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Gene Dmel\Prp31

General Information
Symbol	Dmel\Prp31	Species	D. melanogaster
Name		Annotation symbol	CG6876
Feature type	protein_coding_gene	FlyBase ID	FBgn0036487
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	71B6-71B6	Sequence location	3L:15,152,183..15,154,238 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\Prp31 (CG6876, FBgn0036487). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: neurogenesis. 3 alleles are reported. The phenotypes of these alleles are annotated with: rhabdomere; eye; mesothoracic tergum; pigment cell. It has one annotated transcript and one annotated polypeptide. Protein features are: NOSIC; Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain; Prp31 C-terminal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult hindgut, larval/adult Malpighian tubules, larval/adult salivary gland, larval trachea, adult female reproductive system, adult testis. Comments on Affy2 ProbeSet: ProbeSet 1633113_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Prp31. Gene sequence location is 3L:15152183..15154238.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01	Sequence features BKN22756 HFA10735
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 71B6-71B6   Limits computationally determined from genome sequence between P{lacW}cp309s2172&P{lacW}l(3)j2A2j2A2 and P{EP}Tfb2EP572
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Prp31 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Prp31-RA FBtr0075642  NM_140499   1879   501
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Prp31-PA   FBpp0075395   55.5   501   7.11     NP_648756   AAF49655
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (IPR002687) NOSIC (IPR012976) Prp31 C-terminal (IPR019175)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA438833   AA695940   AA735242   AA735815   AA941230   AE014296 AAF49655   AI124318   AI297754   AI404604   AI455595   AI514713   AI517845   AW943551   AY051928 AAK93352   BF496294   BF498383   BF501970   BI238733   BI239816   BI356353   BI364176   CK605423   CK605424   CO317613   CO317615   CO344482   EC079379   EC223859   EC227042   EC227044   EC253903   GH788646   GH842593   GH891258   GH894994   GH905015
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VUM1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0036487    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0036487 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0036487 expression level Developmental Stage   Expression Level embryo 00-02hr    3514 embryo 02-04hr    5333 embryo 04-06hr    5096 embryo 06-08hr    4138 embryo 08-10hr    3929 embryo 10-12hr    3324 embryo 12-14hr    2377 embryo 14-16hr    1654 embryo 16-18hr    1270 embryo 18-20hr    1047 embryo 20-22hr    1023 embryo 22-24hr    1067 larva L1    1235 larva L2    1275 larva L3 12hr old    1001 larva L3 puffstage 1-2    1048 larva L3 puffstage 3-6    1325 larva L3 puffstage 7-9    1472 white prepupae new    1618 white prepupae 12hr    1695 white prepupae 24hr    2322 pupae 2d postWPP    1691 pupae 3d postWPP    1038 pupae 4d postWPP    752 adult male 01day    1031 adult male 05day    1339 adult male 30day    1192 adult female 01day    1376 adult female 05day    2287 adult female 30day    2276 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3514) embryo 02-04hr  (5333) embryo 04-06hr  (5096) embryo 06-08hr  (4138) embryo 08-10hr  (3929) embryo 10-12hr  (3324) embryo 12-14hr  (2377) embryo 14-16hr  (1654) embryo 16-18hr  (1270) embryo 18-20hr  (1047) embryo 20-22hr  (1023) embryo 22-24hr  (1067) larva L1  (1235) larva L2  (1275) larva L3 12hr old  (1001) larva L3 puffstage 1-2  (1048) larva L3 puffstage 3-6  (1325) larva L3 puffstage 7-9  (1472) white prepupae new  (1618) white prepupae 12hr  (1695) white prepupae 24hr  (2322) pupae 2d postWPP  (1691) pupae 3d postWPP  (1038) pupae 4d postWPP  (752) adult male 01day  (1031) adult male 05day  (1339) adult male 30day  (1192) adult female 01day  (1376) adult female 05day  (2287) adult female 30day  (2276) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3514) embryo 02-04hr  (5333) embryo 04-06hr  (5096) embryo 06-08hr  (4138) embryo 08-10hr  (3929) embryo 10-12hr  (3324) embryo 12-14hr  (2377) embryo 14-16hr  (1654) embryo 16-18hr    1270 embryo 18-20hr    1047 embryo 20-22hr    1023 embryo 22-24hr    1067 larva L1    1235 larva L2    1275 larva L3 12hr old    1001 larva L3 puffstage 1-2    1048 larva L3 puffstage 3-6    1325 larva L3 puffstage 7-9  1472 white prepupae new  (1618) white prepupae 12hr  (1695) white prepupae 24hr  (2322) pupae 2d postWPP  (1691) pupae 3d postWPP    1038 pupae 4d postWPP    752 adult male 01day    1031 adult male 05day    1339 adult male 30day    1192 adult female 01day    1376 adult female 05day  (2287) adult female 30day  (2276) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3514 embryo 02-04hr    5333 embryo 04-06hr    5096 embryo 06-08hr    4138 embryo 08-10hr    3929 embryo 10-12hr    3324 embryo 12-14hr    2377 embryo 14-16hr    1654 embryo 16-18hr    1270 embryo 18-20hr    1047 embryo 20-22hr    1023 embryo 22-24hr    1067 larva L1    1235 larva L2    1275 larva L3 12hr old    1001 larva L3 puffstage 1-2    1048 larva L3 puffstage 3-6    1325 larva L3 puffstage 7-9    1472 white prepupae new    1618 white prepupae 12hr    1695 white prepupae 24hr    2322 pupae 2d postWPP    1691 pupae 3d postWPP    1038 pupae 4d postWPP    752 adult male 01day    1031 adult male 05day    1339 adult male 30day    1192 adult female 01day    1376 adult female 05day    2287 adult female 30day    2276 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3514 embryo 02-04hr    5333 embryo 04-06hr    5096 embryo 06-08hr    4138 embryo 08-10hr    3929 embryo 10-12hr    3324 embryo 12-14hr    2377 embryo 14-16hr    1654 embryo 16-18hr    1270 embryo 18-20hr    1047 embryo 20-22hr    1023 embryo 22-24hr    1067 larva L1    1235 larva L2    1275 larva L3 12hr old    1001 larva L3 puffstage 1-2    1048 larva L3 puffstage 3-6    1325 larva L3 puffstage 7-9    1472 white prepupae new    1618 white prepupae 12hr    1695 white prepupae 24hr    2322 pupae 2d postWPP    1691 pupae 3d postWPP    1038 pupae 4d postWPP    752 adult male 01day    1031 adult male 05day    1339 adult male 30day    1192 adult female 01day    1376 adult female 05day    2287 adult female 30day    2276 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0036487 expression level Developmental Stage   Expression Level embryo 00-02hr    3514 embryo 02-04hr    5333 embryo 04-06hr    5096 embryo 06-08hr    4138 embryo 08-10hr    3929 embryo 10-12hr    3324 embryo 12-14hr    2377 embryo 14-16hr    1654 embryo 16-18hr    1270 embryo 18-20hr    1047 embryo 20-22hr    1023 embryo 22-24hr    1067 larva L1    1235 larva L2    1275 larva L3 12hr old    1001 larva L3 puffstage 1-2    1048 larva L3 puffstage 3-6    1325 larva L3 puffstage 7-9    1472 white prepupae new    1618 white prepupae 12hr    1695 white prepupae 24hr    2322 pupae 2d postWPP    1691 pupae 3d postWPP    1038 pupae 4d postWPP    752 adult male 01day    1031 adult male 05day    1339 adult male 30day    1192 adult female 01day    1376 adult female 05day    2287 adult female 30day    2276 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3514) embryo 02-04hr  (5333) embryo 04-06hr  (5096) embryo 06-08hr  (4138) embryo 08-10hr  (3929) embryo 10-12hr  (3324) embryo 12-14hr  (2377) embryo 14-16hr  (1654) embryo 16-18hr  (1270) embryo 18-20hr  (1047) embryo 20-22hr  (1023) embryo 22-24hr  (1067) larva L1  (1235) larva L2  (1275) larva L3 12hr old  (1001) larva L3 puffstage 1-2  (1048) larva L3 puffstage 3-6  (1325) larva L3 puffstage 7-9  (1472) white prepupae new  (1618) white prepupae 12hr  (1695) white prepupae 24hr  (2322) pupae 2d postWPP  (1691) pupae 3d postWPP  (1038) pupae 4d postWPP  (752) adult male 01day  (1031) adult male 05day  (1339) adult male 30day  (1192) adult female 01day  (1376) adult female 05day  (2287) adult female 30day  (2276) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3514) embryo 02-04hr  (5333) embryo 04-06hr  (5096) embryo 06-08hr  (4138) embryo 08-10hr  (3929) embryo 10-12hr  (3324) embryo 12-14hr  2377 embryo 14-16hr  1654 embryo 16-18hr    1270 embryo 18-20hr    1047 embryo 20-22hr    1023 embryo 22-24hr    1067 larva L1    1235 larva L2    1275 larva L3 12hr old    1001 larva L3 puffstage 1-2    1048 larva L3 puffstage 3-6    1325 larva L3 puffstage 7-9  1472 white prepupae new  1618 white prepupae 12hr  1695 white prepupae 24hr  2322 pupae 2d postWPP  1691 pupae 3d postWPP    1038 pupae 4d postWPP    752 adult male 01day    1031 adult male 05day    1339 adult male 30day    1192 adult female 01day    1376 adult female 05day  2287 adult female 30day  2276 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3514 embryo 02-04hr    5333 embryo 04-06hr    5096 embryo 06-08hr    4138 embryo 08-10hr    3929 embryo 10-12hr    3324 embryo 12-14hr    2377 embryo 14-16hr    1654 embryo 16-18hr    1270 embryo 18-20hr    1047 embryo 20-22hr    1023 embryo 22-24hr    1067 larva L1    1235 larva L2    1275 larva L3 12hr old    1001 larva L3 puffstage 1-2    1048 larva L3 puffstage 3-6    1325 larva L3 puffstage 7-9    1472 white prepupae new    1618 white prepupae 12hr    1695 white prepupae 24hr    2322 pupae 2d postWPP    1691 pupae 3d postWPP    1038 pupae 4d postWPP    752 adult male 01day    1031 adult male 05day    1339 adult male 30day    1192 adult female 01day    1376 adult female 05day    2287 adult female 30day    2276 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3514 embryo 02-04hr    5333 embryo 04-06hr    5096 embryo 06-08hr    4138 embryo 08-10hr    3929 embryo 10-12hr    3324 embryo 12-14hr    2377 embryo 14-16hr    1654 embryo 16-18hr    1270 embryo 18-20hr    1047 embryo 20-22hr    1023 embryo 22-24hr    1067 larva L1    1235 larva L2    1275 larva L3 12hr old    1001 larva L3 puffstage 1-2    1048 larva L3 puffstage 3-6    1325 larva L3 puffstage 7-9    1472 white prepupae new    1618 white prepupae 12hr    1695 white prepupae 24hr    2322 pupae 2d postWPP    1691 pupae 3d postWPP    1038 pupae 4d postWPP    752 adult male 01day    1031 adult male 05day    1339 adult male 30day    1192 adult female 01day    1376 adult female 05day    2287 adult female 30day    2276 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0036487    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0036487 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult hindgut, larval/adult Malpighian tubules, larval/adult salivary gland, larval trachea, adult female reproductive system, adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0036487 expression level Tissue   Expression Level Larval Central Nervous System    269.35 Larval Midgut    50.7 Larval Hindgut    102.1 Larval Malpighian Tubules    110.7 Larval Fat Body    92.1 Larval Salivary Gland    159.7 Larval Trachea    139.15 Larval Carcass    94.65 Adult Head    102.8 Adult Eye    107.95 Adult Brain    150.8 Adult Thoracic-Abdominal Ganglion    146.4 Adult Crop    120.7 Adult Midgut    82.2 Adult Hindgut    131.3 Adult Malpighian Tubules    120.5 Adult Fat Body    66.7 Adult Salivary Gland    123.7 Adult Heart    79.8 Adult VirginFemale Spermatheca    106.2 Adult InseminatedFemale Spermatheca    111.8 Adult Ovary    169.8 Adult Testis    118.4 Adult Male Accessory Gland    79.5 Adult Carcass    65 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    269.35 Larval Midgut    50.7 Larval Hindgut    102.1 Larval Malpighian Tubules    110.7 Larval Fat Body    92.1 Larval Salivary Gland    159.7 Larval Trachea    139.15 Larval Carcass    94.65 Adult Head    102.8 Adult Eye    107.95 Adult Brain    150.8 Adult Thoracic-Abdominal Ganglion    146.4 Adult Crop    120.7 Adult Midgut    82.2 Adult Hindgut    131.3 Adult Malpighian Tubules    120.5 Adult Fat Body    66.7 Adult Salivary Gland    123.7 Adult Heart    79.8 Adult VirginFemale Spermatheca    106.2 Adult InseminatedFemale Spermatheca    111.8 Adult Ovary    169.8 Adult Testis    118.4 Adult Male Accessory Gland    79.5 Adult Carcass    65 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    269.35 Larval Midgut    50.7 Larval Hindgut    102.1 Larval Malpighian Tubules    110.7 Larval Fat Body    92.1 Larval Salivary Gland    159.7 Larval Trachea    139.15 Larval Carcass    94.65 Adult Head    102.8 Adult Eye    107.95 Adult Brain    150.8 Adult Thoracic-Abdominal Ganglion    146.4 Adult Crop    120.7 Adult Midgut    82.2 Adult Hindgut    131.3 Adult Malpighian Tubules    120.5 Adult Fat Body    66.7 Adult Salivary Gland    123.7 Adult Heart    79.8 Adult VirginFemale Spermatheca    106.2 Adult InseminatedFemale Spermatheca    111.8 Adult Ovary    169.8 Adult Testis    118.4 Adult Male Accessory Gland    79.5 Adult Carcass    65 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    269.35 Larval Midgut    50.7 Larval Hindgut    102.1 Larval Malpighian Tubules    110.7 Larval Fat Body    92.1 Larval Salivary Gland    159.7 Larval Trachea    139.15 Larval Carcass    94.65 Adult Head    102.8 Adult Eye    107.95 Adult Brain    150.8 Adult Thoracic-Abdominal Ganglion    146.4 Adult Crop    120.7 Adult Midgut    82.2 Adult Hindgut    131.3 Adult Malpighian Tubules    120.5 Adult Fat Body    66.7 Adult Salivary Gland    123.7 Adult Heart    79.8 Adult VirginFemale Spermatheca    106.2 Adult InseminatedFemale Spermatheca    111.8 Adult Ovary    169.8 Adult Testis    118.4 Adult Male Accessory Gland    79.5 Adult Carcass    65 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0036487 expression level Tissue   Expression Level Larval Central Nervous System    269.35 Larval Midgut    50.7 Larval Hindgut    102.1 Larval Malpighian Tubules    110.7 Larval Fat Body    92.1 Larval Salivary Gland    159.7 Larval Trachea    139.15 Larval Carcass    94.65 Adult Head    102.8 Adult Eye    107.95 Adult Brain    150.8 Adult Thoracic-Abdominal Ganglion    146.4 Adult Crop    120.7 Adult Midgut    82.2 Adult Hindgut    131.3 Adult Malpighian Tubules    120.5 Adult Fat Body    66.7 Adult Salivary Gland    123.7 Adult Heart    79.8 Adult VirginFemale Spermatheca    106.2 Adult InseminatedFemale Spermatheca    111.8 Adult Ovary    169.8 Adult Testis    118.4 Adult Male Accessory Gland    79.5 Adult Carcass    65 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    269.35 Larval Midgut    50.7 Larval Hindgut    102.1 Larval Malpighian Tubules    110.7 Larval Fat Body    92.1 Larval Salivary Gland    159.7 Larval Trachea    139.15 Larval Carcass    94.65 Adult Head    102.8 Adult Eye    107.95 Adult Brain    150.8 Adult Thoracic-Abdominal Ganglion    146.4 Adult Crop    120.7 Adult Midgut    82.2 Adult Hindgut    131.3 Adult Malpighian Tubules    120.5 Adult Fat Body    66.7 Adult Salivary Gland    123.7 Adult Heart    79.8 Adult VirginFemale Spermatheca    106.2 Adult InseminatedFemale Spermatheca    111.8 Adult Ovary    169.8 Adult Testis    118.4 Adult Male Accessory Gland    79.5 Adult Carcass    65 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    269.35 Larval Midgut    50.7 Larval Hindgut    102.1 Larval Malpighian Tubules    110.7 Larval Fat Body    92.1 Larval Salivary Gland    159.7 Larval Trachea    139.15 Larval Carcass    94.65 Adult Head    102.8 Adult Eye    107.95 Adult Brain    150.8 Adult Thoracic-Abdominal Ganglion    146.4 Adult Crop    120.7 Adult Midgut    82.2 Adult Hindgut    131.3 Adult Malpighian Tubules    120.5 Adult Fat Body    66.7 Adult Salivary Gland    123.7 Adult Heart    79.8 Adult VirginFemale Spermatheca    106.2 Adult InseminatedFemale Spermatheca    111.8 Adult Ovary    169.8 Adult Testis    118.4 Adult Male Accessory Gland    79.5 Adult Carcass    65 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    269.35 Larval Midgut    50.7 Larval Hindgut    102.1 Larval Malpighian Tubules    110.7 Larval Fat Body    92.1 Larval Salivary Gland    159.7 Larval Trachea    139.15 Larval Carcass    94.65 Adult Head    102.8 Adult Eye    107.95 Adult Brain    150.8 Adult Thoracic-Abdominal Ganglion    146.4 Adult Crop    120.7 Adult Midgut    82.2 Adult Hindgut    131.3 Adult Malpighian Tubules    120.5 Adult Fat Body    66.7 Adult Salivary Gland    123.7 Adult Heart    79.8 Adult VirginFemale Spermatheca    106.2 Adult InseminatedFemale Spermatheca    111.8 Adult Ovary    169.8 Adult Testis    118.4 Adult Male Accessory Gland    79.5 Adult Carcass    65 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    102.8   NA  Eye    107.95   NA  Brain    150.8   269.35  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    146.4   NA  Crop    120.7   50.7  Midgut    82.2   102.1  Hindgut    131.3   110.7  Malpighian Tubules    120.5   92.1  Fat Body    66.7   159.7  Salivary Gland    123.7   NA  Heart    79.8   139.15  Trachea    NA   NA  VirginFemale Spermatheca    106.2   NA  InseminatedFemale Spermatheca    111.8   NA  Ovary    169.8   NA  Testis    118.4   NA  Male Accessory Gland    79.5   94.65  Carcass    65 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_17
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036487 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6876-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL41407 Prp31GD12063 semi-lethal, with Scer\GAL4pnr-MD237 Prp31GD12063 Other Phenotypes Allele neuroanatomy defective | larval stage, with Scer\GAL41407 Prp31GD12063 visible, with Scer\GAL4ey.PU Prp31NIG.6876R visible, with Scer\GAL4pnr-MD237 Prp31GD12063 Phenotype manifest in Allele embryonic/larval neuroblast | larval stage, with Scer\GAL41407 Prp31GD12063 eye, with Scer\GAL4ey.PU Prp31NIG.6876R ganglion mother cell | larval stage, with Scer\GAL41407 Prp31GD12063 mesothoracic tergum, with Scer\GAL4pnr-MD237 Prp31GD12063 pigment cell, with Scer\GAL4ey.PU Prp31NIG.6876R rhabdomere, with Scer\GAL4ey.PU Prp31NIG.6876R
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Prp31 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Prp31 Class Mutagen Stocks Known lesion Prp31GD12063 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Prp31KK101175 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Prp31NIG.6876R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel6262 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data characterization construct P{NIG.6876R} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component
CV term Evidence References
precatalytic spliceosome inferred from direct assay (Herold et al., 2009)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
nuclear mRNA splicing, via spliceosome inferred by curator from GO:0071011 (Herold et al., 2009) inferred from sequence or structural similarity with Saccharomyces PRP31 AND inferred from sequence or structural similarity with NCBI:CAB43677 (Mount and Salz, 2000) inferred from sequence or structural similarity with UniProtKB:P49704 (FlyBase, 1992-)
Cellular Component
CV term Evidence References
spliceosomal complex inferred from sequence or structural similarity with Saccharomyces PRP31 AND inferred from sequence or structural similarity with NCBI:CAB43677 (Mount and Salz, 2000) inferred from sequence or structural similarity with UniProtKB:P49704 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Prp31 allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0036487 DroID - A comprehensive database of gene and protein interactions. • FBgn0036487 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39655
Orthologs
Genome-wide drosophilid orthologs	Dana\GF23690 Dere\GG15883 Dgri\GH14529 Dmoj\GI13100 Dper\GL24782 Dpse\GA19924 Dsec\GM25514 Dsim\GD14529 Dvir\GJ13847 Dwil\GK20402 Dyak\GE22227
Curated drosophilid orthologs	Dpse\GA19924
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AGAP012142-PA Anopheles gambiae (mosquito) XP_394383.1 Apis mellifera (honey bee) XP_001951872.1 Acyrthosiphon pisum (pea aphid) At1g60170.1 Arabidopsis thaliana (wall cress) 20133 Batrachochytrium dendrobatidis (chytrid fungus) 118990 Branchiostoma floridae (lancelet) 272222 Branchiostoma floridae (lancelet) XP_001897262.1 Brugia malayi (roundworm nematode) BGIBMGA006896-PA Bombyx mori (silk worm) ENSBTAP00000010198 Bos taurus (bovine) CAL0003106 Candida albicans (a form of yeast) CBP02629 Caenorhabditis briggsae (nematode) CE24126 Caenorhabditis elegans (worm) ENSCAFP00000003947 Canis familiaris (dog) CAGL0G03025g Candida glabrata (haploid yeast) ENSCINP00000005742 Ciona intestinalis (sea squirt) JA14480 Caenorhabditis japonica (nematode) cn02026 Cryptococcus neoformans (yeast-like fungus) cgd4_150 Cryptosporidium parvum (protozoan parasite) CPIJ002179 Culex pipens (mosquito) ENSCPOP00000010350 Cavia porcellus (guinea pig) 126153 Chlamidomonas reinhardtii (green alga) RP13264 Caenorhabditis remanei (nematode) ENSCSAVP00000018508 Ciona savignyi (sedentary tunicate) 177631 Capitella spl (polychaete worm) DEHA2C07744g Debaryomyces Hansenii (yeast) 337041 Daphnia pulex (daphnia) ENSDARP00000039844 Danio rerio (zebra fish) ENSECAP00000018249 Equus caballus (horse) XP_654529 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000015175 Gymnopilus aculeatus (mushroom) 185344 Hypsipyla robusta (cedar shoot borer) ENSP00000324122 Homo sapiens (human) ISCW013140-PA Ixodes scapularis (deer tick) KLLA0D14883g Kluyveromyces lactis (yeast) 222708 Lottia gigantea (owl limpet) LmjF33.0130 Leishmania major (virus) 35569 Monocosta brevicollis (choanoflagellate) ENSMODP00000005044 Monodelphis domestica (gray opossum) ENSMMUP00000029349 Macaca mulatta (rhesus monkey) ENSMUSP00000008517 Mus musculus (house mouse) 193135 Nematostella vectensis (starlet anemone) XP_001600101.1 Nasonia vitripennis (wasp) ENSOANP00000014928 Ornithorynchus anatinus (platypus) ENSORLP00000014036 Oryzias latipes (japanese killifish) LOC_Os04g46890.1 Oryza sativa (asian rice) 8167 Ostreococcus tauri (green alga) PFD0450c Plasmodium falciparum (protozoal parasite) PHUM010919-PA Pediculus humanus (human body louse) PP03338 Pristionchus pacificus (nematode) 59230 Physcomitrella patens (moss) ENSPPYP00000011616 Pongo pygmaeus (orangutan) 71399 Phytophthora ramorum (sudden oak death pathogen) 108771 Phytophthora sojae (root rot pathogen) 552316 Populus trichocarpa (black cottonwood) ENSPTRP00000019663 Pan troglodytes (chimpanzee) PVX_000790 Plasmodium vivax (protozoal parasite) ENSRNOP00000018683 Rattus norvegicus (norway rat) 4761827 Sorghum bicolor (sorghum) YGR091W Saccharomyces cerevisiae (budding yeast) Smp_163030 Schistosoma mansoni (trematode parasite) SPBC119.13c Schizosaccharomyces pombe (fission yeast) XP_793603.2 Strongylocentrotus purpuratus (purple sea urchin) 20768 Trichoplax adhaerens (metazoa) TA14045 Theileria annulata (apicomplexan parasite) XP_969081.1 Tribolium castaneum (red flour beetle) Tc00.1047053503583.40 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053504625.10 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000010908 Tetraodon nigroviridis (green spotted pufferfish) TP02_0595 Theileria parva (parasitic protozoan) 6052 Thalassiosira pseudonana (marine diatom) ENSTRUP00000040291 Takifugu rubripes (pufferfish Takifugu) 3812.m02442 Tetrahymena thermophila (ciliate protozoa) 87835.m00282 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000023852 Xenopus tropicalis (frog) YALI0B13706g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB17016 NV18159 LH12731 ISCW013140 FBgn0239454 FBgn0222399 FBgn0201066 FBgn0186211 FBgn0180371 JGI_V11_337041 FBgn0079920 FBgn0162370 FBgn0135857 FBgn0122005 FBgn0108119 FBgn0100684 CPIJ002179 BGIBMGA006897 BGIBMGA006896 ACYPI002320 GB18617 AGAP012142 AAEL017543 PHUM556490 GLEAN_10639
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
VDRC	v103721 P{KK101175}VIE-260B v35131 w1118; P{GD12063}v35131
Genomic Clones ( 2 )
	BACR03G06 BACR18G16 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 33 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD41209
Other clones	DPiM_LD41209
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT10058 AT12768 AT17568 GH24376 GM04809 GM09912 LD01663 LD13193 LD25258 LD35116 LD42929 LP12126 RE35253 RE36411 RE42474 RE49239
Other clones	67131 164271 164352 214381.55 281766 AI124318 EK268621 EK268624 EP19346 RP003095727 RP003522974 RP003562651 RP003585606 RP003638534 UT01925
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0036487 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39655
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Prp31 CG6876 (Ray et al., 2010)
Source for database merge of	Source for merge of: CG6876 anon-EST:Liang-2.38 (Bayraktaroglu, 2000.11.2)
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_140499 RefSeq (Proteins) • NP_648756 DDBJ / EMBL / GenBank • AAF49655 AAK93352 AI124318 AI514713 AW943551 AY051928 Entrez Gene - A searchable database of RefSeq genes. • 39655 UniProtKB/TrEMBL • Q9VUM1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (IPR002687) NOSIC (IPR012976) Prp31 C-terminal (IPR019175)
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0036487 DroID - A comprehensive database of gene and protein interactions. • FBgn0036487 DRSC - Results from RNAi screens. • FBgn0036487 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036487 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6876-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0036487 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39655 InParanoid A subset of ortholog calls from InParanoid. • AGAP012142-PA Anopheles gambiae (mosquito) XP_394383.1 Apis mellifera (honey bee) XP_001951872.1 Acyrthosiphon pisum (pea aphid) At1g60170.1 Arabidopsis thaliana (wall cress) 20133 Batrachochytrium dendrobatidis (chytrid fungus) 118990 Branchiostoma floridae (lancelet) 272222 Branchiostoma floridae (lancelet) XP_001897262.1 Brugia malayi (roundworm nematode) BGIBMGA006896-PA Bombyx mori (silk worm) ENSBTAP00000010198 Bos taurus (bovine) CAL0003106 Candida albicans (a form of yeast) CBP02629 Caenorhabditis briggsae (nematode) CE24126 Caenorhabditis elegans (worm) ENSCAFP00000003947 Canis familiaris (dog) CAGL0G03025g Candida glabrata (haploid yeast) ENSCINP00000005742 Ciona intestinalis (sea squirt) JA14480 Caenorhabditis japonica (nematode) cn02026 Cryptococcus neoformans (yeast-like fungus) cgd4_150 Cryptosporidium parvum (protozoan parasite) CPIJ002179 Culex pipens (mosquito) ENSCPOP00000010350 Cavia porcellus (guinea pig) 126153 Chlamidomonas reinhardtii (green alga) RP13264 Caenorhabditis remanei (nematode) ENSCSAVP00000018508 Ciona savignyi (sedentary tunicate) 177631 Capitella spl (polychaete worm) DEHA2C07744g Debaryomyces Hansenii (yeast) 337041 Daphnia pulex (daphnia) ENSDARP00000039844 Danio rerio (zebra fish) ENSECAP00000018249 Equus caballus (horse) XP_654529 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000015175 Gymnopilus aculeatus (mushroom) 185344 Hypsipyla robusta (cedar shoot borer) ENSP00000324122 Homo sapiens (human) ISCW013140-PA Ixodes scapularis (deer tick) KLLA0D14883g Kluyveromyces lactis (yeast) 222708 Lottia gigantea (owl limpet) LmjF33.0130 Leishmania major (virus) 35569 Monocosta brevicollis (choanoflagellate) ENSMODP00000005044 Monodelphis domestica (gray opossum) ENSMMUP00000029349 Macaca mulatta (rhesus monkey) ENSMUSP00000008517 Mus musculus (house mouse) 193135 Nematostella vectensis (starlet anemone) XP_001600101.1 Nasonia vitripennis (wasp) ENSOANP00000014928 Ornithorynchus anatinus (platypus) ENSORLP00000014036 Oryzias latipes (japanese killifish) LOC_Os04g46890.1 Oryza sativa (asian rice) 8167 Ostreococcus tauri (green alga) PFD0450c Plasmodium falciparum (protozoal parasite) PHUM010919-PA Pediculus humanus (human body louse) PP03338 Pristionchus pacificus (nematode) 59230 Physcomitrella patens (moss) ENSPPYP00000011616 Pongo pygmaeus (orangutan) 71399 Phytophthora ramorum (sudden oak death pathogen) 108771 Phytophthora sojae (root rot pathogen) 552316 Populus trichocarpa (black cottonwood) ENSPTRP00000019663 Pan troglodytes (chimpanzee) PVX_000790 Plasmodium vivax (protozoal parasite) ENSRNOP00000018683 Rattus norvegicus (norway rat) 4761827 Sorghum bicolor (sorghum) YGR091W Saccharomyces cerevisiae (budding yeast) Smp_163030 Schistosoma mansoni (trematode parasite) SPBC119.13c Schizosaccharomyces pombe (fission yeast) XP_793603.2 Strongylocentrotus purpuratus (purple sea urchin) 20768 Trichoplax adhaerens (metazoa) TA14045 Theileria annulata (apicomplexan parasite) XP_969081.1 Tribolium castaneum (red flour beetle) Tc00.1047053503583.40 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053504625.10 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000010908 Tetraodon nigroviridis (green spotted pufferfish) TP02_0595 Theileria parva (parasitic protozoan) 6052 Thalassiosira pseudonana (marine diatom) ENSTRUP00000040291 Takifugu rubripes (pufferfish Takifugu) 3812.m02442 Tetrahymena thermophila (ciliate protozoa) 87835.m00282 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000023852 Xenopus tropicalis (frog) YALI0B13706g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39655 modMine - Data generated by the modENCODE project. • FBgn0036487 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB17016 NV18159 LH12731 ISCW013140 FBgn0239454 FBgn0222399 FBgn0201066 FBgn0186211 FBgn0180371 JGI_V11_337041 FBgn0079920 FBgn0162370 FBgn0135857 FBgn0122005 FBgn0108119 FBgn0100684 CPIJ002179 BGIBMGA006897 BGIBMGA006896 ACYPI002320 GB18617 AGAP012142 AAEL017543 PHUM556490 GLEAN_10639
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	anon-EST:Liang-2.38   CG6876 (Ray et al., 2010, Somma et al., 2008, Keleman et al., 2009.8.5, Herold et al., 2009) clone 2.38 (Liang and Biggin, 1998) FBgn0036487 (Li et al., 2003) Prp31 (Ray et al., 2010)
Name Synonym
Secondary FlyBase IDs
	FBgn0025957
References ( 17 )
Research paper	Ray et al., 2010, Protein Cell 1(3): 267--274 The splicing factor Prp31 is essential for photoreceptor development in Drosophila. [FBrf0210617] Herold et al., 2009, Mol. Cell. Biol. 29(1): 281--301 Conservation of the protein composition and electron microscopy structure of Drosophila melanogaster and human spliceosomal complexes. [FBrf0207172] Somma et al., 2008, PLoS Genet. 4(7): e1000126 Identification of Drosophila mitotic genes by combining co-expression analysis and RNA interference. [FBrf0206064] Li et al., 2003, Genome Res. 13(9): 2178--2189 OrthoMCL: identification of ortholog groups for eukaryotic genomes. [FBrf0167690] Orian et al., 2003, Genes Dev. 17(9): 1101--1114 Genomic binding by the Drosophila Myc, Max, Mad/Mnt transcription factor network. [FBrf0158942] Mount and Salz, 2000, J. Cell Biol. 150(2): F37--F43 Pre-messenger RNA processing factors in the Drosophila genome. [FBrf0129982] Liang and Biggin, 1998, Development 125(22): 4471--4482 Eve and ftz regulate a wide array of genes in blastoderm embryos: the selector homeoproteins directly or indirectly regulate most genes in Drosophila. [FBrf0105875]
Supplementary material	Neumüller et al., 2011, Cell Stem Cell 8(5): Supplemental Table S1. [FBrf0214431] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Bayraktaroglu, 2000.11.2, Current list of possibly CG-able known genes. Current list of possibly CG-able known genes. [FBrf0131225]
FlyBase analysis	FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]