003014

Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W0J8S )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Bombyx mori

Silkmoth

Bmor\BGIBMGA000312

Danaus plexippus

Monarch butterfly

Dple\DPOGS207961-PA

Danaus plexippus

Monarch butterfly

Dple\DPOGS206181-PA

Heliconius melpomene

Postman butterfly

Hmel\HMEL012814

Apis florea

Little honeybee

Aflo\2151263140

Apis mellifera

Western honey bee

Amel\GB51055

Apis mellifera

Western honey bee

Amel\GB51054

Apis mellifera

Western honey bee

Amel\GB51052

Bombus impatiens

Common eastern bumble bee

Bimp\BIMP14163

Bombus terrestris

Buff-tailed bumblebee

Bter\15213618

Linepithema humile

Argentine ant

Lhum\LH13678

Linepithema humile

Argentine ant

Lhum\LH13674

Linepithema humile

Argentine ant

Lhum\LH13679

Megachile rotundata

Alfalfa leafcutting bee

Mrot\MROTU:001952

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG011281

Tribolium castaneum

Red flour beetle

Tcas\TC013178

Pediculus humanus

Human body louse

Phum\PHUM150090

Rhodnius prolixus

Kissing bug

Rpro\RPRC006631

Cimex lectularius

Bed bug

Clec\CLEC002714

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI001601

Zootermopsis nevadensis

Nevada dampwood termite

Znev\Znev_11560

Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X0JD7 )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strigamia maritima

European centipede

Smar\SMAR004788

Ixodes scapularis

Black-legged tick

Isca\ISCW013151

Stegodyphus mimosarum

African social velvet spider

Smim\KFM75376.1

Tetranychus urticae

Two-spotted spider mite

Turt\tetur01g01860

Daphnia pulex

Water flea

Dpux\DAPPUDRAFT_313769

Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G0MTF )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strongylocentrotus purpuratus

Purple sea urchin

Spur\Sp-Srrm1

Ciona intestinalis

Vase tunicate

Cint\ENSCING00000022242

Gallus gallus

Domestic chicken

Ggal\SRRM1

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v7.1)

Drosophila melanogaster (Fruit fly) (1)

Gene Symbol

Score

Source

Alignment

1 of 10

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Model Summary Ribbon

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Comments on Models/Modifiers Based on Experimental Evidence ( 0 )

Disease Associations of Human Orthologs (via DIOPT v7.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

SRRM1; serine and arginine repetitive matrix 1

9 of 15

605975

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Interactions Browser

Summary of Genetic Interactions

esyN Network Diagram

esyN Network Key:

Suppression

Enhancement

View in Interactions Browser

Please look at the allele data for full details of the genetic interactions

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

suppressible

(Fan et al., 2014)

suppressible

(Fan et al., 2014)

suppressible

(Fan et al., 2014)

enhanceable

(Fan et al., 2014)

suppressible

(Fan et al., 2014)

suppressible

(Beckwith et al., 2017)

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

enhanceable

(Fan et al., 2014)

suppressible

(Fan et al., 2014)

External Data

Linkouts

BioGRID - A database of protein and genetic interactions.

64828

DroID - A comprehensive database of gene and protein interactions.

FBgn0036340

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

39483

MIST (genetic) - An integrated Molecular Interaction Database

SRm160

MIST (protein-protein) - An integrated Molecular Interaction Database

SRm160

Pathways

Gene Group - Pathway Membership (FlyBase)

External Data

Linkouts

KEGG Pathways - Wiring diagrams of molecular interactions, reactions and relations.

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

3-39

Cytogenetic map

69F6-69F6

Sequence location

3L:13,036,821..13,040,976 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

69F6-69F6

Limits computationally determined from genome sequence between P{lacW}RpS12^s2783 and P{PZ}l(3)04220⁰⁴²²⁰&P{lacW}l(3)j10B6^j10B6

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

3-39

(FlyBase, 2016)

3-34.0

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (6)

Bloomington

63985

y¹ v¹; P{TRiP.HMJ30298}attP40

26938

y¹ w^*; P{EP}SRm160^G18603

55205

y¹ sc^* v¹ sev²¹; P{TRiP.HMC03920}attP40

36578

y¹ sc^* v¹ sev²¹; P{TRiP.GL00538}attP2/TM3, Sb¹

VDRC

v100751

P{KK108396}VIE-260B

v6439

w¹¹¹⁸; P{GD1618}v6439

Genomic Clones (10)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (79)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequences

BDGP DGC clones

RE71183

Other clones

FI04407

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0036340

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0036340

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

39483

Antibody Information

Laboratory Generated Antibodies

polyclonal

(Qiu et al., 2019)

Commercially Available Antibodies

Other Information

Relationship to Other Genes

Source for database identify of

Source for database merge of

Additional comments

Other Comments

Origin and Etymology

Discoverer

Etymology

Identification

External Crossreferences and Linkouts ( 38 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

39483

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0036340

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG11274

Flygut - An atlas of the Drosophila adult midgut

FBgn0036340

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

39483

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

Dmel_CG11274

KEGG Pathways - Wiring diagrams of molecular interactions, reactions and relations.

mRNA
RNA

modMine - A data warehouse for the modENCODE project

FBgn0036340

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Linkouts

BioGRID - A database of protein and genetic interactions.

64828

DroID - A comprehensive database of gene and protein interactions.

FBgn0036340

DRSC - Results frm RNAi screens

FBgn0036340

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0036340

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG11274-RA

FlyMine - An integrated database for Drosophila genomics

FBgn0036340

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

39483

KEGG Pathways - Wiring diagrams of molecular interactions, reactions and relations.

MIST (genetic) - An integrated Molecular Interaction Database

SRm160

MIST (protein-protein) - An integrated Molecular Interaction Database

SRm160

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Synonyms and Secondary IDs (3)

Reported As

Symbol Synonym

Name Synonyms

SRm160

Secondary FlyBase IDs

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

References (50)

Report Sections

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