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Gene Dmel\CG7739

General Information
Symbol	Dmel\CG7739	Species	D. melanogaster
Name		Annotation symbol	CG7739
Feature type	protein_coding_gene	FlyBase ID	FBgn0036509
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	71E1-71E1	Sequence location	3L:15,553,826..15,556,165 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG7739 (FBgn0036509). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 6 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: T-cell immunomodulatory protein. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult central nervous system, larval Malpighian tubules, adult salivary gland, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, larval salivary gland, larval trachea, adult female reproductive system, adult testis, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1637601_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG7739. Gene sequence location is 3L:15553826..15556165.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 71E1-71E1   Limits computationally determined from genome sequence between P{lacW}cp309s2172&P{lacW}l(3)j2A2j2A2 and P{EP}Tfb2EP572
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG7739 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.45 Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG7739-RA FBtr0075596  NM_140519   2281   596
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG7739-PA   FBpp0075349   67.4   596   5.69     NP_648776   AAF49618
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • T-cell immunomodulatory protein (IPR024881)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA202155   AA539419   AA697379   AE014296 AAF49618   AI405042   AI543669   AY075477 AAL68289   BF487314   BI163765   BI169486   BI172819   BI173580   BI214673   BI214928   BI237623   BI238380   BI239374   BI239898   BI240265   BI240782   BI241608   BI355999   BI361384   BI363797   BI365361   BI368413   BI485220   CL943604   CO182880   CO183305   CO288366   CO322841   EC081549   EC246522
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VUQ7
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult central nervous system, larval Malpighian tubules, adult salivary gland, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, larval salivary gland, larval trachea, adult female reproductive system, adult testis, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    346.775 Larval Midgut    404.8 Larval Hindgut    349.1 Larval Malpighian Tubules    635 Larval Fat Body    358.5 Larval Salivary Gland    346.2 Larval Trachea    228.85 Larval Carcass    225.05 Adult Head    450.3 Adult Eye    603 Adult Brain    640.9 Adult Thoracic-Abdominal Ganglion    641.4 Adult Crop    309 Adult Midgut    340.6 Adult Hindgut    352.1 Adult Malpighian Tubules    270.9 Adult Fat Body    320.2 Adult Salivary Gland    642.4 Adult Heart    348.175 Adult VirginFemale Spermatheca    329.1 Adult InseminatedFemale Spermatheca    311.8 Adult Ovary    159.1 Adult Testis    168.5 Adult Male Accessory Gland    549.7 Adult Carcass    294.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    346.775 Larval Midgut    404.8 Larval Hindgut    349.1 Larval Malpighian Tubules  (635) Larval Fat Body    358.5 Larval Salivary Gland    346.2 Larval Trachea    228.85 Larval Carcass    225.05 Adult Head    450.3 Adult Eye  (603) Adult Brain  (640.9) Adult Thoracic-Abdominal Ganglion  (641.4) Adult Crop    309 Adult Midgut    340.6 Adult Hindgut    352.1 Adult Malpighian Tubules    270.9 Adult Fat Body    320.2 Adult Salivary Gland  (642.4) Adult Heart    348.175 Adult VirginFemale Spermatheca    329.1 Adult InseminatedFemale Spermatheca    311.8 Adult Ovary    159.1 Adult Testis    168.5 Adult Male Accessory Gland  (549.7) Adult Carcass    294.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    346.775 Larval Midgut    404.8 Larval Hindgut    349.1 Larval Malpighian Tubules    635 Larval Fat Body    358.5 Larval Salivary Gland    346.2 Larval Trachea    228.85 Larval Carcass    225.05 Adult Head    450.3 Adult Eye    603 Adult Brain    640.9 Adult Thoracic-Abdominal Ganglion    641.4 Adult Crop    309 Adult Midgut    340.6 Adult Hindgut    352.1 Adult Malpighian Tubules    270.9 Adult Fat Body    320.2 Adult Salivary Gland    642.4 Adult Heart    348.175 Adult VirginFemale Spermatheca    329.1 Adult InseminatedFemale Spermatheca    311.8 Adult Ovary    159.1 Adult Testis    168.5 Adult Male Accessory Gland    549.7 Adult Carcass    294.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    346.775 Larval Midgut    404.8 Larval Hindgut    349.1 Larval Malpighian Tubules    635 Larval Fat Body    358.5 Larval Salivary Gland    346.2 Larval Trachea    228.85 Larval Carcass    225.05 Adult Head    450.3 Adult Eye    603 Adult Brain    640.9 Adult Thoracic-Abdominal Ganglion    641.4 Adult Crop    309 Adult Midgut    340.6 Adult Hindgut    352.1 Adult Malpighian Tubules    270.9 Adult Fat Body    320.2 Adult Salivary Gland    642.4 Adult Heart    348.175 Adult VirginFemale Spermatheca    329.1 Adult InseminatedFemale Spermatheca    311.8 Adult Ovary    159.1 Adult Testis    168.5 Adult Male Accessory Gland    549.7 Adult Carcass    294.1 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    346.775 Larval Midgut    404.8 Larval Hindgut    349.1 Larval Malpighian Tubules    635 Larval Fat Body    358.5 Larval Salivary Gland    346.2 Larval Trachea    228.85 Larval Carcass    225.05 Adult Head    450.3 Adult Eye    603 Adult Brain    640.9 Adult Thoracic-Abdominal Ganglion    641.4 Adult Crop    309 Adult Midgut    340.6 Adult Hindgut    352.1 Adult Malpighian Tubules    270.9 Adult Fat Body    320.2 Adult Salivary Gland    642.4 Adult Heart    348.175 Adult VirginFemale Spermatheca    329.1 Adult InseminatedFemale Spermatheca    311.8 Adult Ovary    159.1 Adult Testis    168.5 Adult Male Accessory Gland    549.7 Adult Carcass    294.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    346.775 Larval Midgut    404.8 Larval Hindgut    349.1 Larval Malpighian Tubules  635 Larval Fat Body    358.5 Larval Salivary Gland    346.2 Larval Trachea    228.85 Larval Carcass    225.05 Adult Head    450.3 Adult Eye  603 Adult Brain  640.9 Adult Thoracic-Abdominal Ganglion  641.4 Adult Crop    309 Adult Midgut    340.6 Adult Hindgut    352.1 Adult Malpighian Tubules    270.9 Adult Fat Body    320.2 Adult Salivary Gland  642.4 Adult Heart    348.175 Adult VirginFemale Spermatheca    329.1 Adult InseminatedFemale Spermatheca    311.8 Adult Ovary    159.1 Adult Testis    168.5 Adult Male Accessory Gland  549.7 Adult Carcass    294.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    346.775 Larval Midgut    404.8 Larval Hindgut    349.1 Larval Malpighian Tubules    635 Larval Fat Body    358.5 Larval Salivary Gland    346.2 Larval Trachea    228.85 Larval Carcass    225.05 Adult Head    450.3 Adult Eye    603 Adult Brain    640.9 Adult Thoracic-Abdominal Ganglion    641.4 Adult Crop    309 Adult Midgut    340.6 Adult Hindgut    352.1 Adult Malpighian Tubules    270.9 Adult Fat Body    320.2 Adult Salivary Gland    642.4 Adult Heart    348.175 Adult VirginFemale Spermatheca    329.1 Adult InseminatedFemale Spermatheca    311.8 Adult Ovary    159.1 Adult Testis    168.5 Adult Male Accessory Gland    549.7 Adult Carcass    294.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    346.775 Larval Midgut    404.8 Larval Hindgut    349.1 Larval Malpighian Tubules    635 Larval Fat Body    358.5 Larval Salivary Gland    346.2 Larval Trachea    228.85 Larval Carcass    225.05 Adult Head    450.3 Adult Eye    603 Adult Brain    640.9 Adult Thoracic-Abdominal Ganglion    641.4 Adult Crop    309 Adult Midgut    340.6 Adult Hindgut    352.1 Adult Malpighian Tubules    270.9 Adult Fat Body    320.2 Adult Salivary Gland    642.4 Adult Heart    348.175 Adult VirginFemale Spermatheca    329.1 Adult InseminatedFemale Spermatheca    311.8 Adult Ovary    159.1 Adult Testis    168.5 Adult Male Accessory Gland    549.7 Adult Carcass    294.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    450.3   NA  Eye    603   NA  Brain    640.9   346.775  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    641.4   NA  Crop    309   404.8  Midgut    340.6   349.1  Hindgut    352.1   635  Malpighian Tubules    270.9   358.5  Fat Body    320.2   346.2  Salivary Gland    642.4   NA  Heart    348.175   228.85  Trachea    NA   NA  VirginFemale Spermatheca    329.1   NA  InseminatedFemale Spermatheca    311.8   NA  Ovary    159.1   NA  Testis    168.5   NA  Male Accessory Gland    549.7   225.05  Carcass    294.1 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    14 central nervous system, pupae P8    16 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    12 head, mated 4-day female    15 head, mated 20-day female    16 head, mated 1-day male    23 head, mated 4-day male    26 head, mated 20-day male    30 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    34 digestive system, larvae L3 wandering    33 digestive system, 1-day adult    12 digestive system, 4-day adult    11 digestive system, 20-day adult    14 fat body, larvae L3 wandering    3 fat body, white prepupae    14 fat body, pupae P8    10 carcass, larvae L3 wandering    15 carcass, 1-day adult    8 carcass, 4-day adult    9 carcass, 20-day adult    10 ovary, virgin 4-day female    14 ovary, mated 4-day female    9 testis, mated 4-day male    11 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    14 central nervous system, pupae P8    16 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    12 head, mated 4-day female    15 head, mated 20-day female    16 head, mated 1-day male    23 head, mated 4-day male  26 head, mated 20-day male  (30) salivary gland, larvae L3 wandering    12 salivary gland, white prepupae  (34) digestive system, larvae L3 wandering  (33) digestive system, 1-day adult    12 digestive system, 4-day adult    11 digestive system, 20-day adult    14 fat body, larvae L3 wandering    3 fat body, white prepupae    14 fat body, pupae P8    10 carcass, larvae L3 wandering    15 carcass, 1-day adult    8 carcass, 4-day adult    9 carcass, 20-day adult    10 ovary, virgin 4-day female    14 ovary, mated 4-day female    9 testis, mated 4-day male    11 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    14 central nervous system, pupae P8    16 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    12 head, mated 4-day female    15 head, mated 20-day female    16 head, mated 1-day male    23 head, mated 4-day male    26 head, mated 20-day male    30 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    34 digestive system, larvae L3 wandering    33 digestive system, 1-day adult    12 digestive system, 4-day adult    11 digestive system, 20-day adult    14 fat body, larvae L3 wandering    3 fat body, white prepupae    14 fat body, pupae P8    10 carcass, larvae L3 wandering    15 carcass, 1-day adult    8 carcass, 4-day adult    9 carcass, 20-day adult    10 ovary, virgin 4-day female    14 ovary, mated 4-day female    9 testis, mated 4-day male    11 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    14 central nervous system, pupae P8    16 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    12 head, mated 4-day female    15 head, mated 20-day female    16 head, mated 1-day male    23 head, mated 4-day male    26 head, mated 20-day male    30 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    34 digestive system, larvae L3 wandering    33 digestive system, 1-day adult    12 digestive system, 4-day adult    11 digestive system, 20-day adult    14 fat body, larvae L3 wandering    3 fat body, white prepupae    14 fat body, pupae P8    10 carcass, larvae L3 wandering    15 carcass, 1-day adult    8 carcass, 4-day adult    9 carcass, 20-day adult    10 ovary, virgin 4-day female    14 ovary, mated 4-day female    9 testis, mated 4-day male    11 accessory gland, mated 4-day male    9 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    14 central nervous system, pupae P8    16 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    12 head, mated 4-day female    15 head, mated 20-day female    16 head, mated 1-day male    23 head, mated 4-day male    26 head, mated 20-day male    30 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    34 digestive system, larvae L3 wandering    33 digestive system, 1-day adult    12 digestive system, 4-day adult    11 digestive system, 20-day adult    14 fat body, larvae L3 wandering    3 fat body, white prepupae    14 fat body, pupae P8    10 carcass, larvae L3 wandering    15 carcass, 1-day adult    8 carcass, 4-day adult    9 carcass, 20-day adult    10 ovary, virgin 4-day female    14 ovary, mated 4-day female    9 testis, mated 4-day male    11 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    14 central nervous system, pupae P8    16 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    12 head, mated 4-day female    15 head, mated 20-day female    16 head, mated 1-day male    23 head, mated 4-day male  26 head, mated 20-day male  30 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae  (34) digestive system, larvae L3 wandering  (33) digestive system, 1-day adult    12 digestive system, 4-day adult    11 digestive system, 20-day adult    14 fat body, larvae L3 wandering    3 fat body, white prepupae    14 fat body, pupae P8    10 carcass, larvae L3 wandering    15 carcass, 1-day adult    8 carcass, 4-day adult    9 carcass, 20-day adult    10 ovary, virgin 4-day female    14 ovary, mated 4-day female    9 testis, mated 4-day male    11 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    14 central nervous system, pupae P8    16 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    12 head, mated 4-day female    15 head, mated 20-day female    16 head, mated 1-day male    23 head, mated 4-day male    26 head, mated 20-day male    30 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    34 digestive system, larvae L3 wandering    33 digestive system, 1-day adult    12 digestive system, 4-day adult    11 digestive system, 20-day adult    14 fat body, larvae L3 wandering    3 fat body, white prepupae    14 fat body, pupae P8    10 carcass, larvae L3 wandering    15 carcass, 1-day adult    8 carcass, 4-day adult    9 carcass, 20-day adult    10 ovary, virgin 4-day female    14 ovary, mated 4-day female    9 testis, mated 4-day male    11 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    14 central nervous system, pupae P8    16 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    12 head, mated 4-day female    15 head, mated 20-day female    16 head, mated 1-day male    23 head, mated 4-day male    26 head, mated 20-day male    30 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    34 digestive system, larvae L3 wandering    33 digestive system, 1-day adult    12 digestive system, 4-day adult    11 digestive system, 20-day adult    14 fat body, larvae L3 wandering    3 fat body, white prepupae    14 fat body, pupae P8    10 carcass, larvae L3 wandering    15 carcass, 1-day adult    8 carcass, 4-day adult    9 carcass, 20-day adult    10 ovary, virgin 4-day female    14 ovary, mated 4-day female    9 testis, mated 4-day male    11 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    27 embryo 02-04hr    44 embryo 04-06hr    38 embryo 06-08hr    35 embryo 08-10hr    39 embryo 10-12hr    43 embryo 12-14hr    38 embryo 14-16hr    31 embryo 16-18hr    31 embryo 18-20hr    27 embryo 20-22hr    32 embryo 22-24hr    33 larva L1    16 larva L2    19 larva L3 12hr old    17 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6    32 larva L3 puffstage 7-9    45 white prepupae new    54 white prepupae 12hr    41 white prepupae 24hr    33 pupae 2d postWPP    29 pupae 3d postWPP    23 pupae 4d postWPP    18 adult male 01day    24 adult male 05day    27 adult male 30day    25 adult female 01day    20 adult female 05day    26 adult female 30day    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (27) embryo 02-04hr  (44) embryo 04-06hr  (38) embryo 06-08hr  (35) embryo 08-10hr  (39) embryo 10-12hr  (43) embryo 12-14hr  (38) embryo 14-16hr  (31) embryo 16-18hr  (31) embryo 18-20hr  (27) embryo 20-22hr  (32) embryo 22-24hr  (33) larva L1    16 larva L2    19 larva L3 12hr old    17 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6  (32) larva L3 puffstage 7-9  (45) white prepupae new  (54) white prepupae 12hr  (41) white prepupae 24hr  (33) pupae 2d postWPP  (29) pupae 3d postWPP    23 pupae 4d postWPP    18 adult male 01day    24 adult male 05day  (27) adult male 30day    25 adult female 01day    20 adult female 05day  26 adult female 30day    24 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    27 embryo 02-04hr    44 embryo 04-06hr    38 embryo 06-08hr    35 embryo 08-10hr    39 embryo 10-12hr    43 embryo 12-14hr    38 embryo 14-16hr    31 embryo 16-18hr    31 embryo 18-20hr    27 embryo 20-22hr    32 embryo 22-24hr    33 larva L1    16 larva L2    19 larva L3 12hr old    17 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6    32 larva L3 puffstage 7-9    45 white prepupae new    54 white prepupae 12hr    41 white prepupae 24hr    33 pupae 2d postWPP    29 pupae 3d postWPP    23 pupae 4d postWPP    18 adult male 01day    24 adult male 05day    27 adult male 30day    25 adult female 01day    20 adult female 05day    26 adult female 30day    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    27 embryo 02-04hr    44 embryo 04-06hr    38 embryo 06-08hr    35 embryo 08-10hr    39 embryo 10-12hr    43 embryo 12-14hr    38 embryo 14-16hr    31 embryo 16-18hr    31 embryo 18-20hr    27 embryo 20-22hr    32 embryo 22-24hr    33 larva L1    16 larva L2    19 larva L3 12hr old    17 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6    32 larva L3 puffstage 7-9    45 white prepupae new    54 white prepupae 12hr    41 white prepupae 24hr    33 pupae 2d postWPP    29 pupae 3d postWPP    23 pupae 4d postWPP    18 adult male 01day    24 adult male 05day    27 adult male 30day    25 adult female 01day    20 adult female 05day    26 adult female 30day    24 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    27 embryo 02-04hr    44 embryo 04-06hr    38 embryo 06-08hr    35 embryo 08-10hr    39 embryo 10-12hr    43 embryo 12-14hr    38 embryo 14-16hr    31 embryo 16-18hr    31 embryo 18-20hr    27 embryo 20-22hr    32 embryo 22-24hr    33 larva L1    16 larva L2    19 larva L3 12hr old    17 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6    32 larva L3 puffstage 7-9    45 white prepupae new    54 white prepupae 12hr    41 white prepupae 24hr    33 pupae 2d postWPP    29 pupae 3d postWPP    23 pupae 4d postWPP    18 adult male 01day    24 adult male 05day    27 adult male 30day    25 adult female 01day    20 adult female 05day    26 adult female 30day    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  27 embryo 02-04hr  (44) embryo 04-06hr  (38) embryo 06-08hr  (35) embryo 08-10hr  (39) embryo 10-12hr  (43) embryo 12-14hr  (38) embryo 14-16hr  31 embryo 16-18hr  31 embryo 18-20hr  27 embryo 20-22hr  32 embryo 22-24hr  (33) larva L1    16 larva L2    19 larva L3 12hr old    17 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6  32 larva L3 puffstage 7-9  (45) white prepupae new  (54) white prepupae 12hr  (41) white prepupae 24hr  (33) pupae 2d postWPP  29 pupae 3d postWPP    23 pupae 4d postWPP    18 adult male 01day    24 adult male 05day  27 adult male 30day    25 adult female 01day    20 adult female 05day  26 adult female 30day    24 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    27 embryo 02-04hr    44 embryo 04-06hr    38 embryo 06-08hr    35 embryo 08-10hr    39 embryo 10-12hr    43 embryo 12-14hr    38 embryo 14-16hr    31 embryo 16-18hr    31 embryo 18-20hr    27 embryo 20-22hr    32 embryo 22-24hr    33 larva L1    16 larva L2    19 larva L3 12hr old    17 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6    32 larva L3 puffstage 7-9    45 white prepupae new    54 white prepupae 12hr    41 white prepupae 24hr    33 pupae 2d postWPP    29 pupae 3d postWPP    23 pupae 4d postWPP    18 adult male 01day    24 adult male 05day    27 adult male 30day    25 adult female 01day    20 adult female 05day    26 adult female 30day    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    27 embryo 02-04hr    44 embryo 04-06hr    38 embryo 06-08hr    35 embryo 08-10hr    39 embryo 10-12hr    43 embryo 12-14hr    38 embryo 14-16hr    31 embryo 16-18hr    31 embryo 18-20hr    27 embryo 20-22hr    32 embryo 22-24hr    33 larva L1    16 larva L2    19 larva L3 12hr old    17 larva L3 puffstage 1-2    23 larva L3 puffstage 3-6    32 larva L3 puffstage 7-9    45 white prepupae new    54 white prepupae 12hr    41 white prepupae 24hr    33 pupae 2d postWPP    29 pupae 3d postWPP    23 pupae 4d postWPP    18 adult male 01day    24 adult male 05day    27 adult male 30day    25 adult female 01day    20 adult female 05day    26 adult female 30day    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    50 Schneider line 2 Sg4    48 embryonic 1182-4H    28 embryonic GM2    28 embryonic Kc167    29 embryonic S1    23 embryonic S3    22 leg disc CME L1    37 wing disc CME-W2    46 wing disc ML-DmD8    21 wing disc ML-DmD9    27 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    16 wing disc ML-DmD32    16 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    32 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    25 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    31 tumorous blood cells mbn2    44 ovary fGS/OSS    12 ovary OSC    12 ovary OSS    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (50) Schneider line 2 Sg4  (48) embryonic 1182-4H  (28) embryonic GM2  (28) embryonic Kc167  (29) embryonic S1    23 embryonic S3    22 leg disc CME L1  (37) wing disc CME-W2  (46) wing disc ML-DmD8    21 wing disc ML-DmD9  (27) wing disc ML-DmD16-c3    20 wing disc ML-DmD21    16 wing disc ML-DmD32    16 haltere disc ML-DmD17-c3  (56) eye-antennal disc ML-DmD11  (32) antennal disc ML-DmD20-c5  (30) mixed discs ML-DmD4-c1    25 CNS ML-DmBG1-c1  26 CNS ML-DmBG2-c2  (31) tumorous blood cells mbn2  (44) ovary fGS/OSS    12 ovary OSC    12 ovary OSS    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    50 Schneider line 2 Sg4    48 embryonic 1182-4H    28 embryonic GM2    28 embryonic Kc167    29 embryonic S1    23 embryonic S3    22 leg disc CME L1    37 wing disc CME-W2    46 wing disc ML-DmD8    21 wing disc ML-DmD9    27 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    16 wing disc ML-DmD32    16 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    32 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    25 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    31 tumorous blood cells mbn2    44 ovary fGS/OSS    12 ovary OSC    12 ovary OSS    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    50 Schneider line 2 Sg4    48 embryonic 1182-4H    28 embryonic GM2    28 embryonic Kc167    29 embryonic S1    23 embryonic S3    22 leg disc CME L1    37 wing disc CME-W2    46 wing disc ML-DmD8    21 wing disc ML-DmD9    27 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    16 wing disc ML-DmD32    16 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    32 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    25 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    31 tumorous blood cells mbn2    44 ovary fGS/OSS    12 ovary OSC    12 ovary OSS    7 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    50 Schneider line 2 Sg4    48 embryonic 1182-4H    28 embryonic GM2    28 embryonic Kc167    29 embryonic S1    23 embryonic S3    22 leg disc CME L1    37 wing disc CME-W2    46 wing disc ML-DmD8    21 wing disc ML-DmD9    27 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    16 wing disc ML-DmD32    16 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    32 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    25 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    31 tumorous blood cells mbn2    44 ovary fGS/OSS    12 ovary OSC    12 ovary OSS    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (50) Schneider line 2 Sg4  (48) embryonic 1182-4H  28 embryonic GM2  28 embryonic Kc167  29 embryonic S1    23 embryonic S3    22 leg disc CME L1  (37) wing disc CME-W2  (46) wing disc ML-DmD8    21 wing disc ML-DmD9  27 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    16 wing disc ML-DmD32    16 haltere disc ML-DmD17-c3  (56) eye-antennal disc ML-DmD11  32 antennal disc ML-DmD20-c5  30 mixed discs ML-DmD4-c1    25 CNS ML-DmBG1-c1  26 CNS ML-DmBG2-c2  31 tumorous blood cells mbn2  (44) ovary fGS/OSS    12 ovary OSC    12 ovary OSS    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    50 Schneider line 2 Sg4    48 embryonic 1182-4H    28 embryonic GM2    28 embryonic Kc167    29 embryonic S1    23 embryonic S3    22 leg disc CME L1    37 wing disc CME-W2    46 wing disc ML-DmD8    21 wing disc ML-DmD9    27 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    16 wing disc ML-DmD32    16 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    32 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    25 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    31 tumorous blood cells mbn2    44 ovary fGS/OSS    12 ovary OSC    12 ovary OSS    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    50 Schneider line 2 Sg4    48 embryonic 1182-4H    28 embryonic GM2    28 embryonic Kc167    29 embryonic S1    23 embryonic S3    22 leg disc CME L1    37 wing disc CME-W2    46 wing disc ML-DmD8    21 wing disc ML-DmD9    27 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    16 wing disc ML-DmD32    16 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    32 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    25 CNS ML-DmBG1-c1    26 CNS ML-DmBG2-c2    31 tumorous blood cells mbn2    44 ovary fGS/OSS    12 ovary OSC    12 ovary OSS    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult    10 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    23 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    22 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3    22 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3  (28) Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult    10 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    23 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    22 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3    22 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult    10 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    23 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    22 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3    22 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult    10 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    23 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    22 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3    22 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult    10 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    23 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    22 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3    22 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3  28 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult    10 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    23 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    22 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3    22 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult    10 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    23 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    22 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3    22 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    15 Cadmium 100 mM 48 hrs, 4-day adult    10 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    23 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    22 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3    22 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_27 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • RE36966 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036509 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7739-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG7739EY14009 Sterility Allele fertile CG7739EY14009 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG7739 Class Mutagen Stocks Known lesion CG7739DP00336 1 -- CG7739EY14009 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG7739 Class Mutagen Stocks Known lesion CG7739GD2472 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG7739KK109414 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes CG7739NIG.7739R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes CG7739αTub67C.PM in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD2472} NA P{KK109414} NA P{NIG.7739R} NA characterization construct P{tub-CG7739.mat} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}CG7739EY14009 NA P{Mae-UAS.6.11}CG7739DP00336 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG7739 - Aats-lys anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - B52 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - CG10306 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - CG10993 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - CG15735 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - CG16753 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - CG17454 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - CG1785 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - CG2199 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - CG3689 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - CG43444 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - CG5746 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - CG6073 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - CG7878 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - CG8043 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - CG8545 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - Cdc5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - Cypl anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - DnaJ-1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - Fmr1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - Gale anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - Hsc70-1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - Mtpα anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - Ote anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - Prx3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - Psi anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - Rbp1-like anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - RpL7-like anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - Rrp46 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - Rs1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - SC35 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - SF1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - Saf-B anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - SmG anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - Tango4 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - U4-U6-60K anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - bocksbeutel anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - clu anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - dod anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - mRpL3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - mRpL39 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - mRpS28 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - mod anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - ppan anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - qkr58E-3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7739 - snama anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG7739 allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0036509 DroID - A comprehensive database of gene and protein interactions. • FBgn0036509 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39684
Orthologs
OrthoDB Orthologs (40) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6W9JPH Dipteran inclusive ortholog search EOG637RP5 Insect inclusive ortholog search EOG6DBS8T Arthropod inclusive ortholog search EOG6ZPC9D Metazoa inclusive ortholog search EOG6H4JWW
Orthologs in Drosophila Species (EOG6W9JPH)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG7739     Drosophila simulans   Dsim\GD12554 Y   Drosophila sechellia   Dsec\GM24481 Y   Drosophila erecta   Dere\GG13538 Y   Drosophila yakuba   Dyak\GE19839 Y   Drosophila yakuba   Dyak\GE22837     Drosophila ananassae   Dana\GF24463 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA20555 Y   Drosophila persimilis   Dper\GL25540 Y   Drosophila willistoni   Dwil\GK10513 Y   Drosophila virilis   Dvir\GJ11447 Y   Drosophila mojavensis   Dmoj\GI12215 Y   Drosophila grimshawi   Dgri\GH16812 Y
Orthologs in non-Drosophila Dipterans (EOG637RP5)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL006343   Anopheles gambiae Malaria mosquito  Agam\AGAP011964   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ005252
Orthologs in non-Dipteran Insects (EOG6DBS8T)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB43226   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG010705   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH10284   Atta cephalotes Leafcutter ant  Acep\ACEP20864   Camponotus floridanus Florida carpenter ant  Cflo\CFLO20919   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12670   Linepithema humile Argentine ant  Lhum\LH10991   Pogonomyrmex barbatus Red harvester ant  Pbar\PB17948   Solenopsis invicta Red fire ant  Sinv\SINV19875   Acyrthosiphon pisum Pea aphid  Apim\ACYPI008666   Acyrthosiphon pisum Pea aphid  Apim\ACYPI000914   Bombyx mori Silkmoth  Bmor\BGIBMGA006889   Pediculus humanus Human body louse  Phum\PHUM256960   Tribolium castaneum Red flour beetle  Tcas\TC012004
Orthologs in non-Insect Arthropods (EOG6ZPC9D)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_304872   Ixodes scapularis Deer tick  Isca\ISCW006297
Orthologs in non-Arthropod Metazoa (EOG6H4JWW)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\tag-256   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_004320gn   Danio rerio Zebrafish  Drer\CR759753.1   Xenopus tropicalis Western clawed frog  Xtro\itfg1   Gallus gallus Domestic chicken  Ggal\ITFG1   Mus musculus House mouse  Mmus\Itfg1   Rattus norvegicus Norway rat  Rnor\Itfg1   Homo sapiens Human  Hsap\ITFG1
Human Orthologs (1)
Gene OMIM HGNC Hsap\ITFG1
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD12554 Drosophila sechellia Dsec\GM24481 Drosophila erecta Dere\GG13538 Drosophila yakuba Dyak\GE19839 Drosophila ananassae Dana\GF24463 Drosophila pseudoobscura pseudoobscura Dpse\GA20555 Drosophila persimilis Dper\GL25540 Drosophila willistoni Dwil\GK10513 Drosophila virilis Dvir\GJ11447 Drosophila mojavensis Dmoj\GI12215 Drosophila grimshawi Dgri\GH16812
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	20903 y1 w67c23; P{EPgy2}CG7739EY14009 21814 y1 w67c23; P{Mae-UAS.6.11}CG7739DP00336
VDRC	v51521 w1118; P{GD2472}v51521
Genomic Clones ( 1 )
	BACR07L07 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 32 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE36966
Other clones	DPiM_RE36966
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT22077 GH24950 HL02363 LD02537 LD17533 RE03264 RE10672 RE15505 RE16528 RE20665 RE21082 RE33875 RE34802 RE35847 RE36527 RE37075 RE37702 RE38723 RE45574 RE48744 RE50644 RE54378 RE68514
Other clones	63179 CK01.86C.C4 EC24213 EC25423 EK068342 EK189038 SD10540
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0036509 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39684
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_140519 RefSeq (Proteins) • NP_648776 DDBJ / EMBL / GenBank • AAF49618 AAL68289 AY075477 BI240265 CL943604 Entrez Gene - A searchable database of RefSeq genes. • 39684 UniProtKB/TrEMBL • Q9VUQ7
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • T-cell immunomodulatory protein (IPR024881) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE36966
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0036509 DroID - A comprehensive database of gene and protein interactions. • FBgn0036509 DRSC - Results from RNAi screens. • FBgn0036509 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036509 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7739-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0036509 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39684 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39684 modMine - Data generated by the modENCODE project. • FBgn0036509
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG7739 (Pek and Kai, 2011, Meyer et al., 2006, Robine et al., 2009, Okamura et al., 2008, Keleman et al., 2009.8.5, Wittkopp et al., 2008, Obbard et al., 2011, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
References ( 19 )
Research paper	Baycin-Hizal et al., 2011, J. Proteome Res. 10(6): 2777--2784 GlycoFly: A Database of Drosophila N-linked Glycoproteins Identified Using SPEG-MS Techniques. [FBrf0213834] Obbard et al., 2011, Mol. Biol. Evol. 28(2): 1043--1056 Recent and Recurrent Selective Sweeps of the Antiviral RNAi Gene Argonaute-2 in Three Species of Drosophila. [FBrf0212800] Pek and Kai, 2011, Proc. Natl. Acad. Sci. U.S.A. 108(29): 12007--12012 DEAD-box RNA helicase Belle/DDX3 and the RNA interference pathway promote mitotic chromosome segregation. [FBrf0214405] Robine et al., 2009, Curr. Biol. 19(24): 2066--2076 A broadly conserved pathway generates 3'UTR-directed primary piRNAs. [FBrf0209698] Okamura et al., 2008, Nat. Struct. Mol. Biol. 15(6): 581--590 Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster. [FBrf0204887] Meyer et al., 2006, PLoS Genet. 2(8): e134 Overlapping functions of argonaute proteins in patterning and morphogenesis of Drosophila embryos. [FBrf0194224]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Wittkopp et al., 2008, Nat. Genet. 40(3): Supplementary Information [FBrf0208881]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Matthews, 2008.4.15, DP and HP P-element insertions submitted to the Bloomington Drosophila Stock Center. DP and HP P-element insertions submitted to the Bloomington Drosophila Stock Center. [FBrf0204789] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]