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Gene Dmel\CG6597

General Information
Symbol	Dmel\CG6597	Species	D. melanogaster
Name		Annotation symbol	CG6597
Feature type	protein_coding_gene	FlyBase ID	FBgn0036967
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	77B2-77B2	Sequence location	3L:20,295,531..20,302,611 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG6597 (FBgn0036967). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Defective-in-cullin neddylation protein; Potentiating neddylation domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1628167_s_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of CG6597. Gene sequence location is 3L:20295531..20302611.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 77B2-77B2   Limits computationally determined from genome sequence between P{lacW}l(3)L1243L1243&P{lacW}Mi-2j3D4 and P{PZ}eRF100103
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG6597 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.45 Low-frequency RNA-seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG6597-RA FBtr0074837  NM_140947   1295   248 CG6597-RB FBtr0074838  NM_168842   1947   248 CG6597-RD FBtr0332775  NM_001202210   1427   213
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG6597-PA   FBpp0074606   28.7   248   5.42     NP_649204   AAF49037 CG6597-PB   FBpp0074607   28.7   248   5.42     NP_730510   AAN11626 CG6597-PD   FBpp0305010   24.8   213   4.48     NP_001189139   ADV37575
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Potentiating neddylation domain (IPR005176) Defective-in-cullin neddylation protein (IPR014764)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA246795   AA263764   AA264894   AA391417   AA392384   AA392803   AA438573   AA439176   AA735588   AE014296 AAF49037   AE014296 AAN11626   AE014296 ADV37575   AI403801   AI455169   AI512670   BG635726   BG637347   BI164934   BI172066   BI173728   BI228599   BI228957   BI234658   BI234783   BI238502   BI241307   BI368124   BI370072   BI484030   BI484635   BI580426   BI632929   BI640086   BP544606   BT012470   CO179533   CO185415   CO191696   CO288864   CO290840   CO307045   CO318263   CO336284   CO342399   CO343558   CO345524   EC057172   EC064310   EC068277   EC074924   EC196264   EC196478   EC214856   EC228862   EC230421   EC243633   EC252298   EC259773   EC260601   EC261416   ES688897   GH747737   GH749416   GH749643   GH749794   GH751738   GH751764   GH753983   GH754425   GH754777   GH755438   GH755669   GH759006   GH759488   GH760130   GH770661   GH772055   GH772097   GH772168   GH772469   GH772871   GH774657   GH776177   GH779913   GH780321   GH781308   GH781665   GH782018   GH782654   GH784166   GH784908   GH787010   GH787521   GH788196   GH788204   GH788340   GH788962   GH789105   GH789487   GH791524   GH792270   GH794241   GH794987   GH795316   GH795642   GH795775   GH799078   GH802029   GH802115   GH802315   GH802324   GH802955   GH803749   GH803962   GH804542   GH806281   GH806357   GH807964   GH811219   GH815537   GH816108   GH817421   GH818196   GH820473   GH821640   GH823955   GH824076   GH824917   GH826340   GH827879   GH828148   GH831905   GH833071   GH833510   GH834042   GH835700   GH838064   GH838686   GH838714   GH844114   GH844264   GH844303   GH845039   GH846213   GH846400   GH847346   GH847692   GH847839   GH848921   GH849093   GH849947   GH850216   GH850381   GH851609   GH851698   GH853521   GH854745   GH855186   GH856803   GH857069   GH857221   GH858098   GH859032   GH859470   GH859835   GH861730   GH861819   GH861860   GH863343   GH864071   GH864402   GH865231   GH865768   GH867415   GH867763   GH868200   GH868748   GH870329   GH870916   GH871152   GH872149   GH872464   GH872570   GH872785   GH872798   GH873073   GH873407   GH876812   GH877854   GH884071   GH884122   GH884809   GH886109   GH887008   GH888561   GH890100   GH890900   GH891198   GH894335   GH897409   GH897594   GH898802   GH899172   GH900451   GH901564   GH901611   GH903254   GH904950   GH906367   GH906469   GH907188   GH908247   GH909156   GH909276   GH910867   GH911880   GH912138   GH912993   GH913344   GH913520   GH913810   GH915442   GH917121   GH917418   GH917582   GH917798   GH918394   GH919288   GH919531   GH922151   GH922433   GH924138   GH924547   GH925479   GH925510   GH926451   GH928183   GH930496   GH930993   GH931248   GH932441   GH932956   GH935214   GH935342   GH936720   GH939025
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VWB1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    344.3 Larval Midgut    78.7 Larval Hindgut    150.2 Larval Malpighian Tubules    125.2 Larval Fat Body    141.2 Larval Salivary Gland    124.6 Larval Trachea    207.825 Larval Carcass    335.375 Adult Head    130.8 Adult Eye    143.9 Adult Brain    200.3 Adult Thoracic-Abdominal Ganglion    192.2 Adult Crop    276.6 Adult Midgut    74.8 Adult Hindgut    154.9 Adult Malpighian Tubules    101 Adult Fat Body    102.7 Adult Salivary Gland    148.1 Adult Heart    114.275 Adult VirginFemale Spermatheca    82.8 Adult InseminatedFemale Spermatheca    96.1 Adult Ovary    526.1 Adult Testis    269.8 Adult Male Accessory Gland    179.4 Adult Carcass    207.4 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    344.3 Larval Midgut    78.7 Larval Hindgut    150.2 Larval Malpighian Tubules    125.2 Larval Fat Body    141.2 Larval Salivary Gland    124.6 Larval Trachea    207.825 Larval Carcass    335.375 Adult Head    130.8 Adult Eye    143.9 Adult Brain    200.3 Adult Thoracic-Abdominal Ganglion    192.2 Adult Crop    276.6 Adult Midgut    74.8 Adult Hindgut    154.9 Adult Malpighian Tubules    101 Adult Fat Body    102.7 Adult Salivary Gland    148.1 Adult Heart    114.275 Adult VirginFemale Spermatheca    82.8 Adult InseminatedFemale Spermatheca    96.1 Adult Ovary  526.1 Adult Testis    269.8 Adult Male Accessory Gland    179.4 Adult Carcass    207.4 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    344.3 Larval Midgut    78.7 Larval Hindgut    150.2 Larval Malpighian Tubules    125.2 Larval Fat Body    141.2 Larval Salivary Gland    124.6 Larval Trachea    207.825 Larval Carcass    335.375 Adult Head    130.8 Adult Eye    143.9 Adult Brain    200.3 Adult Thoracic-Abdominal Ganglion    192.2 Adult Crop    276.6 Adult Midgut    74.8 Adult Hindgut    154.9 Adult Malpighian Tubules    101 Adult Fat Body    102.7 Adult Salivary Gland    148.1 Adult Heart    114.275 Adult VirginFemale Spermatheca    82.8 Adult InseminatedFemale Spermatheca    96.1 Adult Ovary    526.1 Adult Testis    269.8 Adult Male Accessory Gland    179.4 Adult Carcass    207.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    344.3 Larval Midgut    78.7 Larval Hindgut    150.2 Larval Malpighian Tubules    125.2 Larval Fat Body    141.2 Larval Salivary Gland    124.6 Larval Trachea    207.825 Larval Carcass    335.375 Adult Head    130.8 Adult Eye    143.9 Adult Brain    200.3 Adult Thoracic-Abdominal Ganglion    192.2 Adult Crop    276.6 Adult Midgut    74.8 Adult Hindgut    154.9 Adult Malpighian Tubules    101 Adult Fat Body    102.7 Adult Salivary Gland    148.1 Adult Heart    114.275 Adult VirginFemale Spermatheca    82.8 Adult InseminatedFemale Spermatheca    96.1 Adult Ovary    526.1 Adult Testis    269.8 Adult Male Accessory Gland    179.4 Adult Carcass    207.4 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    344.3 Larval Midgut    78.7 Larval Hindgut    150.2 Larval Malpighian Tubules    125.2 Larval Fat Body    141.2 Larval Salivary Gland    124.6 Larval Trachea    207.825 Larval Carcass    335.375 Adult Head    130.8 Adult Eye    143.9 Adult Brain    200.3 Adult Thoracic-Abdominal Ganglion    192.2 Adult Crop    276.6 Adult Midgut    74.8 Adult Hindgut    154.9 Adult Malpighian Tubules    101 Adult Fat Body    102.7 Adult Salivary Gland    148.1 Adult Heart    114.275 Adult VirginFemale Spermatheca    82.8 Adult InseminatedFemale Spermatheca    96.1 Adult Ovary    526.1 Adult Testis    269.8 Adult Male Accessory Gland    179.4 Adult Carcass    207.4 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    344.3 Larval Midgut    78.7 Larval Hindgut    150.2 Larval Malpighian Tubules    125.2 Larval Fat Body    141.2 Larval Salivary Gland    124.6 Larval Trachea    207.825 Larval Carcass    335.375 Adult Head    130.8 Adult Eye    143.9 Adult Brain    200.3 Adult Thoracic-Abdominal Ganglion    192.2 Adult Crop    276.6 Adult Midgut    74.8 Adult Hindgut    154.9 Adult Malpighian Tubules    101 Adult Fat Body    102.7 Adult Salivary Gland    148.1 Adult Heart    114.275 Adult VirginFemale Spermatheca    82.8 Adult InseminatedFemale Spermatheca    96.1 Adult Ovary  526.1 Adult Testis    269.8 Adult Male Accessory Gland    179.4 Adult Carcass    207.4 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    344.3 Larval Midgut    78.7 Larval Hindgut    150.2 Larval Malpighian Tubules    125.2 Larval Fat Body    141.2 Larval Salivary Gland    124.6 Larval Trachea    207.825 Larval Carcass    335.375 Adult Head    130.8 Adult Eye    143.9 Adult Brain    200.3 Adult Thoracic-Abdominal Ganglion    192.2 Adult Crop    276.6 Adult Midgut    74.8 Adult Hindgut    154.9 Adult Malpighian Tubules    101 Adult Fat Body    102.7 Adult Salivary Gland    148.1 Adult Heart    114.275 Adult VirginFemale Spermatheca    82.8 Adult InseminatedFemale Spermatheca    96.1 Adult Ovary    526.1 Adult Testis    269.8 Adult Male Accessory Gland    179.4 Adult Carcass    207.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    344.3 Larval Midgut    78.7 Larval Hindgut    150.2 Larval Malpighian Tubules    125.2 Larval Fat Body    141.2 Larval Salivary Gland    124.6 Larval Trachea    207.825 Larval Carcass    335.375 Adult Head    130.8 Adult Eye    143.9 Adult Brain    200.3 Adult Thoracic-Abdominal Ganglion    192.2 Adult Crop    276.6 Adult Midgut    74.8 Adult Hindgut    154.9 Adult Malpighian Tubules    101 Adult Fat Body    102.7 Adult Salivary Gland    148.1 Adult Heart    114.275 Adult VirginFemale Spermatheca    82.8 Adult InseminatedFemale Spermatheca    96.1 Adult Ovary    526.1 Adult Testis    269.8 Adult Male Accessory Gland    179.4 Adult Carcass    207.4 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    130.8   NA  Eye    143.9   NA  Brain    200.3   344.3  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    192.2   NA  Crop    276.6   78.7  Midgut    74.8   150.2  Hindgut    154.9   125.2  Malpighian Tubules    101   141.2  Fat Body    102.7   124.6  Salivary Gland    148.1   NA  Heart    114.275   207.825  Trachea    NA   NA  VirginFemale Spermatheca    82.8   NA  InseminatedFemale Spermatheca    96.1   NA  Ovary    526.1   NA  Testis    269.8   NA  Male Accessory Gland    179.4   335.375  Carcass    207.4 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    72 central nervous system, larvae L3    61 central nervous system, pupae P8    35 head, virgin 1-day female    23 head, virgin 4-day female    23 head, virgin 20-day female    11 head, mated 1-day female    27 head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male    28 head, mated 4-day male    32 head, mated 20-day male    30 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    24 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    11 digestive system, 4-day adult    23 digestive system, 20-day adult    13 fat body, larvae L3 wandering    11 fat body, white prepupae    28 fat body, pupae P8    44 carcass, larvae L3 wandering    32 carcass, 1-day adult    34 carcass, 4-day adult    32 carcass, 20-day adult    26 ovary, virgin 4-day female    93 ovary, mated 4-day female    113 testis, mated 4-day male    85 accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (72) central nervous system, larvae L3  (61) central nervous system, pupae P8  (35) head, virgin 1-day female    23 head, virgin 4-day female    23 head, virgin 20-day female    11 head, mated 1-day female  (27) head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male  (28) head, mated 4-day male  (32) head, mated 20-day male  (30) salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    24 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    11 digestive system, 4-day adult    23 digestive system, 20-day adult    13 fat body, larvae L3 wandering    11 fat body, white prepupae  (28) fat body, pupae P8  (44) carcass, larvae L3 wandering  (32) carcass, 1-day adult  (34) carcass, 4-day adult  (32) carcass, 20-day adult  26 ovary, virgin 4-day female  (93) ovary, mated 4-day female  (113) testis, mated 4-day male  (85) accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    72 central nervous system, larvae L3    61 central nervous system, pupae P8    35 head, virgin 1-day female    23 head, virgin 4-day female    23 head, virgin 20-day female    11 head, mated 1-day female    27 head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male    28 head, mated 4-day male    32 head, mated 20-day male    30 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    24 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    11 digestive system, 4-day adult    23 digestive system, 20-day adult    13 fat body, larvae L3 wandering    11 fat body, white prepupae    28 fat body, pupae P8    44 carcass, larvae L3 wandering    32 carcass, 1-day adult    34 carcass, 4-day adult    32 carcass, 20-day adult    26 ovary, virgin 4-day female    93 ovary, mated 4-day female  (113) testis, mated 4-day male    85 accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    72 central nervous system, larvae L3    61 central nervous system, pupae P8    35 head, virgin 1-day female    23 head, virgin 4-day female    23 head, virgin 20-day female    11 head, mated 1-day female    27 head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male    28 head, mated 4-day male    32 head, mated 20-day male    30 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    24 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    11 digestive system, 4-day adult    23 digestive system, 20-day adult    13 fat body, larvae L3 wandering    11 fat body, white prepupae    28 fat body, pupae P8    44 carcass, larvae L3 wandering    32 carcass, 1-day adult    34 carcass, 4-day adult    32 carcass, 20-day adult    26 ovary, virgin 4-day female    93 ovary, mated 4-day female    113 testis, mated 4-day male    85 accessory gland, mated 4-day male    20 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    72 central nervous system, larvae L3    61 central nervous system, pupae P8    35 head, virgin 1-day female    23 head, virgin 4-day female    23 head, virgin 20-day female    11 head, mated 1-day female    27 head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male    28 head, mated 4-day male    32 head, mated 20-day male    30 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    24 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    11 digestive system, 4-day adult    23 digestive system, 20-day adult    13 fat body, larvae L3 wandering    11 fat body, white prepupae    28 fat body, pupae P8    44 carcass, larvae L3 wandering    32 carcass, 1-day adult    34 carcass, 4-day adult    32 carcass, 20-day adult    26 ovary, virgin 4-day female    93 ovary, mated 4-day female    113 testis, mated 4-day male    85 accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (72) central nervous system, larvae L3  (61) central nervous system, pupae P8  (35) head, virgin 1-day female    23 head, virgin 4-day female    23 head, virgin 20-day female    11 head, mated 1-day female  27 head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male  28 head, mated 4-day male  32 head, mated 20-day male  30 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    24 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    11 digestive system, 4-day adult    23 digestive system, 20-day adult    13 fat body, larvae L3 wandering    11 fat body, white prepupae  28 fat body, pupae P8  (44) carcass, larvae L3 wandering  32 carcass, 1-day adult  (34) carcass, 4-day adult  32 carcass, 20-day adult  26 ovary, virgin 4-day female  (93) ovary, mated 4-day female  (113) testis, mated 4-day male  (85) accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    72 central nervous system, larvae L3    61 central nervous system, pupae P8    35 head, virgin 1-day female    23 head, virgin 4-day female    23 head, virgin 20-day female    11 head, mated 1-day female    27 head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male    28 head, mated 4-day male    32 head, mated 20-day male    30 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    24 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    11 digestive system, 4-day adult    23 digestive system, 20-day adult    13 fat body, larvae L3 wandering    11 fat body, white prepupae    28 fat body, pupae P8    44 carcass, larvae L3 wandering    32 carcass, 1-day adult    34 carcass, 4-day adult    32 carcass, 20-day adult    26 ovary, virgin 4-day female    93 ovary, mated 4-day female  113 testis, mated 4-day male    85 accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    72 central nervous system, larvae L3    61 central nervous system, pupae P8    35 head, virgin 1-day female    23 head, virgin 4-day female    23 head, virgin 20-day female    11 head, mated 1-day female    27 head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male    28 head, mated 4-day male    32 head, mated 20-day male    30 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    24 digestive system, larvae L3 wandering    20 digestive system, 1-day adult    11 digestive system, 4-day adult    23 digestive system, 20-day adult    13 fat body, larvae L3 wandering    11 fat body, white prepupae    28 fat body, pupae P8    44 carcass, larvae L3 wandering    32 carcass, 1-day adult    34 carcass, 4-day adult    32 carcass, 20-day adult    26 ovary, virgin 4-day female    93 ovary, mated 4-day female    113 testis, mated 4-day male    85 accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    61 embryo 02-04hr    83 embryo 04-06hr    56 embryo 06-08hr    58 embryo 08-10hr    61 embryo 10-12hr    40 embryo 12-14hr    44 embryo 14-16hr    25 embryo 16-18hr    24 embryo 18-20hr    19 embryo 20-22hr    41 embryo 22-24hr    43 larva L1    13 larva L2    12 larva L3 12hr old    10 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    23 white prepupae new    22 white prepupae 12hr    28 white prepupae 24hr    35 pupae 2d postWPP    30 pupae 3d postWPP    20 pupae 4d postWPP    24 adult male 01day    28 adult male 05day    34 adult male 30day    28 adult female 01day    19 adult female 05day    38 adult female 30day    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (61) embryo 02-04hr  (83) embryo 04-06hr  (56) embryo 06-08hr  (58) embryo 08-10hr  (61) embryo 10-12hr  (40) embryo 12-14hr  (44) embryo 14-16hr    25 embryo 16-18hr    24 embryo 18-20hr    19 embryo 20-22hr  (41) embryo 22-24hr  (43) larva L1    13 larva L2    12 larva L3 12hr old    10 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    23 white prepupae new    22 white prepupae 12hr  (28) white prepupae 24hr  (35) pupae 2d postWPP  (30) pupae 3d postWPP    20 pupae 4d postWPP    24 adult male 01day  (28) adult male 05day  (34) adult male 30day  (28) adult female 01day    19 adult female 05day  (38) adult female 30day  (35) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    61 embryo 02-04hr    83 embryo 04-06hr    56 embryo 06-08hr    58 embryo 08-10hr    61 embryo 10-12hr    40 embryo 12-14hr    44 embryo 14-16hr    25 embryo 16-18hr    24 embryo 18-20hr    19 embryo 20-22hr    41 embryo 22-24hr    43 larva L1    13 larva L2    12 larva L3 12hr old    10 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    23 white prepupae new    22 white prepupae 12hr    28 white prepupae 24hr    35 pupae 2d postWPP    30 pupae 3d postWPP    20 pupae 4d postWPP    24 adult male 01day    28 adult male 05day    34 adult male 30day    28 adult female 01day    19 adult female 05day    38 adult female 30day    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    61 embryo 02-04hr    83 embryo 04-06hr    56 embryo 06-08hr    58 embryo 08-10hr    61 embryo 10-12hr    40 embryo 12-14hr    44 embryo 14-16hr    25 embryo 16-18hr    24 embryo 18-20hr    19 embryo 20-22hr    41 embryo 22-24hr    43 larva L1    13 larva L2    12 larva L3 12hr old    10 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    23 white prepupae new    22 white prepupae 12hr    28 white prepupae 24hr    35 pupae 2d postWPP    30 pupae 3d postWPP    20 pupae 4d postWPP    24 adult male 01day    28 adult male 05day    34 adult male 30day    28 adult female 01day    19 adult female 05day    38 adult female 30day    35 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    61 embryo 02-04hr    83 embryo 04-06hr    56 embryo 06-08hr    58 embryo 08-10hr    61 embryo 10-12hr    40 embryo 12-14hr    44 embryo 14-16hr    25 embryo 16-18hr    24 embryo 18-20hr    19 embryo 20-22hr    41 embryo 22-24hr    43 larva L1    13 larva L2    12 larva L3 12hr old    10 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    23 white prepupae new    22 white prepupae 12hr    28 white prepupae 24hr    35 pupae 2d postWPP    30 pupae 3d postWPP    20 pupae 4d postWPP    24 adult male 01day    28 adult male 05day    34 adult male 30day    28 adult female 01day    19 adult female 05day    38 adult female 30day    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (61) embryo 02-04hr  (83) embryo 04-06hr  (56) embryo 06-08hr  (58) embryo 08-10hr  (61) embryo 10-12hr  (40) embryo 12-14hr  (44) embryo 14-16hr    25 embryo 16-18hr    24 embryo 18-20hr    19 embryo 20-22hr  (41) embryo 22-24hr  (43) larva L1    13 larva L2    12 larva L3 12hr old    10 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    23 white prepupae new    22 white prepupae 12hr  28 white prepupae 24hr  (35) pupae 2d postWPP  30 pupae 3d postWPP    20 pupae 4d postWPP    24 adult male 01day  28 adult male 05day  (34) adult male 30day  28 adult female 01day    19 adult female 05day  (38) adult female 30day  (35) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    61 embryo 02-04hr    83 embryo 04-06hr    56 embryo 06-08hr    58 embryo 08-10hr    61 embryo 10-12hr    40 embryo 12-14hr    44 embryo 14-16hr    25 embryo 16-18hr    24 embryo 18-20hr    19 embryo 20-22hr    41 embryo 22-24hr    43 larva L1    13 larva L2    12 larva L3 12hr old    10 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    23 white prepupae new    22 white prepupae 12hr    28 white prepupae 24hr    35 pupae 2d postWPP    30 pupae 3d postWPP    20 pupae 4d postWPP    24 adult male 01day    28 adult male 05day    34 adult male 30day    28 adult female 01day    19 adult female 05day    38 adult female 30day    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    61 embryo 02-04hr    83 embryo 04-06hr    56 embryo 06-08hr    58 embryo 08-10hr    61 embryo 10-12hr    40 embryo 12-14hr    44 embryo 14-16hr    25 embryo 16-18hr    24 embryo 18-20hr    19 embryo 20-22hr    41 embryo 22-24hr    43 larva L1    13 larva L2    12 larva L3 12hr old    10 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    23 white prepupae new    22 white prepupae 12hr    28 white prepupae 24hr    35 pupae 2d postWPP    30 pupae 3d postWPP    20 pupae 4d postWPP    24 adult male 01day    28 adult male 05day    34 adult male 30day    28 adult female 01day    19 adult female 05day    38 adult female 30day    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    83 Schneider line 2 Sg4    58 embryonic 1182-4H    69 embryonic GM2    75 embryonic Kc167    71 embryonic S1    62 embryonic S3    93 leg disc CME L1    118 wing disc CME-W2    53 wing disc ML-DmD8    42 wing disc ML-DmD9    77 wing disc ML-DmD16-c3    92 wing disc ML-DmD21    68 wing disc ML-DmD32    59 haltere disc ML-DmD17-c3    63 eye-antennal disc ML-DmD11    60 antennal disc ML-DmD20-c5    50 mixed discs ML-DmD4-c1    72 CNS ML-DmBG1-c1    92 CNS ML-DmBG2-c2    51 tumorous blood cells mbn2    33 ovary fGS/OSS    153 ovary OSC    272 ovary OSS    125 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (83) Schneider line 2 Sg4  (58) embryonic 1182-4H  (69) embryonic GM2  (75) embryonic Kc167  (71) embryonic S1  (62) embryonic S3  (93) leg disc CME L1  (118) wing disc CME-W2  (53) wing disc ML-DmD8  (42) wing disc ML-DmD9  (77) wing disc ML-DmD16-c3  (92) wing disc ML-DmD21  (68) wing disc ML-DmD32  (59) haltere disc ML-DmD17-c3  (63) eye-antennal disc ML-DmD11  (60) antennal disc ML-DmD20-c5  (50) mixed discs ML-DmD4-c1  (72) CNS ML-DmBG1-c1  (92) CNS ML-DmBG2-c2  (51) tumorous blood cells mbn2  (33) ovary fGS/OSS  (153) ovary OSC  (272) ovary OSS  (125) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    83 Schneider line 2 Sg4    58 embryonic 1182-4H    69 embryonic GM2    75 embryonic Kc167    71 embryonic S1    62 embryonic S3    93 leg disc CME L1  (118) wing disc CME-W2    53 wing disc ML-DmD8    42 wing disc ML-DmD9    77 wing disc ML-DmD16-c3    92 wing disc ML-DmD21    68 wing disc ML-DmD32    59 haltere disc ML-DmD17-c3    63 eye-antennal disc ML-DmD11    60 antennal disc ML-DmD20-c5    50 mixed discs ML-DmD4-c1    72 CNS ML-DmBG1-c1    92 CNS ML-DmBG2-c2    51 tumorous blood cells mbn2    33 ovary fGS/OSS  (153) ovary OSC  (272) ovary OSS  (125) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    83 Schneider line 2 Sg4    58 embryonic 1182-4H    69 embryonic GM2    75 embryonic Kc167    71 embryonic S1    62 embryonic S3    93 leg disc CME L1    118 wing disc CME-W2    53 wing disc ML-DmD8    42 wing disc ML-DmD9    77 wing disc ML-DmD16-c3    92 wing disc ML-DmD21    68 wing disc ML-DmD32    59 haltere disc ML-DmD17-c3    63 eye-antennal disc ML-DmD11    60 antennal disc ML-DmD20-c5    50 mixed discs ML-DmD4-c1    72 CNS ML-DmBG1-c1    92 CNS ML-DmBG2-c2    51 tumorous blood cells mbn2    33 ovary fGS/OSS    153 ovary OSC    272 ovary OSS    125 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    83 Schneider line 2 Sg4    58 embryonic 1182-4H    69 embryonic GM2    75 embryonic Kc167    71 embryonic S1    62 embryonic S3    93 leg disc CME L1    118 wing disc CME-W2    53 wing disc ML-DmD8    42 wing disc ML-DmD9    77 wing disc ML-DmD16-c3    92 wing disc ML-DmD21    68 wing disc ML-DmD32    59 haltere disc ML-DmD17-c3    63 eye-antennal disc ML-DmD11    60 antennal disc ML-DmD20-c5    50 mixed discs ML-DmD4-c1    72 CNS ML-DmBG1-c1    92 CNS ML-DmBG2-c2    51 tumorous blood cells mbn2    33 ovary fGS/OSS    153 ovary OSC    272 ovary OSS    125 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (83) Schneider line 2 Sg4  (58) embryonic 1182-4H  (69) embryonic GM2  (75) embryonic Kc167  (71) embryonic S1  (62) embryonic S3  (93) leg disc CME L1  (118) wing disc CME-W2  (53) wing disc ML-DmD8  (42) wing disc ML-DmD9  (77) wing disc ML-DmD16-c3  (92) wing disc ML-DmD21  (68) wing disc ML-DmD32  (59) haltere disc ML-DmD17-c3  (63) eye-antennal disc ML-DmD11  (60) antennal disc ML-DmD20-c5  (50) mixed discs ML-DmD4-c1  (72) CNS ML-DmBG1-c1  (92) CNS ML-DmBG2-c2  (51) tumorous blood cells mbn2  (33) ovary fGS/OSS  (153) ovary OSC  (272) ovary OSS  (125) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    83 Schneider line 2 Sg4    58 embryonic 1182-4H    69 embryonic GM2    75 embryonic Kc167    71 embryonic S1    62 embryonic S3    93 leg disc CME L1  118 wing disc CME-W2    53 wing disc ML-DmD8    42 wing disc ML-DmD9    77 wing disc ML-DmD16-c3    92 wing disc ML-DmD21    68 wing disc ML-DmD32    59 haltere disc ML-DmD17-c3    63 eye-antennal disc ML-DmD11    60 antennal disc ML-DmD20-c5    50 mixed discs ML-DmD4-c1    72 CNS ML-DmBG1-c1    92 CNS ML-DmBG2-c2    51 tumorous blood cells mbn2    33 ovary fGS/OSS  (153) ovary OSC  (272) ovary OSS  125 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    83 Schneider line 2 Sg4    58 embryonic 1182-4H    69 embryonic GM2    75 embryonic Kc167    71 embryonic S1    62 embryonic S3    93 leg disc CME L1    118 wing disc CME-W2    53 wing disc ML-DmD8    42 wing disc ML-DmD9    77 wing disc ML-DmD16-c3    92 wing disc ML-DmD21    68 wing disc ML-DmD32    59 haltere disc ML-DmD17-c3    63 eye-antennal disc ML-DmD11    60 antennal disc ML-DmD20-c5    50 mixed discs ML-DmD4-c1    72 CNS ML-DmBG1-c1    92 CNS ML-DmBG2-c2    51 tumorous blood cells mbn2    33 ovary fGS/OSS    153 ovary OSC    272 ovary OSS    125 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    29 heat shock, 4-day adult    38 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    52 Cadmium 100 mM 48 hrs, 4-day adult    111 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    132 Zinc 5 mM 12 hrs, larvae L3    27 Zinc 4.5 mM 48 hrs, 4-day adult    96 Ethanol 2.5% 3 hrs, larvae L3    61 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    101 Caffeine 25 mg/ml 48 hrs, 4-day adult    48 Paraquat 5 mM 48 hrs, 4-day adult    95 Paraquat 10 mM 48 hrs, 4-day adult    55 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (40) cold shock, 4-day adult  (29) heat shock, 4-day adult  (38) Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3  (28) Cadmium 50 mM 48 hrs, 4-day adult  (52) Cadmium 100 mM 48 hrs, 4-day adult  (111) Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult  (132) Zinc 5 mM 12 hrs, larvae L3  (27) Zinc 4.5 mM 48 hrs, 4-day adult  (96) Ethanol 2.5% 3 hrs, larvae L3  (61) Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (101) Caffeine 25 mg/ml 48 hrs, 4-day adult  (48) Paraquat 5 mM 48 hrs, 4-day adult  (95) Paraquat 10 mM 48 hrs, 4-day adult  (55) Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    29 heat shock, 4-day adult    38 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    52 Cadmium 100 mM 48 hrs, 4-day adult  (111) Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult  (132) Zinc 5 mM 12 hrs, larvae L3    27 Zinc 4.5 mM 48 hrs, 4-day adult    96 Ethanol 2.5% 3 hrs, larvae L3    61 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  101 Caffeine 25 mg/ml 48 hrs, 4-day adult    48 Paraquat 5 mM 48 hrs, 4-day adult    95 Paraquat 10 mM 48 hrs, 4-day adult    55 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    29 heat shock, 4-day adult    38 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    52 Cadmium 100 mM 48 hrs, 4-day adult    111 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    132 Zinc 5 mM 12 hrs, larvae L3    27 Zinc 4.5 mM 48 hrs, 4-day adult    96 Ethanol 2.5% 3 hrs, larvae L3    61 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    101 Caffeine 25 mg/ml 48 hrs, 4-day adult    48 Paraquat 5 mM 48 hrs, 4-day adult    95 Paraquat 10 mM 48 hrs, 4-day adult    55 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    29 heat shock, 4-day adult    38 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    52 Cadmium 100 mM 48 hrs, 4-day adult    111 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    132 Zinc 5 mM 12 hrs, larvae L3    27 Zinc 4.5 mM 48 hrs, 4-day adult    96 Ethanol 2.5% 3 hrs, larvae L3    61 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    101 Caffeine 25 mg/ml 48 hrs, 4-day adult    48 Paraquat 5 mM 48 hrs, 4-day adult    95 Paraquat 10 mM 48 hrs, 4-day adult    55 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (40) cold shock, 4-day adult  29 heat shock, 4-day adult  (38) Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3  28 Cadmium 50 mM 48 hrs, 4-day adult  (52) Cadmium 100 mM 48 hrs, 4-day adult  (111) Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult  (132) Zinc 5 mM 12 hrs, larvae L3  27 Zinc 4.5 mM 48 hrs, 4-day adult  (96) Ethanol 2.5% 3 hrs, larvae L3  (61) Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (101) Caffeine 25 mg/ml 48 hrs, 4-day adult  (48) Paraquat 5 mM 48 hrs, 4-day adult  (95) Paraquat 10 mM 48 hrs, 4-day adult  (55) Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    29 heat shock, 4-day adult    38 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    52 Cadmium 100 mM 48 hrs, 4-day adult  111 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult  132 Zinc 5 mM 12 hrs, larvae L3    27 Zinc 4.5 mM 48 hrs, 4-day adult    96 Ethanol 2.5% 3 hrs, larvae L3    61 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  101 Caffeine 25 mg/ml 48 hrs, 4-day adult    48 Paraquat 5 mM 48 hrs, 4-day adult    95 Paraquat 10 mM 48 hrs, 4-day adult    55 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    29 heat shock, 4-day adult    38 Cadmium 50 mM 6 hrs, larvae L3    17 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    52 Cadmium 100 mM 48 hrs, 4-day adult    111 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    132 Zinc 5 mM 12 hrs, larvae L3    27 Zinc 4.5 mM 48 hrs, 4-day adult    96 Ethanol 2.5% 3 hrs, larvae L3    61 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    101 Caffeine 25 mg/ml 48 hrs, 4-day adult    48 Paraquat 5 mM 48 hrs, 4-day adult    95 Paraquat 10 mM 48 hrs, 4-day adult    55 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_01 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • RE34983 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036967 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6597-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG6597GD12417 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG6597 Class Mutagen Stocks Known lesion CG6597EY21310 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG6597 Class Mutagen Stocks Known lesion CG6597GD12417 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG6597KK108602 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG6597KK108635 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG6597NIG.6597R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD12417} NA P{KK108602} NA P{KK108635} NA P{NIG.6597R} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}CG6597EY21310 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG6597 - CG11266 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG6597 - CG15735 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG6597 - CG3091 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG6597 - Hsc70-1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG6597 - P32 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG6597 - l(1)G0320 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG6597 allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0036967 DroID - A comprehensive database of gene and protein interactions. • FBgn0036967 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40231
Orthologs
OrthoDB Orthologs (41) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6GMVH6 Dipteran inclusive ortholog search EOG6XPQQV Insect inclusive ortholog search EOG6BCCJ7 Arthropod inclusive ortholog search EOG6QFTWH Metazoa inclusive ortholog search EOG61S2PM
Orthologs in Drosophila Species (EOG6GMVH6)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG6597     Drosophila simulans   Dsim\GD14870 Y   Drosophila sechellia   Dsec\GM22269 Y   Drosophila erecta   Dere\GG16098 Y   Drosophila yakuba   Dyak\GE23063 Y   Drosophila ananassae   Dana\GF10048 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA23691 Y   Drosophila persimilis   Dper\GL25128 Y   Drosophila willistoni   Dwil\GK16948 Y   Drosophila virilis   Dvir\GJ11578 Y   Drosophila mojavensis   Dmoj\GI11322 Y   Drosophila grimshawi   Dgri\GH14379 Y
Orthologs in non-Drosophila Dipterans (EOG6XPQQV)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL006847   Anopheles gambiae Malaria mosquito  Agam\AGAP002513   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ013212
Orthologs in non-Dipteran Insects (EOG6BCCJ7)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB52007   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG008805   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH24108   Atta cephalotes Leafcutter ant  Acep\ACEP19785   Camponotus floridanus Florida carpenter ant  Cflo\CFLO13177   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14767   Linepithema humile Argentine ant  Lhum\LH17014   Pogonomyrmex barbatus Red harvester ant  Pbar\PB24903   Solenopsis invicta Red fire ant  Sinv\SINV15794   Acyrthosiphon pisum Pea aphid  Apim\ACYPI004790   Bombyx mori Silkmoth  Bmor\BGIBMGA010990   Pediculus humanus Human body louse  Phum\PHUM357750   Tribolium castaneum Red flour beetle  Tcas\TC011556
Orthologs in non-Insect Arthropods (EOG6QFTWH)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_299692   Ixodes scapularis Deer tick  Isca\ISCW011085
Orthologs in non-Arthropod Metazoa (EOG61S2PM)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_023452gn   Danio rerio Zebrafish  Drer\dcun1d4   Danio rerio Zebrafish  Drer\dcun1d5   Xenopus tropicalis Western clawed frog  Xtro\LOC549057   Gallus gallus Domestic chicken  Ggal\DCUN1D4   Gallus gallus Domestic chicken  Ggal\DCUN1D5   Mus musculus House mouse  Mmus\Dcun1d4   Mus musculus House mouse  Mmus\Dcun1d5   Rattus norvegicus Norway rat  Rnor\Dcun1d4   Rattus norvegicus Norway rat  Rnor\Dcun1d5   Homo sapiens Human  Hsap\ENSG00000137692
Human Orthologs (1)
Gene OMIM HGNC Hsap\ENSG00000137692
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD14870 Drosophila sechellia Dsec\GM22269 Drosophila erecta Dere\GG16098 Drosophila yakuba Dyak\GE23063 Drosophila ananassae Dana\GF10048 Drosophila pseudoobscura pseudoobscura Dpse\GA23691 Drosophila persimilis Dper\GL25128 Drosophila willistoni Dwil\GK16948 Drosophila virilis Dvir\GJ11578 Drosophila mojavensis Dmoj\GI11322 Drosophila grimshawi Dgri\GH14379
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	22470 y1 w67c23; P{EPgy2}CG6597EY21310
VDRC	v104418 P{KK108635}VIE-260B v104778 P{KK108602}VIE-260B v28237 w1118; P{GD12417}v28237
Genomic Clones ( 1 )
	BACR16G09 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 240 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE34983
Other clones	DPiM_RE34983
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH23314 LD05772 LD07016 LD09532 LD09831 LD11237 LD12107 LD12380 LD13663 LD44609 RE04711 RE13996 RE16819 RE26187 RE26629 RE30401 RE30539 RE38341 RE54041 RE56459 RE67049 RE67766 RE74619 SD13204 SD15284 SD22869
Other clones	1886 69555 81160 147762 214255.49 214311.47 214543.45 557697 CK01.6A.D4 CK01.9D.E11 CK01.76B.D6 CK01.88B.C8 CK01.97A.B8 CK01.114D.F2 EC31682 EK009246 EK059647 EK069544 EK075337 EK253350 EK271204 EN12223 EP14833 EP17148 EP22220 FGC026G08 LD21581 RP003018434 RP003019258 RP003024561 RP003030940 RP003032985 RP003034838 RP003040963 RP003044807 RP003045285 RP003047048 RP003047285 RP003055833 RP003056597 RP003059081 RP003063972 RP003068820 RP003071508 RP003074295 RP003085139 RP003087877 RP003090245 RP003090315 RP003092324 RP003094977 RP003099324 RP003105194 RP003107190 RP003113518 RP003117574 RP003123103 RP003123332 RP003124050 RP003124908 RP003127630 RP003129720 RP003132963 RP003137238 RP003138667 RP003150233 RP003153984 RP003154667 RP003154791 RP003159089 RP003167454 RP003168404 RP003170605 RP003172478 RP003179927 RP003182860 RP003185391 RP003187350 RP003192784 RP003193109 RP003193775 RP003195145 RP003203922 RP003204735 RP003206007 RP003208034 RP003208262 RP003208705 RP003217020 RP003218079 RP003226782 RP003230573 RP003230972 RP003231870 RP003234439 RP003239889 RP003240285 RP003247277 RP003254391 RP003259517 RP003261191 RP003261980 RP003264016 RP003265837 RP003268225 RP003269545 RP003270922 RP003275056 RP003277050 RP003279964 RP003280052 RP003280697 RP003287269 RP003289104 RP003290535 RP003290729 RP003291018 RP003292365 RP003293735 RP003295078 RP003296380 RP003296787 RP003300533 RP003302269 RP003303574 RP003308365 RP003308981 RP003319981 RP003321298 RP003322487 RP003324199 RP003324902 RP003327988 RP003328753 RP003333918 RP003337476 RP003347696 RP003348460 RP003355031 RP003365491 RP003368785 RP003371811 RP003373904 RP003392137 RP003393112 RP003393153 RP003405310 RP003421360 RP003421642 RP003432529 RP003436028 RP003440206 RP003441806 RP003444108 RP003446873 RP003449490 RP003458969 RP003466412 RP003468180 RP003471613 RP003473599 RP003474136 RP003475347 RP003480238 RP003485721 RP003486422 RP003487901 RP003496544 RP003500583 RP003503040 RP003505187 RP003505700 RP003506837 RP003508227 RP003524965 RP003527544 RP003541282 RP003543307 RP003545323 RP003551629 RP003553217 RP003559063 RP003562001 RP003565705 RP003568154 RP003570866 RP003585343 RP003591980 RP003598294 RP003600129 RP003600384 RP003601738 RP003615517 RP003617159 RP003620475 RP003629584 RP003633083 RP003646598 RP003650233 RP003651030 RP003657170 RP003658543 RP003660862 RP003661557 RP003665003 RP003668535 RP003669348 RP003671086 RP003672289 RP003673254 RP003678059 RP003682761
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0036967 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40231
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_140947 NM_168842 NM_001202210 RefSeq (Proteins) • NP_649204 NP_730510 NP_001189139 DDBJ / EMBL / GenBank • AAF49037 AAN11626 ADV37575 BI238502 Entrez Gene - A searchable database of RefSeq genes. • 40231 UniProtKB/TrEMBL • Q9VWB1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Potentiating neddylation domain (IPR005176) Defective-in-cullin neddylation protein (IPR014764) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE34983
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0036967 DroID - A comprehensive database of gene and protein interactions. • FBgn0036967 DRSC - Results from RNAi screens. • FBgn0036967 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036967 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6597-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0036967 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40231 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40231 modMine - Data generated by the modENCODE project. • FBgn0036967
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG6597 (Keleman et al., 2009.8.5, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
References ( 11 )
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Bellen, 2006.8.3, MBBatch686_2.xml MBBatch686_2.xml [FBrf0191805] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]