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Gene Dmel\CG9376

General Information
Symbol	Dmel\CG9376	Species	D. melanogaster
Name		Annotation symbol	CG9376
Feature type	protein_coding_gene	FlyBase ID	FBgn0036893
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	76B9-76B9	Sequence location	3L:19,605,560..19,606,589 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG9376 (FBgn0036893). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: GPI anchor biosynthetic process. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: GPI biosynthesis protein Pig-F. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval central nervous system, larval midgut, larval/adult Malpighian tubules, larval fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland. Comments on Affy2 ProbeSet: ProbeSet 1632835_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG9376. Gene sequence location is 3L:19605560..19606589.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN24008 HFA11069
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 76B9-76B9   Limits computationally determined from genome sequence between P{EP}MESR6EP3142 and P{lacW}l(3)L3809L3809
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG9376 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG9376-RA FBtr0074946  NM_140877   1030   236
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG9376-PA   FBpp0074714   26.3   236   9.17     NP_649134   AAF49133
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • GPI biosynthesis protein Pig-F (IPR009580)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014296 AAF49133   AY070790 AAL48412   BF499417   CO182292   EC051703   EC052182   EC052715   EC054712   EC056488   EV579317   GH942703   GH945138   GH951932   GH952436   GH954192   GH965898   GH970460   GH970495   GH975539
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8MTV3 Q9VW21
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0036893    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0036893 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0036893 expression level Developmental Stage   Expression Level embryo 00-02hr    2533 embryo 02-04hr    338 embryo 04-06hr    490 embryo 06-08hr    1206 embryo 08-10hr    1476 embryo 10-12hr    1492 embryo 12-14hr    1455 embryo 14-16hr    774 embryo 16-18hr    842 embryo 18-20hr    755 embryo 20-22hr    547 embryo 22-24hr    711 larva L1    640 larva L2    841 larva L3 12hr old    652 larva L3 puffstage 1-2    883 larva L3 puffstage 3-6    964 larva L3 puffstage 7-9    1157 white prepupae new    1172 white prepupae 12hr    1205 white prepupae 24hr    1349 pupae 2d postWPP    1332 pupae 3d postWPP    932 pupae 4d postWPP    429 adult male 01day    786 adult male 05day    923 adult male 30day    679 adult female 01day    790 adult female 05day    1839 adult female 30day    1784 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2533) embryo 02-04hr  (338) embryo 04-06hr  (490) embryo 06-08hr  (1206) embryo 08-10hr  (1476) embryo 10-12hr  (1492) embryo 12-14hr  (1455) embryo 14-16hr  (774) embryo 16-18hr  (842) embryo 18-20hr  (755) embryo 20-22hr  (547) embryo 22-24hr  (711) larva L1  (640) larva L2  (841) larva L3 12hr old  (652) larva L3 puffstage 1-2  (883) larva L3 puffstage 3-6  (964) larva L3 puffstage 7-9  (1157) white prepupae new  (1172) white prepupae 12hr  (1205) white prepupae 24hr  (1349) pupae 2d postWPP  (1332) pupae 3d postWPP  (932) pupae 4d postWPP  (429) adult male 01day  (786) adult male 05day  (923) adult male 30day  (679) adult female 01day  (790) adult female 05day  (1839) adult female 30day  (1784) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2533) embryo 02-04hr    338 embryo 04-06hr    490 embryo 06-08hr    1206 embryo 08-10hr  1476 embryo 10-12hr  1492 embryo 12-14hr  1455 embryo 14-16hr    774 embryo 16-18hr    842 embryo 18-20hr    755 embryo 20-22hr    547 embryo 22-24hr    711 larva L1    640 larva L2    841 larva L3 12hr old    652 larva L3 puffstage 1-2    883 larva L3 puffstage 3-6    964 larva L3 puffstage 7-9    1157 white prepupae new    1172 white prepupae 12hr    1205 white prepupae 24hr    1349 pupae 2d postWPP    1332 pupae 3d postWPP    932 pupae 4d postWPP    429 adult male 01day    786 adult male 05day    923 adult male 30day    679 adult female 01day    790 adult female 05day  (1839) adult female 30day  (1784) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2533 embryo 02-04hr    338 embryo 04-06hr    490 embryo 06-08hr    1206 embryo 08-10hr    1476 embryo 10-12hr    1492 embryo 12-14hr    1455 embryo 14-16hr    774 embryo 16-18hr    842 embryo 18-20hr    755 embryo 20-22hr    547 embryo 22-24hr    711 larva L1    640 larva L2    841 larva L3 12hr old    652 larva L3 puffstage 1-2    883 larva L3 puffstage 3-6    964 larva L3 puffstage 7-9    1157 white prepupae new    1172 white prepupae 12hr    1205 white prepupae 24hr    1349 pupae 2d postWPP    1332 pupae 3d postWPP    932 pupae 4d postWPP    429 adult male 01day    786 adult male 05day    923 adult male 30day    679 adult female 01day    790 adult female 05day    1839 adult female 30day    1784 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2533 embryo 02-04hr    338 embryo 04-06hr    490 embryo 06-08hr    1206 embryo 08-10hr    1476 embryo 10-12hr    1492 embryo 12-14hr    1455 embryo 14-16hr    774 embryo 16-18hr    842 embryo 18-20hr    755 embryo 20-22hr    547 embryo 22-24hr    711 larva L1    640 larva L2    841 larva L3 12hr old    652 larva L3 puffstage 1-2    883 larva L3 puffstage 3-6    964 larva L3 puffstage 7-9    1157 white prepupae new    1172 white prepupae 12hr    1205 white prepupae 24hr    1349 pupae 2d postWPP    1332 pupae 3d postWPP    932 pupae 4d postWPP    429 adult male 01day    786 adult male 05day    923 adult male 30day    679 adult female 01day    790 adult female 05day    1839 adult female 30day    1784 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0036893 expression level Developmental Stage   Expression Level embryo 00-02hr    2533 embryo 02-04hr    338 embryo 04-06hr    490 embryo 06-08hr    1206 embryo 08-10hr    1476 embryo 10-12hr    1492 embryo 12-14hr    1455 embryo 14-16hr    774 embryo 16-18hr    842 embryo 18-20hr    755 embryo 20-22hr    547 embryo 22-24hr    711 larva L1    640 larva L2    841 larva L3 12hr old    652 larva L3 puffstage 1-2    883 larva L3 puffstage 3-6    964 larva L3 puffstage 7-9    1157 white prepupae new    1172 white prepupae 12hr    1205 white prepupae 24hr    1349 pupae 2d postWPP    1332 pupae 3d postWPP    932 pupae 4d postWPP    429 adult male 01day    786 adult male 05day    923 adult male 30day    679 adult female 01day    790 adult female 05day    1839 adult female 30day    1784 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2533) embryo 02-04hr  (338) embryo 04-06hr  (490) embryo 06-08hr  (1206) embryo 08-10hr  (1476) embryo 10-12hr  (1492) embryo 12-14hr  (1455) embryo 14-16hr  (774) embryo 16-18hr  (842) embryo 18-20hr  (755) embryo 20-22hr  (547) embryo 22-24hr  (711) larva L1  (640) larva L2  (841) larva L3 12hr old  (652) larva L3 puffstage 1-2  (883) larva L3 puffstage 3-6  (964) larva L3 puffstage 7-9  (1157) white prepupae new  (1172) white prepupae 12hr  (1205) white prepupae 24hr  (1349) pupae 2d postWPP  (1332) pupae 3d postWPP  (932) pupae 4d postWPP  (429) adult male 01day  (786) adult male 05day  (923) adult male 30day  (679) adult female 01day  (790) adult female 05day  (1839) adult female 30day  (1784) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2533) embryo 02-04hr    338 embryo 04-06hr    490 embryo 06-08hr    1206 embryo 08-10hr  1476 embryo 10-12hr  1492 embryo 12-14hr  1455 embryo 14-16hr    774 embryo 16-18hr    842 embryo 18-20hr    755 embryo 20-22hr    547 embryo 22-24hr    711 larva L1    640 larva L2    841 larva L3 12hr old    652 larva L3 puffstage 1-2    883 larva L3 puffstage 3-6    964 larva L3 puffstage 7-9    1157 white prepupae new    1172 white prepupae 12hr    1205 white prepupae 24hr    1349 pupae 2d postWPP    1332 pupae 3d postWPP    932 pupae 4d postWPP    429 adult male 01day    786 adult male 05day    923 adult male 30day    679 adult female 01day    790 adult female 05day  1839 adult female 30day  1784 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2533 embryo 02-04hr    338 embryo 04-06hr    490 embryo 06-08hr    1206 embryo 08-10hr    1476 embryo 10-12hr    1492 embryo 12-14hr    1455 embryo 14-16hr    774 embryo 16-18hr    842 embryo 18-20hr    755 embryo 20-22hr    547 embryo 22-24hr    711 larva L1    640 larva L2    841 larva L3 12hr old    652 larva L3 puffstage 1-2    883 larva L3 puffstage 3-6    964 larva L3 puffstage 7-9    1157 white prepupae new    1172 white prepupae 12hr    1205 white prepupae 24hr    1349 pupae 2d postWPP    1332 pupae 3d postWPP    932 pupae 4d postWPP    429 adult male 01day    786 adult male 05day    923 adult male 30day    679 adult female 01day    790 adult female 05day    1839 adult female 30day    1784 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2533 embryo 02-04hr    338 embryo 04-06hr    490 embryo 06-08hr    1206 embryo 08-10hr    1476 embryo 10-12hr    1492 embryo 12-14hr    1455 embryo 14-16hr    774 embryo 16-18hr    842 embryo 18-20hr    755 embryo 20-22hr    547 embryo 22-24hr    711 larva L1    640 larva L2    841 larva L3 12hr old    652 larva L3 puffstage 1-2    883 larva L3 puffstage 3-6    964 larva L3 puffstage 7-9    1157 white prepupae new    1172 white prepupae 12hr    1205 white prepupae 24hr    1349 pupae 2d postWPP    1332 pupae 3d postWPP    932 pupae 4d postWPP    429 adult male 01day    786 adult male 05day    923 adult male 30day    679 adult female 01day    790 adult female 05day    1839 adult female 30day    1784 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0036893    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0036893 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval central nervous system, larval midgut, larval/adult Malpighian tubules, larval fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0036893 expression level Tissue   Expression Level Larval Central Nervous System    156.175 Larval Midgut    101 Larval Hindgut    87.1 Larval Malpighian Tubules    157.5 Larval Fat Body    108.5 Larval Salivary Gland    180.1 Larval Trachea    111.25 Larval Carcass    56.65 Adult Head    66.5 Adult Eye    141.1 Adult Brain    92.1 Adult Thoracic-Abdominal Ganglion    83.4 Adult Crop    43.5 Adult Midgut    99.6 Adult Hindgut    63.3 Adult Malpighian Tubules    122.3 Adult Fat Body    49.4 Adult Salivary Gland    211.3 Adult Heart    80.45 Adult VirginFemale Spermatheca    117.3 Adult InseminatedFemale Spermatheca    116.6 Adult Ovary    227 Adult Testis    96.5 Adult Male Accessory Gland    168.3 Adult Carcass    54.4 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    156.175 Larval Midgut    101 Larval Hindgut    87.1 Larval Malpighian Tubules    157.5 Larval Fat Body    108.5 Larval Salivary Gland    180.1 Larval Trachea    111.25 Larval Carcass    56.65 Adult Head    66.5 Adult Eye    141.1 Adult Brain    92.1 Adult Thoracic-Abdominal Ganglion    83.4 Adult Crop    43.5 Adult Midgut    99.6 Adult Hindgut    63.3 Adult Malpighian Tubules    122.3 Adult Fat Body    49.4 Adult Salivary Gland    211.3 Adult Heart    80.45 Adult VirginFemale Spermatheca    117.3 Adult InseminatedFemale Spermatheca    116.6 Adult Ovary    227 Adult Testis    96.5 Adult Male Accessory Gland    168.3 Adult Carcass    54.4 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    156.175 Larval Midgut    101 Larval Hindgut    87.1 Larval Malpighian Tubules    157.5 Larval Fat Body    108.5 Larval Salivary Gland    180.1 Larval Trachea    111.25 Larval Carcass    56.65 Adult Head    66.5 Adult Eye    141.1 Adult Brain    92.1 Adult Thoracic-Abdominal Ganglion    83.4 Adult Crop    43.5 Adult Midgut    99.6 Adult Hindgut    63.3 Adult Malpighian Tubules    122.3 Adult Fat Body    49.4 Adult Salivary Gland    211.3 Adult Heart    80.45 Adult VirginFemale Spermatheca    117.3 Adult InseminatedFemale Spermatheca    116.6 Adult Ovary    227 Adult Testis    96.5 Adult Male Accessory Gland    168.3 Adult Carcass    54.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    156.175 Larval Midgut    101 Larval Hindgut    87.1 Larval Malpighian Tubules    157.5 Larval Fat Body    108.5 Larval Salivary Gland    180.1 Larval Trachea    111.25 Larval Carcass    56.65 Adult Head    66.5 Adult Eye    141.1 Adult Brain    92.1 Adult Thoracic-Abdominal Ganglion    83.4 Adult Crop    43.5 Adult Midgut    99.6 Adult Hindgut    63.3 Adult Malpighian Tubules    122.3 Adult Fat Body    49.4 Adult Salivary Gland    211.3 Adult Heart    80.45 Adult VirginFemale Spermatheca    117.3 Adult InseminatedFemale Spermatheca    116.6 Adult Ovary    227 Adult Testis    96.5 Adult Male Accessory Gland    168.3 Adult Carcass    54.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0036893 expression level Tissue   Expression Level Larval Central Nervous System    156.175 Larval Midgut    101 Larval Hindgut    87.1 Larval Malpighian Tubules    157.5 Larval Fat Body    108.5 Larval Salivary Gland    180.1 Larval Trachea    111.25 Larval Carcass    56.65 Adult Head    66.5 Adult Eye    141.1 Adult Brain    92.1 Adult Thoracic-Abdominal Ganglion    83.4 Adult Crop    43.5 Adult Midgut    99.6 Adult Hindgut    63.3 Adult Malpighian Tubules    122.3 Adult Fat Body    49.4 Adult Salivary Gland    211.3 Adult Heart    80.45 Adult VirginFemale Spermatheca    117.3 Adult InseminatedFemale Spermatheca    116.6 Adult Ovary    227 Adult Testis    96.5 Adult Male Accessory Gland    168.3 Adult Carcass    54.4 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    156.175 Larval Midgut    101 Larval Hindgut    87.1 Larval Malpighian Tubules    157.5 Larval Fat Body    108.5 Larval Salivary Gland    180.1 Larval Trachea    111.25 Larval Carcass    56.65 Adult Head    66.5 Adult Eye    141.1 Adult Brain    92.1 Adult Thoracic-Abdominal Ganglion    83.4 Adult Crop    43.5 Adult Midgut    99.6 Adult Hindgut    63.3 Adult Malpighian Tubules    122.3 Adult Fat Body    49.4 Adult Salivary Gland    211.3 Adult Heart    80.45 Adult VirginFemale Spermatheca    117.3 Adult InseminatedFemale Spermatheca    116.6 Adult Ovary    227 Adult Testis    96.5 Adult Male Accessory Gland    168.3 Adult Carcass    54.4 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    156.175 Larval Midgut    101 Larval Hindgut    87.1 Larval Malpighian Tubules    157.5 Larval Fat Body    108.5 Larval Salivary Gland    180.1 Larval Trachea    111.25 Larval Carcass    56.65 Adult Head    66.5 Adult Eye    141.1 Adult Brain    92.1 Adult Thoracic-Abdominal Ganglion    83.4 Adult Crop    43.5 Adult Midgut    99.6 Adult Hindgut    63.3 Adult Malpighian Tubules    122.3 Adult Fat Body    49.4 Adult Salivary Gland    211.3 Adult Heart    80.45 Adult VirginFemale Spermatheca    117.3 Adult InseminatedFemale Spermatheca    116.6 Adult Ovary    227 Adult Testis    96.5 Adult Male Accessory Gland    168.3 Adult Carcass    54.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    156.175 Larval Midgut    101 Larval Hindgut    87.1 Larval Malpighian Tubules    157.5 Larval Fat Body    108.5 Larval Salivary Gland    180.1 Larval Trachea    111.25 Larval Carcass    56.65 Adult Head    66.5 Adult Eye    141.1 Adult Brain    92.1 Adult Thoracic-Abdominal Ganglion    83.4 Adult Crop    43.5 Adult Midgut    99.6 Adult Hindgut    63.3 Adult Malpighian Tubules    122.3 Adult Fat Body    49.4 Adult Salivary Gland    211.3 Adult Heart    80.45 Adult VirginFemale Spermatheca    117.3 Adult InseminatedFemale Spermatheca    116.6 Adult Ovary    227 Adult Testis    96.5 Adult Male Accessory Gland    168.3 Adult Carcass    54.4 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    66.5   NA  Eye    141.1   NA  Brain    92.1   156.175  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    83.4   NA  Crop    43.5   101  Midgut    99.6   87.1  Hindgut    63.3   157.5  Malpighian Tubules    122.3   108.5  Fat Body    49.4   180.1  Salivary Gland    211.3   NA  Heart    80.45   111.25  Trachea    NA   NA  VirginFemale Spermatheca    117.3   NA  InseminatedFemale Spermatheca    116.6   NA  Ovary    227   NA  Testis    96.5   NA  Male Accessory Gland    168.3   56.65  Carcass    54.4 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_23
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036893 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9376-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG9376GD2734 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG9376 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG9376 Class Mutagen Stocks Known lesion CG9376GD2734 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG9376KK103816 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel9007 (Ryder, 2004.4.26) Df(3L)Exel9008 (Ryder, 2004.4.26) Df(3L)Exel9009 (Ryder, 2004.4.26) Df(3L)Exel9011 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD2734} NA P{KK103816} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
GPI anchor biosynthetic process inferred from electronic annotation with InterPro:IPR009580 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
endoplasmic reticulum membrane inferred from electronic annotation with InterPro:IPR009580 (FlyBase Curators et al., 2004-) integral to membrane inferred from electronic annotation with InterPro:IPR009580 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG9376 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0036893
Orthologs
Genome-wide drosophilid orthologs	Dana\GF23712 Dere\GG16049 Dgri\GH16941 Dmoj\GI11801 Dper\GL20948 Dpse\GA21741 Dsec\GM19613 Dsim\GD14818 Dvir\GJ13505 Dwil\GK19359 Dyak\GE19615
Curated drosophilid orthologs	Dpse\GA21741
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL015107-PA Aedes aegypti (mosquito) AGAP004816-PA Anopheles gambiae (mosquito) AGAP012934-PA Anopheles gambiae (mosquito) At1g16040.1 Arabidopsis thaliana (wall cress) 211692 Branchiostoma floridae (lancelet) 211926 Branchiostoma floridae (lancelet) BGIBMGA008074-PA Bombyx mori (silk worm) ENSBTAP00000020863 Bos taurus (bovine) ENSCAFP00000003825 Canis familiaris (dog) ENSCINP00000021994 Ciona intestinalis (sea squirt) CPIJ019240 Culex pipens (mosquito) 225794 Capitella spl (polychaete worm) DDB0235207 Dictyostelium discoideum (amoeba) DEHA2G17886g Debaryomyces Hansenii (yeast) ENSDARP00000050069 Danio rerio (zebra fish) ENSGACP00000003627 Gymnopilus aculeatus (mushroom) ENSGALP00000031279 Gallus gallus (chicken) 66403 Hypsipyla robusta (cedar shoot borer) KLLA0C10252g Kluyveromyces lactis (yeast) 110699 Lottia gigantea (owl limpet) ENSMODP00000001155 Monodelphis domestica (gray opossum) ENSORLP00000023400 Oryzias latipes (japanese killifish) LOC_Os03g03690.1 Oryza sativa (asian rice) 143966 Phytophthora sojae (root rot pathogen) 817587 Populus trichocarpa (black cottonwood) ENSRNOP00000020600 Rattus norvegicus (norway rat) XP_001185944.1 Strongylocentrotus purpuratus (purple sea urchin) XP_001187877.1 Strongylocentrotus purpuratus (purple sea urchin) ENSTNIP00000006199 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000011558 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000055317 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB13086 FBgn0236954 FBgn0221357 FBgn0200729 FBgn0186491 FBgn0174513 JGI_V11_300687 FBgn0081726 FBgn0158543 FBgn0134560 FBgn0124412 FBgn0108284 FBgn0100706 CPIJ011253 CPIJ019240 BGIBMGA008074 ACYPI25921 GB15368 AGAP012934 AGAP004816 AAEL015107 AAEL011190 PHUM479220 GLEAN_09427
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
VDRC	v106062 P{KK103816}VIE-260B v9457 w1118; P{GD2734}v9457
Genomic Clones ( 2 )
	BACR01D04 BACR23N10 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 17 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT13969
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	Dmel_dig_005873_0633_1148 EC22393 EC051703 EC052182 EC052715 EC054712 EC056488 RP004118219 RP004144568 RP004151571 RP004234563 RP004257380 RP004340098 RP004426493 RP004426694 RP004486470
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0036893 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40139
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_140877 RefSeq (Proteins) • NP_649134 DDBJ / EMBL / GenBank • AAF49133 AAL48412 AY070790 BF499417 Entrez Gene - A searchable database of RefSeq genes. • 40139 UniProtKB/TrEMBL • Q8MTV3 Q9VW21
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • GPI biosynthesis protein Pig-F (IPR009580)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0036893 DRSC - Results from RNAi screens. • FBgn0036893 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036893 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9376-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0036893 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40139 InParanoid A subset of ortholog calls from InParanoid. • AAEL015107-PA Aedes aegypti (mosquito) AGAP004816-PA Anopheles gambiae (mosquito) AGAP012934-PA Anopheles gambiae (mosquito) At1g16040.1 Arabidopsis thaliana (wall cress) 211692 Branchiostoma floridae (lancelet) 211926 Branchiostoma floridae (lancelet) BGIBMGA008074-PA Bombyx mori (silk worm) ENSBTAP00000020863 Bos taurus (bovine) ENSCAFP00000003825 Canis familiaris (dog) ENSCINP00000021994 Ciona intestinalis (sea squirt) CPIJ019240 Culex pipens (mosquito) 225794 Capitella spl (polychaete worm) DDB0235207 Dictyostelium discoideum (amoeba) DEHA2G17886g Debaryomyces Hansenii (yeast) ENSDARP00000050069 Danio rerio (zebra fish) ENSGACP00000003627 Gymnopilus aculeatus (mushroom) ENSGALP00000031279 Gallus gallus (chicken) 66403 Hypsipyla robusta (cedar shoot borer) KLLA0C10252g Kluyveromyces lactis (yeast) 110699 Lottia gigantea (owl limpet) ENSMODP00000001155 Monodelphis domestica (gray opossum) ENSORLP00000023400 Oryzias latipes (japanese killifish) LOC_Os03g03690.1 Oryza sativa (asian rice) 143966 Phytophthora sojae (root rot pathogen) 817587 Populus trichocarpa (black cottonwood) ENSRNOP00000020600 Rattus norvegicus (norway rat) XP_001185944.1 Strongylocentrotus purpuratus (purple sea urchin) XP_001187877.1 Strongylocentrotus purpuratus (purple sea urchin) ENSTNIP00000006199 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000011558 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000055317 Xenopus tropicalis (frog) modMine - Data generated by the modENCODE project. • FBgn0036893 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB13086 FBgn0236954 FBgn0221357 FBgn0200729 FBgn0186491 FBgn0174513 JGI_V11_300687 FBgn0081726 FBgn0158543 FBgn0134560 FBgn0124412 FBgn0108284 FBgn0100706 CPIJ011253 CPIJ019240 BGIBMGA008074 ACYPI25921 GB15368 AGAP012934 AGAP004816 AAEL015107 AAEL011190 PHUM479220 GLEAN_09427
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG9376 (Keleman et al., 2009.8.5, Philipps et al., 2004, Piacentini et al., 2009, Cooper et al., 2010, Kondylis et al., 2011)
Name Synonym
Secondary FlyBase IDs
References ( 14 )
Research paper	Kondylis et al., 2011, PLoS ONE 6(2): e17173 Identification of ER Proteins Involved in the Functional Organisation of the Early Secretory Pathway in Drosophila Cells by a Targeted RNAi Screen. [FBrf0213167] Cooper et al., 2010, Genetics 185(3): 811--822 Molecular Genetic Analysis of Chd3 and Polytene Chromosome Region 76B-D in Drosophila melanogaster. [FBrf0211329] Piacentini et al., 2009, PLoS Genet. 5(10): e1000670 Heterochromatin protein 1 (HP1a) positively regulates euchromatic gene expression through RNA transcript association and interaction with hnRNPs in Drosophila. [FBrf0209129] Philipps et al., 2004, RNA, N.Y. 10(12): 1838--1844 A computational and experimental approach toward a priori identification of alternatively spliced exons. [FBrf0180668]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Curated genome annotation	Yao, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126699]