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Gene Dmel\CG17839

General Information
Symbol	Dmel\CG17839	Species	D. melanogaster
Name		Annotation symbol	CG17839
Feature type	protein_coding_gene	FlyBase ID	FBgn0036454
Gene Model Status	Current	Stock availability	13 publicly available
Also Known As	CT39634
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	70F7-71A1	Sequence location	3L:14,798,352..14,875,324 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG17839 (FBgn0036454). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 14 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Domain of unknown function DB; Fibronectin, type III; Immunoglobulin; Immunoglobulin I-set; Immunoglobulin subtype; Immunoglobulin-like domain; Immunoglobulin-like fold. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 18-24 hour embryonic stages, during late larval stages, during late pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, adult hindgut, adult salivary gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1623767_at completely aligns to an exonic region of only a subset of 1 of the 2 FlyBase-annotated transcript isoforms of CG17839. Gene sequence location is 3L:14798352..14875324.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03	Alleles CG17839[MI07369]
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 70F7-71A1   Limits computationally determined from genome sequence between P{PZ}Mpcp00564 and P{PZ}l(3)rO220rO220
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG17839 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46 Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG17839-RB FBtr0075695  NM_206363   5875   1656 CG17839-RC FBtr0110825  NM_001043141   2234   587
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG17839-PB   FBpp0075445   178.5   1656   6.32     NP_996085   AAS65009 CG17839-PC   FBpp0110122   64.7   587   6.29     NP_001036606   ABI31253
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Domain of unknown function DB (IPR002602) Immunoglobulin subtype (IPR003599) Fibronectin, type III (IPR003961) Immunoglobulin-like domain (IPR007110) Immunoglobulin-like fold (IPR013783) Immunoglobulin (IPR013151) Immunoglobulin I-set (IPR013098)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA140987   AA141662   AA433204   AA438816   AA698870   AA699021   AA951592   AE014296 AAS65009   AE014296 ABI31253   AF217395   AI533420   AI546591   AW940262   AY060462   BG635268   BG638660   BI238312   BI357366   BI362401   BI367860   BI369607   BI374648   BI614368   BT003797   BT060446   BT060447   CO153318   CO153640   CO154439   CO155474   CO156338   CO186363   CO186972   CO188010   CO188086   CO189103   CO196537   CO196680   CO262314   CO263587   CO263612   CO264623   CO265893   CO266046   CO272019   CO272652   CO272848   CO273430   CO279571   CO281436   CO281503   CO283633   CO284048   CO285114   CO293169   CO294792   CO294835   CO297698   CO299338   CO299486   CO306085   CO307616   CO307977   CO309631   CO310032   CO313976   CO314382   CO316210   CO316945   CO318737   CO325750   CO325855   CO326142   CO326165   CO329055   CO330078   CO330495   CO339021   CZ484009   CZ490262   EC077250   EC087028   EC204394   EC222327   EC226908   EC229665   EC250193   EL884185   EV592376   EV594060   EV596362   EV597525   EV600693   FL502481   FL502730   FL502888   GR705838
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q7KUK9 Q0E8E6
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Wasbrough et al., 2010)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, adult hindgut, adult salivary gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    33.3 Larval Midgut    6.2 Larval Hindgut    39.4 Larval Malpighian Tubules    9.7 Larval Fat Body    11.5 Larval Salivary Gland    21.6 Larval Trachea    47.575 Larval Carcass    159.65 Adult Head    216.7 Adult Eye    142.175 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    146.7 Adult Crop    425 Adult Midgut    7.2 Adult Hindgut    166.1 Adult Malpighian Tubules    10 Adult Fat Body    23.9 Adult Salivary Gland    418.2 Adult Heart    25.975 Adult VirginFemale Spermatheca    24.2 Adult InseminatedFemale Spermatheca    25.9 Adult Ovary    5.6 Adult Testis    42.3 Adult Male Accessory Gland    8.4 Adult Carcass    233.9 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    33.3 Larval Midgut    6.2 Larval Hindgut    39.4 Larval Malpighian Tubules    9.7 Larval Fat Body    11.5 Larval Salivary Gland    21.6 Larval Trachea    47.575 Larval Carcass    159.65 Adult Head    216.7 Adult Eye    142.175 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    146.7 Adult Crop    425 Adult Midgut    7.2 Adult Hindgut    166.1 Adult Malpighian Tubules    10 Adult Fat Body    23.9 Adult Salivary Gland    418.2 Adult Heart    25.975 Adult VirginFemale Spermatheca    24.2 Adult InseminatedFemale Spermatheca    25.9 Adult Ovary    5.6 Adult Testis    42.3 Adult Male Accessory Gland    8.4 Adult Carcass    233.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    33.3 Larval Midgut    6.2 Larval Hindgut    39.4 Larval Malpighian Tubules    9.7 Larval Fat Body    11.5 Larval Salivary Gland    21.6 Larval Trachea    47.575 Larval Carcass    159.65 Adult Head    216.7 Adult Eye    142.175 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    146.7 Adult Crop    425 Adult Midgut    7.2 Adult Hindgut    166.1 Adult Malpighian Tubules    10 Adult Fat Body    23.9 Adult Salivary Gland    418.2 Adult Heart    25.975 Adult VirginFemale Spermatheca    24.2 Adult InseminatedFemale Spermatheca    25.9 Adult Ovary    5.6 Adult Testis    42.3 Adult Male Accessory Gland    8.4 Adult Carcass    233.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    33.3 Larval Midgut    6.2 Larval Hindgut    39.4 Larval Malpighian Tubules    9.7 Larval Fat Body    11.5 Larval Salivary Gland    21.6 Larval Trachea    47.575 Larval Carcass    159.65 Adult Head    216.7 Adult Eye    142.175 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    146.7 Adult Crop    425 Adult Midgut    7.2 Adult Hindgut    166.1 Adult Malpighian Tubules    10 Adult Fat Body    23.9 Adult Salivary Gland    418.2 Adult Heart    25.975 Adult VirginFemale Spermatheca    24.2 Adult InseminatedFemale Spermatheca    25.9 Adult Ovary    5.6 Adult Testis    42.3 Adult Male Accessory Gland    8.4 Adult Carcass    233.9 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    33.3 Larval Midgut    6.2 Larval Hindgut    39.4 Larval Malpighian Tubules    9.7 Larval Fat Body    11.5 Larval Salivary Gland    21.6 Larval Trachea    47.575 Larval Carcass    159.65 Adult Head    216.7 Adult Eye    142.175 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    146.7 Adult Crop    425 Adult Midgut    7.2 Adult Hindgut    166.1 Adult Malpighian Tubules    10 Adult Fat Body    23.9 Adult Salivary Gland    418.2 Adult Heart    25.975 Adult VirginFemale Spermatheca    24.2 Adult InseminatedFemale Spermatheca    25.9 Adult Ovary    5.6 Adult Testis    42.3 Adult Male Accessory Gland    8.4 Adult Carcass    233.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    33.3 Larval Midgut    6.2 Larval Hindgut    39.4 Larval Malpighian Tubules    9.7 Larval Fat Body    11.5 Larval Salivary Gland    21.6 Larval Trachea    47.575 Larval Carcass    159.65 Adult Head    216.7 Adult Eye    142.175 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    146.7 Adult Crop    425 Adult Midgut    7.2 Adult Hindgut    166.1 Adult Malpighian Tubules    10 Adult Fat Body    23.9 Adult Salivary Gland    418.2 Adult Heart    25.975 Adult VirginFemale Spermatheca    24.2 Adult InseminatedFemale Spermatheca    25.9 Adult Ovary    5.6 Adult Testis    42.3 Adult Male Accessory Gland    8.4 Adult Carcass    233.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    33.3 Larval Midgut    6.2 Larval Hindgut    39.4 Larval Malpighian Tubules    9.7 Larval Fat Body    11.5 Larval Salivary Gland    21.6 Larval Trachea    47.575 Larval Carcass    159.65 Adult Head    216.7 Adult Eye    142.175 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    146.7 Adult Crop    425 Adult Midgut    7.2 Adult Hindgut    166.1 Adult Malpighian Tubules    10 Adult Fat Body    23.9 Adult Salivary Gland    418.2 Adult Heart    25.975 Adult VirginFemale Spermatheca    24.2 Adult InseminatedFemale Spermatheca    25.9 Adult Ovary    5.6 Adult Testis    42.3 Adult Male Accessory Gland    8.4 Adult Carcass    233.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    33.3 Larval Midgut    6.2 Larval Hindgut    39.4 Larval Malpighian Tubules    9.7 Larval Fat Body    11.5 Larval Salivary Gland    21.6 Larval Trachea    47.575 Larval Carcass    159.65 Adult Head    216.7 Adult Eye    142.175 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    146.7 Adult Crop    425 Adult Midgut    7.2 Adult Hindgut    166.1 Adult Malpighian Tubules    10 Adult Fat Body    23.9 Adult Salivary Gland    418.2 Adult Heart    25.975 Adult VirginFemale Spermatheca    24.2 Adult InseminatedFemale Spermatheca    25.9 Adult Ovary    5.6 Adult Testis    42.3 Adult Male Accessory Gland    8.4 Adult Carcass    233.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    216.7   NA  Eye    142.175   NA  Brain    164.6   33.3  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    146.7   NA  Crop    425   6.2  Midgut    7.2   39.4  Hindgut    166.1   9.7  Malpighian Tubules    no informative data   no informative data  Fat Body    23.9   no informative data  Salivary Gland    418.2   NA  Heart    25.975   47.575  Trachea    NA   NA  VirginFemale Spermatheca    24.2   NA  InseminatedFemale Spermatheca    25.9   NA  Ovary    5.6   NA  Testis    42.3   NA  Male Accessory Gland    8.4   159.65  Carcass    233.9 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    14 central nervous system, pupae P8    35 head, virgin 1-day female    71 head, virgin 4-day female    51 head, virgin 20-day female    26 head, mated 1-day female    68 head, mated 4-day female    47 head, mated 20-day female    25 head, mated 1-day male    78 head, mated 4-day male    80 head, mated 20-day male    58 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    8 carcass, larvae L3 wandering    45 carcass, 1-day adult    48 carcass, 4-day adult    40 carcass, 20-day adult    24 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    14 central nervous system, pupae P8  (35) head, virgin 1-day female  (71) head, virgin 4-day female  (51) head, virgin 20-day female  26 head, mated 1-day female  (68) head, mated 4-day female  (47) head, mated 20-day female    25 head, mated 1-day male  (78) head, mated 4-day male  (80) head, mated 20-day male  (58) salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    8 carcass, larvae L3 wandering  (45) carcass, 1-day adult  (48) carcass, 4-day adult  (40) carcass, 20-day adult    24 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    14 central nervous system, pupae P8    35 head, virgin 1-day female    71 head, virgin 4-day female    51 head, virgin 20-day female    26 head, mated 1-day female    68 head, mated 4-day female    47 head, mated 20-day female    25 head, mated 1-day male    78 head, mated 4-day male    80 head, mated 20-day male    58 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    8 carcass, larvae L3 wandering    45 carcass, 1-day adult    48 carcass, 4-day adult    40 carcass, 20-day adult    24 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    14 central nervous system, pupae P8    35 head, virgin 1-day female    71 head, virgin 4-day female    51 head, virgin 20-day female    26 head, mated 1-day female    68 head, mated 4-day female    47 head, mated 20-day female    25 head, mated 1-day male    78 head, mated 4-day male    80 head, mated 20-day male    58 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    8 carcass, larvae L3 wandering    45 carcass, 1-day adult    48 carcass, 4-day adult    40 carcass, 20-day adult    24 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    14 central nervous system, pupae P8    35 head, virgin 1-day female    71 head, virgin 4-day female    51 head, virgin 20-day female    26 head, mated 1-day female    68 head, mated 4-day female    47 head, mated 20-day female    25 head, mated 1-day male    78 head, mated 4-day male    80 head, mated 20-day male    58 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    8 carcass, larvae L3 wandering    45 carcass, 1-day adult    48 carcass, 4-day adult    40 carcass, 20-day adult    24 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    14 central nervous system, pupae P8  (35) head, virgin 1-day female  (71) head, virgin 4-day female  (51) head, virgin 20-day female  26 head, mated 1-day female  (68) head, mated 4-day female  (47) head, mated 20-day female    25 head, mated 1-day male  (78) head, mated 4-day male  (80) head, mated 20-day male  (58) salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    8 carcass, larvae L3 wandering  (45) carcass, 1-day adult  (48) carcass, 4-day adult  (40) carcass, 20-day adult    24 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    14 central nervous system, pupae P8    35 head, virgin 1-day female    71 head, virgin 4-day female    51 head, virgin 20-day female    26 head, mated 1-day female    68 head, mated 4-day female    47 head, mated 20-day female    25 head, mated 1-day male    78 head, mated 4-day male    80 head, mated 20-day male    58 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    8 carcass, larvae L3 wandering    45 carcass, 1-day adult    48 carcass, 4-day adult    40 carcass, 20-day adult    24 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    14 central nervous system, pupae P8    35 head, virgin 1-day female    71 head, virgin 4-day female    51 head, virgin 20-day female    26 head, mated 1-day female    68 head, mated 4-day female    47 head, mated 20-day female    25 head, mated 1-day male    78 head, mated 4-day male    80 head, mated 20-day male    58 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    8 carcass, larvae L3 wandering    45 carcass, 1-day adult    48 carcass, 4-day adult    40 carcass, 20-day adult    24 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 18-24 hour embryonic stages, during late larval stages, during late pupal stages, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    7 embryo 18-20hr    31 embryo 20-22hr    25 embryo 22-24hr    25 larva L1    12 larva L2    3 larva L3 12hr old    8 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    21 white prepupae new    3 white prepupae 12hr    7 white prepupae 24hr    9 pupae 2d postWPP    10 pupae 3d postWPP    38 pupae 4d postWPP    27 adult male 01day    41 adult male 05day    40 adult male 30day    31 adult female 01day    27 adult female 05day    8 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    7 embryo 18-20hr  (31) embryo 20-22hr    25 embryo 22-24hr    25 larva L1    12 larva L2    3 larva L3 12hr old    8 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6  (49) larva L3 puffstage 7-9    21 white prepupae new    3 white prepupae 12hr    7 white prepupae 24hr    9 pupae 2d postWPP    10 pupae 3d postWPP  (38) pupae 4d postWPP  (27) adult male 01day  (41) adult male 05day  (40) adult male 30day  (31) adult female 01day  (27) adult female 05day    8 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    7 embryo 18-20hr    31 embryo 20-22hr    25 embryo 22-24hr    25 larva L1    12 larva L2    3 larva L3 12hr old    8 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    21 white prepupae new    3 white prepupae 12hr    7 white prepupae 24hr    9 pupae 2d postWPP    10 pupae 3d postWPP    38 pupae 4d postWPP    27 adult male 01day    41 adult male 05day    40 adult male 30day    31 adult female 01day    27 adult female 05day    8 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    7 embryo 18-20hr    31 embryo 20-22hr    25 embryo 22-24hr    25 larva L1    12 larva L2    3 larva L3 12hr old    8 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    21 white prepupae new    3 white prepupae 12hr    7 white prepupae 24hr    9 pupae 2d postWPP    10 pupae 3d postWPP    38 pupae 4d postWPP    27 adult male 01day    41 adult male 05day    40 adult male 30day    31 adult female 01day    27 adult female 05day    8 adult female 30day    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    7 embryo 18-20hr    31 embryo 20-22hr    25 embryo 22-24hr    25 larva L1    12 larva L2    3 larva L3 12hr old    8 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    21 white prepupae new    3 white prepupae 12hr    7 white prepupae 24hr    9 pupae 2d postWPP    10 pupae 3d postWPP    38 pupae 4d postWPP    27 adult male 01day    41 adult male 05day    40 adult male 30day    31 adult female 01day    27 adult female 05day    8 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    7 embryo 18-20hr  31 embryo 20-22hr    25 embryo 22-24hr    25 larva L1    12 larva L2    3 larva L3 12hr old    8 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6  (49) larva L3 puffstage 7-9    21 white prepupae new    3 white prepupae 12hr    7 white prepupae 24hr    9 pupae 2d postWPP    10 pupae 3d postWPP  (38) pupae 4d postWPP  27 adult male 01day  (41) adult male 05day  (40) adult male 30day  31 adult female 01day  27 adult female 05day    8 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    7 embryo 18-20hr    31 embryo 20-22hr    25 embryo 22-24hr    25 larva L1    12 larva L2    3 larva L3 12hr old    8 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    21 white prepupae new    3 white prepupae 12hr    7 white prepupae 24hr    9 pupae 2d postWPP    10 pupae 3d postWPP    38 pupae 4d postWPP    27 adult male 01day    41 adult male 05day    40 adult male 30day    31 adult female 01day    27 adult female 05day    8 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    7 embryo 18-20hr    31 embryo 20-22hr    25 embryo 22-24hr    25 larva L1    12 larva L2    3 larva L3 12hr old    8 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    49 larva L3 puffstage 7-9    21 white prepupae new    3 white prepupae 12hr    7 white prepupae 24hr    9 pupae 2d postWPP    10 pupae 3d postWPP    38 pupae 4d postWPP    27 adult male 01day    41 adult male 05day    40 adult male 30day    31 adult female 01day    27 adult female 05day    8 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    0 embryonic S1    0 embryonic S3    3 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    2 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    0 embryonic S1    0 embryonic S3    3 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    2 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    0 embryonic S1    0 embryonic S3    3 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    2 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    0 embryonic S1    0 embryonic S3    3 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    2 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    0 embryonic S1    0 embryonic S3    3 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    2 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    0 embryonic S1    0 embryonic S3    3 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    2 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    0 embryonic S1    0 embryonic S3    3 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    2 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    0 embryonic S1    0 embryonic S3    3 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    2 wing disc ML-DmD16-c3    2 wing disc ML-DmD21    0 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    9 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    34 Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    9 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult  (34) Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    9 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    34 Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    9 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    34 Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    9 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    34 Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    9 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult  (34) Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    9 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    34 Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    9 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    7 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    34 Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_10 mE1_20_mRNA_expression_cluster_14
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036454 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG17839-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG17839PL00504 viable, with Scer\GAL4pnr-MD237 CG17839GD95 CG17839GD2591 CG17839GD14436 Sterility Allele fertile CG17839PL00504 Phenotype manifest in Allele
Classical Alleles ( 10 )
For All Classical Alleles Show
Allele of CG17839 Class Mutagen Stocks Known lesion CG17839f01544 piggyBac transposase 1 -- CG17839f07523 piggyBac transposase 1 -- CG17839MB00682 1 -- CG17839MB08271 1 -- CG17839MI01077 1 -- CG17839MI07369 1 -- CG17839CPTI000794 piggyBac transposase 0 Yes CG17839f06806 0 -- CG17839MI07248 0 -- CG17839PL00504 P-element activity 0 --
Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG17839 Class Mutagen Stocks Known lesion CG17839GD14436 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG17839GD2591 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG17839GD95 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG17839KK105048 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG17839NIG.17839R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD95} NA P{GD2591} NA P{GD14436} NA P{KK105048} NA P{NIG.17839R} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}CG17839MI01077 NA Mi{MIC}CG17839MI07248 NA Mi{MIC}CG17839MI07369 NA PBac{602.P.SVS-1}CG17839CPTI000794 NA PBac{WH}CG17839f01544 NA PBac{WH}CG17839f06806 NA PBac{WH}CG17839f07523 NA insertion of enhancer trap binary system Mi{ET1}CG17839MB00682 No Mi{ET1}CG17839MB08271 No PBac{GAL4D,EYFP}CG17839PL00504 No
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG17839 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0036454
Orthologs
OrthoDB Orthologs (24) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6DBTZZ Dipteran inclusive ortholog search EOG6S1TG4 Insect inclusive ortholog search EOG62BW4D Arthropod inclusive ortholog search EOG6XGXDZ Metazoa inclusive ortholog search EOG6V7B8B
Orthologs in Drosophila Species (EOG6DBTZZ)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG17839     Drosophila simulans   Dsim\GD14505 Y   Drosophila sechellia   Dsec\GM25484 Y   Drosophila erecta   Dere\GG15700 Y   Drosophila yakuba   Dyak\GE22031 Y   Drosophila ananassae   Dana\GF24620 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA14693 Y   Drosophila persimilis   Dper\GL24598 Y   Drosophila willistoni   Dwil\GK10540     Drosophila virilis   Dvir\GJ11596 Y   Drosophila mojavensis   Dmoj\GI11342 Y   Drosophila grimshawi   Dgri\GH14630 Y
Orthologs in non-Drosophila Dipterans (EOG6S1TG4)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL003133   Anopheles gambiae Malaria mosquito  Agam\AGAP011355   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ010213
Orthologs in non-Dipteran Insects (EOG62BW4D)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Acyrthosiphon pisum Pea aphid  Apim\ACYPI003412   Acyrthosiphon pisum Pea aphid  Apim\ACYPI51677   Bombyx mori Silkmoth  Bmor\BGIBMGA007388   Pediculus humanus Human body louse  Phum\PHUM268900   Tribolium castaneum Red flour beetle  Tcas\TC005994
Orthologs in non-Insect Arthropods (EOG6XGXDZ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\hsp60   Ixodes scapularis Deer tick  Isca\ISCW020557
Orthologs in non-Arthropod Metazoa (EOG6V7B8B)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\T04A11.3   Caenorhabditis elegans Nematode  Cele\C25G4.10
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD14505 Drosophila sechellia Dsec\GM25484 Drosophila erecta Dere\GG15700 Drosophila yakuba Dyak\GE22031 Drosophila ananassae Dana\GF24620 Drosophila pseudoobscura pseudoobscura Dpse\GA14693 Drosophila persimilis Dper\GL24598 Drosophila virilis Dvir\GJ11596 Drosophila mojavensis Dmoj\GI11342 Drosophila grimshawi Dgri\GH14630
Stocks & Reagents
Stocks Listed in FlyBase ( 13 )
Bloomington	25664 w1118; Mi{ET1}CG17839MB08271 43901 y1 w*; Mi{MIC}CG17839MI07369 22869 y1 w67c23; Mi{ET1}CG17839MB00682
Harvard	- PBac{WH}CG17839f01544 - PBac{WH}CG17839f07523
VDRC	v100149 P{KK105048}VIE-260B v4322 w1118; P{GD95}v4322 v4323 w1118; P{GD95}v4323 v3108 w1118; P{GD2591}v3108 v3109 w1118; P{GD2591}v3109 v36314 w1118; P{GD14436}v36314 v36315 w1118; P{GD14436}v36315/CyO
	More stocks available...
Genomic Clones ( 1 )
	BACR22J22 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 87 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT31792 SD04061
Other clones	MIP03545 MIP03645
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH07425 HL05834 HL07322 LD13173 RE34727 RE43833 RE46947 RE53722 RE55841 RE62290 RH43728 SD05223 SD08031
Other clones	42323 78496 125834 162034 173045 AA433204 CK01.44C.B4 CK01062 CK02182 Dmel_neb_012750_0610_0657 Dmel_neb_013956_0948_2778 Dmel_neb_015264_0923_1799 Dmel_neb_015701_0900_0302 Dmel_neb_016103_0668_1878 DMG4-chr3L.25.007.pred.a EK005443 EK007347 EK019028 EK025046 EK035859 EK037238 EK043028 EK085026 EK089019 EK089053 EK105507 EK107937 EK108537 EK110927 EK135403 EK139745 EK144403 EK144764 EK157152 EK157323 EK163910 EK165122 EK168241 EK170349 EK175124 EK175542 EK197363 EK201960 EK207658 EK207816 EK218649 EK220304 EK234550 EK236006 EK250233 EK255109 EK256324 EK263947 EK266343 EK273711 EK291943 EK294505 EK295414 EN01732 EN02506 EN04132 EN06125 EN07854 EP00633 EP02805 EP03317 EP03344 IP15533 LD32207 MB6-CG17839.a
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0036454 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39616
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_206363 NM_001043141 RefSeq (Proteins) • NP_996085 NP_001036606 DDBJ / EMBL / GenBank • AA699021 AAS65009 ABI31253 BG635268 CZ484009 CZ490262 Entrez Gene - A searchable database of RefSeq genes. • 39616 UniProtKB/TrEMBL • Q0E8E6 Q7KUK9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Domain of unknown function DB (IPR002602) Immunoglobulin subtype (IPR003599) Fibronectin, type III (IPR003961) Immunoglobulin-like domain (IPR007110) Immunoglobulin-like fold (IPR013783) Immunoglobulin (IPR013151) Immunoglobulin I-set (IPR013098)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0036454 DRSC - Results from RNAi screens. • FBgn0036454 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036454 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG17839-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0036454 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39616 modMine - Data generated by the modENCODE project. • FBgn0036454
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	CG17839 (Mack et al., 2006, Knowles-Barley et al., 2010, Keleman et al., 2009.8.5, Wasbrough et al., 2010, Japanese National Institute of Genetics, 2012.5.21) CT39634 (Ceriani et al., 2002, Hynes and Zhao, 2000)
Name Synonym
Secondary FlyBase IDs
References ( 28 )
Generate a list of	All references relating to this gene ( 28 )
List References by type	Research paper  ( 5 ) Supplementary material  ( 6 ) Personal communication to FlyBase  ( 13 ) FlyBase analysis  ( 2 ) Stock list  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 1 )
	Baycin-Hizal et al., 2011, J. Proteome Res. 10(6): 2777--2784 GlycoFly: A Database of Drosophila N-linked Glycoproteins Identified Using SPEG-MS Techniques. [FBrf0213834] Show all research papers ...