A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\CG9674

General Information
SymbolDmel\CG9674SpeciesD. melanogaster
NameAnnotation symbolCG9674
Feature typeprotein_coding_geneFlyBase IDFBgn0036663
Gene Model StatusCurrent Stock availability 12 publicly available
Genomic Location
Chromosome (arm)3LRecombination map
Cytogenetic map73C4-73D1Sequence location3L:16,780,673..16,800,831 [-]

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Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol Dmel\CG9674 (FBgn0036663). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: glutamate synthase (NADPH) activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: oxidation-reduction process; glutamate biosynthetic process. 14 alleles are reported. No phenotypic data is available. It has 7 annotated transcripts and 7 annotated polypeptides. Protein features are: Aldolase-type TIM barrel; Alpha-helical ferredoxin; Class II glutamine amidotransferase domain; Fumarate reductase, C-terminal; Glutamate synthase, NADH/NADPH, small subunit 1; Glutamate synthase, alpha subunit, C-terminal; Glutamate synthase, central-C; Glutamate synthase, central-N; Glutamate synthase, eukaryotic; Glutamine amidotransferase type 2 domain; NAD(P)-binding domain; Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed at stages throughout the larval period, during early pupal stages, in adult male stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult salivary gland, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval salivary gland, larval trachea, adult spermathecae, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1629048_s_at completely aligns to an exonic region common to each of the 4 FlyBase-annotated transcript isoforms of CG9674. Gene sequence location is 3L:16780673..16800831.

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Description
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FB2013_03
FB2013_02
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
73C4-73D1  
Limits computationally determined from genome sequence between P{PZ}Baldspot02281 and P{PZ}blot01658  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
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Please see the GBrowse view of Dmel\CG9674 for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0075345 FBtr0075343 FBtr0305915 FBtr0333608 FBtr0075341 FBtr0305916 FBtr0333609 FBtr0305912 FBtr0075344 FBtr0075328 FBtr0273320 FBtr0305913 FBpp0075104 FBpp0075102 FBpp0305786 FBpp0297082 FBpp0305785 FBpp0075100 FBpp0297083 FBpp0075103 FBpp0297079 FBpp0075087 FBti0125750 FBti0005604 FBti0078306 FBti0054029 FBti0056935 FBti0051666 FBti0058243 FBti0067773 FBti0029530 FBti0056492 FBti0056940 FBti0105919 FBti0033914 FBti0146237 FBti0069968 FBti0108845 FBti0109254 FBti0112765 FBti0011463 FBti0011375 FBti0021442 FBti0112700 FBti0029203 FBti0033828 FBti0070028 FBti0028022 FBti0106284 FBti0037034 FBti0111251 FBti0029807 FBti0146113 FBti0104749 FBti0103264 FBti0037479 FBti0035952 FBti0103076 FBti0103368 FBti0058080 FBti0052264 FBti0044732 FBti0143687
Comments on Gene Model
Gene model reviewed during 5.46
Gene model reviewed during 5.48
Low-frequency RNA-Seq exon junction(s) not annotated.
Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Gene model includes transcripts encoding non-overlapping portions of the full CDS.
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0075341
  6757
  2114
FBtr0075343
  3073
  915
FBtr0075344
  7543
  2114
FBtr0305915
  7282
  1164
FBtr0305916
  7465
  2115
FBtr0333608
  7436
  2115
FBtr0333609
  7274
  1164
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
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Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0075100  
232.1  
2114  
6.37  
FBpp0075102  
100.5  
915  
7.00  
FBpp0075103  
232.1  
2114  
6.37  
FBpp0297082  
128.0  
1164  
6.19  
FBpp0297083  
232.2  
2115  
6.37  
FBpp0305785  
232.2  
2115  
6.37  
FBpp0305786  
128.0  
1164  
6.19  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
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Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult salivary gland, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval salivary gland, larval trachea, adult spermathecae, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 661.35
Larval Midgut
 
 97.4
Larval Hindgut
 
 225
Larval Malpighian Tubules
 
 273.2
Larval Fat Body
 
 143.7
Larval Salivary Gland
 
 177.7
Larval Trachea
 
 232.5
Larval Carcass
 
 349.525
Adult Head
 
 878
Adult Eye
 
 1957.325
Adult Brain
 
 1295.6
Adult Thoracic-Abdominal Ganglion
 
 1700.4
Adult Crop
 
 512.2
Adult Midgut
 
 150.2
Adult Hindgut
 
 498.2
Adult Malpighian Tubules
 
 58.2
Adult Fat Body
 
 133.4
Adult Salivary Gland
 
 962.2
Adult Heart
 
 416.175
Adult VirginFemale Spermatheca
 
 130.2
Adult InseminatedFemale Spermatheca
 
 100.8
Adult Ovary
 
 54
Adult Testis
 
 70.5
Adult Male Accessory Gland
 
 904.8
Adult Carcass
 
 239.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (661.35)
Larval Midgut
 
 97.4
Larval Hindgut
 
 225
Larval Malpighian Tubules
 
 273.2
Larval Fat Body
 
 143.7
Larval Salivary Gland
 
 177.7
Larval Trachea
 
 232.5
Larval Carcass
 
 349.525
Adult Head
 (878)
Adult Eye
 (1957.325)
Adult Brain
 (1295.6)
Adult Thoracic-Abdominal Ganglion
 (1700.4)
Adult Crop
 512.2
Adult Midgut
 
 150.2
Adult Hindgut
 
 498.2
Adult Malpighian Tubules
 
 58.2
Adult Fat Body
 
 133.4
Adult Salivary Gland
 (962.2)
Adult Heart
 
 416.175
Adult VirginFemale Spermatheca
 
 130.2
Adult InseminatedFemale Spermatheca
 
 100.8
Adult Ovary
 
 54
Adult Testis
 
 70.5
Adult Male Accessory Gland
 (904.8)
Adult Carcass
 
 239.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 661.35
Larval Midgut
 
 97.4
Larval Hindgut
 
 225
Larval Malpighian Tubules
 
 273.2
Larval Fat Body
 
 143.7
Larval Salivary Gland
 
 177.7
Larval Trachea
 
 232.5
Larval Carcass
 
 349.525
Adult Head
 
 878
Adult Eye
 (1957.325)
Adult Brain
 (1295.6)
Adult Thoracic-Abdominal Ganglion
 (1700.4)
Adult Crop
 
 512.2
Adult Midgut
 
 150.2
Adult Hindgut
 
 498.2
Adult Malpighian Tubules
 
 58.2
Adult Fat Body
 
 133.4
Adult Salivary Gland
 
 962.2
Adult Heart
 
 416.175
Adult VirginFemale Spermatheca
 
 130.2
Adult InseminatedFemale Spermatheca
 
 100.8
Adult Ovary
 
 54
Adult Testis
 
 70.5
Adult Male Accessory Gland
 
 904.8
Adult Carcass
 
 239.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 661.35
Larval Midgut
 
 97.4
Larval Hindgut
 
 225
Larval Malpighian Tubules
 
 273.2
Larval Fat Body
 
 143.7
Larval Salivary Gland
 
 177.7
Larval Trachea
 
 232.5
Larval Carcass
 
 349.525
Adult Head
 
 878
Adult Eye
 
 1957.325
Adult Brain
 
 1295.6
Adult Thoracic-Abdominal Ganglion
 
 1700.4
Adult Crop
 
 512.2
Adult Midgut
 
 150.2
Adult Hindgut
 
 498.2
Adult Malpighian Tubules
 
 58.2
Adult Fat Body
 
 133.4
Adult Salivary Gland
 
 962.2
Adult Heart
 
 416.175
Adult VirginFemale Spermatheca
 
 130.2
Adult InseminatedFemale Spermatheca
 
 100.8
Adult Ovary
 
 54
Adult Testis
 
 70.5
Adult Male Accessory Gland
 
 904.8
Adult Carcass
 
 239.7
Expression Level Scale
 Very high 
log, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 661.35
Larval Midgut
 
 97.4
Larval Hindgut
 
 225
Larval Malpighian Tubules
 
 273.2
Larval Fat Body
 
 143.7
Larval Salivary Gland
 
 177.7
Larval Trachea
 
 232.5
Larval Carcass
 
 349.525
Adult Head
 
 878
Adult Eye
 
 1957.325
Adult Brain
 
 1295.6
Adult Thoracic-Abdominal Ganglion
 
 1700.4
Adult Crop
 
 512.2
Adult Midgut
 
 150.2
Adult Hindgut
 
 498.2
Adult Malpighian Tubules
 
 58.2
Adult Fat Body
 
 133.4
Adult Salivary Gland
 
 962.2
Adult Heart
 
 416.175
Adult VirginFemale Spermatheca
 
 130.2
Adult InseminatedFemale Spermatheca
 
 100.8
Adult Ovary
 
 54
Adult Testis
 
 70.5
Adult Male Accessory Gland
 
 904.8
Adult Carcass
 
 239.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 661.35
Larval Midgut
 
 97.4
Larval Hindgut
 
 225
Larval Malpighian Tubules
 
 273.2
Larval Fat Body
 
 143.7
Larval Salivary Gland
 
 177.7
Larval Trachea
 
 232.5
Larval Carcass
 
 349.525
Adult Head
 (878)
Adult Eye
 (1957.325)
Adult Brain
 (1295.6)
Adult Thoracic-Abdominal Ganglion
 (1700.4)
Adult Crop
 512.2
Adult Midgut
 
 150.2
Adult Hindgut
 
 498.2
Adult Malpighian Tubules
 
 58.2
Adult Fat Body
 
 133.4
Adult Salivary Gland
 (962.2)
Adult Heart
 
 416.175
Adult VirginFemale Spermatheca
 
 130.2
Adult InseminatedFemale Spermatheca
 
 100.8
Adult Ovary
 
 54
Adult Testis
 
 70.5
Adult Male Accessory Gland
 (904.8)
Adult Carcass
 
 239.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 661.35
Larval Midgut
 
 97.4
Larval Hindgut
 
 225
Larval Malpighian Tubules
 
 273.2
Larval Fat Body
 
 143.7
Larval Salivary Gland
 
 177.7
Larval Trachea
 
 232.5
Larval Carcass
 
 349.525
Adult Head
 
 878
Adult Eye
 (1957.325)
Adult Brain
 1295.6
Adult Thoracic-Abdominal Ganglion
 1700.4
Adult Crop
 
 512.2
Adult Midgut
 
 150.2
Adult Hindgut
 
 498.2
Adult Malpighian Tubules
 
 58.2
Adult Fat Body
 
 133.4
Adult Salivary Gland
 
 962.2
Adult Heart
 
 416.175
Adult VirginFemale Spermatheca
 
 130.2
Adult InseminatedFemale Spermatheca
 
 100.8
Adult Ovary
 
 54
Adult Testis
 
 70.5
Adult Male Accessory Gland
 
 904.8
Adult Carcass
 
 239.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 661.35
Larval Midgut
 
 97.4
Larval Hindgut
 
 225
Larval Malpighian Tubules
 
 273.2
Larval Fat Body
 
 143.7
Larval Salivary Gland
 
 177.7
Larval Trachea
 
 232.5
Larval Carcass
 
 349.525
Adult Head
 
 878
Adult Eye
 
 1957.325
Adult Brain
 
 1295.6
Adult Thoracic-Abdominal Ganglion
 
 1700.4
Adult Crop
 
 512.2
Adult Midgut
 
 150.2
Adult Hindgut
 
 498.2
Adult Malpighian Tubules
 
 58.2
Adult Fat Body
 
 133.4
Adult Salivary Gland
 
 962.2
Adult Heart
 
 416.175
Adult VirginFemale Spermatheca
 
 130.2
Adult InseminatedFemale Spermatheca
 
 100.8
Adult Ovary
 
 54
Adult Testis
 
 70.5
Adult Male Accessory Gland
 
 904.8
Adult Carcass
 
 239.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 878
 
NA 
Eye
 
 1957.325
 
NA 
Brain
 
 1295.6
 
661.35 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 1700.4
 
NA 
Crop
 
 512.2
 
97.4 
Midgut
 
 150.2
 
225 
Hindgut
 
 498.2
 
273.2 
Malpighian Tubules
 
 58.2
 
143.7 
Fat Body
 
 133.4
 
177.7 
Salivary Gland
 
 962.2
 
NA 
Heart
 
 416.175
 
232.5 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 130.2
 
NA 
InseminatedFemale Spermatheca
 
 100.8
 
NA 
Ovary
 
 54
 
NA 
Testis
 
 70.5
 
NA 
Male Accessory Gland
 
 904.8
 
349.525 
Carcass
 
 239.7

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 17
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 
 27
head, virgin 1-day female
 
 56
head, virgin 4-day female
 
 60
head, virgin 20-day female
 
 77
head, mated 1-day female
 
 55
head, mated 4-day female
 
 55
head, mated 20-day female
 
 65
head, mated 1-day male
 
 108
head, mated 4-day male
 
 91
head, mated 20-day male
 
 118
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 18
digestive system, 1-day adult
 
 19
digestive system, 4-day adult
 
 22
digestive system, 20-day adult
 
 31
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 4
fat body, pupae P8
 
 12
carcass, larvae L3 wandering
 
 31
carcass, 1-day adult
 
 20
carcass, 4-day adult
 
 24
carcass, 20-day adult
 
 25
ovary, virgin 4-day female
 
 14
ovary, mated 4-day female
 
 11
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 14
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 17
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 (27)
head, virgin 1-day female
 (56)
head, virgin 4-day female
 (60)
head, virgin 20-day female
 (77)
head, mated 1-day female
 (55)
head, mated 4-day female
 (55)
head, mated 20-day female
 (65)
head, mated 1-day male
 (108)
head, mated 4-day male
 (91)
head, mated 20-day male
 (118)
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 18
digestive system, 1-day adult
 
 19
digestive system, 4-day adult
 
 22
digestive system, 20-day adult
 (31)
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 4
fat body, pupae P8
 
 12
carcass, larvae L3 wandering
 (31)
carcass, 1-day adult
 
 20
carcass, 4-day adult
 
 24
carcass, 20-day adult
 
 25
ovary, virgin 4-day female
 
 14
ovary, mated 4-day female
 
 11
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 14
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 17
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 
 27
head, virgin 1-day female
 
 56
head, virgin 4-day female
 
 60
head, virgin 20-day female
 
 77
head, mated 1-day female
 
 55
head, mated 4-day female
 
 55
head, mated 20-day female
 
 65
head, mated 1-day male
 (108)
head, mated 4-day male
 
 91
head, mated 20-day male
 (118)
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 18
digestive system, 1-day adult
 
 19
digestive system, 4-day adult
 
 22
digestive system, 20-day adult
 
 31
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 4
fat body, pupae P8
 
 12
carcass, larvae L3 wandering
 
 31
carcass, 1-day adult
 
 20
carcass, 4-day adult
 
 24
carcass, 20-day adult
 
 25
ovary, virgin 4-day female
 
 14
ovary, mated 4-day female
 
 11
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 14
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 17
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 
 27
head, virgin 1-day female
 
 56
head, virgin 4-day female
 
 60
head, virgin 20-day female
 
 77
head, mated 1-day female
 
 55
head, mated 4-day female
 
 55
head, mated 20-day female
 
 65
head, mated 1-day male
 
 108
head, mated 4-day male
 
 91
head, mated 20-day male
 
 118
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 18
digestive system, 1-day adult
 
 19
digestive system, 4-day adult
 
 22
digestive system, 20-day adult
 
 31
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 4
fat body, pupae P8
 
 12
carcass, larvae L3 wandering
 
 31
carcass, 1-day adult
 
 20
carcass, 4-day adult
 
 24
carcass, 20-day adult
 
 25
ovary, virgin 4-day female
 
 14
ovary, mated 4-day female
 
 11
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 14
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 17
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 
 27
head, virgin 1-day female
 
 56
head, virgin 4-day female
 
 60
head, virgin 20-day female
 
 77
head, mated 1-day female
 
 55
head, mated 4-day female
 
 55
head, mated 20-day female
 
 65
head, mated 1-day male
 
 108
head, mated 4-day male
 
 91
head, mated 20-day male
 
 118
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 18
digestive system, 1-day adult
 
 19
digestive system, 4-day adult
 
 22
digestive system, 20-day adult
 
 31
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 4
fat body, pupae P8
 
 12
carcass, larvae L3 wandering
 
 31
carcass, 1-day adult
 
 20
carcass, 4-day adult
 
 24
carcass, 20-day adult
 
 25
ovary, virgin 4-day female
 
 14
ovary, mated 4-day female
 
 11
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 14
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 17
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 27
head, virgin 1-day female
 (56)
head, virgin 4-day female
 (60)
head, virgin 20-day female
 (77)
head, mated 1-day female
 (55)
head, mated 4-day female
 (55)
head, mated 20-day female
 (65)
head, mated 1-day male
 (108)
head, mated 4-day male
 (91)
head, mated 20-day male
 (118)
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 18
digestive system, 1-day adult
 
 19
digestive system, 4-day adult
 
 22
digestive system, 20-day adult
 31
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 4
fat body, pupae P8
 
 12
carcass, larvae L3 wandering
 31
carcass, 1-day adult
 
 20
carcass, 4-day adult
 
 24
carcass, 20-day adult
 
 25
ovary, virgin 4-day female
 
 14
ovary, mated 4-day female
 
 11
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 14
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 17
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 
 27
head, virgin 1-day female
 
 56
head, virgin 4-day female
 
 60
head, virgin 20-day female
 
 77
head, mated 1-day female
 
 55
head, mated 4-day female
 
 55
head, mated 20-day female
 
 65
head, mated 1-day male
 108
head, mated 4-day male
 
 91
head, mated 20-day male
 118
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 18
digestive system, 1-day adult
 
 19
digestive system, 4-day adult
 
 22
digestive system, 20-day adult
 
 31
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 4
fat body, pupae P8
 
 12
carcass, larvae L3 wandering
 
 31
carcass, 1-day adult
 
 20
carcass, 4-day adult
 
 24
carcass, 20-day adult
 
 25
ovary, virgin 4-day female
 
 14
ovary, mated 4-day female
 
 11
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 14
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 17
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 
 27
head, virgin 1-day female
 
 56
head, virgin 4-day female
 
 60
head, virgin 20-day female
 
 77
head, mated 1-day female
 
 55
head, mated 4-day female
 
 55
head, mated 20-day female
 
 65
head, mated 1-day male
 
 108
head, mated 4-day male
 
 91
head, mated 20-day male
 
 118
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 18
digestive system, 1-day adult
 
 19
digestive system, 4-day adult
 
 22
digestive system, 20-day adult
 
 31
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 4
fat body, pupae P8
 
 12
carcass, larvae L3 wandering
 
 31
carcass, 1-day adult
 
 20
carcass, 4-day adult
 
 24
carcass, 20-day adult
 
 25
ovary, virgin 4-day female
 
 14
ovary, mated 4-day female
 
 11
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 14
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed at stages throughout the larval period, during early pupal stages, in adult male stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 14
embryo 02-04hr
 
 3
embryo 04-06hr
 
 3
embryo 06-08hr
 
 13
embryo 08-10hr
 
 27
embryo 10-12hr
 
 37
embryo 12-14hr
 
 31
embryo 14-16hr
 
 25
embryo 16-18hr
 
 25
embryo 18-20hr
 
 36
embryo 20-22hr
 
 42
embryo 22-24hr
 
 50
larva L1
 
 56
larva L2
 
 28
larva L3 12hr old
 
 24
larva L3 puffstage 1-2
 
 45
larva L3 puffstage 3-6
 
 67
larva L3 puffstage 7-9
 
 44
white prepupae new
 
 24
white prepupae 12hr
 
 52
white prepupae 24hr
 
 64
pupae 2d postWPP
 
 35
pupae 3d postWPP
 
 26
pupae 4d postWPP
 
 34
adult male 01day
 
 70
adult male 05day
 
 77
adult male 30day
 
 80
adult female 01day
 
 47
adult female 05day
 
 31
adult female 30day
 
 28
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 14
embryo 02-04hr
 
 3
embryo 04-06hr
 
 3
embryo 06-08hr
 
 13
embryo 08-10hr
 (27)
embryo 10-12hr
 (37)
embryo 12-14hr
 (31)
embryo 14-16hr
 
 25
embryo 16-18hr
 
 25
embryo 18-20hr
 (36)
embryo 20-22hr
 (42)
embryo 22-24hr
 (50)
larva L1
 (56)
larva L2
 (28)
larva L3 12hr old
 
 24
larva L3 puffstage 1-2
 (45)
larva L3 puffstage 3-6
 (67)
larva L3 puffstage 7-9
 (44)
white prepupae new
 
 24
white prepupae 12hr
 (52)
white prepupae 24hr
 (64)
pupae 2d postWPP
 (35)
pupae 3d postWPP
 26
pupae 4d postWPP
 (34)
adult male 01day
 (70)
adult male 05day
 (77)
adult male 30day
 (80)
adult female 01day
 (47)
adult female 05day
 (31)
adult female 30day
 (28)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 14
embryo 02-04hr
 
 3
embryo 04-06hr
 
 3
embryo 06-08hr
 
 13
embryo 08-10hr
 
 27
embryo 10-12hr
 
 37
embryo 12-14hr
 
 31
embryo 14-16hr
 
 25
embryo 16-18hr
 
 25
embryo 18-20hr
 
 36
embryo 20-22hr
 
 42
embryo 22-24hr
 
 50
larva L1
 
 56
larva L2
 
 28
larva L3 12hr old
 
 24
larva L3 puffstage 1-2
 
 45
larva L3 puffstage 3-6
 
 67
larva L3 puffstage 7-9
 
 44
white prepupae new
 
 24
white prepupae 12hr
 
 52
white prepupae 24hr
 
 64
pupae 2d postWPP
 
 35
pupae 3d postWPP
 
 26
pupae 4d postWPP
 
 34
adult male 01day
 
 70
adult male 05day
 
 77
adult male 30day
 
 80
adult female 01day
 
 47
adult female 05day
 
 31
adult female 30day
 
 28
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 14
embryo 02-04hr
 
 3
embryo 04-06hr
 
 3
embryo 06-08hr
 
 13
embryo 08-10hr
 
 27
embryo 10-12hr
 
 37
embryo 12-14hr
 
 31
embryo 14-16hr
 
 25
embryo 16-18hr
 
 25
embryo 18-20hr
 
 36
embryo 20-22hr
 
 42
embryo 22-24hr
 
 50
larva L1
 
 56
larva L2
 
 28
larva L3 12hr old
 
 24
larva L3 puffstage 1-2
 
 45
larva L3 puffstage 3-6
 
 67
larva L3 puffstage 7-9
 
 44
white prepupae new
 
 24
white prepupae 12hr
 
 52
white prepupae 24hr
 
 64
pupae 2d postWPP
 
 35
pupae 3d postWPP
 
 26
pupae 4d postWPP
 
 34
adult male 01day
 
 70
adult male 05day
 
 77
adult male 30day
 
 80
adult female 01day
 
 47
adult female 05day
 
 31
adult female 30day
 
 28
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 14
embryo 02-04hr
 
 3
embryo 04-06hr
 
 3
embryo 06-08hr
 
 13
embryo 08-10hr
 
 27
embryo 10-12hr
 
 37
embryo 12-14hr
 
 31
embryo 14-16hr
 
 25
embryo 16-18hr
 
 25
embryo 18-20hr
 
 36
embryo 20-22hr
 
 42
embryo 22-24hr
 
 50
larva L1
 
 56
larva L2
 
 28
larva L3 12hr old
 
 24
larva L3 puffstage 1-2
 
 45
larva L3 puffstage 3-6
 
 67
larva L3 puffstage 7-9
 
 44
white prepupae new
 
 24
white prepupae 12hr
 
 52
white prepupae 24hr
 
 64
pupae 2d postWPP
 
 35
pupae 3d postWPP
 
 26
pupae 4d postWPP
 
 34
adult male 01day
 
 70
adult male 05day
 
 77
adult male 30day
 
 80
adult female 01day
 
 47
adult female 05day
 
 31
adult female 30day
 
 28
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 14
embryo 02-04hr
 
 3
embryo 04-06hr
 
 3
embryo 06-08hr
 
 13
embryo 08-10hr
 27
embryo 10-12hr
 (37)
embryo 12-14hr
 31
embryo 14-16hr
 
 25
embryo 16-18hr
 
 25
embryo 18-20hr
 (36)
embryo 20-22hr
 (42)
embryo 22-24hr
 (50)
larva L1
 (56)
larva L2
 28
larva L3 12hr old
 
 24
larva L3 puffstage 1-2
 (45)
larva L3 puffstage 3-6
 (67)
larva L3 puffstage 7-9
 (44)
white prepupae new
 
 24
white prepupae 12hr
 (52)
white prepupae 24hr
 (64)
pupae 2d postWPP
 (35)
pupae 3d postWPP
 26
pupae 4d postWPP
 (34)
adult male 01day
 (70)
adult male 05day
 (77)
adult male 30day
 (80)
adult female 01day
 (47)
adult female 05day
 31
adult female 30day
 28
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 14
embryo 02-04hr
 
 3
embryo 04-06hr
 
 3
embryo 06-08hr
 
 13
embryo 08-10hr
 
 27
embryo 10-12hr
 
 37
embryo 12-14hr
 
 31
embryo 14-16hr
 
 25
embryo 16-18hr
 
 25
embryo 18-20hr
 
 36
embryo 20-22hr
 
 42
embryo 22-24hr
 
 50
larva L1
 
 56
larva L2
 
 28
larva L3 12hr old
 
 24
larva L3 puffstage 1-2
 
 45
larva L3 puffstage 3-6
 
 67
larva L3 puffstage 7-9
 
 44
white prepupae new
 
 24
white prepupae 12hr
 
 52
white prepupae 24hr
 
 64
pupae 2d postWPP
 
 35
pupae 3d postWPP
 
 26
pupae 4d postWPP
 
 34
adult male 01day
 
 70
adult male 05day
 
 77
adult male 30day
 
 80
adult female 01day
 
 47
adult female 05day
 
 31
adult female 30day
 
 28
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 14
embryo 02-04hr
 
 3
embryo 04-06hr
 
 3
embryo 06-08hr
 
 13
embryo 08-10hr
 
 27
embryo 10-12hr
 
 37
embryo 12-14hr
 
 31
embryo 14-16hr
 
 25
embryo 16-18hr
 
 25
embryo 18-20hr
 
 36
embryo 20-22hr
 
 42
embryo 22-24hr
 
 50
larva L1
 
 56
larva L2
 
 28
larva L3 12hr old
 
 24
larva L3 puffstage 1-2
 
 45
larva L3 puffstage 3-6
 
 67
larva L3 puffstage 7-9
 
 44
white prepupae new
 
 24
white prepupae 12hr
 
 52
white prepupae 24hr
 
 64
pupae 2d postWPP
 
 35
pupae 3d postWPP
 
 26
pupae 4d postWPP
 
 34
adult male 01day
 
 70
adult male 05day
 
 77
adult male 30day
 
 80
adult female 01day
 
 47
adult female 05day
 
 31
adult female 30day
 
 28
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 26
Schneider line 2 Sg4
 
 30
embryonic 1182-4H
 
 29
embryonic GM2
 
 38
embryonic Kc167
 
 47
embryonic S1
 
 34
embryonic S3
 
 54
leg disc CME L1
 
 20
wing disc CME-W2
 
 16
wing disc ML-DmD8
 
 17
wing disc ML-DmD9
 
 27
wing disc ML-DmD16-c3
 
 11
wing disc ML-DmD21
 
 5
wing disc ML-DmD32
 
 11
haltere disc ML-DmD17-c3
 
 53
eye-antennal disc ML-DmD11
 
 44
antennal disc ML-DmD20-c5
 
 11
mixed discs ML-DmD4-c1
 
 10
CNS ML-DmBG1-c1
 
 30
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 38
ovary fGS/OSS
 
 54
ovary OSC
 
 6
ovary OSS
 
 23
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 26
Schneider line 2 Sg4
 (30)
embryonic 1182-4H
 (29)
embryonic GM2
 (38)
embryonic Kc167
 (47)
embryonic S1
 (34)
embryonic S3
 (54)
leg disc CME L1
 
 20
wing disc CME-W2
 
 16
wing disc ML-DmD8
 
 17
wing disc ML-DmD9
 (27)
wing disc ML-DmD16-c3
 
 11
wing disc ML-DmD21
 
 5
wing disc ML-DmD32
 
 11
haltere disc ML-DmD17-c3
 (53)
eye-antennal disc ML-DmD11
 (44)
antennal disc ML-DmD20-c5
 
 11
mixed discs ML-DmD4-c1
 
 10
CNS ML-DmBG1-c1
 (30)
CNS ML-DmBG2-c2
 26
tumorous blood cells mbn2
 (38)
ovary fGS/OSS
 (54)
ovary OSC
 
 6
ovary OSS
 
 23
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 26
Schneider line 2 Sg4
 
 30
embryonic 1182-4H
 
 29
embryonic GM2
 
 38
embryonic Kc167
 
 47
embryonic S1
 
 34
embryonic S3
 
 54
leg disc CME L1
 
 20
wing disc CME-W2
 
 16
wing disc ML-DmD8
 
 17
wing disc ML-DmD9
 
 27
wing disc ML-DmD16-c3
 
 11
wing disc ML-DmD21
 
 5
wing disc ML-DmD32
 
 11
haltere disc ML-DmD17-c3
 
 53
eye-antennal disc ML-DmD11
 
 44
antennal disc ML-DmD20-c5
 
 11
mixed discs ML-DmD4-c1
 
 10
CNS ML-DmBG1-c1
 
 30
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 38
ovary fGS/OSS
 
 54
ovary OSC
 
 6
ovary OSS
 
 23
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 26
Schneider line 2 Sg4
 
 30
embryonic 1182-4H
 
 29
embryonic GM2
 
 38
embryonic Kc167
 
 47
embryonic S1
 
 34
embryonic S3
 
 54
leg disc CME L1
 
 20
wing disc CME-W2
 
 16
wing disc ML-DmD8
 
 17
wing disc ML-DmD9
 
 27
wing disc ML-DmD16-c3
 
 11
wing disc ML-DmD21
 
 5
wing disc ML-DmD32
 
 11
haltere disc ML-DmD17-c3
 
 53
eye-antennal disc ML-DmD11
 
 44
antennal disc ML-DmD20-c5
 
 11
mixed discs ML-DmD4-c1
 
 10
CNS ML-DmBG1-c1
 
 30
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 38
ovary fGS/OSS
 
 54
ovary OSC
 
 6
ovary OSS
 
 23
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 26
Schneider line 2 Sg4
 
 30
embryonic 1182-4H
 
 29
embryonic GM2
 
 38
embryonic Kc167
 
 47
embryonic S1
 
 34
embryonic S3
 
 54
leg disc CME L1
 
 20
wing disc CME-W2
 
 16
wing disc ML-DmD8
 
 17
wing disc ML-DmD9
 
 27
wing disc ML-DmD16-c3
 
 11
wing disc ML-DmD21
 
 5
wing disc ML-DmD32
 
 11
haltere disc ML-DmD17-c3
 
 53
eye-antennal disc ML-DmD11
 
 44
antennal disc ML-DmD20-c5
 
 11
mixed discs ML-DmD4-c1
 
 10
CNS ML-DmBG1-c1
 
 30
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 38
ovary fGS/OSS
 
 54
ovary OSC
 
 6
ovary OSS
 
 23
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 26
Schneider line 2 Sg4
 30
embryonic 1182-4H
 29
embryonic GM2
 (38)
embryonic Kc167
 (47)
embryonic S1
 (34)
embryonic S3
 (54)
leg disc CME L1
 
 20
wing disc CME-W2
 
 16
wing disc ML-DmD8
 
 17
wing disc ML-DmD9
 27
wing disc ML-DmD16-c3
 
 11
wing disc ML-DmD21
 
 5
wing disc ML-DmD32
 
 11
haltere disc ML-DmD17-c3
 (53)
eye-antennal disc ML-DmD11
 (44)
antennal disc ML-DmD20-c5
 
 11
mixed discs ML-DmD4-c1
 
 10
CNS ML-DmBG1-c1
 30
CNS ML-DmBG2-c2
 26
tumorous blood cells mbn2
 (38)
ovary fGS/OSS
 (54)
ovary OSC
 
 6
ovary OSS
 
 23
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 26
Schneider line 2 Sg4
 
 30
embryonic 1182-4H
 
 29
embryonic GM2
 
 38
embryonic Kc167
 
 47
embryonic S1
 
 34
embryonic S3
 
 54
leg disc CME L1
 
 20
wing disc CME-W2
 
 16
wing disc ML-DmD8
 
 17
wing disc ML-DmD9
 
 27
wing disc ML-DmD16-c3
 
 11
wing disc ML-DmD21
 
 5
wing disc ML-DmD32
 
 11
haltere disc ML-DmD17-c3
 
 53
eye-antennal disc ML-DmD11
 
 44
antennal disc ML-DmD20-c5
 
 11
mixed discs ML-DmD4-c1
 
 10
CNS ML-DmBG1-c1
 
 30
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 38
ovary fGS/OSS
 
 54
ovary OSC
 
 6
ovary OSS
 
 23
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 26
Schneider line 2 Sg4
 
 30
embryonic 1182-4H
 
 29
embryonic GM2
 
 38
embryonic Kc167
 
 47
embryonic S1
 
 34
embryonic S3
 
 54
leg disc CME L1
 
 20
wing disc CME-W2
 
 16
wing disc ML-DmD8
 
 17
wing disc ML-DmD9
 
 27
wing disc ML-DmD16-c3
 
 11
wing disc ML-DmD21
 
 5
wing disc ML-DmD32
 
 11
haltere disc ML-DmD17-c3
 
 53
eye-antennal disc ML-DmD11
 
 44
antennal disc ML-DmD20-c5
 
 11
mixed discs ML-DmD4-c1
 
 10
CNS ML-DmBG1-c1
 
 30
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 38
ovary fGS/OSS
 
 54
ovary OSC
 
 6
ovary OSS
 
 23
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 11
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 9
Cadmium 50 mM 12 hrs, larvae L3
 
 8
Cadmium 50 mM 48 hrs, 4-day adult
 
 19
Cadmium 100 mM 48 hrs, 4-day adult
 
 39
Copper 0.5 mM 12 hrs, larvae L3
 
 12
Copper 15 mM 48 hrs, 4-day adult
 
 19
Zinc 5 mM 12 hrs, larvae L3
 
 8
Zinc 4.5 mM 48 hrs, 4-day adult
 
 25
Ethanol 2.5% 3 hrs, larvae L3
 
 44
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 7
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 17
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 38
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 93
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 10
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 11
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 9
Cadmium 50 mM 12 hrs, larvae L3
 
 8
Cadmium 50 mM 48 hrs, 4-day adult
 
 19
Cadmium 100 mM 48 hrs, 4-day adult
 (39)
Copper 0.5 mM 12 hrs, larvae L3
 
 12
Copper 15 mM 48 hrs, 4-day adult
 
 19
Zinc 5 mM 12 hrs, larvae L3
 
 8
Zinc 4.5 mM 48 hrs, 4-day adult
 
 25
Ethanol 2.5% 3 hrs, larvae L3
 (44)
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 7
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 17
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (38)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 (35)
Paraquat 10 mM 48 hrs, 4-day adult
 (93)
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 10
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 11
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 9
Cadmium 50 mM 12 hrs, larvae L3
 
 8
Cadmium 50 mM 48 hrs, 4-day adult
 
 19
Cadmium 100 mM 48 hrs, 4-day adult
 
 39
Copper 0.5 mM 12 hrs, larvae L3
 
 12
Copper 15 mM 48 hrs, 4-day adult
 
 19
Zinc 5 mM 12 hrs, larvae L3
 
 8
Zinc 4.5 mM 48 hrs, 4-day adult
 
 25
Ethanol 2.5% 3 hrs, larvae L3
 
 44
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 7
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 17
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 38
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 93
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 10
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 11
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 9
Cadmium 50 mM 12 hrs, larvae L3
 
 8
Cadmium 50 mM 48 hrs, 4-day adult
 
 19
Cadmium 100 mM 48 hrs, 4-day adult
 
 39
Copper 0.5 mM 12 hrs, larvae L3
 
 12
Copper 15 mM 48 hrs, 4-day adult
 
 19
Zinc 5 mM 12 hrs, larvae L3
 
 8
Zinc 4.5 mM 48 hrs, 4-day adult
 
 25
Ethanol 2.5% 3 hrs, larvae L3
 
 44
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 7
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 17
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 38
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 93
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 10
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 11
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 9
Cadmium 50 mM 12 hrs, larvae L3
 
 8
Cadmium 50 mM 48 hrs, 4-day adult
 
 19
Cadmium 100 mM 48 hrs, 4-day adult
 
 39
Copper 0.5 mM 12 hrs, larvae L3
 
 12
Copper 15 mM 48 hrs, 4-day adult
 
 19
Zinc 5 mM 12 hrs, larvae L3
 
 8
Zinc 4.5 mM 48 hrs, 4-day adult
 
 25
Ethanol 2.5% 3 hrs, larvae L3
 
 44
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 7
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 17
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 38
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 93
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 10
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 11
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 9
Cadmium 50 mM 12 hrs, larvae L3
 
 8
Cadmium 50 mM 48 hrs, 4-day adult
 
 19
Cadmium 100 mM 48 hrs, 4-day adult
 (39)
Copper 0.5 mM 12 hrs, larvae L3
 
 12
Copper 15 mM 48 hrs, 4-day adult
 
 19
Zinc 5 mM 12 hrs, larvae L3
 
 8
Zinc 4.5 mM 48 hrs, 4-day adult
 
 25
Ethanol 2.5% 3 hrs, larvae L3
 (44)
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 7
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 17
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (38)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 (35)
Paraquat 10 mM 48 hrs, 4-day adult
 (93)
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 10
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 11
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 9
Cadmium 50 mM 12 hrs, larvae L3
 
 8
Cadmium 50 mM 48 hrs, 4-day adult
 
 19
Cadmium 100 mM 48 hrs, 4-day adult
 
 39
Copper 0.5 mM 12 hrs, larvae L3
 
 12
Copper 15 mM 48 hrs, 4-day adult
 
 19
Zinc 5 mM 12 hrs, larvae L3
 
 8
Zinc 4.5 mM 48 hrs, 4-day adult
 
 25
Ethanol 2.5% 3 hrs, larvae L3
 
 44
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 7
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 17
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 38
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 93
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 10
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 11
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 9
Cadmium 50 mM 12 hrs, larvae L3
 
 8
Cadmium 50 mM 48 hrs, 4-day adult
 
 19
Cadmium 100 mM 48 hrs, 4-day adult
 
 39
Copper 0.5 mM 12 hrs, larvae L3
 
 12
Copper 15 mM 48 hrs, 4-day adult
 
 19
Zinc 5 mM 12 hrs, larvae L3
 
 8
Zinc 4.5 mM 48 hrs, 4-day adult
 
 25
Ethanol 2.5% 3 hrs, larvae L3
 
 44
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 7
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 17
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 38
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 93
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 10
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 12 )
For All Classical Alleles Show

Allele of CG9674ClassMutagenStocksKnown lesion
CG96745-HA-1498
1 --
CG9674d00385
1 --
CG9674d07815
1 --
CG9674d097391 --
CG9674d097641 --
CG9674f042481 --
CG9674MB04992
1 --
CG9674MI04357
1 --
CG9674NP0771
1 --
CG9674PL002821 --
CG9674d084750 --
CG9674f046430 --
hide Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show

Allele of CG9674ClassMutagenStocksKnown lesion
CG9674GD142851 Yes
CG9674KK1051401 Yes
hide Aneuploid Aberrations
Disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
UAS construct
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap binary system
hide Gene Ontology: Function, Process & Cellular Component ( 8 unique terms )
hide Terms Based on Experimental Evidence ( 0 terms )
hide Terms Based on Predictions or Assertions ( 8 terms )
Molecular Function
CV term
References
inferred from electronic annotation with InterPro:IPR012220
inferred from sequence or structural similarity with UniProtKB:Q03460
inferred from electronic annotation with InterPro:IPR012220
Biological Process
CV term
References
Cellular Component ( 0 terms)
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
protein-protein
Interacting group
Assay
References
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
CG9674 allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
hide OrthoDB Orthologs (34) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG6T78NK)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
Y
 
Drosophila sechellia
 
 
 
Drosophila erecta
 
Y
 
Drosophila yakuba
 
Y
 
Drosophila ananassae
 
Y
 
Drosophila pseudoobscura pseudoobscura
 
Y
 
Drosophila persimilis
 
 
 
Drosophila willistoni
 
Y
 
Drosophila virilis
 
Y
 
Drosophila mojavensis
 
Y
 
Drosophila grimshawi
 
Y
 
hideOrthologs in non-Drosophila Dipterans (EOG6BP1KP)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Aedes aegypti
Yellow fever mosquito 
 
Anopheles gambiae
Malaria mosquito 
 
Culex quinquefasciatus
Southern house mosquito 
 
hideOrthologs in non-Dipteran Insects (EOG6TMPWV)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\GB47100
 
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG003713
 
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\AECH10177
 
Atta cephalotes
Leafcutter ant 
Acep\ACEP20733
 
Camponotus floridanus
Florida carpenter ant 
Cflo\CFLO15990
 
Harpegnathos saltator
Jerdons jumping ant 
Hsal\HSAL12509
 
Linepithema humile
Argentine ant 
Lhum\LH23379
 
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB15574
 
Solenopsis invicta
Red fire ant 
Sinv\SINV10505
 
Acyrthosiphon pisum
Pea aphid 
 
Bombyx mori
Silkmoth 
 
Pediculus humanus
Human body louse 
 
Tribolium castaneum
Red flour beetle 
 
hideOrthologs in non-Insect Arthropods (EOG6MSBCZ)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Daphnia pulex
Water flea 
 
Ixodes scapularis
Deer tick 
 
hideOrthologs in non-Arthropod Metazoa (EOG6KQ63G)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Caenorhabditis elegans
Nematode 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
hide Human Orthologs (0)
Gene
OMIM
HGNC
hideAAA Orthologs (9) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila simulans
Drosophila erecta
Drosophila yakuba
Drosophila ananassae
Drosophila pseudoobscura pseudoobscura
Drosophila willistoni
Drosophila virilis
Drosophila mojavensis
Drosophila grimshawi
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 12 )
Bloomington
Harvard
Kyoto
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 99 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
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DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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Entrez Gene - A searchable database of RefSeq genes.
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InterPro domains - A database of protein families, domains, and functional sites
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BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
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Willoughby et al., 2013, Dis. Model Mech. 6(2): 521--529
An in vivo large-scale chemical screening platform using Drosophila for anti-cancer drug discovery. [FBrf0221096]