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Gene Dmel\elgi

General Information
Symbol	Dmel\elgi	Species	D. melanogaster
Name	early girl	Annotation symbol	CG17033
Feature type	protein_coding_gene	FlyBase ID	FBgn0036546
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	72B2-72C1	Sequence location	3L:15,949,650..15,951,533 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene early girl is referred to in FlyBase by the symbol Dmel\elgi (CG17033, FBgn0036546). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding. There is experimental evidence that it is involved in the biological process: regulation of meiotic cell cycle. 7 alleles are reported. The phenotypes of these alleles are annotated with: oocyte; mesothoracic tergum. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: SIAH-type domain; TRAF-like; USP8 interacting; Zinc finger, RING-type; Zinc finger, RING-type, conserved site; Zinc finger, RING/FYVE/PHD-type. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval salivary gland, larval trachea, adult spermathecae, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1636108_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of elgi. Gene sequence location is 3L:15949650..15951533.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 72B2-72C1   Limits computationally determined from genome sequence between P{EP}Tfb2EP572 and P{lacW}thj5C8&P{PZ}Mbs03802
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\elgi for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46 Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) elgi-RA FBtr0075510  NM_140559   1611   315 elgi-RB FBtr0333573  NM_001274975   1534   315
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein elgi-PA   FBpp0075265   36.1   315   6.68     NP_648816   AAF49566 elgi-PB   FBpp0305750   36.1   315   6.68     NP_001261904   AGB94597
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, RING-type (IPR001841) TRAF-like (IPR008974) USP8 interacting (IPR015036) Zinc finger, RING-type, conserved site (IPR017907) Zinc finger, RING/FYVE/PHD-type (IPR013083) SIAH-type domain (IPR013323)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA540002   AA950105   AE014296 AAF49566   AE014296 AGB94597   AI260526   AI514734   AI945863   AW943555   AY051931 AAK93355   BI215723   BI363276   BI363325   BI364907   BI373331   BI374661   BI375163   BI376054   BI485676   BP554890   BP556324   CO177160   CO181095   CO268226   CO271050   CO285754   CO313857   CO341850   CO344728   CZ479596   CZ479597   CZ479599   EC070914   EC080589   EC080986   EC214071   EC219754   EC225709   EC231467   EC241832   EC255262   EL882277   EL882628
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VUV7
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval salivary gland, larval trachea, adult spermathecae, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    324.3 Larval Midgut    137.6 Larval Hindgut    118.1 Larval Malpighian Tubules    125.3 Larval Fat Body    227.5 Larval Salivary Gland    187.1 Larval Trachea    262.05 Larval Carcass    135.025 Adult Head    163.1 Adult Eye    179.25 Adult Brain    250.3 Adult Thoracic-Abdominal Ganglion    296.6 Adult Crop    316.7 Adult Midgut    115.5 Adult Hindgut    138.8 Adult Malpighian Tubules    95.4 Adult Fat Body    165.8 Adult Salivary Gland    96.9 Adult Heart    202.55 Adult VirginFemale Spermatheca    108.6 Adult InseminatedFemale Spermatheca    146.8 Adult Ovary    587.3 Adult Testis    279.7 Adult Male Accessory Gland    204.8 Adult Carcass    119.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    324.3 Larval Midgut    137.6 Larval Hindgut    118.1 Larval Malpighian Tubules    125.3 Larval Fat Body    227.5 Larval Salivary Gland    187.1 Larval Trachea    262.05 Larval Carcass    135.025 Adult Head    163.1 Adult Eye    179.25 Adult Brain    250.3 Adult Thoracic-Abdominal Ganglion    296.6 Adult Crop    316.7 Adult Midgut    115.5 Adult Hindgut    138.8 Adult Malpighian Tubules    95.4 Adult Fat Body    165.8 Adult Salivary Gland    96.9 Adult Heart    202.55 Adult VirginFemale Spermatheca    108.6 Adult InseminatedFemale Spermatheca    146.8 Adult Ovary  (587.3) Adult Testis    279.7 Adult Male Accessory Gland    204.8 Adult Carcass    119.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    324.3 Larval Midgut    137.6 Larval Hindgut    118.1 Larval Malpighian Tubules    125.3 Larval Fat Body    227.5 Larval Salivary Gland    187.1 Larval Trachea    262.05 Larval Carcass    135.025 Adult Head    163.1 Adult Eye    179.25 Adult Brain    250.3 Adult Thoracic-Abdominal Ganglion    296.6 Adult Crop    316.7 Adult Midgut    115.5 Adult Hindgut    138.8 Adult Malpighian Tubules    95.4 Adult Fat Body    165.8 Adult Salivary Gland    96.9 Adult Heart    202.55 Adult VirginFemale Spermatheca    108.6 Adult InseminatedFemale Spermatheca    146.8 Adult Ovary    587.3 Adult Testis    279.7 Adult Male Accessory Gland    204.8 Adult Carcass    119.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    324.3 Larval Midgut    137.6 Larval Hindgut    118.1 Larval Malpighian Tubules    125.3 Larval Fat Body    227.5 Larval Salivary Gland    187.1 Larval Trachea    262.05 Larval Carcass    135.025 Adult Head    163.1 Adult Eye    179.25 Adult Brain    250.3 Adult Thoracic-Abdominal Ganglion    296.6 Adult Crop    316.7 Adult Midgut    115.5 Adult Hindgut    138.8 Adult Malpighian Tubules    95.4 Adult Fat Body    165.8 Adult Salivary Gland    96.9 Adult Heart    202.55 Adult VirginFemale Spermatheca    108.6 Adult InseminatedFemale Spermatheca    146.8 Adult Ovary    587.3 Adult Testis    279.7 Adult Male Accessory Gland    204.8 Adult Carcass    119.1 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    324.3 Larval Midgut    137.6 Larval Hindgut    118.1 Larval Malpighian Tubules    125.3 Larval Fat Body    227.5 Larval Salivary Gland    187.1 Larval Trachea    262.05 Larval Carcass    135.025 Adult Head    163.1 Adult Eye    179.25 Adult Brain    250.3 Adult Thoracic-Abdominal Ganglion    296.6 Adult Crop    316.7 Adult Midgut    115.5 Adult Hindgut    138.8 Adult Malpighian Tubules    95.4 Adult Fat Body    165.8 Adult Salivary Gland    96.9 Adult Heart    202.55 Adult VirginFemale Spermatheca    108.6 Adult InseminatedFemale Spermatheca    146.8 Adult Ovary    587.3 Adult Testis    279.7 Adult Male Accessory Gland    204.8 Adult Carcass    119.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    324.3 Larval Midgut    137.6 Larval Hindgut    118.1 Larval Malpighian Tubules    125.3 Larval Fat Body    227.5 Larval Salivary Gland    187.1 Larval Trachea    262.05 Larval Carcass    135.025 Adult Head    163.1 Adult Eye    179.25 Adult Brain    250.3 Adult Thoracic-Abdominal Ganglion    296.6 Adult Crop    316.7 Adult Midgut    115.5 Adult Hindgut    138.8 Adult Malpighian Tubules    95.4 Adult Fat Body    165.8 Adult Salivary Gland    96.9 Adult Heart    202.55 Adult VirginFemale Spermatheca    108.6 Adult InseminatedFemale Spermatheca    146.8 Adult Ovary  587.3 Adult Testis    279.7 Adult Male Accessory Gland    204.8 Adult Carcass    119.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    324.3 Larval Midgut    137.6 Larval Hindgut    118.1 Larval Malpighian Tubules    125.3 Larval Fat Body    227.5 Larval Salivary Gland    187.1 Larval Trachea    262.05 Larval Carcass    135.025 Adult Head    163.1 Adult Eye    179.25 Adult Brain    250.3 Adult Thoracic-Abdominal Ganglion    296.6 Adult Crop    316.7 Adult Midgut    115.5 Adult Hindgut    138.8 Adult Malpighian Tubules    95.4 Adult Fat Body    165.8 Adult Salivary Gland    96.9 Adult Heart    202.55 Adult VirginFemale Spermatheca    108.6 Adult InseminatedFemale Spermatheca    146.8 Adult Ovary    587.3 Adult Testis    279.7 Adult Male Accessory Gland    204.8 Adult Carcass    119.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    324.3 Larval Midgut    137.6 Larval Hindgut    118.1 Larval Malpighian Tubules    125.3 Larval Fat Body    227.5 Larval Salivary Gland    187.1 Larval Trachea    262.05 Larval Carcass    135.025 Adult Head    163.1 Adult Eye    179.25 Adult Brain    250.3 Adult Thoracic-Abdominal Ganglion    296.6 Adult Crop    316.7 Adult Midgut    115.5 Adult Hindgut    138.8 Adult Malpighian Tubules    95.4 Adult Fat Body    165.8 Adult Salivary Gland    96.9 Adult Heart    202.55 Adult VirginFemale Spermatheca    108.6 Adult InseminatedFemale Spermatheca    146.8 Adult Ovary    587.3 Adult Testis    279.7 Adult Male Accessory Gland    204.8 Adult Carcass    119.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    163.1   NA  Eye    179.25   NA  Brain    250.3   324.3  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    296.6   NA  Crop    316.7   137.6  Midgut    115.5   118.1  Hindgut    138.8   125.3  Malpighian Tubules    95.4   227.5  Fat Body    165.8   187.1  Salivary Gland    96.9   NA  Heart    202.55   262.05  Trachea    NA   NA  VirginFemale Spermatheca    108.6   NA  InseminatedFemale Spermatheca    146.8   NA  Ovary    587.3   NA  Testis    279.7   NA  Male Accessory Gland    204.8   135.025  Carcass    119.1 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3    5 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    9 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    22 ovary, mated 4-day female    19 testis, mated 4-day male    51 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3    5 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    9 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    22 ovary, mated 4-day female    19 testis, mated 4-day male  (51) accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3    5 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    9 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    22 ovary, mated 4-day female    19 testis, mated 4-day male    51 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3    5 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    9 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    22 ovary, mated 4-day female    19 testis, mated 4-day male    51 accessory gland, mated 4-day male    8 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3    5 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    9 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    22 ovary, mated 4-day female    19 testis, mated 4-day male    51 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3    5 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    9 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    22 ovary, mated 4-day female    19 testis, mated 4-day male  (51) accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3    5 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    9 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    22 ovary, mated 4-day female    19 testis, mated 4-day male    51 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    20 central nervous system, larvae L3    5 central nervous system, pupae P8    8 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    2 head, mated 4-day female    3 head, mated 20-day female    3 head, mated 1-day male    6 head, mated 4-day male    4 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    4 fat body, larvae L3 wandering    1 fat body, white prepupae    4 fat body, pupae P8    0 carcass, larvae L3 wandering    9 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    22 ovary, mated 4-day female    19 testis, mated 4-day male    51 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    60 embryo 02-04hr    58 embryo 04-06hr    49 embryo 06-08hr    38 embryo 08-10hr    37 embryo 10-12hr    44 embryo 12-14hr    20 embryo 14-16hr    24 embryo 16-18hr    21 embryo 18-20hr    13 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    22 white prepupae new    23 white prepupae 12hr    26 white prepupae 24hr    29 pupae 2d postWPP    20 pupae 3d postWPP    14 pupae 4d postWPP    16 adult male 01day    18 adult male 05day    28 adult male 30day    29 adult female 01day    25 adult female 05day    34 adult female 30day    34 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (60) embryo 02-04hr  (58) embryo 04-06hr  (49) embryo 06-08hr  (38) embryo 08-10hr  (37) embryo 10-12hr  (44) embryo 12-14hr    20 embryo 14-16hr    24 embryo 16-18hr    21 embryo 18-20hr    13 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    22 white prepupae new    23 white prepupae 12hr  26 white prepupae 24hr  (29) pupae 2d postWPP    20 pupae 3d postWPP    14 pupae 4d postWPP    16 adult male 01day    18 adult male 05day  (28) adult male 30day  (29) adult female 01day    25 adult female 05day  (34) adult female 30day  (34) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    60 embryo 02-04hr    58 embryo 04-06hr    49 embryo 06-08hr    38 embryo 08-10hr    37 embryo 10-12hr    44 embryo 12-14hr    20 embryo 14-16hr    24 embryo 16-18hr    21 embryo 18-20hr    13 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    22 white prepupae new    23 white prepupae 12hr    26 white prepupae 24hr    29 pupae 2d postWPP    20 pupae 3d postWPP    14 pupae 4d postWPP    16 adult male 01day    18 adult male 05day    28 adult male 30day    29 adult female 01day    25 adult female 05day    34 adult female 30day    34 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    60 embryo 02-04hr    58 embryo 04-06hr    49 embryo 06-08hr    38 embryo 08-10hr    37 embryo 10-12hr    44 embryo 12-14hr    20 embryo 14-16hr    24 embryo 16-18hr    21 embryo 18-20hr    13 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    22 white prepupae new    23 white prepupae 12hr    26 white prepupae 24hr    29 pupae 2d postWPP    20 pupae 3d postWPP    14 pupae 4d postWPP    16 adult male 01day    18 adult male 05day    28 adult male 30day    29 adult female 01day    25 adult female 05day    34 adult female 30day    34 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    60 embryo 02-04hr    58 embryo 04-06hr    49 embryo 06-08hr    38 embryo 08-10hr    37 embryo 10-12hr    44 embryo 12-14hr    20 embryo 14-16hr    24 embryo 16-18hr    21 embryo 18-20hr    13 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    22 white prepupae new    23 white prepupae 12hr    26 white prepupae 24hr    29 pupae 2d postWPP    20 pupae 3d postWPP    14 pupae 4d postWPP    16 adult male 01day    18 adult male 05day    28 adult male 30day    29 adult female 01day    25 adult female 05day    34 adult female 30day    34 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (60) embryo 02-04hr  (58) embryo 04-06hr  (49) embryo 06-08hr  (38) embryo 08-10hr  (37) embryo 10-12hr  (44) embryo 12-14hr    20 embryo 14-16hr    24 embryo 16-18hr    21 embryo 18-20hr    13 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    22 white prepupae new    23 white prepupae 12hr  26 white prepupae 24hr  29 pupae 2d postWPP    20 pupae 3d postWPP    14 pupae 4d postWPP    16 adult male 01day    18 adult male 05day  28 adult male 30day  29 adult female 01day    25 adult female 05day  (34) adult female 30day  (34) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    60 embryo 02-04hr    58 embryo 04-06hr    49 embryo 06-08hr    38 embryo 08-10hr    37 embryo 10-12hr    44 embryo 12-14hr    20 embryo 14-16hr    24 embryo 16-18hr    21 embryo 18-20hr    13 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    22 white prepupae new    23 white prepupae 12hr    26 white prepupae 24hr    29 pupae 2d postWPP    20 pupae 3d postWPP    14 pupae 4d postWPP    16 adult male 01day    18 adult male 05day    28 adult male 30day    29 adult female 01day    25 adult female 05day    34 adult female 30day    34 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    60 embryo 02-04hr    58 embryo 04-06hr    49 embryo 06-08hr    38 embryo 08-10hr    37 embryo 10-12hr    44 embryo 12-14hr    20 embryo 14-16hr    24 embryo 16-18hr    21 embryo 18-20hr    13 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    22 white prepupae new    23 white prepupae 12hr    26 white prepupae 24hr    29 pupae 2d postWPP    20 pupae 3d postWPP    14 pupae 4d postWPP    16 adult male 01day    18 adult male 05day    28 adult male 30day    29 adult female 01day    25 adult female 05day    34 adult female 30day    34 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    9 Schneider line 2 Sg4    23 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    15 embryonic S1    12 embryonic S3    10 leg disc CME L1    12 wing disc CME-W2    11 wing disc ML-DmD8    13 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    22 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    11 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    15 tumorous blood cells mbn2    6 ovary fGS/OSS    14 ovary OSC    9 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    9 Schneider line 2 Sg4    23 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    15 embryonic S1    12 embryonic S3    10 leg disc CME L1    12 wing disc CME-W2    11 wing disc ML-DmD8    13 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    22 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    11 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    15 tumorous blood cells mbn2    6 ovary fGS/OSS    14 ovary OSC    9 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    9 Schneider line 2 Sg4    23 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    15 embryonic S1    12 embryonic S3    10 leg disc CME L1    12 wing disc CME-W2    11 wing disc ML-DmD8    13 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    22 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    11 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    15 tumorous blood cells mbn2    6 ovary fGS/OSS    14 ovary OSC    9 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    9 Schneider line 2 Sg4    23 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    15 embryonic S1    12 embryonic S3    10 leg disc CME L1    12 wing disc CME-W2    11 wing disc ML-DmD8    13 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    22 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    11 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    15 tumorous blood cells mbn2    6 ovary fGS/OSS    14 ovary OSC    9 ovary OSS    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    9 Schneider line 2 Sg4    23 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    15 embryonic S1    12 embryonic S3    10 leg disc CME L1    12 wing disc CME-W2    11 wing disc ML-DmD8    13 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    22 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    11 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    15 tumorous blood cells mbn2    6 ovary fGS/OSS    14 ovary OSC    9 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    9 Schneider line 2 Sg4    23 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    15 embryonic S1    12 embryonic S3    10 leg disc CME L1    12 wing disc CME-W2    11 wing disc ML-DmD8    13 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    22 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    11 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    15 tumorous blood cells mbn2    6 ovary fGS/OSS    14 ovary OSC    9 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    9 Schneider line 2 Sg4    23 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    15 embryonic S1    12 embryonic S3    10 leg disc CME L1    12 wing disc CME-W2    11 wing disc ML-DmD8    13 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    22 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    11 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    15 tumorous blood cells mbn2    6 ovary fGS/OSS    14 ovary OSC    9 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    9 Schneider line 2 Sg4    23 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    15 embryonic S1    12 embryonic S3    10 leg disc CME L1    12 wing disc CME-W2    11 wing disc ML-DmD8    13 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    22 wing disc ML-DmD32    5 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    11 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    15 tumorous blood cells mbn2    6 ovary fGS/OSS    14 ovary OSC    9 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    4 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    24 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    4 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    24 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    4 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    24 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    4 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    24 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    4 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    24 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    4 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    24 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    4 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    24 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    4 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    24 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    17 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_01 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	BDGP expression data • LD41235 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036546 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG17033-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele partially lethal - majority die, with Scer\GAL4pnr-MD237 elgiGD9268 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 elgiGD9268 Phenotype manifest in Allele mesothoracic tergum, with Scer\GAL4pnr-MD237 elgiGD9268 oocyte elgi1 oocyte (with elgi1) elgi2 oocyte (with elgi2) elgi1
Classical Alleles ( 4 )
For All Classical Alleles Show
Allele of elgi Class Mutagen Stocks Known lesion elgie01779 piggyBac transposase 1 -- elgie01780 piggyBac transposase 1 -- elgi1 amorphic allele - genetic evidence P-element activity 0 Yes elgi2 P-element activity 0 Yes
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of elgi Class Mutagen Stocks Known lesion elgiGD9268 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes elgiKK101307 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes elgiNIG.17033R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)brm11 (Von Stetina et al., 2008)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{KK101307} NA P{NIG.17033R} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{RB}elgie01779 NA PBac{RB}elgie01780 NA
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function
CV term Evidence References
protein binding inferred from physical interaction with Myo10A (Liu et al., 2008)
Biological Process
CV term Evidence References
regulation of meiotic cell cycle inferred from mutant phenotype (Von Stetina et al., 2008)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
protein tag inferred from electronic annotation with InterPro:IPR015036 (FlyBase Curators et al., 2004-) ubiquitin-protein ligase activity inferred from electronic annotation with InterPro:IPR013323 (FlyBase Curators et al., 2004-) zinc ion binding inferred from electronic annotation with InterPro:IPR001841, InterPro:IPR013323 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
protein ubiquitination inferred from electronic annotation with InterPro:IPR013323, InterPro:IPR015036 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
elgi - CG11594 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) elgi - Cpr31A anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions elgi allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0036546 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39735
Orthologs
OrthoDB Orthologs (38) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG651F9S Dipteran inclusive ortholog search EOG68PMTX Insect inclusive ortholog search EOG6189J3 Arthropod inclusive ortholog search EOG6V6WZ9 Metazoa inclusive ortholog search EOG6B8X6X
Orthologs in Drosophila Species (EOG651F9S)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\elgi     Drosophila simulans   Dsim\GD14579 Y   Drosophila sechellia   Dsec\GM25563 Y   Drosophila erecta   Dere\GG15934 Y   Drosophila yakuba   Dyak\GE22283     Drosophila yakuba   Dyak\GE22867 Y   Drosophila ananassae   Dana\GF24099 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA14285 Y   Drosophila persimilis   Dper\GL25216 Y   Drosophila willistoni   Dwil\GK24430 Y   Drosophila virilis   Dvir\GJ13569 Y   Drosophila mojavensis   Dmoj\GI11873 Y   Drosophila grimshawi   Dgri\GH14771 Y
Orthologs in non-Drosophila Dipterans (EOG68PMTX)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL008184   Anopheles gambiae Malaria mosquito  Agam\AGAP001882   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ008386
Orthologs in non-Dipteran Insects (EOG6189J3)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\elgi   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG014882   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH17528   Atta cephalotes Leafcutter ant  Acep\ACEP12953   Camponotus floridanus Florida carpenter ant  Cflo\CFLO12810   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL20361   Linepithema humile Argentine ant  Lhum\LH17690   Pogonomyrmex barbatus Red harvester ant  Pbar\PB18321   Solenopsis invicta Red fire ant  Sinv\SINV21794   Acyrthosiphon pisum Pea aphid  Apim\ACYPI22584   Bombyx mori Silkmoth  Bmor\BGIBMGA004673   Pediculus humanus Human body louse  Phum\PHUM474820   Tribolium castaneum Red flour beetle  Tcas\TC002979
Orthologs in non-Insect Arthropods (EOG6V6WZ9)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\matK   Ixodes scapularis Deer tick  Isca\ISCW012435
Orthologs in non-Arthropod Metazoa (EOG6B8X6X)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_019875gn Y Danio rerio Zebrafish  Drer\rnf41 Y Xenopus tropicalis Western clawed frog  Xtro\rnf41 Y Gallus gallus Domestic chicken  Ggal\ENSGALG00000018835 Y Mus musculus House mouse  Mmus\Rnf41 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000023456 Y Homo sapiens Human  Hsap\RNF41 Y
Human Orthologs (1)
Gene OMIM HGNC Hsap\RNF41
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD14579 Drosophila sechellia Dsec\GM25563 Drosophila erecta Dere\GG15934 Drosophila yakuba Dyak\GE22867 Drosophila ananassae Dana\GF24099 Drosophila pseudoobscura pseudoobscura Dpse\GA14285 Drosophila persimilis Dper\GL25216 Drosophila willistoni Dwil\GK24430 Drosophila virilis Dvir\GJ13569 Drosophila mojavensis Dmoj\GI11873 Drosophila grimshawi Dgri\GH14771
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Harvard	- PBac{RB}elgie01779 - PBac{RB}elgie01780
VDRC	v32830 w1118; P{GD9268}v32830 v32832 w1118; P{GD9268}v32832
Genomic Clones ( 1 )
	BACR18K24 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 34 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD41235
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LD19320 LD28635 LP04426 RE22319 RE48047 RE48105 RE50105 RE60591 RE62309 RE62909 RE63978 RE69008
Other clones	107803 107965 214409.59 bs17g02 CK01.42D.D6 CK01.67A.D12 CK01.77D.F3 CK01.107D.C8 CK01.110D.G8 EC13534 EK052648 EK060622 EK090644 EK101660 EK234189 EP13260 EP19805 FGM232C07 FGM302G09 IP12054 IP12354
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0036546 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39735
Antibody Information
Other Information
Discoverer
Etymology
	The gene is named "early girl" based on the mutant phenotype; progression from prophase I to metaphase I occurs prematurely in mutant oocytes. (Von Stetina et al., 2008)
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: elgi CG17033 (Von Stetina et al., 2008)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_140559 NM_001274975 RefSeq (Proteins) • NP_648816 NP_001261904 DDBJ / EMBL / GenBank • AAF49566 AAK93355 AGB94597 AI514734 AI945863 AW943555 AY051931 CZ479596 CZ479597 CZ479599 Entrez Gene - A searchable database of RefSeq genes. • 39735 UniProtKB/TrEMBL • Q9VUV7
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, RING-type (IPR001841) TRAF-like (IPR008974) USP8 interacting (IPR015036) Zinc finger, RING-type, conserved site (IPR017907) Zinc finger, RING/FYVE/PHD-type (IPR013083) SIAH-type domain (IPR013323) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD41235
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0036546 DRSC - Results from RNAi screens. • FBgn0036546 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036546 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG17033-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0036546 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39735 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39735 modMine - Data generated by the modENCODE project. • FBgn0036546
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	CG17033 (Liu et al., 2008, Stetina et al., 2008, Von Stetina et al., 2008, Keleman et al., 2009.8.5, Japanese National Institute of Genetics, 2012.5.21) elgi (Von Stetina et al., 2008, Cooper and Kennison, 2011, Yenerall et al., 2011)
Name Synonym	CG17033   early girl (Von Stetina et al., 2008, )
Secondary FlyBase IDs
References ( 20 )
Research paper	Cooper and Kennison, 2011, PLoS ONE 6(8): e23509 Molecular Genetic Analyses of Polytene Chromosome Region 72A-D in Drosophila melanogaster Reveal a Gene Desert in 72D. [FBrf0214748] Yenerall et al., 2011, BMC Evol. Biol. 11: 364 Mechanisms of intron gain and loss in Drosophila. [FBrf0217682] Liu et al., 2008, Development 135(1): 53--63 Sisyphus, the Drosophila myosin XV homolog, traffics within filopodia transporting key sensory and adhesion cargos. [FBrf0200619] Von Stetina et al., 2008, Development 135(22): 3697--3706 α-Endosulfine is a conserved protein required for oocyte meiotic maturation in Drosophila. [FBrf0206240]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file) Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] Oliver, 2001.8.16, Genome Res.: File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). [FBrf0137492] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
Abstract	Stetina et al., 2008, A. Dros. Res. Conf. 49: 155 alpha-Endosulfine is a conserved protein required for meiotic maturation that interacts with an E3 ubiquitin ligase and regulates Twine/CDC25 levels. [FBrf0203717]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]
Curated genome annotation	FamiliarityBreedsContempt, 1999.11, [Automatic annotations performed at the Celera Jamboreee.] [Automatic annotations performed at the Celera Jamboreee.] [FBrf0126705]