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Gene Dmel\CG4306

General Information
Symbol	Dmel\CG4306	Species	D. melanogaster
Name		Annotation symbol	CG4306
Feature type	protein_coding_gene	FlyBase ID	FBgn0036787
Gene Model Status	Current	Stock availability	None publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	75C7-75C7	Sequence location	3L:18,455,057..18,456,263 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG4306 (FBgn0036787). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: gamma-glutamylcyclotransferase activity. There is experimental evidence that it is involved in the biological process: hemolymph coagulation. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Butirosin biosynthesis, BtrG-like; Gamma-glutamylcyclotransferase. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 06-18 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval fat body. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult testis, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1627007_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG4306. Gene sequence location is 3L:18455057..18456263.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 75C7-75C7   Limits computationally determined from genome sequence between P{PZ}W05014 and P{lacW}l(3)j14E7j14E7
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG4306 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG4306-RA FBtr0075117  NM_140781   1029   220
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG4306-PA   FBpp0074883   24.4   220   6.67     NP_649038   AAF49262
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Gamma-glutamylcyclotransferase (IPR017939) Butirosin biosynthesis, BtrG-like (IPR013024)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA142181   AA142182   AA246432   AE014296 AAF49262   AY071274 AAL48896   AY084153 AAL89891   BG637825   BI234686   BI236264   CO184076   CO184629   CO192161   CO262671   CO263928   CO263982   CO291383   CO311725   DN154322   EC060814   EC060839   EC070610   EC213668   EC237712   EC242526   GH749891   GH753341   GH755349   GH755568   GH757799   GH770144   GH776967   GH777217   GH781241   GH801410   GH802020   GH809051   GH813698   GH813797   GH817252   GH820386   GH821329   GH821899   GH822510   GH822917   GH827054   GH827460   GH831668   GH831874   GH836117   GH836170   GH840787   GH841564   GH841812   GH843399   GH845330   GH846927   GH848867   GH851894   GH852323   GH853647   GH854247   GH855864   GH856704   GH857151   GH859283   GH859354   GH859915   GH861704   GH862612   GH866608   GH869914   GH871608   GH874491   GH877087   GH879097   GH880608   GH882759   GH883127   GH886835   GH896524   GH896873   GH898882   GH902715   GH907054   GH908683   GH910985   GH915157   GH922751   GH924272   GH930567   GH931379   GH931689   GH932316   GH936703
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VVP9
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
expression microarray Stage Tissue/Position (including subcellular localization) Reference adult stage   eye   (Xu et al., 2004) in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 11 -- 12   yolk nucleus   (Fisher et al., 2012) embryonic stage 13 -- 16   yolk nucleus   (Fisher et al., 2012)
Additional Descriptive Data
	Eye-enriched transcripts determined by ratio of expression level in wild-type heads. versus expression level in so heads. (Xu et al., 2004)
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
extracellular region inferred from direct assay (Karlsson et al., 2004)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval fat body. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult testis, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut    67.1 Larval Hindgut    52.2 Larval Malpighian Tubules    8.8 Larval Fat Body    2718.9 Larval Salivary Gland    72.3 Larval Trachea    35.575 Larval Carcass    126 Adult Head    228.6 Adult Eye    107.2 Adult Brain    16.2 Adult Thoracic-Abdominal Ganglion    14.8 Adult Crop    10.4 Adult Midgut    41.8 Adult Hindgut    10.6 Adult Malpighian Tubules    9.4 Adult Fat Body    48.4 Adult Salivary Gland    17 Adult Heart    31.675 Adult VirginFemale Spermatheca    21.8 Adult InseminatedFemale Spermatheca    19.9 Adult Ovary    8.3 Adult Testis    300 Adult Male Accessory Gland    12.8 Adult Carcass    87.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut    67.1 Larval Hindgut    52.2 Larval Malpighian Tubules    8.8 Larval Fat Body  (2718.9) Larval Salivary Gland    72.3 Larval Trachea    35.575 Larval Carcass    126 Adult Head    228.6 Adult Eye    107.2 Adult Brain    16.2 Adult Thoracic-Abdominal Ganglion    14.8 Adult Crop    10.4 Adult Midgut    41.8 Adult Hindgut    10.6 Adult Malpighian Tubules    9.4 Adult Fat Body    48.4 Adult Salivary Gland    17 Adult Heart    31.675 Adult VirginFemale Spermatheca    21.8 Adult InseminatedFemale Spermatheca    19.9 Adult Ovary    8.3 Adult Testis    300 Adult Male Accessory Gland    12.8 Adult Carcass    87.8 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut    67.1 Larval Hindgut    52.2 Larval Malpighian Tubules    8.8 Larval Fat Body  (2718.9) Larval Salivary Gland    72.3 Larval Trachea    35.575 Larval Carcass    126 Adult Head    228.6 Adult Eye    107.2 Adult Brain    16.2 Adult Thoracic-Abdominal Ganglion    14.8 Adult Crop    10.4 Adult Midgut    41.8 Adult Hindgut    10.6 Adult Malpighian Tubules    9.4 Adult Fat Body    48.4 Adult Salivary Gland    17 Adult Heart    31.675 Adult VirginFemale Spermatheca    21.8 Adult InseminatedFemale Spermatheca    19.9 Adult Ovary    8.3 Adult Testis    300 Adult Male Accessory Gland    12.8 Adult Carcass    87.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut    67.1 Larval Hindgut    52.2 Larval Malpighian Tubules    8.8 Larval Fat Body    2718.9 Larval Salivary Gland    72.3 Larval Trachea    35.575 Larval Carcass    126 Adult Head    228.6 Adult Eye    107.2 Adult Brain    16.2 Adult Thoracic-Abdominal Ganglion    14.8 Adult Crop    10.4 Adult Midgut    41.8 Adult Hindgut    10.6 Adult Malpighian Tubules    9.4 Adult Fat Body    48.4 Adult Salivary Gland    17 Adult Heart    31.675 Adult VirginFemale Spermatheca    21.8 Adult InseminatedFemale Spermatheca    19.9 Adult Ovary    8.3 Adult Testis    300 Adult Male Accessory Gland    12.8 Adult Carcass    87.8 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut    67.1 Larval Hindgut    52.2 Larval Malpighian Tubules    8.8 Larval Fat Body    2718.9 Larval Salivary Gland    72.3 Larval Trachea    35.575 Larval Carcass    126 Adult Head    228.6 Adult Eye    107.2 Adult Brain    16.2 Adult Thoracic-Abdominal Ganglion    14.8 Adult Crop    10.4 Adult Midgut    41.8 Adult Hindgut    10.6 Adult Malpighian Tubules    9.4 Adult Fat Body    48.4 Adult Salivary Gland    17 Adult Heart    31.675 Adult VirginFemale Spermatheca    21.8 Adult InseminatedFemale Spermatheca    19.9 Adult Ovary    8.3 Adult Testis    300 Adult Male Accessory Gland    12.8 Adult Carcass    87.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut    67.1 Larval Hindgut    52.2 Larval Malpighian Tubules    8.8 Larval Fat Body  (2718.9) Larval Salivary Gland    72.3 Larval Trachea    35.575 Larval Carcass    126 Adult Head    228.6 Adult Eye    107.2 Adult Brain    16.2 Adult Thoracic-Abdominal Ganglion    14.8 Adult Crop    10.4 Adult Midgut    41.8 Adult Hindgut    10.6 Adult Malpighian Tubules    9.4 Adult Fat Body    48.4 Adult Salivary Gland    17 Adult Heart    31.675 Adult VirginFemale Spermatheca    21.8 Adult InseminatedFemale Spermatheca    19.9 Adult Ovary    8.3 Adult Testis    300 Adult Male Accessory Gland    12.8 Adult Carcass    87.8 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut    67.1 Larval Hindgut    52.2 Larval Malpighian Tubules    8.8 Larval Fat Body  (2718.9) Larval Salivary Gland    72.3 Larval Trachea    35.575 Larval Carcass    126 Adult Head    228.6 Adult Eye    107.2 Adult Brain    16.2 Adult Thoracic-Abdominal Ganglion    14.8 Adult Crop    10.4 Adult Midgut    41.8 Adult Hindgut    10.6 Adult Malpighian Tubules    9.4 Adult Fat Body    48.4 Adult Salivary Gland    17 Adult Heart    31.675 Adult VirginFemale Spermatheca    21.8 Adult InseminatedFemale Spermatheca    19.9 Adult Ovary    8.3 Adult Testis    300 Adult Male Accessory Gland    12.8 Adult Carcass    87.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    7.025 Larval Midgut    67.1 Larval Hindgut    52.2 Larval Malpighian Tubules    8.8 Larval Fat Body    2718.9 Larval Salivary Gland    72.3 Larval Trachea    35.575 Larval Carcass    126 Adult Head    228.6 Adult Eye    107.2 Adult Brain    16.2 Adult Thoracic-Abdominal Ganglion    14.8 Adult Crop    10.4 Adult Midgut    41.8 Adult Hindgut    10.6 Adult Malpighian Tubules    9.4 Adult Fat Body    48.4 Adult Salivary Gland    17 Adult Heart    31.675 Adult VirginFemale Spermatheca    21.8 Adult InseminatedFemale Spermatheca    19.9 Adult Ovary    8.3 Adult Testis    300 Adult Male Accessory Gland    12.8 Adult Carcass    87.8 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    228.6   NA  Eye    107.2   NA  Brain    16.2   7.025  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    14.8   NA  Crop    no informative data   67.1  Midgut    41.8   52.2  Hindgut    10.6   8.8  Malpighian Tubules    9.4   2718.9  Fat Body    48.4   72.3  Salivary Gland    no informative data   NA  Heart    31.675   35.575  Trachea    NA   NA  VirginFemale Spermatheca    21.8   NA  InseminatedFemale Spermatheca    19.9   NA  Ovary    8.3   NA  Testis    300   NA  Male Accessory Gland    no informative data   126  Carcass    87.8 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    2 central nervous system, pupae P8    1 head, virgin 1-day female    2 head, virgin 4-day female    2 head, virgin 20-day female    8 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    4 head, mated 1-day male    3 head, mated 4-day male    9 head, mated 20-day male    17 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering    156 fat body, white prepupae    73 fat body, pupae P8    49 carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    25 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    2 central nervous system, pupae P8    1 head, virgin 1-day female    2 head, virgin 4-day female    2 head, virgin 20-day female    8 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    4 head, mated 1-day male    3 head, mated 4-day male    9 head, mated 20-day male    17 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering  (156) fat body, white prepupae  (73) fat body, pupae P8  (49) carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    25 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    2 central nervous system, pupae P8    1 head, virgin 1-day female    2 head, virgin 4-day female    2 head, virgin 20-day female    8 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    4 head, mated 1-day male    3 head, mated 4-day male    9 head, mated 20-day male    17 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering  (156) fat body, white prepupae    73 fat body, pupae P8    49 carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    25 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    2 central nervous system, pupae P8    1 head, virgin 1-day female    2 head, virgin 4-day female    2 head, virgin 20-day female    8 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    4 head, mated 1-day male    3 head, mated 4-day male    9 head, mated 20-day male    17 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering    156 fat body, white prepupae    73 fat body, pupae P8    49 carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    25 accessory gland, mated 4-day male    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    2 central nervous system, pupae P8    1 head, virgin 1-day female    2 head, virgin 4-day female    2 head, virgin 20-day female    8 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    4 head, mated 1-day male    3 head, mated 4-day male    9 head, mated 20-day male    17 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering    156 fat body, white prepupae    73 fat body, pupae P8    49 carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    25 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    2 central nervous system, pupae P8    1 head, virgin 1-day female    2 head, virgin 4-day female    2 head, virgin 20-day female    8 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    4 head, mated 1-day male    3 head, mated 4-day male    9 head, mated 20-day male    17 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering  (156) fat body, white prepupae  (73) fat body, pupae P8  (49) carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    25 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    2 central nervous system, pupae P8    1 head, virgin 1-day female    2 head, virgin 4-day female    2 head, virgin 20-day female    8 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    4 head, mated 1-day male    3 head, mated 4-day male    9 head, mated 20-day male    17 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering  (156) fat body, white prepupae    73 fat body, pupae P8    49 carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    25 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    2 central nervous system, pupae P8    1 head, virgin 1-day female    2 head, virgin 4-day female    2 head, virgin 20-day female    8 head, mated 1-day female    5 head, mated 4-day female    6 head, mated 20-day female    4 head, mated 1-day male    3 head, mated 4-day male    9 head, mated 20-day male    17 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    1 fat body, larvae L3 wandering    156 fat body, white prepupae    73 fat body, pupae P8    49 carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    3 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    25 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 06-18 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    6 embryo 08-10hr    19 embryo 10-12hr    68 embryo 12-14hr    109 embryo 14-16hr    43 embryo 16-18hr    39 embryo 18-20hr    15 embryo 20-22hr    3 embryo 22-24hr    6 larva L1    0 larva L2    3 larva L3 12hr old    13 larva L3 puffstage 1-2    45 larva L3 puffstage 3-6    36 larva L3 puffstage 7-9    26 white prepupae new    20 white prepupae 12hr    25 white prepupae 24hr    32 pupae 2d postWPP    29 pupae 3d postWPP    25 pupae 4d postWPP    6 adult male 01day    13 adult male 05day    16 adult male 30day    12 adult female 01day    3 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    6 embryo 08-10hr    19 embryo 10-12hr  (68) embryo 12-14hr  (109) embryo 14-16hr  (43) embryo 16-18hr  (39) embryo 18-20hr    15 embryo 20-22hr    3 embryo 22-24hr    6 larva L1    0 larva L2    3 larva L3 12hr old    13 larva L3 puffstage 1-2  (45) larva L3 puffstage 3-6  (36) larva L3 puffstage 7-9  26 white prepupae new    20 white prepupae 12hr    25 white prepupae 24hr  (32) pupae 2d postWPP  (29) pupae 3d postWPP    25 pupae 4d postWPP    6 adult male 01day    13 adult male 05day    16 adult male 30day    12 adult female 01day    3 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    6 embryo 08-10hr    19 embryo 10-12hr    68 embryo 12-14hr  (109) embryo 14-16hr    43 embryo 16-18hr    39 embryo 18-20hr    15 embryo 20-22hr    3 embryo 22-24hr    6 larva L1    0 larva L2    3 larva L3 12hr old    13 larva L3 puffstage 1-2    45 larva L3 puffstage 3-6    36 larva L3 puffstage 7-9    26 white prepupae new    20 white prepupae 12hr    25 white prepupae 24hr    32 pupae 2d postWPP    29 pupae 3d postWPP    25 pupae 4d postWPP    6 adult male 01day    13 adult male 05day    16 adult male 30day    12 adult female 01day    3 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    6 embryo 08-10hr    19 embryo 10-12hr    68 embryo 12-14hr    109 embryo 14-16hr    43 embryo 16-18hr    39 embryo 18-20hr    15 embryo 20-22hr    3 embryo 22-24hr    6 larva L1    0 larva L2    3 larva L3 12hr old    13 larva L3 puffstage 1-2    45 larva L3 puffstage 3-6    36 larva L3 puffstage 7-9    26 white prepupae new    20 white prepupae 12hr    25 white prepupae 24hr    32 pupae 2d postWPP    29 pupae 3d postWPP    25 pupae 4d postWPP    6 adult male 01day    13 adult male 05day    16 adult male 30day    12 adult female 01day    3 adult female 05day    7 adult female 30day    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    6 embryo 08-10hr    19 embryo 10-12hr    68 embryo 12-14hr    109 embryo 14-16hr    43 embryo 16-18hr    39 embryo 18-20hr    15 embryo 20-22hr    3 embryo 22-24hr    6 larva L1    0 larva L2    3 larva L3 12hr old    13 larva L3 puffstage 1-2    45 larva L3 puffstage 3-6    36 larva L3 puffstage 7-9    26 white prepupae new    20 white prepupae 12hr    25 white prepupae 24hr    32 pupae 2d postWPP    29 pupae 3d postWPP    25 pupae 4d postWPP    6 adult male 01day    13 adult male 05day    16 adult male 30day    12 adult female 01day    3 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    6 embryo 08-10hr    19 embryo 10-12hr  (68) embryo 12-14hr  (109) embryo 14-16hr  (43) embryo 16-18hr  (39) embryo 18-20hr    15 embryo 20-22hr    3 embryo 22-24hr    6 larva L1    0 larva L2    3 larva L3 12hr old    13 larva L3 puffstage 1-2  (45) larva L3 puffstage 3-6  (36) larva L3 puffstage 7-9  26 white prepupae new    20 white prepupae 12hr    25 white prepupae 24hr  32 pupae 2d postWPP  29 pupae 3d postWPP    25 pupae 4d postWPP    6 adult male 01day    13 adult male 05day    16 adult male 30day    12 adult female 01day    3 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    6 embryo 08-10hr    19 embryo 10-12hr    68 embryo 12-14hr  109 embryo 14-16hr    43 embryo 16-18hr    39 embryo 18-20hr    15 embryo 20-22hr    3 embryo 22-24hr    6 larva L1    0 larva L2    3 larva L3 12hr old    13 larva L3 puffstage 1-2    45 larva L3 puffstage 3-6    36 larva L3 puffstage 7-9    26 white prepupae new    20 white prepupae 12hr    25 white prepupae 24hr    32 pupae 2d postWPP    29 pupae 3d postWPP    25 pupae 4d postWPP    6 adult male 01day    13 adult male 05day    16 adult male 30day    12 adult female 01day    3 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    2 embryo 06-08hr    6 embryo 08-10hr    19 embryo 10-12hr    68 embryo 12-14hr    109 embryo 14-16hr    43 embryo 16-18hr    39 embryo 18-20hr    15 embryo 20-22hr    3 embryo 22-24hr    6 larva L1    0 larva L2    3 larva L3 12hr old    13 larva L3 puffstage 1-2    45 larva L3 puffstage 3-6    36 larva L3 puffstage 7-9    26 white prepupae new    20 white prepupae 12hr    25 white prepupae 24hr    32 pupae 2d postWPP    29 pupae 3d postWPP    25 pupae 4d postWPP    6 adult male 01day    13 adult male 05day    16 adult male 30day    12 adult female 01day    3 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    0 embryonic Kc167    1 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    4 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    0 embryonic Kc167    1 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    4 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    0 embryonic Kc167    1 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    4 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    0 embryonic Kc167    1 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    4 ovary OSC    1 ovary OSS    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    0 embryonic Kc167    1 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    4 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    0 embryonic Kc167    1 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    4 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    0 embryonic Kc167    1 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    4 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    1 embryonic GM2    0 embryonic Kc167    1 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    4 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    43 Cadmium 50 mM 12 hrs, larvae L3    91 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    45 Ethanol 10% 3 hrs, larvae L3    40 Caffeine 1.5 mg/ml 4 hrs, larvae L3    45 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    45 Rotenone 8 μg 12 hrs, larvae L3    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3  (43) Cadmium 50 mM 12 hrs, larvae L3  (91) Cadmium 50 mM 48 hrs, 4-day adult  (27) Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3  (45) Ethanol 10% 3 hrs, larvae L3  (40) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (45) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3  (45) Rotenone 8 μg 12 hrs, larvae L3    22 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    43 Cadmium 50 mM 12 hrs, larvae L3    91 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    45 Ethanol 10% 3 hrs, larvae L3    40 Caffeine 1.5 mg/ml 4 hrs, larvae L3    45 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    45 Rotenone 8 μg 12 hrs, larvae L3    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    43 Cadmium 50 mM 12 hrs, larvae L3    91 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    45 Ethanol 10% 3 hrs, larvae L3    40 Caffeine 1.5 mg/ml 4 hrs, larvae L3    45 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    45 Rotenone 8 μg 12 hrs, larvae L3    22 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    43 Cadmium 50 mM 12 hrs, larvae L3    91 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    45 Ethanol 10% 3 hrs, larvae L3    40 Caffeine 1.5 mg/ml 4 hrs, larvae L3    45 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    45 Rotenone 8 μg 12 hrs, larvae L3    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3  (43) Cadmium 50 mM 12 hrs, larvae L3  (91) Cadmium 50 mM 48 hrs, 4-day adult  27 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3  (45) Ethanol 10% 3 hrs, larvae L3  (40) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (45) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3  (45) Rotenone 8 μg 12 hrs, larvae L3    22 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    43 Cadmium 50 mM 12 hrs, larvae L3    91 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    45 Ethanol 10% 3 hrs, larvae L3    40 Caffeine 1.5 mg/ml 4 hrs, larvae L3    45 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    45 Rotenone 8 μg 12 hrs, larvae L3    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    43 Cadmium 50 mM 12 hrs, larvae L3    91 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    45 Ethanol 10% 3 hrs, larvae L3    40 Caffeine 1.5 mg/ml 4 hrs, larvae L3    45 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    2 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    45 Rotenone 8 μg 12 hrs, larvae L3    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_25
External Data & Images
Linkouts	BDGP expression data • RE30433 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036787 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG4306-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG4306 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG4306 Class Mutagen Stocks Known lesion CG4306F422.1 Delta2-3 0 Yes
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG4306 Class Mutagen Stocks Known lesion CG4306GD4987 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes CG4306KK102424 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes CG4306NIG.4306R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4987} NA P{KK102424} NA P{NIG.4306R} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{Mae-UAS.6.11}CG4306F422.1 NA
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
hemolymph coagulation inferred from expression pattern (Karlsson et al., 2004)
Cellular Component
CV term Evidence References
extracellular region inferred from direct assay (Karlsson et al., 2004)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
gamma-glutamylcyclotransferase activity inferred from electronic annotation with InterPro:IPR017939 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
glutathione biosynthetic process inferred from electronic annotation with InterPro:IPR017939 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG4306 - CG11777 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG4306 - CG18081 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG4306 - CG3689 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG4306 - CG5902 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG4306 - CG7049 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG4306 - Cg25C anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG4306 - Ote anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG4306 - RpS12 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG4306 - RpS21 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG4306 - isoQC anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG4306 - vkg anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG4306 allele Gene References unspecified os (Mukherjee et al., 2006)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 65301 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0036787 DroID - A comprehensive database of gene and protein interactions. • FBgn0036787 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40017
Orthologs
OrthoDB Orthologs (43) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6Z371B Dipteran inclusive ortholog search EOG6JHCQW Insect inclusive ortholog search EOG6228G9 Arthropod inclusive ortholog search EOG6MSBFQ Metazoa inclusive ortholog search EOG6R875T
Orthologs in Drosophila Species (EOG6Z371B)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG4306     Drosophila simulans   Dsim\GD12343 Y   Drosophila sechellia   Dsec\GM14939 Y   Drosophila erecta   Dere\GG15742 Y   Drosophila yakuba   Dyak\GE22074 Y   Drosophila ananassae   Dana\GF10818 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA18096 Y   Drosophila persimilis   Dper\GL22703 Y   Drosophila willistoni   Dwil\GK11527 Y   Drosophila virilis   Dvir\GJ11390 Y   Drosophila mojavensis   Dmoj\GI11714 Y   Drosophila grimshawi   Dgri\GH23200     Drosophila grimshawi   Dgri\GH17111
Orthologs in non-Drosophila Dipterans (EOG6JHCQW)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL000186 Y Anopheles gambiae Malaria mosquito  Agam\AGAP010449 Y Anopheles gambiae Malaria mosquito  Agam\AGAP010447 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ008797 Y
Orthologs in non-Dipteran Insects (EOG6228G9)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB54191 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006547 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006543 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH19698 Y Atta cephalotes Leafcutter ant  Acep\ACEP13722 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO18252 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12826 Y Linepithema humile Argentine ant  Lhum\LH11014 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB23897 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI002097 Y Bombyx mori Silkmoth  Bmor\BGIBMGA003537 Y Bombyx mori Silkmoth  Bmor\BGIBMGA003538 Y Pediculus humanus Human body louse  Phum\PHUM041020 Y Tribolium castaneum Red flour beetle  Tcas\TC010677 Y
Orthologs in non-Insect Arthropods (EOG6MSBFQ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_303711 Y
Orthologs in non-Arthropod Metazoa (EOG6R875T)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\C44B7.7 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_028755gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_015477gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_016119gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_028754gn Y Xenopus tropicalis Western clawed frog  Xtro\ggct Y Gallus gallus Domestic chicken  Ggal\GGCT Y Mus musculus House mouse  Mmus\Ggct Y Rattus norvegicus Norway rat  Rnor\Ggct Y Rattus norvegicus Norway rat  Rnor\Ggct Y Homo sapiens Human  Hsap\ENSG00000006625 Y
Human Orthologs (1)
Gene OMIM HGNC Hsap\ENSG00000006625
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD12343 Drosophila sechellia Dsec\GM14939 Drosophila erecta Dere\GG15742 Drosophila yakuba Dyak\GE22074 Drosophila ananassae Dana\GF10818 Drosophila pseudoobscura pseudoobscura Dpse\GA18096 Drosophila persimilis Dper\GL22703 Drosophila willistoni Dwil\GK11527 Drosophila virilis Dvir\GJ11390 Drosophila mojavensis Dmoj\GI11714
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 1 )
	BACR35F04 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 89 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE30433 RE32301
Other clones	DPiM_RE30433
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	28813 29109 102727 122827 CK01.102A.D8 CK00333 EC27059 EC28343 EC33274 EK078348 EK086048 EK136910 EK137058 EK217504 EK226018 LD05328 RP003008652 RP003010873 RP003038602 RP003046926 RP003051374 RP003067862 RP003070306 RP003086123 RP003089453 RP003102209 RP003125274 RP003127132 RP003127638 RP003133745 RP003144233 RP003146529 RP003146745 RP003157187 RP003162686 RP003164407 RP003181988 RP003186944 RP003203665 RP003205942 RP003218755 RP003221686 RP003222048 RP003227402 RP003229742 RP003237017 RP003248216 RP003255257 RP003255595 RP003261736 RP003285921 RP003286280 RP003287585 RP003308953 RP003313923 RP003315818 RP003331175 RP003333270 RP003350325 RP003360518 RP003378541 RP003389970 RP003395209 RP003403354 RP003418493 RP003450121 RP003451834 RP003454061 RP003461919 RP003467356 RP003467590 RP003473189 RP003483017 RP003516190 RP003533181 RP003548511 RP003554323 RP003558732 RP003579681 RP003612097 RP003631621 RP003647087 RP003648606 RP003660791 RP003661426 RP003663401
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0036787 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40017
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	dsRNA made from templates generated with primers directed against this gene used in a cell-based RNAi assay to identify components or modifiers of the JAK/STAT pathway. (Mukherjee et al., 2006)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_140781 RefSeq (Proteins) • NP_649038 DDBJ / EMBL / GenBank • AAF49262 AAL48896 AAL89891 AY071274 AY084153 BI234686 BI236264 Entrez Gene - A searchable database of RefSeq genes. • 40017 UniProtKB/TrEMBL • Q9VVP9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Gamma-glutamylcyclotransferase (IPR017939) Butirosin biosynthesis, BtrG-like (IPR013024) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE30433
Linkouts
	BioGRID - A database of protein and genetic interactions • 65301 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0036787 DroID - A comprehensive database of gene and protein interactions. • FBgn0036787 DRSC - Results from RNAi screens. • FBgn0036787 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036787 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG4306-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0036787 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40017 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40017 modMine - Data generated by the modENCODE project. • FBgn0036787
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG4306 (Mukherjee et al., 2006, Mastushita-Sakai et al., 2010, Keleman et al., 2009.8.5, Haussmann et al., 2008, Tomancak et al., 2007, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
References ( 18 )
Research paper	Mastushita-Sakai et al., 2010, Proc. Natl. Acad. Sci. U.S.A. 107(26): 11987--11992 Drosophila Orb2 targets genes involved in neuronal growth, synapse formation, and protein turnover. [FBrf0211209] Haussmann et al., 2008, Genome Biol. 9(4): R73 Erect wing regulates synaptic growth in Drosophila by integration of multiple signaling pathways. [FBrf0209726] Tomancak et al., 2007, Genome Biol. 8(7): R145 Global analysis of patterns of gene expression during Drosophila embryogenesis. [FBrf0205271] Mukherjee et al., 2006, Genetics 172(3): 1683--1697 Identification of Drosophila genes modulating janus kinase/signal transducer and activator of transcription signal transduction. [FBrf0190752] Karlsson et al., 2004, J. Biol. Chem. 279(50): 52033--52041 Proteomic analysis of the Drosophila larval hemolymph clot. [FBrf0180365] Vierstraete et al., 2004, Biochem. Biophys. Res. Commun. 317(4): 1052--1060 The instantly released Drosophila immune proteome is infection-specific. [FBrf0174382] Xu et al., 2004, EMBO J. 23(4): 811--822 A lysosomal tetraspanin associated with retinal degeneration identified via a genome-wide screen. [FBrf0174603] Vierstraete et al., 2003, Biochem. Biophys. Res. Commun. 304(4): 831--838 Proteomics in Drosophila melanogaster: first 2D database of larval hemolymph proteins. [FBrf0158736]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]