• Home
• Tools
  • Tools Overview
  • Query Tools

    
    • QuickSearch
    • QueryBuilder
    • TermLink
    • CytoSearch
    • Interactions Browser
    • ImageBrowse
    • Find A Person
    • Google™ FlyBase
  • Genomic/Map Tools

    
    • BLAST
    • GBrowse
    • CytoSearch
    • Aberrations Maps
    • Chromosome Maps
    • Coordinates Converter
  • Retrieve/Convert

    
    • Batch Download
    • Coordinates Converter
    • ID Converter
  • Data Submission

    
    • Fast-Track Your Paper
    • Submit Personal Comm
    • Add A New Person
    • Update Person Info
  • People

    
    • Find A Person
    • Add A New Person
    • Update Person Info
• Files
  • Files Overview
  • Downloads:
  • Precomputed files
  • Archived data
  • Releases (FTP)
  • Genomes (FTP)
  • AAA data (FTP)
  • Lists:
  • Transposons (Dmel)
  • Transposons (other)
  • Vectors & Constructs
  • Anatomical Terms
  • Map Conversion
• Species
  • Phylogeny
  • Sequenced Species
  • Synteny Table
  • Color Illustrations
  • Abbreviations
• Documents
  • About FlyBase
  • Reference Manual:
  • Sections
  • Contents
  • Nomenclature
  • Release Notes
• Resources
  • All Resources
  • Model Organisms
  • Stock Collections
  • Other links:
  • BDGP
  • DGRC
  • FlyExpress
  • Interactive Fly
  • modENCODE
  • Textpresso for Fly
• News
  • News
  • FlyBase Forum
  • FlyBase Positions
  • Meetings
  • Courses
  • Fly Board
  • White papers
  • Funding
  • bionet.dros
• Help
  • Google™ FlyBase
  • Site Map
  • FAQs
  • FlyBase Guides
  • Video Tutorials
  • Report help
  • New to Flies
  • Pers. comm.
  • Author guidelines
  • Contact FlyBase
• Archives
  • Prior Release
  • Other Archives
  • Coordinate Converter

Gene Dmel\CG13049

General Information
Symbol	Dmel\CG13049	Species	D. melanogaster
Name		Annotation symbol	CG13049
Feature type	protein_coding_gene	FlyBase ID	FBgn0036592
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	72D12-72D12	Sequence location	3L:16,274,229..16,275,092 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG13049 (FBgn0036592). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: Golgi organization. 2 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has 2 annotated transcripts and 2 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of no expression detected. Peak expression observed within 12-24 hour embryonic stages, during early larval stages. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1632690_a_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG13049. Gene sequence location is 3L:16274229..16275092.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01	Sequence features BKN33103 HFA09930
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 72D12-72D12   Limits computationally determined from genome sequence between P{lacW}l(3)72Dnj5A4 and P{lacW}l(3)s3123s3123
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG13049 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG13049-RA FBtr0075477  NM_168657   735   181 CG13049-RB FBtr0075476  NM_140603   801   223
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG13049-PA   FBpp0075232   17.3   181   10.37     NP_730133   AAN11766 CG13049-PB   FBpp0075231   22.0   223   10.65     NP_648860   AAF49506
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014296 AAF49506   AE014296 AAN11766   AY095198 AAM12291   BI228872   BQ102926   BQ102932   BQ103229   CO300838   CO330300   CO330392   EC051947   EC053862   EC053965   EC054453   EC054955   EC055513   EC056116   EC088217   EC213087   EC216325   EC223190   EC239438   EC245736   GH739125   GH739578   GH739726   GH739793   GH742463   GH743331   GH744827   GH745544   GH761712   GH763121   GH763221   GH764040   GH764669   GH765701   GH766332   GH768202   GH768794   GH769174   GH769604
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8SWS3 Q9VV16
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0036592    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0036592 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of no expression detected. Peak expression observed within 12-24 hour embryonic stages, during early larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0036592 expression level Developmental Stage   Expression Level embryo 00-02hr    124 embryo 02-04hr    54 embryo 04-06hr    48 embryo 06-08hr    60 embryo 08-10hr    160 embryo 10-12hr    110 embryo 12-14hr    130 embryo 14-16hr    6409 embryo 16-18hr    37902 embryo 18-20hr    27986 embryo 20-22hr    406 embryo 22-24hr    539 larva L1    289 larva L2    15704 larva L3 12hr old    13324 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    28 white prepupae new    19 white prepupae 12hr    1190 white prepupae 24hr    252 pupae 2d postWPP    332 pupae 3d postWPP    1506 pupae 4d postWPP    509 adult male 01day    58 adult male 05day    67 adult male 30day    50 adult female 01day    12 adult female 05day    0 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (124) embryo 02-04hr    54 embryo 04-06hr    48 embryo 06-08hr    60 embryo 08-10hr  (160) embryo 10-12hr  (110) embryo 12-14hr  (130) embryo 14-16hr  (6409) embryo 16-18hr  (37902) embryo 18-20hr  (27986) embryo 20-22hr  (406) embryo 22-24hr  (539) larva L1  (289) larva L2  (15704) larva L3 12hr old  (13324) larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    28 white prepupae new    19 white prepupae 12hr  (1190) white prepupae 24hr  (252) pupae 2d postWPP  (332) pupae 3d postWPP  (1506) pupae 4d postWPP  (509) adult male 01day    58 adult male 05day    67 adult male 30day    50 adult female 01day    12 adult female 05day    0 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    124 embryo 02-04hr    54 embryo 04-06hr    48 embryo 06-08hr    60 embryo 08-10hr    160 embryo 10-12hr    110 embryo 12-14hr    130 embryo 14-16hr  (6409) embryo 16-18hr  (37902) embryo 18-20hr  (27986) embryo 20-22hr    406 embryo 22-24hr    539 larva L1    289 larva L2  (15704) larva L3 12hr old  (13324) larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    28 white prepupae new    19 white prepupae 12hr    1190 white prepupae 24hr    252 pupae 2d postWPP    332 pupae 3d postWPP  1506 pupae 4d postWPP    509 adult male 01day    58 adult male 05day    67 adult male 30day    50 adult female 01day    12 adult female 05day    0 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    124 embryo 02-04hr    54 embryo 04-06hr    48 embryo 06-08hr    60 embryo 08-10hr    160 embryo 10-12hr    110 embryo 12-14hr    130 embryo 14-16hr    6409 embryo 16-18hr  (37902) embryo 18-20hr  (27986) embryo 20-22hr    406 embryo 22-24hr    539 larva L1    289 larva L2  (15704) larva L3 12hr old  (13324) larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    28 white prepupae new    19 white prepupae 12hr    1190 white prepupae 24hr    252 pupae 2d postWPP    332 pupae 3d postWPP    1506 pupae 4d postWPP    509 adult male 01day    58 adult male 05day    67 adult male 30day    50 adult female 01day    12 adult female 05day    0 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    124 embryo 02-04hr    54 embryo 04-06hr    48 embryo 06-08hr    60 embryo 08-10hr    160 embryo 10-12hr    110 embryo 12-14hr    130 embryo 14-16hr    6409 embryo 16-18hr    37902 embryo 18-20hr    27986 embryo 20-22hr    406 embryo 22-24hr    539 larva L1    289 larva L2    15704 larva L3 12hr old    13324 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    28 white prepupae new    19 white prepupae 12hr    1190 white prepupae 24hr    252 pupae 2d postWPP    332 pupae 3d postWPP    1506 pupae 4d postWPP    509 adult male 01day    58 adult male 05day    67 adult male 30day    50 adult female 01day    12 adult female 05day    0 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0036592 expression level Developmental Stage   Expression Level embryo 00-02hr    124 embryo 02-04hr    54 embryo 04-06hr    48 embryo 06-08hr    60 embryo 08-10hr    160 embryo 10-12hr    110 embryo 12-14hr    130 embryo 14-16hr    6409 embryo 16-18hr    37902 embryo 18-20hr    27986 embryo 20-22hr    406 embryo 22-24hr    539 larva L1    289 larva L2    15704 larva L3 12hr old    13324 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    28 white prepupae new    19 white prepupae 12hr    1190 white prepupae 24hr    252 pupae 2d postWPP    332 pupae 3d postWPP    1506 pupae 4d postWPP    509 adult male 01day    58 adult male 05day    67 adult male 30day    50 adult female 01day    12 adult female 05day    0 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  124 embryo 02-04hr    54 embryo 04-06hr    48 embryo 06-08hr    60 embryo 08-10hr  (160) embryo 10-12hr  110 embryo 12-14hr  130 embryo 14-16hr  (6409) embryo 16-18hr  (37902) embryo 18-20hr  (27986) embryo 20-22hr  (406) embryo 22-24hr  (539) larva L1  (289) larva L2  (15704) larva L3 12hr old  (13324) larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    28 white prepupae new    19 white prepupae 12hr  (1190) white prepupae 24hr  (252) pupae 2d postWPP  (332) pupae 3d postWPP  (1506) pupae 4d postWPP  (509) adult male 01day    58 adult male 05day    67 adult male 30day    50 adult female 01day    12 adult female 05day    0 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    124 embryo 02-04hr    54 embryo 04-06hr    48 embryo 06-08hr    60 embryo 08-10hr    160 embryo 10-12hr    110 embryo 12-14hr    130 embryo 14-16hr  (6409) embryo 16-18hr  (37902) embryo 18-20hr  (27986) embryo 20-22hr    406 embryo 22-24hr    539 larva L1    289 larva L2  (15704) larva L3 12hr old  (13324) larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    28 white prepupae new    19 white prepupae 12hr    1190 white prepupae 24hr    252 pupae 2d postWPP    332 pupae 3d postWPP  1506 pupae 4d postWPP    509 adult male 01day    58 adult male 05day    67 adult male 30day    50 adult female 01day    12 adult female 05day    0 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    124 embryo 02-04hr    54 embryo 04-06hr    48 embryo 06-08hr    60 embryo 08-10hr    160 embryo 10-12hr    110 embryo 12-14hr    130 embryo 14-16hr    6409 embryo 16-18hr  (37902) embryo 18-20hr  (27986) embryo 20-22hr    406 embryo 22-24hr    539 larva L1    289 larva L2  15704 larva L3 12hr old  13324 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    28 white prepupae new    19 white prepupae 12hr    1190 white prepupae 24hr    252 pupae 2d postWPP    332 pupae 3d postWPP    1506 pupae 4d postWPP    509 adult male 01day    58 adult male 05day    67 adult male 30day    50 adult female 01day    12 adult female 05day    0 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    124 embryo 02-04hr    54 embryo 04-06hr    48 embryo 06-08hr    60 embryo 08-10hr    160 embryo 10-12hr    110 embryo 12-14hr    130 embryo 14-16hr    6409 embryo 16-18hr    37902 embryo 18-20hr    27986 embryo 20-22hr    406 embryo 22-24hr    539 larva L1    289 larva L2    15704 larva L3 12hr old    13324 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    28 white prepupae new    19 white prepupae 12hr    1190 white prepupae 24hr    252 pupae 2d postWPP    332 pupae 3d postWPP    1506 pupae 4d postWPP    509 adult male 01day    58 adult male 05day    67 adult male 30day    50 adult female 01day    12 adult female 05day    0 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0036592    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0036592 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0036592 expression level Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut no informative data Larval Hindgut    8 Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland    6.7 Larval Trachea    78.775 Larval Carcass no informative data Adult Head    9.1 Adult Eye    5.175 Adult Brain    9.5 Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules    9.3 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    8.05 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    8.3 Adult Testis    39 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut no informative data Larval Hindgut    8 Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland    6.7 Larval Trachea    78.775 Larval Carcass no informative data Adult Head    9.1 Adult Eye    5.175 Adult Brain    9.5 Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules    9.3 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    8.05 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    8.3 Adult Testis    39 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut no informative data Larval Hindgut    8 Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland    6.7 Larval Trachea    78.775 Larval Carcass no informative data Adult Head    9.1 Adult Eye    5.175 Adult Brain    9.5 Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules    9.3 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    8.05 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    8.3 Adult Testis    39 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut no informative data Larval Hindgut    8 Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland    6.7 Larval Trachea    78.775 Larval Carcass no informative data Adult Head    9.1 Adult Eye    5.175 Adult Brain    9.5 Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules    9.3 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    8.05 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    8.3 Adult Testis    39 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0036592 expression level Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut no informative data Larval Hindgut    8 Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland    6.7 Larval Trachea    78.775 Larval Carcass no informative data Adult Head    9.1 Adult Eye    5.175 Adult Brain    9.5 Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules    9.3 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    8.05 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    8.3 Adult Testis    39 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut no informative data Larval Hindgut    8 Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland    6.7 Larval Trachea    78.775 Larval Carcass no informative data Adult Head    9.1 Adult Eye    5.175 Adult Brain    9.5 Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules    9.3 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    8.05 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    8.3 Adult Testis    39 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut no informative data Larval Hindgut    8 Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland    6.7 Larval Trachea    78.775 Larval Carcass no informative data Adult Head    9.1 Adult Eye    5.175 Adult Brain    9.5 Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules    9.3 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    8.05 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    8.3 Adult Testis    39 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    4.925 Larval Midgut no informative data Larval Hindgut    8 Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland    6.7 Larval Trachea    78.775 Larval Carcass no informative data Adult Head    9.1 Adult Eye    5.175 Adult Brain    9.5 Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules    9.3 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    8.05 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    8.3 Adult Testis    39 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut no informative data Larval Hindgut     Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland     Larval Trachea     Larval Carcass no informative data Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules     Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart     Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary     Adult Testis     Adult Male Accessory Gland no informative data Adult Carcass no informative data FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    9.1   NA  Eye    5.175   NA  Brain    9.5   4.925  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    no informative data   NA  Crop    no informative data   no informative data  Midgut    no informative data   8  Hindgut    no informative data   no informative data  Malpighian Tubules    9.3   no informative data  Fat Body    no informative data   6.7  Salivary Gland    no informative data   NA  Heart    8.05   78.775  Trachea    NA   NA  VirginFemale Spermatheca    no informative data   NA  InseminatedFemale Spermatheca    no informative data   NA  Ovary    8.3   NA  Testis    39   NA  Male Accessory Gland    no informative data   no informative data  Carcass    no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_12
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036592 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13049-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG13049 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG13049GD2487 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 CG13049GD2487 Phenotype manifest in Allele mesothoracic tergum, with Scer\GAL4pnr-MD237 CG13049GD2487
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG13049 Class Mutagen Stocks Known lesion CG13049MB07761 1 --
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG13049 Class Mutagen Stocks Known lesion CG13049GD2487 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD2487} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap binary system Mi{ET1}CG13049MB07761 No
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
Golgi organization inferred from mutant phenotype (Kondylis et al., 2011)
Cellular Component
CV term Evidence References
Golgi apparatus inferred from direct assay (Kondylis et al., 2011)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG13049 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 65096 DroID - A comprehensive database of gene and protein interactions. • FBgn0036592 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39788
Orthologs
Genome-wide drosophilid orthologs	Dana\GF10304 Dere\GG13477 Dgri\GH15616 Dmoj\GI12664 Dsec\GM24426 Dsim\GD12496 Dvir\GJ12641
Curated drosophilid orthologs	Dpse\GA12003
Linkouts
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	27755 w1118; Mi{ET1}CG13049MB07761
VDRC	v5281 w1118; P{GD2487}v5281 v11010 w1118; P{GD2487}v11010
Genomic Clones ( 2 )
	BACR09I16 BACR23K02 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 39 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE26528
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	52865 58239 80913 108271 192107 192446 EC051947 EC053862 EC053965 EC054453 EC054955 EC055513 EC056116 EK179515 EK294925 EK295135 RP001011256 RP001012942 RP001013255 RP001016491 RP001017767 RP001022033 RP001022044 RP001022405 RP001027713 RP001033412 RP001033554 RP001034118 RP001037080 RP001040292 RP001045560 RP001048715 RP001052160 RP001053572 RP001055244 UUGC0320 UUGC0326 UUGC0630
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0036592 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39788
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG13049 BcDNA:RE26528 (FlyBase, 1996-)
Additional comments	Source for merge of CG13049 BcDNA:RE26528 was a shared cDNA (date:030728). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_140603 NM_168657 RefSeq (Proteins) • NP_648860 NP_730133 DDBJ / EMBL / GenBank • AAF49506 AAM12291 AAN11766 AY095198 BI228872 Entrez Gene - A searchable database of RefSeq genes. • 39788 UniProtKB/TrEMBL • Q8SWS3 Q9VV16
Other Crossreferences
Linkouts
	BioGRID - A database of protein and genetic interactions • 65096 DroID - A comprehensive database of gene and protein interactions. • FBgn0036592 DRSC - Results from RNAi screens. • FBgn0036592 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036592 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13049-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0036592 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39788 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39788 modMine - Data generated by the modENCODE project. • FBgn0036592
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	BcDNA:RE26528   CG13049 (Blanco et al., 2008, Kondylis et al., 2011)
Name Synonym
Secondary FlyBase IDs
	FBgn0062450
References ( 10 )
Research paper	Kondylis et al., 2011, PLoS ONE 6(2): e17173 Identification of ER Proteins Involved in the Functional Organisation of the Early Secretory Pathway in Drosophila Cells by a Targeted RNAi Screen. [FBrf0213167] Blanco et al., 2008, Genome Biol. 9(9): R134 Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila. [FBrf0207036] Borras, 2003, Genetics 163(2): 637--645 Transcription profiling in Drosophila eyes that overexpress the human glaucoma-associated trabecular meshwork-inducible glucocorticoid response protein/myocilin (TIGR/MYOC). [FBrf0157243]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Bellen, 2009.5.28, MB857859.xml MB857859.xml [FBrf0208089] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
FlyBase analysis	FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]