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Gene Dmel\RhoGDI

General Information
Symbol	Dmel\RhoGDI	Species	D. melanogaster
Name	RhoGDI	Annotation symbol	CG7823
Feature type	protein_coding_gene	FlyBase ID	FBgn0036921
Gene Model Status	Current	Stock availability	10 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	76D5-76D5	Sequence location	3L:19,921,907..19,926,032 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene RhoGDI is referred to in FlyBase by the symbol Dmel\RhoGDI (CG7823, FBgn0036921). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: Rho GDP-dissociation inhibitor activity. The biological processes in which it is involved are not known. 15 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Immunoglobulin E-set; RHO protein GDP dissociation inhibitor. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 06-12 hour embryonic stages, during late larval stages, during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult fat body, adult testis, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1633804_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of RhoGDI. Gene sequence location is 3L:19921907..19926032.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01	Sequence features BKN29237 HFA10919 BKN28938
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 76D5-76D5   Limits computationally determined from genome sequence between P{lacW}l(3)L1243L1243&P{lacW}Mi-2j3D4 and P{PZ}eRF100103
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\RhoGDI for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) RhoGDI-RA FBtr0074896  NM_140905   1478   201
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein RhoGDI-PA   FBpp0074665   23.2   201   5.37     NP_649162   AAF49090
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • RHO protein GDP dissociation inhibitor (IPR000406) Immunoglobulin E-set (IPR014756)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA440325   AA441471   AA540182   AE014296 AAF49090   AW942418   AX094105   AY061221 AAL28769   CA803781   CO177494   CO177545   CO179732   CO182639   CO185166   CO192641   CO264921   CO266357   CO267678   CO271627   CO275900   CO283036   CO284026   CO284328   CO302981   CO303195   CO305183   CO317342   CO320260   CO326065   CO330701   CZ470448   CZ470449   CZ472574   CZ474726   CZ477505   CZ481840   CZ481841   EC059923   EC061353   EC062164   EC062190   EC067521   EC073789   EC077239   EC078107   EC081051   EC089635   EC203103   EC207097   EC211167   EC224892   EC233529   EC239163   EC256792   EV575581   EV594184   EV594204   EV599734   EV600427   GH945065   GH946512   GH947821   GH949603   GH951002   GH952452   GH956487   GH956685   GH957540   GH958330   GH960575   GH961427   GH961588   GH964727   GH965070   GH965983   GH969079   GH969305   GH969949   GH970587   GH972280   GH975076   GH977630   GH981406   GH983483
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VW59
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
expression microarray Stage Tissue/Position (including subcellular localization) Reference adult stage   eye   (Xu et al., 2004)
Additional Descriptive Data
	Eye-enriched transcripts determined by ratio of expression level in wild-type heads. versus expression level in so heads. (Xu et al., 2004)
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0036921    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0036921 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 06-12 hour embryonic stages, during late larval stages, during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0036921 expression level Developmental Stage   Expression Level embryo 00-02hr    5688 embryo 02-04hr    7722 embryo 04-06hr    5144 embryo 06-08hr    5188 embryo 08-10hr    9574 embryo 10-12hr    11784 embryo 12-14hr    8975 embryo 14-16hr    3327 embryo 16-18hr    4378 embryo 18-20hr    2833 embryo 20-22hr    5039 embryo 22-24hr    6366 larva L1    3437 larva L2    5270 larva L3 12hr old    3709 larva L3 puffstage 1-2    5883 larva L3 puffstage 3-6    7633 larva L3 puffstage 7-9    10519 white prepupae new    11115 white prepupae 12hr    7179 white prepupae 24hr    6193 pupae 2d postWPP    3818 pupae 3d postWPP    6657 pupae 4d postWPP    2015 adult male 01day    3302 adult male 05day    2735 adult male 30day    2362 adult female 01day    3263 adult female 05day    5740 adult female 30day    4934 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (5688) embryo 02-04hr  (7722) embryo 04-06hr  (5144) embryo 06-08hr  (5188) embryo 08-10hr  (9574) embryo 10-12hr  (11784) embryo 12-14hr  (8975) embryo 14-16hr  (3327) embryo 16-18hr  (4378) embryo 18-20hr  (2833) embryo 20-22hr  (5039) embryo 22-24hr  (6366) larva L1  (3437) larva L2  (5270) larva L3 12hr old  (3709) larva L3 puffstage 1-2  (5883) larva L3 puffstage 3-6  (7633) larva L3 puffstage 7-9  (10519) white prepupae new  (11115) white prepupae 12hr  (7179) white prepupae 24hr  (6193) pupae 2d postWPP  (3818) pupae 3d postWPP  (6657) pupae 4d postWPP  (2015) adult male 01day  (3302) adult male 05day  (2735) adult male 30day  (2362) adult female 01day  (3263) adult female 05day  (5740) adult female 30day  (4934) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (5688) embryo 02-04hr  (7722) embryo 04-06hr  (5144) embryo 06-08hr  (5188) embryo 08-10hr  (9574) embryo 10-12hr  (11784) embryo 12-14hr  (8975) embryo 14-16hr  (3327) embryo 16-18hr  (4378) embryo 18-20hr  (2833) embryo 20-22hr  (5039) embryo 22-24hr  (6366) larva L1  (3437) larva L2  (5270) larva L3 12hr old  (3709) larva L3 puffstage 1-2  (5883) larva L3 puffstage 3-6  (7633) larva L3 puffstage 7-9  (10519) white prepupae new  (11115) white prepupae 12hr  (7179) white prepupae 24hr  (6193) pupae 2d postWPP  (3818) pupae 3d postWPP  (6657) pupae 4d postWPP  (2015) adult male 01day  (3302) adult male 05day  (2735) adult male 30day  (2362) adult female 01day  (3263) adult female 05day  (5740) adult female 30day  (4934) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    5688 embryo 02-04hr    7722 embryo 04-06hr    5144 embryo 06-08hr    5188 embryo 08-10hr    9574 embryo 10-12hr  (11784) embryo 12-14hr    8975 embryo 14-16hr    3327 embryo 16-18hr    4378 embryo 18-20hr    2833 embryo 20-22hr    5039 embryo 22-24hr    6366 larva L1    3437 larva L2    5270 larva L3 12hr old    3709 larva L3 puffstage 1-2    5883 larva L3 puffstage 3-6    7633 larva L3 puffstage 7-9  10519 white prepupae new  (11115) white prepupae 12hr    7179 white prepupae 24hr    6193 pupae 2d postWPP    3818 pupae 3d postWPP    6657 pupae 4d postWPP    2015 adult male 01day    3302 adult male 05day    2735 adult male 30day    2362 adult female 01day    3263 adult female 05day    5740 adult female 30day    4934 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    5688 embryo 02-04hr    7722 embryo 04-06hr    5144 embryo 06-08hr    5188 embryo 08-10hr    9574 embryo 10-12hr    11784 embryo 12-14hr    8975 embryo 14-16hr    3327 embryo 16-18hr    4378 embryo 18-20hr    2833 embryo 20-22hr    5039 embryo 22-24hr    6366 larva L1    3437 larva L2    5270 larva L3 12hr old    3709 larva L3 puffstage 1-2    5883 larva L3 puffstage 3-6    7633 larva L3 puffstage 7-9    10519 white prepupae new    11115 white prepupae 12hr    7179 white prepupae 24hr    6193 pupae 2d postWPP    3818 pupae 3d postWPP    6657 pupae 4d postWPP    2015 adult male 01day    3302 adult male 05day    2735 adult male 30day    2362 adult female 01day    3263 adult female 05day    5740 adult female 30day    4934 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0036921 expression level Developmental Stage   Expression Level embryo 00-02hr    5688 embryo 02-04hr    7722 embryo 04-06hr    5144 embryo 06-08hr    5188 embryo 08-10hr    9574 embryo 10-12hr    11784 embryo 12-14hr    8975 embryo 14-16hr    3327 embryo 16-18hr    4378 embryo 18-20hr    2833 embryo 20-22hr    5039 embryo 22-24hr    6366 larva L1    3437 larva L2    5270 larva L3 12hr old    3709 larva L3 puffstage 1-2    5883 larva L3 puffstage 3-6    7633 larva L3 puffstage 7-9    10519 white prepupae new    11115 white prepupae 12hr    7179 white prepupae 24hr    6193 pupae 2d postWPP    3818 pupae 3d postWPP    6657 pupae 4d postWPP    2015 adult male 01day    3302 adult male 05day    2735 adult male 30day    2362 adult female 01day    3263 adult female 05day    5740 adult female 30day    4934 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (5688) embryo 02-04hr  (7722) embryo 04-06hr  (5144) embryo 06-08hr  (5188) embryo 08-10hr  (9574) embryo 10-12hr  (11784) embryo 12-14hr  (8975) embryo 14-16hr  (3327) embryo 16-18hr  (4378) embryo 18-20hr  (2833) embryo 20-22hr  (5039) embryo 22-24hr  (6366) larva L1  (3437) larva L2  (5270) larva L3 12hr old  (3709) larva L3 puffstage 1-2  (5883) larva L3 puffstage 3-6  (7633) larva L3 puffstage 7-9  (10519) white prepupae new  (11115) white prepupae 12hr  (7179) white prepupae 24hr  (6193) pupae 2d postWPP  (3818) pupae 3d postWPP  (6657) pupae 4d postWPP  (2015) adult male 01day  (3302) adult male 05day  (2735) adult male 30day  (2362) adult female 01day  (3263) adult female 05day  (5740) adult female 30day  (4934) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (5688) embryo 02-04hr  (7722) embryo 04-06hr  (5144) embryo 06-08hr  (5188) embryo 08-10hr  (9574) embryo 10-12hr  (11784) embryo 12-14hr  (8975) embryo 14-16hr  (3327) embryo 16-18hr  (4378) embryo 18-20hr  (2833) embryo 20-22hr  (5039) embryo 22-24hr  (6366) larva L1  (3437) larva L2  (5270) larva L3 12hr old  (3709) larva L3 puffstage 1-2  (5883) larva L3 puffstage 3-6  (7633) larva L3 puffstage 7-9  (10519) white prepupae new  (11115) white prepupae 12hr  (7179) white prepupae 24hr  (6193) pupae 2d postWPP  (3818) pupae 3d postWPP  (6657) pupae 4d postWPP  2015 adult male 01day  (3302) adult male 05day  (2735) adult male 30day  2362 adult female 01day  (3263) adult female 05day  (5740) adult female 30day  (4934) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    5688 embryo 02-04hr    7722 embryo 04-06hr    5144 embryo 06-08hr    5188 embryo 08-10hr    9574 embryo 10-12hr  11784 embryo 12-14hr    8975 embryo 14-16hr    3327 embryo 16-18hr    4378 embryo 18-20hr    2833 embryo 20-22hr    5039 embryo 22-24hr    6366 larva L1    3437 larva L2    5270 larva L3 12hr old    3709 larva L3 puffstage 1-2    5883 larva L3 puffstage 3-6    7633 larva L3 puffstage 7-9  10519 white prepupae new  11115 white prepupae 12hr    7179 white prepupae 24hr    6193 pupae 2d postWPP    3818 pupae 3d postWPP    6657 pupae 4d postWPP    2015 adult male 01day    3302 adult male 05day    2735 adult male 30day    2362 adult female 01day    3263 adult female 05day    5740 adult female 30day    4934 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    5688 embryo 02-04hr    7722 embryo 04-06hr    5144 embryo 06-08hr    5188 embryo 08-10hr    9574 embryo 10-12hr    11784 embryo 12-14hr    8975 embryo 14-16hr    3327 embryo 16-18hr    4378 embryo 18-20hr    2833 embryo 20-22hr    5039 embryo 22-24hr    6366 larva L1    3437 larva L2    5270 larva L3 12hr old    3709 larva L3 puffstage 1-2    5883 larva L3 puffstage 3-6    7633 larva L3 puffstage 7-9    10519 white prepupae new    11115 white prepupae 12hr    7179 white prepupae 24hr    6193 pupae 2d postWPP    3818 pupae 3d postWPP    6657 pupae 4d postWPP    2015 adult male 01day    3302 adult male 05day    2735 adult male 30day    2362 adult female 01day    3263 adult female 05day    5740 adult female 30day    4934 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0036921    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0036921 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult fat body, adult testis, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0036921 expression level Tissue   Expression Level Larval Central Nervous System    1442.775 Larval Midgut    3252.5 Larval Hindgut    2054.5 Larval Malpighian Tubules    2574.2 Larval Fat Body    2076.8 Larval Salivary Gland    1689.9 Larval Trachea    2974.525 Larval Carcass    1879.8 Adult Head    1763.5 Adult Eye    4481.525 Adult Brain    1363.5 Adult Thoracic-Abdominal Ganglion    1243.5 Adult Crop    2101.6 Adult Midgut    2583.4 Adult Hindgut    1703.9 Adult Malpighian Tubules    1152.8 Adult Fat Body    342.2 Adult Salivary Gland    2905.2 Adult Heart    1076.525 Adult VirginFemale Spermatheca    1233.3 Adult InseminatedFemale Spermatheca    1381.6 Adult Ovary    1077.7 Adult Testis    147.8 Adult Male Accessory Gland    1650.8 Adult Carcass    427.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (1442.775) Larval Midgut  (3252.5) Larval Hindgut  (2054.5) Larval Malpighian Tubules  (2574.2) Larval Fat Body  (2076.8) Larval Salivary Gland  (1689.9) Larval Trachea  (2974.525) Larval Carcass  (1879.8) Adult Head  (1763.5) Adult Eye  (4481.525) Adult Brain  (1363.5) Adult Thoracic-Abdominal Ganglion  (1243.5) Adult Crop  (2101.6) Adult Midgut  (2583.4) Adult Hindgut  (1703.9) Adult Malpighian Tubules  (1152.8) Adult Fat Body    342.2 Adult Salivary Gland  (2905.2) Adult Heart  (1076.525) Adult VirginFemale Spermatheca  (1233.3) Adult InseminatedFemale Spermatheca  (1381.6) Adult Ovary  (1077.7) Adult Testis    147.8 Adult Male Accessory Gland  (1650.8) Adult Carcass    427.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (1442.775) Larval Midgut  (3252.5) Larval Hindgut  (2054.5) Larval Malpighian Tubules  (2574.2) Larval Fat Body  (2076.8) Larval Salivary Gland  (1689.9) Larval Trachea  (2974.525) Larval Carcass  (1879.8) Adult Head  (1763.5) Adult Eye  (4481.525) Adult Brain  (1363.5) Adult Thoracic-Abdominal Ganglion  (1243.5) Adult Crop  (2101.6) Adult Midgut  (2583.4) Adult Hindgut  (1703.9) Adult Malpighian Tubules  (1152.8) Adult Fat Body    342.2 Adult Salivary Gland  (2905.2) Adult Heart  1076.525 Adult VirginFemale Spermatheca  (1233.3) Adult InseminatedFemale Spermatheca  (1381.6) Adult Ovary  1077.7 Adult Testis    147.8 Adult Male Accessory Gland  (1650.8) Adult Carcass    427.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    1442.775 Larval Midgut    3252.5 Larval Hindgut    2054.5 Larval Malpighian Tubules    2574.2 Larval Fat Body    2076.8 Larval Salivary Gland    1689.9 Larval Trachea    2974.525 Larval Carcass    1879.8 Adult Head    1763.5 Adult Eye    4481.525 Adult Brain    1363.5 Adult Thoracic-Abdominal Ganglion    1243.5 Adult Crop    2101.6 Adult Midgut    2583.4 Adult Hindgut    1703.9 Adult Malpighian Tubules    1152.8 Adult Fat Body    342.2 Adult Salivary Gland    2905.2 Adult Heart    1076.525 Adult VirginFemale Spermatheca    1233.3 Adult InseminatedFemale Spermatheca    1381.6 Adult Ovary    1077.7 Adult Testis    147.8 Adult Male Accessory Gland    1650.8 Adult Carcass    427.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0036921 expression level Tissue   Expression Level Larval Central Nervous System    1442.775 Larval Midgut    3252.5 Larval Hindgut    2054.5 Larval Malpighian Tubules    2574.2 Larval Fat Body    2076.8 Larval Salivary Gland    1689.9 Larval Trachea    2974.525 Larval Carcass    1879.8 Adult Head    1763.5 Adult Eye    4481.525 Adult Brain    1363.5 Adult Thoracic-Abdominal Ganglion    1243.5 Adult Crop    2101.6 Adult Midgut    2583.4 Adult Hindgut    1703.9 Adult Malpighian Tubules    1152.8 Adult Fat Body    342.2 Adult Salivary Gland    2905.2 Adult Heart    1076.525 Adult VirginFemale Spermatheca    1233.3 Adult InseminatedFemale Spermatheca    1381.6 Adult Ovary    1077.7 Adult Testis    147.8 Adult Male Accessory Gland    1650.8 Adult Carcass    427.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (1442.775) Larval Midgut  (3252.5) Larval Hindgut  (2054.5) Larval Malpighian Tubules  (2574.2) Larval Fat Body  (2076.8) Larval Salivary Gland  (1689.9) Larval Trachea  (2974.525) Larval Carcass  (1879.8) Adult Head  (1763.5) Adult Eye  (4481.525) Adult Brain  (1363.5) Adult Thoracic-Abdominal Ganglion  (1243.5) Adult Crop  (2101.6) Adult Midgut  (2583.4) Adult Hindgut  (1703.9) Adult Malpighian Tubules  (1152.8) Adult Fat Body    342.2 Adult Salivary Gland  (2905.2) Adult Heart  (1076.525) Adult VirginFemale Spermatheca  (1233.3) Adult InseminatedFemale Spermatheca  (1381.6) Adult Ovary  (1077.7) Adult Testis    147.8 Adult Male Accessory Gland  (1650.8) Adult Carcass    427.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  1442.775 Larval Midgut  (3252.5) Larval Hindgut  (2054.5) Larval Malpighian Tubules  (2574.2) Larval Fat Body  (2076.8) Larval Salivary Gland  1689.9 Larval Trachea  (2974.525) Larval Carcass  (1879.8) Adult Head  (1763.5) Adult Eye  (4481.525) Adult Brain  1363.5 Adult Thoracic-Abdominal Ganglion  1243.5 Adult Crop  (2101.6) Adult Midgut  (2583.4) Adult Hindgut  1703.9 Adult Malpighian Tubules  1152.8 Adult Fat Body    342.2 Adult Salivary Gland  (2905.2) Adult Heart  1076.525 Adult VirginFemale Spermatheca  1233.3 Adult InseminatedFemale Spermatheca  1381.6 Adult Ovary  1077.7 Adult Testis    147.8 Adult Male Accessory Gland  1650.8 Adult Carcass    427.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    1442.775 Larval Midgut    3252.5 Larval Hindgut    2054.5 Larval Malpighian Tubules    2574.2 Larval Fat Body    2076.8 Larval Salivary Gland    1689.9 Larval Trachea    2974.525 Larval Carcass    1879.8 Adult Head    1763.5 Adult Eye    4481.525 Adult Brain    1363.5 Adult Thoracic-Abdominal Ganglion    1243.5 Adult Crop    2101.6 Adult Midgut    2583.4 Adult Hindgut    1703.9 Adult Malpighian Tubules    1152.8 Adult Fat Body    342.2 Adult Salivary Gland    2905.2 Adult Heart    1076.525 Adult VirginFemale Spermatheca    1233.3 Adult InseminatedFemale Spermatheca    1381.6 Adult Ovary    1077.7 Adult Testis    147.8 Adult Male Accessory Gland    1650.8 Adult Carcass    427.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    1763.5   NA  Eye    4481.525   NA  Brain    1363.5   1442.775  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    1243.5   NA  Crop    2101.6   3252.5  Midgut    2583.4   2054.5  Hindgut    1703.9   2574.2  Malpighian Tubules    1152.8   2076.8  Fat Body    342.2   1689.9  Salivary Gland    2905.2   NA  Heart    1076.525   2974.525  Trachea    NA   NA  VirginFemale Spermatheca    1233.3   NA  InseminatedFemale Spermatheca    1381.6   NA  Ovary    1077.7   NA  Testis    147.8   NA  Male Accessory Gland    1650.8   1879.8  Carcass    427.3 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_05
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036921 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7823-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for RhoGDI Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal RhoGDICB05226 viable RhoGDI11 viable, with Scer\GAL4pnr-MD237 RhoGDIGD10607 Phenotype manifest in Allele
Classical Alleles ( 13 )
For All Classical Alleles Show
Allele of RhoGDI Class Mutagen Stocks Known lesion RhoGDI11 1 Yes RhoGDI1 FLPase 1 Yes RhoGDIc06043 piggyBac transposase 1 -- RhoGDId10923 P-element activity 1 -- RhoGDIe04085 piggyBac transposase 1 -- RhoGDIEY02738 P-element activity 1 -- RhoGDINP0927 1 -- RhoGDIc06044 piggyBac transposase 0 -- RhoGDIc06360 0 -- RhoGDIc06523 0 -- RhoGDICB05226 P-element activity 0 Yes RhoGDId02024 P-element activity 0 -- RhoGDId05782 P-element activity 0 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of RhoGDI Class Mutagen Stocks Known lesion RhoGDIGD10607 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes RhoGDIKK109237 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10607} NA P{KK109237} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}RhoGDIEY02738 NA P{Mae-UAS.6.11}B0462B0462 NA P{XP}RhoGDId02024 NA P{XP}RhoGDId05782 NA P{XP}RhoGDId10923 NA P+PBac{XP3.RB5}RhoGDI1 NA insertion of enhancer trap binary system P{GawB}RhoGDINP0927 No miscellaneous insertions P{PTT-GB}RhoGDICB05226 NA P{UASp-YFP.ltd}RhoGDI11 NA PBac{PB}RhoGDIc06043 NA PBac{PB}RhoGDIc06044 NA PBac{PB}RhoGDIc06360 NA PBac{PB}RhoGDIc06523 NA PBac{RB}RhoGDIe04085 NA
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
Rho GDP-dissociation inhibitor activity inferred from sequence or structural similarity with UniProtKB:P52565 (FlyBase, 1992-)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
cytoplasm inferred from electronic annotation with InterPro:IPR000406 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions RhoGDI allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 65446 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0036921 DroID - A comprehensive database of gene and protein interactions. • FBgn0036921 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40179
Orthologs
Genome-wide drosophilid orthologs	Dana\GF23606 Dere\GG16070 Dgri\GH17059 Dmoj\GI11654 Dper\GL22671 Dpse\GA20609 Dsec\GM19691 Dsim\GD14840 Dvir\GJ11334 Dwil\GK16712 Dyak\GE19637
Curated drosophilid orthologs	Dpse\GA20609
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL012996-PA Aedes aegypti (mosquito) AGAP012168-PA Anopheles gambiae (mosquito) XP_393238.1 Apis mellifera (honey bee) XP_001952398.1 Acyrthosiphon pisum (pea aphid) At3g07880.1 Arabidopsis thaliana (wall cress) 85077 Batrachochytrium dendrobatidis (chytrid fungus) 64686 Branchiostoma floridae (lancelet) ENSBTAP00000007933 Bos taurus (bovine) CAL0003409 Candida albicans (a form of yeast) CN24869 Caenorhabditis brenneri (small nematode) CBP03519 Caenorhabditis briggsae (nematode) CE04595 Caenorhabditis elegans (worm) ENSCAFP00000008784 Canis familiaris (dog) CAGL0J09152g Candida glabrata (haploid yeast) ENSCINP00000026789 Ciona intestinalis (sea squirt) JA04306 Caenorhabditis japonica (nematode) cn07217 Cryptococcus neoformans (yeast-like fungus) CPIJ006485 Culex pipens (mosquito) ENSCPOP00000001659 Cavia porcellus (guinea pig) RP07859 Caenorhabditis remanei (nematode) ENSCSAVP00000000746 Ciona savignyi (sedentary tunicate) 116466 Capitella spl (polychaete worm) 121631 Capitella spl (polychaete worm) DDB0216235 Dictyostelium discoideum (amoeba) DEHA2B14388g Debaryomyces Hansenii (yeast) 230644 Daphnia pulex (daphnia) ENSDARP00000064310 Danio rerio (zebra fish) ENSECAP00000018049 Equus caballus (horse) XP_654522 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000024016 Gymnopilus aculeatus (mushroom) ENSGALP00000013738 Gallus gallus (chicken) GL50803_2925 Giardia lamblia (flagellated protozoan) 184873 Hypsipyla robusta (cedar shoot borer) ENSP00000269321 Homo sapiens (human) ISCW020878-PA Ixodes scapularis (deer tick) KLLA0F05313g Kluyveromyces lactis (yeast) 183614 Lottia gigantea (owl limpet) 32357 Monocosta brevicollis (choanoflagellate) ENSMODP00000003661 Monodelphis domestica (gray opossum) ENSMMUP00000000811 Macaca mulatta (rhesus monkey) ENSMUSP00000063714 Mus musculus (house mouse) 170702 Nematostella vectensis (starlet anemone) XP_001604074.1 Nasonia vitripennis (wasp) ENSOANP00000017892 Ornithorynchus anatinus (platypus) ENSORLP00000002026 Oryzias latipes (japanese killifish) LOC_Os06g21340.1 Oryza sativa (asian rice) PHUM005294-PA Pediculus humanus (human body louse) PP21428 Pristionchus pacificus (nematode) 127785 Physcomitrella patens (moss) 127844 Physcomitrella patens (moss) ENSPPYP00000009819 Pongo pygmaeus (orangutan) 72712 Phytophthora ramorum (sudden oak death pathogen) 130236 Phytophthora sojae (root rot pathogen) 761787 Populus trichocarpa (black cottonwood) ENSPTRP00000016637 Pan troglodytes (chimpanzee) ENSRNOP00000051840 Rattus norvegicus (norway rat) 4041378 Sorghum bicolor (sorghum) YDL135C Saccharomyces cerevisiae (budding yeast) Smp_045610 Schistosoma mansoni (trematode parasite) SPAC6F12.06 Schizosaccharomyces pombe (fission yeast) XP_001177559.1 Strongylocentrotus purpuratus (purple sea urchin) 63598 Trichoplax adhaerens (metazoa) XP_975797.1 Tribolium castaneum (red flour beetle) ENSTNIP00000014544 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000021391 Takifugu rubripes (pufferfish Takifugu) 3737.m00021 Tetrahymena thermophila (ciliate protozoa) 97193.m00071 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000004877 Xenopus tropicalis (frog) YALI0A07403g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV15502 LH17556 ISCW020878 FBgn0240421 FBgn0236974 FBgn0218714 FBgn0198594 FBgn0186513 FBgn0174591 JGI_V11_230644 FBgn0080603 FBgn0160262 FBgn0134414 FBgn0124530 FBgn0108305 FBgn0100600 CPIJ006485 BGIBMGA005672 ACYPI002806 GB10833 AGAP012168 AAEL012996 PB24659 PHUM422410 GLEAN_06730
Stocks & Reagents
Stocks Listed in FlyBase ( 10 )
Bloomington	28871 w*; P+PBac{XP3.RB5}RhoGDI1 9815 y1 w*; P{UASp-YFP.ltd}RhoGDI11 15880 y1 w67c23; P{EPgy2}RhoGDIEY02738
Harvard	- P{XP}RhoGDId10923 - PBac{PB}RhoGDIc06043 - PBac{RB}RhoGDIe04085
Kyoto	103819 w*; P{GawB}RhoGDINP0927 / TM3, Ser1
VDRC	v105765 P{KK109237}VIE-260B v46155 w1118 P{GD10607}v46155 v46154 w1118; P{GD10607}v46154
Genomic Clones ( 1 )
	BACR13N10 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 73 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD16419
Other clones	DPiM_LD16419
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LD15259 LD19580
Other clones	32452 35308 46257 47100 51377 51726 82680 120556 125613 163471 165533 178025 193022 214371.53 CK01.65D.G12 CK01.66A.G8 CK01.142B.H10 Dmel_dig_009566_0611_2560 Dmel_neb_011168_0669_2798 Dmel_neb_013044_0834_2349 Dmel_neb_013503_0944_2168 Dmel_neb_015838_0569_3022 EC00104 EC23479 EC29779 EC34192 EK053658 EK053760 EK104107 EK119061 EK140920 EK146141 EK151506 EK162058 EK165052 EK165810 EK185306 EK240540 EK247615 EK267733 EK283155 EK295953 EP03159 ESG0110c.E21.1_C03 RP004036456 RP004056175 RP004073719 RP004077806 RP004144065 RP004163265 RP004183674 RP004204980 RP004208915 RP004219614 RP004232161 RP004233676 RP004285368 RP004350804 RP004399836 RP004425280 RP004434749 RP004443211 RP004446242 RP004484457 RP004495707 RP004500761 RP004533034 RP004535598 RP004543108
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0036921 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40179
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: RhoGDI CG7823 (Magie et al., 2002)
Source for database merge of
Additional comments
Other Comments
	Area matching Drosophila ESTS AA441471 and AA540182 (inverted). These ESTs ahve sequence similarity to Mammalian RHO GDP-dissociation inhibitor genes. (Davies, 2001.3.15)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_140905 RefSeq (Proteins) • NP_649162 DDBJ / EMBL / GenBank • AA441471 AA540182 AAF49090 AAL28769 AW942418 AX094105 AY061221 CZ470448 CZ470449 CZ472574 CZ474726 CZ477505 CZ481840 CZ481841 Entrez Gene - A searchable database of RefSeq genes. • 40179 UniProtKB/TrEMBL • Q9VW59
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • RHO protein GDP dissociation inhibitor (IPR000406) Immunoglobulin E-set (IPR014756)
Linkouts
	BioGRID - A database of protein and genetic interactions • 65446 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0036921 DroID - A comprehensive database of gene and protein interactions. • FBgn0036921 DRSC - Results from RNAi screens. • FBgn0036921 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036921 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7823-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0036921 FlyReactome - A curated knowledgebase of Drosophila melanogaster pathways • 350954 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40179 InParanoid A subset of ortholog calls from InParanoid. • AAEL012996-PA Aedes aegypti (mosquito) AGAP012168-PA Anopheles gambiae (mosquito) XP_393238.1 Apis mellifera (honey bee) XP_001952398.1 Acyrthosiphon pisum (pea aphid) At3g07880.1 Arabidopsis thaliana (wall cress) 85077 Batrachochytrium dendrobatidis (chytrid fungus) 64686 Branchiostoma floridae (lancelet) ENSBTAP00000007933 Bos taurus (bovine) CAL0003409 Candida albicans (a form of yeast) CN24869 Caenorhabditis brenneri (small nematode) CBP03519 Caenorhabditis briggsae (nematode) CE04595 Caenorhabditis elegans (worm) ENSCAFP00000008784 Canis familiaris (dog) CAGL0J09152g Candida glabrata (haploid yeast) ENSCINP00000026789 Ciona intestinalis (sea squirt) JA04306 Caenorhabditis japonica (nematode) cn07217 Cryptococcus neoformans (yeast-like fungus) CPIJ006485 Culex pipens (mosquito) ENSCPOP00000001659 Cavia porcellus (guinea pig) RP07859 Caenorhabditis remanei (nematode) ENSCSAVP00000000746 Ciona savignyi (sedentary tunicate) 116466 Capitella spl (polychaete worm) 121631 Capitella spl (polychaete worm) DDB0216235 Dictyostelium discoideum (amoeba) DEHA2B14388g Debaryomyces Hansenii (yeast) 230644 Daphnia pulex (daphnia) ENSDARP00000064310 Danio rerio (zebra fish) ENSECAP00000018049 Equus caballus (horse) XP_654522 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000024016 Gymnopilus aculeatus (mushroom) ENSGALP00000013738 Gallus gallus (chicken) GL50803_2925 Giardia lamblia (flagellated protozoan) 184873 Hypsipyla robusta (cedar shoot borer) ENSP00000269321 Homo sapiens (human) ISCW020878-PA Ixodes scapularis (deer tick) KLLA0F05313g Kluyveromyces lactis (yeast) 183614 Lottia gigantea (owl limpet) 32357 Monocosta brevicollis (choanoflagellate) ENSMODP00000003661 Monodelphis domestica (gray opossum) ENSMMUP00000000811 Macaca mulatta (rhesus monkey) ENSMUSP00000063714 Mus musculus (house mouse) 170702 Nematostella vectensis (starlet anemone) XP_001604074.1 Nasonia vitripennis (wasp) ENSOANP00000017892 Ornithorynchus anatinus (platypus) ENSORLP00000002026 Oryzias latipes (japanese killifish) LOC_Os06g21340.1 Oryza sativa (asian rice) PHUM005294-PA Pediculus humanus (human body louse) PP21428 Pristionchus pacificus (nematode) 127785 Physcomitrella patens (moss) 127844 Physcomitrella patens (moss) ENSPPYP00000009819 Pongo pygmaeus (orangutan) 72712 Phytophthora ramorum (sudden oak death pathogen) 130236 Phytophthora sojae (root rot pathogen) 761787 Populus trichocarpa (black cottonwood) ENSPTRP00000016637 Pan troglodytes (chimpanzee) ENSRNOP00000051840 Rattus norvegicus (norway rat) 4041378 Sorghum bicolor (sorghum) YDL135C Saccharomyces cerevisiae (budding yeast) Smp_045610 Schistosoma mansoni (trematode parasite) SPAC6F12.06 Schizosaccharomyces pombe (fission yeast) XP_001177559.1 Strongylocentrotus purpuratus (purple sea urchin) 63598 Trichoplax adhaerens (metazoa) XP_975797.1 Tribolium castaneum (red flour beetle) ENSTNIP00000014544 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000021391 Takifugu rubripes (pufferfish Takifugu) 3737.m00021 Tetrahymena thermophila (ciliate protozoa) 97193.m00071 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000004877 Xenopus tropicalis (frog) YALI0A07403g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40179 modMine - Data generated by the modENCODE project. • FBgn0036921 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV15502 LH17556 ISCW020878 FBgn0240421 FBgn0236974 FBgn0218714 FBgn0198594 FBgn0186513 FBgn0174591 JGI_V11_230644 FBgn0080603 FBgn0160262 FBgn0134414 FBgn0124530 FBgn0108305 FBgn0100600 CPIJ006485 BGIBMGA005672 ACYPI002806 GB10833 AGAP012168 AAEL012996 PB24659 PHUM422410 GLEAN_06730
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	CG7823 (Xu et al., 2004, Magie et al., 2002, Giot et al., 2003, Grieder et al., 2007, Keleman et al., 2009.8.5, Monzo et al., 2010) RhoGDI (Buszczak et al., 2007, Zhang et al., 2007, Grieder et al., 2007, Cook, 2009.9.30, Zeitlinger et al., 2007, Monzo et al., 2010, Cooper et al., 2010)
Name Synonym	RhoGDI
Secondary FlyBase IDs
References ( 25 )
Generate a list of	All references relating to this gene ( 25 )
List References by type	Research paper  ( 5 ) Supplementary material  ( 6 ) Personal communication to FlyBase  ( 4 ) FlyBase analysis  ( 3 ) Patent  ( 1 ) DNA/RNA sequence record  ( 1 ) Computer file  ( 3 ) Automatic genome annotation  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 2 )
	Cooper et al., 2010, Genetics 185(3): 811--822 Molecular Genetic Analysis of Chd3 and Polytene Chromosome Region 76B-D in Drosophila melanogaster. [FBrf0211329] Monzo et al., 2010, Dev. Biol. 340(2): 408--418 Proteomic analysis reveals CCT is a target of Fragile X mental retardation protein regulation in Drosophila. [FBrf0210519] Show all research papers ...