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Gene Dmel\CG9238

General Information
Symbol	Dmel\CG9238	Species	D. melanogaster
Name		Annotation symbol	CG9238
Feature type	protein_coding_gene	FlyBase ID	FBgn0036428
Gene Model Status	Current	Stock availability	7 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	70E1-70E2	Sequence location	3L:14,534,037..14,544,075 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG9238 (FBgn0036428). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: protein phosphatase type 1 regulator activity; protein phosphatase 1 binding. There is experimental evidence that it is involved in the biological process: behavioral response to ethanol. 8 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Protein phosphatase 1, glycogen targeting subunit, Metazoa; Putative phosphatase regulatory subunit. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, adult heart, larval/adult fat body, adult salivary gland, adult female reproductive system, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, larval salivary gland, larval trachea, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1632222_a_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG9238. Gene sequence location is 3L:14534037..14544075.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 70E1-70E2   Limits computationally determined from genome sequence between P{PZ}Mpcp00564 and P{PZ}l(3)rO220rO220
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG9238 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG9238-RA FBtr0075723  NM_168589   2084   330 CG9238-RB FBtr0075724  NM_140451   2737   384 CG9238-RC FBtr0333037  NM_001274913   2846   384
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG9238-PA   FBpp0075466   37.0   330   6.85     NP_729979   AAF49733 CG9238-PB   FBpp0075467   43.1   384   7.50     NP_648708   AAF49732 CG9238-PC   FBpp0305251   43.1   384   7.50     NP_001261842   AGB94535
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Putative phosphatase regulatory subunit (IPR005036) Protein phosphatase 1, glycogen targeting subunit, Metazoa (IPR017434)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA264572   AA264865   AA391153   AA439204   AA439894   AA441269   AA538777   AA540760   AA698166   AA816408   AA990706   AE014296 AAF49732   AE014296 AAF49733   AE014296 AGB94535   AI061812   AI135560   AI293205   AI389710   AI518596   AX094276   AY075545 AAL68352   AY095086 AAM11414   BH011519   BI164499   BI164748   BI167400   BI168966   BI172635   BI216449   BI236020   BI236346   BI239328   BI240816   BI357511   BI358010   BI358317   BI358458   BI361933   BI362317   BI363260   BI369984   BI373937   BI373952   BI374868   BI483425   BI484076   BI485530   BI563834   BI564021   BI565546   BI565800   BI567321   BI573957   BI574752   BI575026   BI575635   BI576580   BI577233   BI578607   BI578750   BI578874   BI579968   BI580360   BI581242   BI581260   BI581761   BI583628   BI585485   BI588890   BI588905   BI592714   BI605787   BI608620   BI609641   BI609829   BI612311   BI613006   BI613945   BI614361   BI616422   BI619679   BI620352   BI622202   BI624211   BI626950   BI627934   BI631478   BI631706   BQ103624   BT081382   CO190633   CO193046   CO194423   CO196649   CO262752   CO266565   CO273497   CO273976   CO276645   CO278643   CO280117   CO282538   CO282831   CO282837   CO283771   CO287260   CO288902   CO295447   CO304682   CO320276   CO322062   CO322295   CO325355   CO327031   CO329150   CO333270   CO341078   CZ478306   CZ478307   CZ480890   EC053807   EC060491   EC062092   EC063446   EC068452   EC071678   EC072040   EC073577   EC074549   EC079107   EC084131   EC199294   EC200463   EC207753   EC208449   EC213866   EC214515   EC216011   EC219463   EC222507   EC226960   EC230179   EC236151   EC240379   EC245882   EC249032   EC251231   EC259338   EC260175   EV579925   EV584520   EV593255   EV593258   EV595210   EV598615   EV598903   EV599673   FD586848   FD586975   FD587310   GH739033   GH739092   GH739171   GH743254   GH743673   GH746120   GH761897   GH764451   GH764486   GH766145   GH768440   GH768983   GH769874
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8SWT8 Q9VUF3 Q8SXW5
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   anlage in statu nascendi   (Fisher et al., 2012) anterior endoderm anlage   (Fisher et al., 2012) Comment:anlage in statu nascendi central brain anlage in statu nascendi   (Fisher et al., 2012) dorsal ectoderm anlage   (Fisher et al., 2012) Comment:anlage in statu nascendi endoderm anlage   (Fisher et al., 2012) Comment:anlage in statu nascendi head mesoderm anlage   (Fisher et al., 2012) Comment:anlage in statu nascendi mesoderm anlage   (Fisher et al., 2012) Comment:anlage in statu nascendi organism | ubiquitous   (Fisher et al., 2012) yolk nucleus   (Fisher et al., 2012) antennal anlage in statu nascendi   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage in statu nascendi dorsal head epidermis anlage in statu nascendi   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage in statu nascendi visual anlage in statu nascendi   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage in statu nascendi embryonic stage 7 -- 8   amnioserosa anlage   (Fisher et al., 2012) antennal anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage central brain anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage dorsal head epidermis anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage visual anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage anterior endoderm anlage   (Fisher et al., 2012) dorsal ectoderm   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) yolk nucleus   (Fisher et al., 2012) embryonic stage 9 -- 10   amnioserosa   (Fisher et al., 2012) amnioserosa primordium   (Fisher et al., 2012) antennal primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium central brain primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium visual primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium dorsal head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium lateral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium ventral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium anterior endoderm   (Fisher et al., 2012) dorsal ectoderm   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) hypopharynx inclusive primordium   (Fisher et al., 2012) inclusive hindgut primordium   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) embryonic stage 11 -- 12   amnioserosa   (Fisher et al., 2012) antennal primordium   (Fisher et al., 2012) Comment:reported as procephalon primordium central brain primordium   (Fisher et al., 2012) Comment:reported as procephalon primordium dorsal head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalon primordium lateral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalon primordium ventral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalon primordium visual primordium   (Fisher et al., 2012) Comment:reported as procephalon primordium anterior midgut primordium   (Fisher et al., 2012) atrium | precursor   (Fisher et al., 2012) Comment:reported as atrium primordium clypeo-labral primordium   (Fisher et al., 2012) dorsal epidermis primordium   (Fisher et al., 2012) foregut primordium   (Fisher et al., 2012) hindgut proper primordium   (Fisher et al., 2012) hypopharynx proper primordium   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) salivary gland body primordium   (Fisher et al., 2012) ventral epidermis primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   atrium   (Fisher et al., 2012) embryonic dorsal epidermis   (Fisher et al., 2012) embryonic epipharynx   (Fisher et al., 2012) embryonic esophagus   (Fisher et al., 2012) embryonic foregut   (Fisher et al., 2012) embryonic head epidermis   (Fisher et al., 2012) embryonic hypopharynx   (Fisher et al., 2012) embryonic ventral epidermis   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval salivary gland   (Fisher et al., 2012) embryonic/larval salivary gland body   (Fisher et al., 2012) yolk nucleus   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, adult heart, larval/adult fat body, adult salivary gland, adult female reproductive system, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, larval salivary gland, larval trachea, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    105.075 Larval Midgut    267.6 Larval Hindgut    264.5 Larval Malpighian Tubules    461 Larval Fat Body    876.8 Larval Salivary Gland    129.5 Larval Trachea    126.475 Larval Carcass    307.425 Adult Head    1084.1 Adult Eye    912.6 Adult Brain    50.3 Adult Thoracic-Abdominal Ganglion    60.2 Adult Crop    1641.6 Adult Midgut    133.1 Adult Hindgut    360.7 Adult Malpighian Tubules    206.4 Adult Fat Body    3789.7 Adult Salivary Gland    782.5 Adult Heart    2275.7 Adult VirginFemale Spermatheca    2866.3 Adult InseminatedFemale Spermatheca    2461.9 Adult Ovary    1033 Adult Testis    23.7 Adult Male Accessory Gland    24.5 Adult Carcass    1788.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    105.075 Larval Midgut    267.6 Larval Hindgut    264.5 Larval Malpighian Tubules    461 Larval Fat Body  (876.8) Larval Salivary Gland    129.5 Larval Trachea    126.475 Larval Carcass    307.425 Adult Head  (1084.1) Adult Eye  (912.6) Adult Brain    50.3 Adult Thoracic-Abdominal Ganglion    60.2 Adult Crop  (1641.6) Adult Midgut    133.1 Adult Hindgut    360.7 Adult Malpighian Tubules    206.4 Adult Fat Body  (3789.7) Adult Salivary Gland  (782.5) Adult Heart  (2275.7) Adult VirginFemale Spermatheca  (2866.3) Adult InseminatedFemale Spermatheca  (2461.9) Adult Ovary  (1033) Adult Testis    23.7 Adult Male Accessory Gland    24.5 Adult Carcass  (1788.5) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    105.075 Larval Midgut    267.6 Larval Hindgut    264.5 Larval Malpighian Tubules    461 Larval Fat Body    876.8 Larval Salivary Gland    129.5 Larval Trachea    126.475 Larval Carcass    307.425 Adult Head  (1084.1) Adult Eye    912.6 Adult Brain    50.3 Adult Thoracic-Abdominal Ganglion    60.2 Adult Crop  (1641.6) Adult Midgut    133.1 Adult Hindgut    360.7 Adult Malpighian Tubules    206.4 Adult Fat Body  (3789.7) Adult Salivary Gland    782.5 Adult Heart  (2275.7) Adult VirginFemale Spermatheca  (2866.3) Adult InseminatedFemale Spermatheca  (2461.9) Adult Ovary  1033 Adult Testis    23.7 Adult Male Accessory Gland    24.5 Adult Carcass  (1788.5) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    105.075 Larval Midgut    267.6 Larval Hindgut    264.5 Larval Malpighian Tubules    461 Larval Fat Body    876.8 Larval Salivary Gland    129.5 Larval Trachea    126.475 Larval Carcass    307.425 Adult Head    1084.1 Adult Eye    912.6 Adult Brain    50.3 Adult Thoracic-Abdominal Ganglion    60.2 Adult Crop    1641.6 Adult Midgut    133.1 Adult Hindgut    360.7 Adult Malpighian Tubules    206.4 Adult Fat Body    3789.7 Adult Salivary Gland    782.5 Adult Heart    2275.7 Adult VirginFemale Spermatheca    2866.3 Adult InseminatedFemale Spermatheca    2461.9 Adult Ovary    1033 Adult Testis    23.7 Adult Male Accessory Gland    24.5 Adult Carcass    1788.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    105.075 Larval Midgut    267.6 Larval Hindgut    264.5 Larval Malpighian Tubules    461 Larval Fat Body    876.8 Larval Salivary Gland    129.5 Larval Trachea    126.475 Larval Carcass    307.425 Adult Head    1084.1 Adult Eye    912.6 Adult Brain    50.3 Adult Thoracic-Abdominal Ganglion    60.2 Adult Crop    1641.6 Adult Midgut    133.1 Adult Hindgut    360.7 Adult Malpighian Tubules    206.4 Adult Fat Body    3789.7 Adult Salivary Gland    782.5 Adult Heart    2275.7 Adult VirginFemale Spermatheca    2866.3 Adult InseminatedFemale Spermatheca    2461.9 Adult Ovary    1033 Adult Testis    23.7 Adult Male Accessory Gland    24.5 Adult Carcass    1788.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    105.075 Larval Midgut    267.6 Larval Hindgut    264.5 Larval Malpighian Tubules    461 Larval Fat Body  (876.8) Larval Salivary Gland    129.5 Larval Trachea    126.475 Larval Carcass    307.425 Adult Head  (1084.1) Adult Eye  (912.6) Adult Brain    50.3 Adult Thoracic-Abdominal Ganglion    60.2 Adult Crop  (1641.6) Adult Midgut    133.1 Adult Hindgut    360.7 Adult Malpighian Tubules    206.4 Adult Fat Body  (3789.7) Adult Salivary Gland  782.5 Adult Heart  (2275.7) Adult VirginFemale Spermatheca  (2866.3) Adult InseminatedFemale Spermatheca  (2461.9) Adult Ovary  (1033) Adult Testis    23.7 Adult Male Accessory Gland    24.5 Adult Carcass  (1788.5) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    105.075 Larval Midgut    267.6 Larval Hindgut    264.5 Larval Malpighian Tubules    461 Larval Fat Body    876.8 Larval Salivary Gland    129.5 Larval Trachea    126.475 Larval Carcass    307.425 Adult Head  1084.1 Adult Eye    912.6 Adult Brain    50.3 Adult Thoracic-Abdominal Ganglion    60.2 Adult Crop  1641.6 Adult Midgut    133.1 Adult Hindgut    360.7 Adult Malpighian Tubules    206.4 Adult Fat Body  (3789.7) Adult Salivary Gland    782.5 Adult Heart  (2275.7) Adult VirginFemale Spermatheca  (2866.3) Adult InseminatedFemale Spermatheca  (2461.9) Adult Ovary  1033 Adult Testis    23.7 Adult Male Accessory Gland    24.5 Adult Carcass  (1788.5) Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    105.075 Larval Midgut    267.6 Larval Hindgut    264.5 Larval Malpighian Tubules    461 Larval Fat Body    876.8 Larval Salivary Gland    129.5 Larval Trachea    126.475 Larval Carcass    307.425 Adult Head    1084.1 Adult Eye    912.6 Adult Brain    50.3 Adult Thoracic-Abdominal Ganglion    60.2 Adult Crop    1641.6 Adult Midgut    133.1 Adult Hindgut    360.7 Adult Malpighian Tubules    206.4 Adult Fat Body    3789.7 Adult Salivary Gland    782.5 Adult Heart    2275.7 Adult VirginFemale Spermatheca    2866.3 Adult InseminatedFemale Spermatheca    2461.9 Adult Ovary    1033 Adult Testis    23.7 Adult Male Accessory Gland    24.5 Adult Carcass    1788.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    1084.1   NA  Eye    912.6   NA  Brain    50.3   105.075  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    60.2   NA  Crop    1641.6   267.6  Midgut    133.1   264.5  Hindgut    360.7   461  Malpighian Tubules    206.4   876.8  Fat Body    3789.7   129.5  Salivary Gland    782.5   NA  Heart    2275.7   126.475  Trachea    NA   NA  VirginFemale Spermatheca    2866.3   NA  InseminatedFemale Spermatheca    2461.9   NA  Ovary    1033   NA  Testis    23.7   NA  Male Accessory Gland    24.5   307.425  Carcass    1788.5 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female    42 head, virgin 4-day female    65 head, virgin 20-day female    79 head, mated 1-day female    46 head, mated 4-day female    36 head, mated 20-day female    51 head, mated 1-day male    44 head, mated 4-day male    42 head, mated 20-day male    50 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    26 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    16 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering    45 fat body, white prepupae    44 fat body, pupae P8    51 carcass, larvae L3 wandering    12 carcass, 1-day adult    60 carcass, 4-day adult    70 carcass, 20-day adult    72 ovary, virgin 4-day female    86 ovary, mated 4-day female    62 testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female  (42) head, virgin 4-day female  (65) head, virgin 20-day female  (79) head, mated 1-day female  (46) head, mated 4-day female  (36) head, mated 20-day female  (51) head, mated 1-day male  (44) head, mated 4-day male  (42) head, mated 20-day male  (50) salivary gland, larvae L3 wandering    5 salivary gland, white prepupae  26 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    16 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering  (45) fat body, white prepupae  (44) fat body, pupae P8  (51) carcass, larvae L3 wandering    12 carcass, 1-day adult  (60) carcass, 4-day adult  (70) carcass, 20-day adult  (72) ovary, virgin 4-day female  (86) ovary, mated 4-day female  (62) testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female    42 head, virgin 4-day female    65 head, virgin 20-day female    79 head, mated 1-day female    46 head, mated 4-day female    36 head, mated 20-day female    51 head, mated 1-day male    44 head, mated 4-day male    42 head, mated 20-day male    50 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    26 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    16 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering    45 fat body, white prepupae    44 fat body, pupae P8    51 carcass, larvae L3 wandering    12 carcass, 1-day adult    60 carcass, 4-day adult    70 carcass, 20-day adult    72 ovary, virgin 4-day female    86 ovary, mated 4-day female    62 testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female    42 head, virgin 4-day female    65 head, virgin 20-day female    79 head, mated 1-day female    46 head, mated 4-day female    36 head, mated 20-day female    51 head, mated 1-day male    44 head, mated 4-day male    42 head, mated 20-day male    50 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    26 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    16 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering    45 fat body, white prepupae    44 fat body, pupae P8    51 carcass, larvae L3 wandering    12 carcass, 1-day adult    60 carcass, 4-day adult    70 carcass, 20-day adult    72 ovary, virgin 4-day female    86 ovary, mated 4-day female    62 testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female    42 head, virgin 4-day female    65 head, virgin 20-day female    79 head, mated 1-day female    46 head, mated 4-day female    36 head, mated 20-day female    51 head, mated 1-day male    44 head, mated 4-day male    42 head, mated 20-day male    50 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    26 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    16 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering    45 fat body, white prepupae    44 fat body, pupae P8    51 carcass, larvae L3 wandering    12 carcass, 1-day adult    60 carcass, 4-day adult    70 carcass, 20-day adult    72 ovary, virgin 4-day female    86 ovary, mated 4-day female    62 testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female  (42) head, virgin 4-day female  (65) head, virgin 20-day female  (79) head, mated 1-day female  (46) head, mated 4-day female  (36) head, mated 20-day female  (51) head, mated 1-day male  (44) head, mated 4-day male  (42) head, mated 20-day male  (50) salivary gland, larvae L3 wandering    5 salivary gland, white prepupae  26 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    16 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering  (45) fat body, white prepupae  (44) fat body, pupae P8  (51) carcass, larvae L3 wandering    12 carcass, 1-day adult  (60) carcass, 4-day adult  (70) carcass, 20-day adult  (72) ovary, virgin 4-day female  (86) ovary, mated 4-day female  (62) testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female    42 head, virgin 4-day female    65 head, virgin 20-day female    79 head, mated 1-day female    46 head, mated 4-day female    36 head, mated 20-day female    51 head, mated 1-day male    44 head, mated 4-day male    42 head, mated 20-day male    50 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    26 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    16 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering    45 fat body, white prepupae    44 fat body, pupae P8    51 carcass, larvae L3 wandering    12 carcass, 1-day adult    60 carcass, 4-day adult    70 carcass, 20-day adult    72 ovary, virgin 4-day female    86 ovary, mated 4-day female    62 testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female    42 head, virgin 4-day female    65 head, virgin 20-day female    79 head, mated 1-day female    46 head, mated 4-day female    36 head, mated 20-day female    51 head, mated 1-day male    44 head, mated 4-day male    42 head, mated 20-day male    50 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    26 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    16 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering    45 fat body, white prepupae    44 fat body, pupae P8    51 carcass, larvae L3 wandering    12 carcass, 1-day adult    60 carcass, 4-day adult    70 carcass, 20-day adult    72 ovary, virgin 4-day female    86 ovary, mated 4-day female    62 testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    72 embryo 02-04hr    73 embryo 04-06hr    56 embryo 06-08hr    46 embryo 08-10hr    73 embryo 10-12hr    56 embryo 12-14hr    64 embryo 14-16hr    45 embryo 16-18hr    48 embryo 18-20hr    35 embryo 20-22hr    36 embryo 22-24hr    45 larva L1    6 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    16 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    13 white prepupae new    24 white prepupae 12hr    40 white prepupae 24hr    28 pupae 2d postWPP    34 pupae 3d postWPP    13 pupae 4d postWPP    23 adult male 01day    41 adult male 05day    35 adult male 30day    30 adult female 01day    31 adult female 05day    51 adult female 30day    46 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (72) embryo 02-04hr  (73) embryo 04-06hr  (56) embryo 06-08hr  (46) embryo 08-10hr  (73) embryo 10-12hr  (56) embryo 12-14hr  (64) embryo 14-16hr  (45) embryo 16-18hr  (48) embryo 18-20hr  (35) embryo 20-22hr  (36) embryo 22-24hr  (45) larva L1    6 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    16 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    13 white prepupae new    24 white prepupae 12hr  (40) white prepupae 24hr  (28) pupae 2d postWPP  (34) pupae 3d postWPP    13 pupae 4d postWPP    23 adult male 01day  (41) adult male 05day  (35) adult male 30day  (30) adult female 01day  (31) adult female 05day  (51) adult female 30day  (46) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    72 embryo 02-04hr    73 embryo 04-06hr    56 embryo 06-08hr    46 embryo 08-10hr    73 embryo 10-12hr    56 embryo 12-14hr    64 embryo 14-16hr    45 embryo 16-18hr    48 embryo 18-20hr    35 embryo 20-22hr    36 embryo 22-24hr    45 larva L1    6 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    16 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    13 white prepupae new    24 white prepupae 12hr    40 white prepupae 24hr    28 pupae 2d postWPP    34 pupae 3d postWPP    13 pupae 4d postWPP    23 adult male 01day    41 adult male 05day    35 adult male 30day    30 adult female 01day    31 adult female 05day    51 adult female 30day    46 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    72 embryo 02-04hr    73 embryo 04-06hr    56 embryo 06-08hr    46 embryo 08-10hr    73 embryo 10-12hr    56 embryo 12-14hr    64 embryo 14-16hr    45 embryo 16-18hr    48 embryo 18-20hr    35 embryo 20-22hr    36 embryo 22-24hr    45 larva L1    6 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    16 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    13 white prepupae new    24 white prepupae 12hr    40 white prepupae 24hr    28 pupae 2d postWPP    34 pupae 3d postWPP    13 pupae 4d postWPP    23 adult male 01day    41 adult male 05day    35 adult male 30day    30 adult female 01day    31 adult female 05day    51 adult female 30day    46 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    72 embryo 02-04hr    73 embryo 04-06hr    56 embryo 06-08hr    46 embryo 08-10hr    73 embryo 10-12hr    56 embryo 12-14hr    64 embryo 14-16hr    45 embryo 16-18hr    48 embryo 18-20hr    35 embryo 20-22hr    36 embryo 22-24hr    45 larva L1    6 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    16 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    13 white prepupae new    24 white prepupae 12hr    40 white prepupae 24hr    28 pupae 2d postWPP    34 pupae 3d postWPP    13 pupae 4d postWPP    23 adult male 01day    41 adult male 05day    35 adult male 30day    30 adult female 01day    31 adult female 05day    51 adult female 30day    46 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (72) embryo 02-04hr  (73) embryo 04-06hr  (56) embryo 06-08hr  (46) embryo 08-10hr  (73) embryo 10-12hr  (56) embryo 12-14hr  (64) embryo 14-16hr  (45) embryo 16-18hr  (48) embryo 18-20hr  (35) embryo 20-22hr  (36) embryo 22-24hr  (45) larva L1    6 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    16 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    13 white prepupae new    24 white prepupae 12hr  (40) white prepupae 24hr  28 pupae 2d postWPP  (34) pupae 3d postWPP    13 pupae 4d postWPP    23 adult male 01day  (41) adult male 05day  (35) adult male 30day  30 adult female 01day  31 adult female 05day  (51) adult female 30day  (46) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    72 embryo 02-04hr    73 embryo 04-06hr    56 embryo 06-08hr    46 embryo 08-10hr    73 embryo 10-12hr    56 embryo 12-14hr    64 embryo 14-16hr    45 embryo 16-18hr    48 embryo 18-20hr    35 embryo 20-22hr    36 embryo 22-24hr    45 larva L1    6 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    16 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    13 white prepupae new    24 white prepupae 12hr    40 white prepupae 24hr    28 pupae 2d postWPP    34 pupae 3d postWPP    13 pupae 4d postWPP    23 adult male 01day    41 adult male 05day    35 adult male 30day    30 adult female 01day    31 adult female 05day    51 adult female 30day    46 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    72 embryo 02-04hr    73 embryo 04-06hr    56 embryo 06-08hr    46 embryo 08-10hr    73 embryo 10-12hr    56 embryo 12-14hr    64 embryo 14-16hr    45 embryo 16-18hr    48 embryo 18-20hr    35 embryo 20-22hr    36 embryo 22-24hr    45 larva L1    6 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    16 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    13 white prepupae new    24 white prepupae 12hr    40 white prepupae 24hr    28 pupae 2d postWPP    34 pupae 3d postWPP    13 pupae 4d postWPP    23 adult male 01day    41 adult male 05day    35 adult male 30day    30 adult female 01day    31 adult female 05day    51 adult female 30day    46 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    9 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    1 embryonic S1    1 embryonic S3    32 leg disc CME L1    9 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    2 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    9 ovary fGS/OSS    27 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    9 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    1 embryonic S1    1 embryonic S3  (32) leg disc CME L1    9 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    2 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    9 ovary fGS/OSS  (27) ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    9 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    1 embryonic S1    1 embryonic S3    32 leg disc CME L1    9 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    2 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    9 ovary fGS/OSS    27 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    9 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    1 embryonic S1    1 embryonic S3    32 leg disc CME L1    9 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    2 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    9 ovary fGS/OSS    27 ovary OSC    1 ovary OSS    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    9 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    1 embryonic S1    1 embryonic S3    32 leg disc CME L1    9 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    2 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    9 ovary fGS/OSS    27 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    9 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    1 embryonic S1    1 embryonic S3  32 leg disc CME L1    9 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    2 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    9 ovary fGS/OSS  27 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    9 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    1 embryonic S1    1 embryonic S3    32 leg disc CME L1    9 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    2 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    9 ovary fGS/OSS    27 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    9 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    1 embryonic S1    1 embryonic S3    32 leg disc CME L1    9 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    2 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    9 ovary fGS/OSS    27 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    12 heat shock, 4-day adult    31 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    64 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    55 Ethanol 2.5% 3 hrs, larvae L3    48 Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    53 Caffeine 25 mg/ml 48 hrs, 4-day adult    21 Paraquat 5 mM 48 hrs, 4-day adult    65 Paraquat 10 mM 48 hrs, 4-day adult    39 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    12 heat shock, 4-day adult  (31) Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3  (27) Cadmium 50 mM 48 hrs, 4-day adult  26 Cadmium 100 mM 48 hrs, 4-day adult  (50) Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult  (64) Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult  (55) Ethanol 2.5% 3 hrs, larvae L3  (48) Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (53) Caffeine 25 mg/ml 48 hrs, 4-day adult    21 Paraquat 5 mM 48 hrs, 4-day adult  (65) Paraquat 10 mM 48 hrs, 4-day adult  (39) Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    12 heat shock, 4-day adult    31 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    64 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    55 Ethanol 2.5% 3 hrs, larvae L3    48 Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    53 Caffeine 25 mg/ml 48 hrs, 4-day adult    21 Paraquat 5 mM 48 hrs, 4-day adult    65 Paraquat 10 mM 48 hrs, 4-day adult    39 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    12 heat shock, 4-day adult    31 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    64 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    55 Ethanol 2.5% 3 hrs, larvae L3    48 Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    53 Caffeine 25 mg/ml 48 hrs, 4-day adult    21 Paraquat 5 mM 48 hrs, 4-day adult    65 Paraquat 10 mM 48 hrs, 4-day adult    39 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    12 heat shock, 4-day adult    31 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    64 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    55 Ethanol 2.5% 3 hrs, larvae L3    48 Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    53 Caffeine 25 mg/ml 48 hrs, 4-day adult    21 Paraquat 5 mM 48 hrs, 4-day adult    65 Paraquat 10 mM 48 hrs, 4-day adult    39 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    12 heat shock, 4-day adult  31 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3  27 Cadmium 50 mM 48 hrs, 4-day adult  26 Cadmium 100 mM 48 hrs, 4-day adult  (50) Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult  (64) Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult  (55) Ethanol 2.5% 3 hrs, larvae L3  (48) Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (53) Caffeine 25 mg/ml 48 hrs, 4-day adult    21 Paraquat 5 mM 48 hrs, 4-day adult  (65) Paraquat 10 mM 48 hrs, 4-day adult  (39) Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    12 heat shock, 4-day adult    31 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    64 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    55 Ethanol 2.5% 3 hrs, larvae L3    48 Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    53 Caffeine 25 mg/ml 48 hrs, 4-day adult    21 Paraquat 5 mM 48 hrs, 4-day adult    65 Paraquat 10 mM 48 hrs, 4-day adult    39 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    12 heat shock, 4-day adult    31 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    64 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    55 Ethanol 2.5% 3 hrs, larvae L3    48 Ethanol 5% 3 hrs, larvae L3    17 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    53 Caffeine 25 mg/ml 48 hrs, 4-day adult    21 Paraquat 5 mM 48 hrs, 4-day adult    65 Paraquat 10 mM 48 hrs, 4-day adult    39 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_01 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • RE56341 RH43215 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036428 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9238-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG9238 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG9238GD13796 Other Phenotypes Allele chemical resistant CG9238BG02516 CG9238EP3518 hyperactive | conditional CG9238BG02516 CG9238EP3518 Phenotype manifest in Allele
Classical Alleles ( 4 )
For All Classical Alleles Show
Allele of CG9238 Class Mutagen Stocks Known lesion CG9238BG02516 hypomorphic allele - molecular evidence P-element activity 1 -- CG9238e00418 piggyBac transposase 1 -- CG9238e03123 piggyBac transposase 1 -- CG9238EP3518 0 Yes
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG9238 Class Mutagen Stocks Known lesion CG9238GD13796 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG9238HMJ02062 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG9238KK108355 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG9238NIG.9238R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel6123 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD13796} NA P{KK108355} NA P{NIG.9238R} NA P{TRiP.HMJ02062} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}CG9238EP3518 NA P{EP}EP1040 NA miscellaneous insertions P{GT1}BG00037BG00037 NA P{GT1}BG00761BG00761 NA P{GT1}BG01084BG01084 NA P{GT1}CG9238BG02516 NA P{UAST-YFP.Rab19.T35N}04 NA PBac{RB}CG9238e00418 NA PBac{RB}CG9238e03123 NA
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
behavioral response to ethanol inferred from mutant phenotype (Kong et al., 2010)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
protein phosphatase 1 binding inferred from sequence or structural similarity with EMBL:U89924 (FlyBase, 1992-) protein phosphatase type 1 regulator activity inferred from sequence or structural similarity with NCBI_gi:4885559 (FlyBase, 1992-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG9238 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 64921 DroID - A comprehensive database of gene and protein interactions. • FBgn0036428 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39588
Orthologs
OrthoDB Orthologs (33) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6T4DFB Dipteran inclusive ortholog search EOG6PNXS0 Insect inclusive ortholog search EOG6GB63Q Arthropod inclusive ortholog search EOG6K0P4T Metazoa inclusive ortholog search EOG6SR8RS
Orthologs in Drosophila Species (EOG6T4DFB)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG9238     Drosophila simulans   Dsim\GD12617 Y   Drosophila sechellia   Dsec\GM24544 Y   Drosophila erecta   Dere\GG13723 Y   Drosophila yakuba   Dyak\GE20018 Y   Drosophila ananassae   Dana\GF25195 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA21633 Y   Drosophila persimilis   Dper\GL20988 Y   Drosophila willistoni   Dwil\GK20414 Y   Drosophila virilis   Dvir\GJ11686 Y   Drosophila mojavensis   Dmoj\GI13819 Y   Drosophila grimshawi   Dgri\GH16807 Y
Orthologs in non-Drosophila Dipterans (EOG6PNXS0)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL011191   Anopheles gambiae Malaria mosquito  Agam\AGAP001520   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ013140
Orthologs in non-Dipteran Insects (EOG6GB63Q)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC724295   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG002202   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH13039   Atta cephalotes Leafcutter ant  Acep\ACEP23032   Camponotus floridanus Florida carpenter ant  Cflo\CFLO11056   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL15412   Linepithema humile Argentine ant  Lhum\LH23137   Pogonomyrmex barbatus Red harvester ant  Pbar\PB22547   Solenopsis invicta Red fire ant  Sinv\SINV19100   Acyrthosiphon pisum Pea aphid  Apim\ACYPI001142   Bombyx mori Silkmoth  Bmor\BGIBMGA009594   Pediculus humanus Human body louse  Phum\PHUM239050   Tribolium castaneum Red flour beetle  Tcas\TC004080
Orthologs in non-Insect Arthropods (EOG6K0P4T)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\Gda   Ixodes scapularis Deer tick  Isca\ISCW022135
Orthologs in non-Arthropod Metazoa (EOG6SR8RS)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\H18N23.2   Danio rerio Zebrafish  Drer\ppp1r3ca   Xenopus tropicalis Western clawed frog  Xtro\ppp1r3c
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD12617 Drosophila sechellia Dsec\GM24544 Drosophila erecta Dere\GG13723 Drosophila yakuba Dyak\GE20018 Drosophila ananassae Dana\GF25195 Drosophila pseudoobscura pseudoobscura Dpse\GA21633 Drosophila persimilis Dper\GL20988 Drosophila willistoni Dwil\GK20414 Drosophila virilis Dvir\GJ11686 Drosophila mojavensis Dmoj\GI13819 Drosophila grimshawi Dgri\GH16807
Stocks & Reagents
Stocks Listed in FlyBase ( 7 )
Bloomington	12699 w1118; P{GT1}CG9238BG02516 42498 y1 v1; P{TRiP.HMJ02062}attP40
Harvard	- PBac{RB}CG9238e00418 - PBac{RB}CG9238e03123
VDRC	v100593 P{KK108355}VIE-260B v24149 w1118; P{GD13796}v24149 v24150 w1118; P{GD13796}v24150
Genomic Clones ( 2 )
	BACR07K20 BACR14E19 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 163 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE56341 RH43215
Other clones	MIP07493
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH13364 GH16328 GH20948 HL03872 LD01440 LD08205 LD09211 LD09554 LD13701 LD14576 LD16145 LD18380 LD20564 LD34541 LD34949 LD38203 RE04192 RE04484 RE07779 RE09896 RE15170 RE23584 RE32006 RE32387 RE35790 RE37747 RE44022 RE44660 RE45053 RE45233 RE46354 RE46847 RE48030 RE61405 RE61423 RE62553 RE66323 RE67170 RE68877 RE70885 RE72493 RE72664 RE72812 RE74080 RE74543 RH09403 RH10480 RH13193 RH14450 RH14665 RH18608 RH18629 RH19410 RH22285 RH25077 RH26579 RH27585 RH30340 RH30363 RH31384 RH33170 RH34555 RH34991 RH37451 RH40738 RH42056 RH43721 RH46366 RH50763 RH51478 RH54039 RH61058 RH61337 RH63334 RH63624 RH63733 RH68106 RH69415 RH71737
Other clones	913 11112 12146 18492 39451 44918 45255 45437 54962 61167 62824 67697 79639 105295 122258 122264 163101 178484 211212.3 214249.49 214351.56 281242 CK01.5D.F3 CK01.16D.E12 CK01.69B.H2 CK01.88C.H9 CK01.93B.C10 CK01.102B.H10 Dmel_dig_002354_0658_1654 Dmel_dig_010442_0628_0554 Dmel_neb_010259_0882_3555 Dmel_neb_013256_0655_2044 Dmel_neb_013480_0902_3399 Dmel_neb_013665_0591_3080 Dmel_neb_013722_0640_0914 Dmel_neb_015685_0833_0929 EC35040 EC38537 EC053807 EK007102 EK048908 EK065346 EK069631 EK086261 EK111153 EK112812 EK121738 EK130711 EK146905 EK152640 EK160661 EK161412 EK161429 EK164410 EK187130 EK187834 EK196237 EK209846 EK245553 EK283455 EK292125 EK306345 EP05528 EP11829 RM01023 RM01323 RM01423 RP001006622 RP001008068 RP001008559 RP001011755 RP001015685 RP001019202 RP001022184 RP001029587 RP001034829 RP001045067 RP001046477 RP001047162 RP001055682 UUGC1032
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0036428 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39588
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG9238 anon-WO0118547.400 (FlyBase, 1996-)
Additional comments	Source for merge of CG9238 anon-WO0118547.400 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	Area matching Drosophila EST AA264865. (Davies, 2001.3.15)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_140451 NM_168589 NM_001274913 RefSeq (Proteins) • NP_648708 NP_729979 NP_001261842 DDBJ / EMBL / GenBank • AA264865 AAF49732 AAF49733 AAL68352 AAM11414 AGB94535 AX094276 AY075545 AY095086 BH011519 BI369984 BI613945 CZ478306 CZ478307 CZ480890 Entrez Gene - A searchable database of RefSeq genes. • 39588 UniProtKB/TrEMBL • Q8SWT8 Q8SXW5 Q9VUF3
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Putative phosphatase regulatory subunit (IPR005036) Protein phosphatase 1, glycogen targeting subunit, Metazoa (IPR017434) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE56341 RH43215
Linkouts
	BioGRID - A database of protein and genetic interactions • 64921 DroID - A comprehensive database of gene and protein interactions. • FBgn0036428 DRSC - Results from RNAi screens. • FBgn0036428 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036428 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9238-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0036428 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39588 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39588 modMine - Data generated by the modENCODE project. • FBgn0036428
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	anon-WO0118547.400   CG9238 (Sambandan et al., 2006, Zhang et al., 2007, Mohammad et al., 2009, Keleman et al., 2009.8.5, Morozova et al., 2006, Kong et al., 2010, Girardot et al., 2004, Magwire et al., 2010, Chen et al., 2007, Ni et al., 2010.12.1, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
	FBgn0062040
References ( 28 )
Generate a list of	All references relating to this gene ( 28 )
List References by type	Research paper  ( 9 ) Supplementary material  ( 5 ) Personal communication to FlyBase  ( 7 ) FlyBase analysis  ( 2 ) Stock list  ( 1 ) Patent  ( 1 ) DNA/RNA sequence record  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...