• Home
• Tools
  • Tools Overview
  • Query Tools

    
    • QuickSearch
    • QueryBuilder
    • TermLink
    • CytoSearch
    • RNA-Seq Search
    • Interactions Browser
    • ImageBrowse
    • Find A Person
    • Google™ FlyBase
  • Genomic/Map Tools

    
    • BLAST
    • GBrowse
    • GBrowse 2 Beta
    • CytoSearch
    • Feature Mapper
    • Aberrations Maps
    • Chromosome Maps
    • Coordinates Converter
  • Retrieve/Convert

    
    • Batch Download
    • Coordinates Converter
    • ID Converter
  • Data Submission

    
    • Fast-Track Your Paper
    • Submit Personal Comm
    • Add A New Person
    • Update Person Info
  • People

    
    • Find A Person
    • Add A New Person
    • Update Person Info
• Files
  • Files Overview
  • Current release
  • Archived releases
  • Map Conversion
  • FTP site:
  • Releases (FTP)
  • Genomes (FTP)
• Species
  • Phylogeny
  • Sequenced Species
  • Synteny Table
  • Color Illustrations
  • Abbreviations
• Documents
  • About FlyBase
  • Reference Manual:
  • Sections
  • Contents
  • Nomenclature
  • Release Notes
• Resources
  • All Resources
  • Model Organisms
  • Stock Collections
  • Vectors & Constructs
  • Other links:
  • BDGP
  • DGRC
  • DIS by issue
  • FlyExpress
  • Interactive Fly
  • modENCODE
  • Textpresso for Fly
• News
  • News
  • FlyBase Forum
  • FlyBase Positions
  • Meetings
  • Courses
  • Fly Board
  • White papers
  • Funding
  • bionet.dros
• Help
  • Google™ FlyBase
  • Site Map
  • FAQs
  • FlyBase Guides
  • Video Tutorials
  • Report help
  • New to Flies
  • Pers. comm.
  • Author guidelines
  • Contact FlyBase
• Archives
  • Prior Release
  • Other Archives
  • Coordinate Converter

Gene Dmel\CG5618

General Information
Symbol	Dmel\CG5618	Species	D. melanogaster
Name		Annotation symbol	CG5618
Feature type	protein_coding_gene	FlyBase ID	FBgn0036975
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	77B5-77B5	Sequence location	3L:20,346,549..20,349,732 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG5618 (FBgn0036975). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: sulfinoalanine decarboxylase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: carboxylic acid metabolic process; proteolysis. 4 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Dipeptidyl-peptidase 3; Pyridoxal phosphate-dependent decarboxylase; Pyridoxal phosphate-dependent transferase; Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Pyridoxal phosphate-dependent transferase, major region, subdomain 2. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, larval/adult midgut, adult Malpighian tubules, larval/adult fat body, adult spermathecae, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult central nervous system, adult crop, larval/adult hindgut, larval Malpighian tubules, adult heart. Comments on Affy2 ProbeSet: ProbeSet 1623238_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG5618. Gene sequence location is 3L:20346549..20349732.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 77B5-77B5   Limits computationally determined from genome sequence between P{PZ}eRF100103 and P{EP}trblEP3519
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG5618 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.39 Gene model reviewed during 5.45 Low-frequency RNA-seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG5618-RA FBtr0078179  NM_140954   1938   510 CG5618-RD FBtr0331819  NM_001275177   2230   346 CG5618-RE FBtr0331820  NM_206402   1750   346
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG5618-PA   FBpp0077837   57.5   510   6.69     NP_649211   AAF51576 CG5618-PD   FBpp0304203   39.1   346   8.69     NP_001262106   AGB94799 CG5618-PE   FBpp0304204   39.1   346   8.69     NP_996124   AAS65077
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Pyridoxal phosphate-dependent decarboxylase (IPR002129) Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421) Pyridoxal phosphate-dependent transferase (IPR015424) Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (IPR015422) Dipeptidyl-peptidase 3 (IPR005317)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA698852   AE014296 AAF51576   AE014296 AAS65077   AE014296 AGB94799   AI294551   AI296768   AI296828   AW944138   AY061560 AAL29108   BG639847   BI581550   BI581673   BI606167   BI614708   BI628284   BT001516 AAN71271   CA805598   CO156410   CO182187   CO307776   CO341563   CZ488588   EC089031   EC259388   EC263041   GH944809
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VPH6 B7Z089 Q8IGZ7
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 13 -- 16   embryonic small intestine   (Fisher et al., 2012) embryonic/larval dorsal trunk   (Fisher et al., 2012) embryonic/larval fat body   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval posterior spiracle   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, larval/adult midgut, adult Malpighian tubules, larval/adult fat body, adult spermathecae, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult central nervous system, adult crop, larval/adult hindgut, larval Malpighian tubules, adult heart. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    41.35 Larval Midgut    504.8 Larval Hindgut    114.8 Larval Malpighian Tubules    345.5 Larval Fat Body    1996.8 Larval Salivary Gland    82.3 Larval Trachea    91.225 Larval Carcass    62.575 Adult Head    684.4 Adult Eye    263.925 Adult Brain    147 Adult Thoracic-Abdominal Ganglion    127.8 Adult Crop    119.7 Adult Midgut    794.6 Adult Hindgut    147.9 Adult Malpighian Tubules    720.3 Adult Fat Body    540 Adult Salivary Gland    73.2 Adult Heart    332.425 Adult VirginFemale Spermatheca    621 Adult InseminatedFemale Spermatheca    903.9 Adult Ovary    10.5 Adult Testis    14.6 Adult Male Accessory Gland    54.5 Adult Carcass    546.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    41.35 Larval Midgut  504.8 Larval Hindgut    114.8 Larval Malpighian Tubules    345.5 Larval Fat Body  (1996.8) Larval Salivary Gland    82.3 Larval Trachea    91.225 Larval Carcass    62.575 Adult Head  (684.4) Adult Eye    263.925 Adult Brain    147 Adult Thoracic-Abdominal Ganglion    127.8 Adult Crop    119.7 Adult Midgut  (794.6) Adult Hindgut    147.9 Adult Malpighian Tubules  (720.3) Adult Fat Body  (540) Adult Salivary Gland    73.2 Adult Heart    332.425 Adult VirginFemale Spermatheca  (621) Adult InseminatedFemale Spermatheca  (903.9) Adult Ovary    10.5 Adult Testis    14.6 Adult Male Accessory Gland    54.5 Adult Carcass  (546.6) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    41.35 Larval Midgut    504.8 Larval Hindgut    114.8 Larval Malpighian Tubules    345.5 Larval Fat Body  (1996.8) Larval Salivary Gland    82.3 Larval Trachea    91.225 Larval Carcass    62.575 Adult Head    684.4 Adult Eye    263.925 Adult Brain    147 Adult Thoracic-Abdominal Ganglion    127.8 Adult Crop    119.7 Adult Midgut    794.6 Adult Hindgut    147.9 Adult Malpighian Tubules    720.3 Adult Fat Body    540 Adult Salivary Gland    73.2 Adult Heart    332.425 Adult VirginFemale Spermatheca    621 Adult InseminatedFemale Spermatheca    903.9 Adult Ovary    10.5 Adult Testis    14.6 Adult Male Accessory Gland    54.5 Adult Carcass    546.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    41.35 Larval Midgut    504.8 Larval Hindgut    114.8 Larval Malpighian Tubules    345.5 Larval Fat Body    1996.8 Larval Salivary Gland    82.3 Larval Trachea    91.225 Larval Carcass    62.575 Adult Head    684.4 Adult Eye    263.925 Adult Brain    147 Adult Thoracic-Abdominal Ganglion    127.8 Adult Crop    119.7 Adult Midgut    794.6 Adult Hindgut    147.9 Adult Malpighian Tubules    720.3 Adult Fat Body    540 Adult Salivary Gland    73.2 Adult Heart    332.425 Adult VirginFemale Spermatheca    621 Adult InseminatedFemale Spermatheca    903.9 Adult Ovary    10.5 Adult Testis    14.6 Adult Male Accessory Gland    54.5 Adult Carcass    546.6 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    41.35 Larval Midgut    504.8 Larval Hindgut    114.8 Larval Malpighian Tubules    345.5 Larval Fat Body    1996.8 Larval Salivary Gland    82.3 Larval Trachea    91.225 Larval Carcass    62.575 Adult Head    684.4 Adult Eye    263.925 Adult Brain    147 Adult Thoracic-Abdominal Ganglion    127.8 Adult Crop    119.7 Adult Midgut    794.6 Adult Hindgut    147.9 Adult Malpighian Tubules    720.3 Adult Fat Body    540 Adult Salivary Gland    73.2 Adult Heart    332.425 Adult VirginFemale Spermatheca    621 Adult InseminatedFemale Spermatheca    903.9 Adult Ovary    10.5 Adult Testis    14.6 Adult Male Accessory Gland    54.5 Adult Carcass    546.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    41.35 Larval Midgut  504.8 Larval Hindgut    114.8 Larval Malpighian Tubules    345.5 Larval Fat Body  (1996.8) Larval Salivary Gland    82.3 Larval Trachea    91.225 Larval Carcass    62.575 Adult Head  684.4 Adult Eye    263.925 Adult Brain    147 Adult Thoracic-Abdominal Ganglion    127.8 Adult Crop    119.7 Adult Midgut  794.6 Adult Hindgut    147.9 Adult Malpighian Tubules  720.3 Adult Fat Body  540 Adult Salivary Gland    73.2 Adult Heart    332.425 Adult VirginFemale Spermatheca  621 Adult InseminatedFemale Spermatheca  (903.9) Adult Ovary    10.5 Adult Testis    14.6 Adult Male Accessory Gland    54.5 Adult Carcass  546.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    41.35 Larval Midgut    504.8 Larval Hindgut    114.8 Larval Malpighian Tubules    345.5 Larval Fat Body  (1996.8) Larval Salivary Gland    82.3 Larval Trachea    91.225 Larval Carcass    62.575 Adult Head    684.4 Adult Eye    263.925 Adult Brain    147 Adult Thoracic-Abdominal Ganglion    127.8 Adult Crop    119.7 Adult Midgut    794.6 Adult Hindgut    147.9 Adult Malpighian Tubules    720.3 Adult Fat Body    540 Adult Salivary Gland    73.2 Adult Heart    332.425 Adult VirginFemale Spermatheca    621 Adult InseminatedFemale Spermatheca    903.9 Adult Ovary    10.5 Adult Testis    14.6 Adult Male Accessory Gland    54.5 Adult Carcass    546.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    41.35 Larval Midgut    504.8 Larval Hindgut    114.8 Larval Malpighian Tubules    345.5 Larval Fat Body    1996.8 Larval Salivary Gland    82.3 Larval Trachea    91.225 Larval Carcass    62.575 Adult Head    684.4 Adult Eye    263.925 Adult Brain    147 Adult Thoracic-Abdominal Ganglion    127.8 Adult Crop    119.7 Adult Midgut    794.6 Adult Hindgut    147.9 Adult Malpighian Tubules    720.3 Adult Fat Body    540 Adult Salivary Gland    73.2 Adult Heart    332.425 Adult VirginFemale Spermatheca    621 Adult InseminatedFemale Spermatheca    903.9 Adult Ovary    10.5 Adult Testis    14.6 Adult Male Accessory Gland    54.5 Adult Carcass    546.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    684.4   NA  Eye    263.925   NA  Brain    147   41.35  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    127.8   NA  Crop    119.7   504.8  Midgut    794.6   114.8  Hindgut    147.9   345.5  Malpighian Tubules    720.3   1996.8  Fat Body    540   82.3  Salivary Gland    73.2   NA  Heart    332.425   91.225  Trachea    NA   NA  VirginFemale Spermatheca    621   NA  InseminatedFemale Spermatheca    903.9   NA  Ovary    no informative data   NA  Testis    14.6   NA  Male Accessory Gland    54.5   62.575  Carcass    546.6 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    11 central nervous system, pupae P8    16 head, virgin 1-day female    27 head, virgin 4-day female    18 head, virgin 20-day female    31 head, mated 1-day female    17 head, mated 4-day female    29 head, mated 20-day female    30 head, mated 1-day male    26 head, mated 4-day male    34 head, mated 20-day male    31 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    40 digestive system, larvae L3 wandering    22 digestive system, 1-day adult    35 digestive system, 4-day adult    23 digestive system, 20-day adult    28 fat body, larvae L3 wandering    8 fat body, white prepupae    373 fat body, pupae P8    44 carcass, larvae L3 wandering    18 carcass, 1-day adult    14 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    11 central nervous system, pupae P8    16 head, virgin 1-day female  (27) head, virgin 4-day female    18 head, virgin 20-day female  (31) head, mated 1-day female    17 head, mated 4-day female  (29) head, mated 20-day female  (30) head, mated 1-day male  26 head, mated 4-day male  (34) head, mated 20-day male  (31) salivary gland, larvae L3 wandering    5 salivary gland, white prepupae  (40) digestive system, larvae L3 wandering    22 digestive system, 1-day adult  (35) digestive system, 4-day adult    23 digestive system, 20-day adult  (28) fat body, larvae L3 wandering    8 fat body, white prepupae  (373) fat body, pupae P8  (44) carcass, larvae L3 wandering    18 carcass, 1-day adult    14 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    11 central nervous system, pupae P8    16 head, virgin 1-day female    27 head, virgin 4-day female    18 head, virgin 20-day female    31 head, mated 1-day female    17 head, mated 4-day female    29 head, mated 20-day female    30 head, mated 1-day male    26 head, mated 4-day male    34 head, mated 20-day male    31 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    40 digestive system, larvae L3 wandering    22 digestive system, 1-day adult    35 digestive system, 4-day adult    23 digestive system, 20-day adult    28 fat body, larvae L3 wandering    8 fat body, white prepupae  (373) fat body, pupae P8    44 carcass, larvae L3 wandering    18 carcass, 1-day adult    14 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    11 central nervous system, pupae P8    16 head, virgin 1-day female    27 head, virgin 4-day female    18 head, virgin 20-day female    31 head, mated 1-day female    17 head, mated 4-day female    29 head, mated 20-day female    30 head, mated 1-day male    26 head, mated 4-day male    34 head, mated 20-day male    31 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    40 digestive system, larvae L3 wandering    22 digestive system, 1-day adult    35 digestive system, 4-day adult    23 digestive system, 20-day adult    28 fat body, larvae L3 wandering    8 fat body, white prepupae    373 fat body, pupae P8    44 carcass, larvae L3 wandering    18 carcass, 1-day adult    14 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    11 central nervous system, pupae P8    16 head, virgin 1-day female    27 head, virgin 4-day female    18 head, virgin 20-day female    31 head, mated 1-day female    17 head, mated 4-day female    29 head, mated 20-day female    30 head, mated 1-day male    26 head, mated 4-day male    34 head, mated 20-day male    31 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    40 digestive system, larvae L3 wandering    22 digestive system, 1-day adult    35 digestive system, 4-day adult    23 digestive system, 20-day adult    28 fat body, larvae L3 wandering    8 fat body, white prepupae    373 fat body, pupae P8    44 carcass, larvae L3 wandering    18 carcass, 1-day adult    14 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    11 central nervous system, pupae P8    16 head, virgin 1-day female  27 head, virgin 4-day female    18 head, virgin 20-day female  31 head, mated 1-day female    17 head, mated 4-day female  29 head, mated 20-day female  30 head, mated 1-day male  26 head, mated 4-day male  (34) head, mated 20-day male  31 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae  (40) digestive system, larvae L3 wandering    22 digestive system, 1-day adult  (35) digestive system, 4-day adult    23 digestive system, 20-day adult  28 fat body, larvae L3 wandering    8 fat body, white prepupae  (373) fat body, pupae P8  (44) carcass, larvae L3 wandering    18 carcass, 1-day adult    14 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    11 central nervous system, pupae P8    16 head, virgin 1-day female    27 head, virgin 4-day female    18 head, virgin 20-day female    31 head, mated 1-day female    17 head, mated 4-day female    29 head, mated 20-day female    30 head, mated 1-day male    26 head, mated 4-day male    34 head, mated 20-day male    31 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    40 digestive system, larvae L3 wandering    22 digestive system, 1-day adult    35 digestive system, 4-day adult    23 digestive system, 20-day adult    28 fat body, larvae L3 wandering    8 fat body, white prepupae  (373) fat body, pupae P8    44 carcass, larvae L3 wandering    18 carcass, 1-day adult    14 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    11 central nervous system, pupae P8    16 head, virgin 1-day female    27 head, virgin 4-day female    18 head, virgin 20-day female    31 head, mated 1-day female    17 head, mated 4-day female    29 head, mated 20-day female    30 head, mated 1-day male    26 head, mated 4-day male    34 head, mated 20-day male    31 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    40 digestive system, larvae L3 wandering    22 digestive system, 1-day adult    35 digestive system, 4-day adult    23 digestive system, 20-day adult    28 fat body, larvae L3 wandering    8 fat body, white prepupae    373 fat body, pupae P8    44 carcass, larvae L3 wandering    18 carcass, 1-day adult    14 carcass, 4-day adult    18 carcass, 20-day adult    14 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    2 embryo 04-06hr    6 embryo 06-08hr    13 embryo 08-10hr    18 embryo 10-12hr    17 embryo 12-14hr    23 embryo 14-16hr    20 embryo 16-18hr    18 embryo 18-20hr    15 embryo 20-22hr    20 embryo 22-24hr    22 larva L1    19 larva L2    23 larva L3 12hr old    13 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    90 white prepupae new    163 white prepupae 12hr    73 white prepupae 24hr    63 pupae 2d postWPP    69 pupae 3d postWPP    32 pupae 4d postWPP    17 adult male 01day    33 adult male 05day    23 adult male 30day    20 adult female 01day    26 adult female 05day    16 adult female 30day    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    2 embryo 04-06hr    6 embryo 06-08hr    13 embryo 08-10hr    18 embryo 10-12hr    17 embryo 12-14hr    23 embryo 14-16hr    20 embryo 16-18hr    18 embryo 18-20hr    15 embryo 20-22hr    20 embryo 22-24hr    22 larva L1    19 larva L2    23 larva L3 12hr old    13 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6  (35) larva L3 puffstage 7-9  (90) white prepupae new  (163) white prepupae 12hr  (73) white prepupae 24hr  (63) pupae 2d postWPP  (69) pupae 3d postWPP  (32) pupae 4d postWPP    17 adult male 01day  (33) adult male 05day    23 adult male 30day    20 adult female 01day  26 adult female 05day    16 adult female 30day    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    2 embryo 04-06hr    6 embryo 06-08hr    13 embryo 08-10hr    18 embryo 10-12hr    17 embryo 12-14hr    23 embryo 14-16hr    20 embryo 16-18hr    18 embryo 18-20hr    15 embryo 20-22hr    20 embryo 22-24hr    22 larva L1    19 larva L2    23 larva L3 12hr old    13 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    90 white prepupae new  (163) white prepupae 12hr    73 white prepupae 24hr    63 pupae 2d postWPP    69 pupae 3d postWPP    32 pupae 4d postWPP    17 adult male 01day    33 adult male 05day    23 adult male 30day    20 adult female 01day    26 adult female 05day    16 adult female 30day    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    2 embryo 04-06hr    6 embryo 06-08hr    13 embryo 08-10hr    18 embryo 10-12hr    17 embryo 12-14hr    23 embryo 14-16hr    20 embryo 16-18hr    18 embryo 18-20hr    15 embryo 20-22hr    20 embryo 22-24hr    22 larva L1    19 larva L2    23 larva L3 12hr old    13 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    90 white prepupae new    163 white prepupae 12hr    73 white prepupae 24hr    63 pupae 2d postWPP    69 pupae 3d postWPP    32 pupae 4d postWPP    17 adult male 01day    33 adult male 05day    23 adult male 30day    20 adult female 01day    26 adult female 05day    16 adult female 30day    18 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    2 embryo 04-06hr    6 embryo 06-08hr    13 embryo 08-10hr    18 embryo 10-12hr    17 embryo 12-14hr    23 embryo 14-16hr    20 embryo 16-18hr    18 embryo 18-20hr    15 embryo 20-22hr    20 embryo 22-24hr    22 larva L1    19 larva L2    23 larva L3 12hr old    13 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    90 white prepupae new    163 white prepupae 12hr    73 white prepupae 24hr    63 pupae 2d postWPP    69 pupae 3d postWPP    32 pupae 4d postWPP    17 adult male 01day    33 adult male 05day    23 adult male 30day    20 adult female 01day    26 adult female 05day    16 adult female 30day    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    2 embryo 04-06hr    6 embryo 06-08hr    13 embryo 08-10hr    18 embryo 10-12hr    17 embryo 12-14hr    23 embryo 14-16hr    20 embryo 16-18hr    18 embryo 18-20hr    15 embryo 20-22hr    20 embryo 22-24hr    22 larva L1    19 larva L2    23 larva L3 12hr old    13 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6  (35) larva L3 puffstage 7-9  (90) white prepupae new  (163) white prepupae 12hr  (73) white prepupae 24hr  (63) pupae 2d postWPP  (69) pupae 3d postWPP  32 pupae 4d postWPP    17 adult male 01day  (33) adult male 05day    23 adult male 30day    20 adult female 01day  26 adult female 05day    16 adult female 30day    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    2 embryo 04-06hr    6 embryo 06-08hr    13 embryo 08-10hr    18 embryo 10-12hr    17 embryo 12-14hr    23 embryo 14-16hr    20 embryo 16-18hr    18 embryo 18-20hr    15 embryo 20-22hr    20 embryo 22-24hr    22 larva L1    19 larva L2    23 larva L3 12hr old    13 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    90 white prepupae new  (163) white prepupae 12hr    73 white prepupae 24hr    63 pupae 2d postWPP    69 pupae 3d postWPP    32 pupae 4d postWPP    17 adult male 01day    33 adult male 05day    23 adult male 30day    20 adult female 01day    26 adult female 05day    16 adult female 30day    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    2 embryo 04-06hr    6 embryo 06-08hr    13 embryo 08-10hr    18 embryo 10-12hr    17 embryo 12-14hr    23 embryo 14-16hr    20 embryo 16-18hr    18 embryo 18-20hr    15 embryo 20-22hr    20 embryo 22-24hr    22 larva L1    19 larva L2    23 larva L3 12hr old    13 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    90 white prepupae new    163 white prepupae 12hr    73 white prepupae 24hr    63 pupae 2d postWPP    69 pupae 3d postWPP    32 pupae 4d postWPP    17 adult male 01day    33 adult male 05day    23 adult male 30day    20 adult female 01day    26 adult female 05day    16 adult female 30day    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    19 embryonic GM2    9 embryonic Kc167    22 embryonic S1    4 embryonic S3    19 leg disc CME L1    11 wing disc CME-W2    10 wing disc ML-DmD8    7 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    3 wing disc ML-DmD21    3 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    3 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    3 CNS ML-DmBG1-c1    4 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    3 ovary fGS/OSS    8 ovary OSC    8 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    19 embryonic GM2    9 embryonic Kc167    22 embryonic S1    4 embryonic S3    19 leg disc CME L1    11 wing disc CME-W2    10 wing disc ML-DmD8    7 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    3 wing disc ML-DmD21    3 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    3 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    3 CNS ML-DmBG1-c1    4 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    3 ovary fGS/OSS    8 ovary OSC    8 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    19 embryonic GM2    9 embryonic Kc167    22 embryonic S1    4 embryonic S3    19 leg disc CME L1    11 wing disc CME-W2    10 wing disc ML-DmD8    7 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    3 wing disc ML-DmD21    3 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    3 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    3 CNS ML-DmBG1-c1    4 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    3 ovary fGS/OSS    8 ovary OSC    8 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    19 embryonic GM2    9 embryonic Kc167    22 embryonic S1    4 embryonic S3    19 leg disc CME L1    11 wing disc CME-W2    10 wing disc ML-DmD8    7 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    3 wing disc ML-DmD21    3 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    3 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    3 CNS ML-DmBG1-c1    4 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    3 ovary fGS/OSS    8 ovary OSC    8 ovary OSS    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    19 embryonic GM2    9 embryonic Kc167    22 embryonic S1    4 embryonic S3    19 leg disc CME L1    11 wing disc CME-W2    10 wing disc ML-DmD8    7 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    3 wing disc ML-DmD21    3 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    3 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    3 CNS ML-DmBG1-c1    4 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    3 ovary fGS/OSS    8 ovary OSC    8 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    19 embryonic GM2    9 embryonic Kc167    22 embryonic S1    4 embryonic S3    19 leg disc CME L1    11 wing disc CME-W2    10 wing disc ML-DmD8    7 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    3 wing disc ML-DmD21    3 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    3 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    3 CNS ML-DmBG1-c1    4 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    3 ovary fGS/OSS    8 ovary OSC    8 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    19 embryonic GM2    9 embryonic Kc167    22 embryonic S1    4 embryonic S3    19 leg disc CME L1    11 wing disc CME-W2    10 wing disc ML-DmD8    7 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    3 wing disc ML-DmD21    3 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    3 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    3 CNS ML-DmBG1-c1    4 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    3 ovary fGS/OSS    8 ovary OSC    8 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    19 embryonic GM2    9 embryonic Kc167    22 embryonic S1    4 embryonic S3    19 leg disc CME L1    11 wing disc CME-W2    10 wing disc ML-DmD8    7 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    3 wing disc ML-DmD21    3 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    3 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    3 CNS ML-DmBG1-c1    4 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    3 ovary fGS/OSS    8 ovary OSC    8 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    19 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3    32 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    15 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    14 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    19 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3  (32) Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    15 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    14 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    19 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3    32 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    15 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    14 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    19 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3    32 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    15 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    14 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    19 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3    32 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    15 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    14 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    19 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3  32 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    15 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    14 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    19 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3    32 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    15 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    14 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    19 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3    32 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    15 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    14 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    10 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_25
External Data & Images
Linkouts	BDGP expression data • LP10922 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036975 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5618-RA;CG7415-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG5618 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG5618f05961 Sterility Allele fertile CG5618f05961 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG5618 Class Mutagen Stocks Known lesion CG5618f05961 piggyBac transposase 2 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG5618 Class Mutagen Stocks Known lesion CG5618JF02627 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG5618GD11708 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes CG5618NIG.5618R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel6136 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD11708} NA P{NIG.5618R} NA P{TRiP.JF02627} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{WH}CG5618f05961 NA
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 6 terms )
Molecular Function
CV term Evidence References
dipeptidyl-peptidase activity inferred from electronic annotation with InterPro:IPR005317 (FlyBase Curators et al., 2004-) pyridoxal phosphate binding inferred from electronic annotation with InterPro:IPR002129, InterPro:IPR015421, InterPro:IPR015422 (FlyBase Curators et al., 2004-) sulfinoalanine decarboxylase activity inferred from sequence or structural similarity with EMBL:X94152 (FlyBase, 1992-)
Biological Process
CV term Evidence References
carboxylic acid metabolic process inferred from electronic annotation with InterPro:IPR002129 (FlyBase Curators et al., 2004-) proteolysis inferred from electronic annotation with InterPro:IPR005317 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
cytoplasm inferred from electronic annotation with InterPro:IPR005317 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG5618 - 128up anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG5618 - Arp2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG5618 - Arpc1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG5618 - Arpc2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG5618 - Arpc3A anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG5618 - Arpc4 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG5618 - Arpc5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG5618 - CG6937 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG5618 - Hsp23 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG5618 - Rbp1-like anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG5618 - Saf-B anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG5618 - cpb anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG5618 - eIF6 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG5618 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 65502 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0036975 DroID - A comprehensive database of gene and protein interactions. • FBgn0036975 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40241
Orthologs
OrthoDB Orthologs (62) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6GF40T Dipteran inclusive ortholog search EOG6NS3M1 Insect inclusive ortholog search EOG6G1KBW Arthropod inclusive ortholog search EOG6QFTVQ Metazoa inclusive ortholog search EOG6QCCZV
Orthologs in Drosophila Species (EOG6GF40T)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG5618     Drosophila simulans   Dsim\GD14877 Y   Drosophila sechellia   Dsec\GM22279 Y   Drosophila erecta   Dere\GG16103 Y   Drosophila yakuba   Dyak\GE19668 Y   Drosophila yakuba   Dyak\GE23006     Drosophila ananassae   Dana\GF10330 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA19009 Y   Drosophila persimilis   Dper\GL25133 Y   Drosophila willistoni   Dwil\GK16953 Y   Drosophila virilis   Dvir\GJ13795 Y   Drosophila mojavensis   Dmoj\GI11920 Y   Drosophila grimshawi   Dgri\GH16827 Y
Orthologs in non-Drosophila Dipterans (EOG6NS3M1)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL010951   Anopheles gambiae Malaria mosquito  Agam\AGAP002425   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ001385
Orthologs in non-Dipteran Insects (EOG6G1KBW)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\Gad1   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG013618   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH13707   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH13706   Atta cephalotes Leafcutter ant  Acep\ACEP23106   Camponotus floridanus Florida carpenter ant  Cflo\CFLO14299   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL21197   Linepithema humile Argentine ant  Lhum\LH17751   Pogonomyrmex barbatus Red harvester ant  Pbar\PB26181   Solenopsis invicta Red fire ant  Sinv\SINV22220   Bombyx mori Silkmoth  Bmor\BGIBMGA010122   Pediculus humanus Human body louse  Phum\PHUM361020   Tribolium castaneum Red flour beetle  Tcas\TC014177
Orthologs in non-Insect Arthropods (EOG6QFTVQ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\Apod   Daphnia pulex Water flea  Dpux\JGI_V11_301204
Orthologs in non-Arthropod Metazoa (EOG6QCCZV)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\unc-25 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_009056gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_002857gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_027946gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_027078gn Y Danio rerio Zebrafish  Drer\gad1b Y Danio rerio Zebrafish  Drer\gad1a Y Danio rerio Zebrafish  Drer\csad Y Danio rerio Zebrafish  Drer\DKEY-151M6.5 Y Danio rerio Zebrafish  Drer\gad2 Y Xenopus tropicalis Western clawed frog  Xtro\gad2 Y Xenopus tropicalis Western clawed frog  Xtro\gad1.1 Y Xenopus tropicalis Western clawed frog  Xtro\csad Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000005863 Y Xenopus tropicalis Western clawed frog  Xtro\gadl1 Y Gallus gallus Domestic chicken  Ggal\GAD2 Y Gallus gallus Domestic chicken  Ggal\GADL1 Y Gallus gallus Domestic chicken  Ggal\GAD67 Y Mus musculus House mouse  Mmus\Gad2 Y Mus musculus House mouse  Mmus\Gad1 Y Mus musculus House mouse  Mmus\Csad Y Mus musculus House mouse  Mmus\Gadl1 Y Mus musculus House mouse  Mmus\Gad1-ps Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000013221 Y Rattus norvegicus Norway rat  Rnor\Csad Y Rattus norvegicus Norway rat  Rnor\Gad2 Y Rattus norvegicus Norway rat  Rnor\Gad1 Y Homo sapiens Human  Hsap\ENSG00000139631 Y Homo sapiens Human  Hsap\GAD1 Y Homo sapiens Human  Hsap\GAD2 Y Homo sapiens Human  Hsap\GADL1 Y
Human Orthologs (4)
Gene OMIM HGNC Hsap\ENSG00000139631     Hsap\GAD1     Hsap\GAD2     Hsap\GADL1
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD14877 Drosophila sechellia Dsec\GM22279 Drosophila erecta Dere\GG16103 Drosophila yakuba Dyak\GE19668 Drosophila ananassae Dana\GF10330 Drosophila pseudoobscura pseudoobscura Dpse\GA19009 Drosophila persimilis Dper\GL25133 Drosophila willistoni Dwil\GK16953 Drosophila virilis Dvir\GJ13795 Drosophila mojavensis Dmoj\GI11920 Drosophila grimshawi Dgri\GH16827
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	18924 w1118; PBac{WH}CG5618f05961 27318 y1 v1; P{TRiP.JF02627}attP2
Harvard	- PBac{WH}CG5618f05961
Genomic Clones ( 1 )
	BACR16G09 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 20 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LP10840 LP10922
Other clones	DPiM_LP10922
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	HL05807 LP07953 RH19054 RH19209 RH44158 RH56648 RH72377
Other clones	149737 214255.50 527822 EC22227 EK255552 EN08018 EP12660 ESG0118d.B21_E12 RP004236549 SD07538
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0036975 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40241
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_140954 NM_206402 NM_001275177 RefSeq (Proteins) • NP_649211 NP_996124 NP_001262106 DDBJ / EMBL / GenBank • AAF51576 AAL29108 AAN71271 AAS65077 ACL83342 AGB94799 AI296768 AI296828 AW944138 AY061560 BT001516 CZ488588 Entrez Gene - A searchable database of RefSeq genes. • 40241 UniProtKB/TrEMBL • B7Z089 Q8IGZ7 Q9VPH6
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Pyridoxal phosphate-dependent decarboxylase (IPR002129) Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421) Pyridoxal phosphate-dependent transferase (IPR015424) Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (IPR015422) Dipeptidyl-peptidase 3 (IPR005317) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LP10922
Linkouts
	BioGRID - A database of protein and genetic interactions • 65502 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0036975 DroID - A comprehensive database of gene and protein interactions. • FBgn0036975 DRSC - Results from RNAi screens. • FBgn0036975 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0036975 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5618-RA;CG7415-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0036975 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40241 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40241 modMine - Data generated by the modENCODE project. • FBgn0036975
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG5618 (Fujikawa et al., 2009, Perkins et al., 2009.8.10, Ellis and Carney, 2010, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
References ( 20 )
Research paper	Ellis and Carney, 2010, BMC Genomics 11: 558 Mating alters gene expression patterns in Drosophila melanogaster male heads. [FBrf0212156] Fujikawa et al., 2009, Gene 446(1): 11--17 Characteristics of genes up-regulated and down-regulated after 24 h starvation in the head of Drosophila. [FBrf0208557] Ueda et al., 2002, J. Biol. Chem. 277(16): 14048--14052 Genome-wide transcriptional orchestration of circadian rhythms in Drosophila. [FBrf0149598]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Perkins et al., 2009.8.10, Update to TRiP stock collection. Update to TRiP stock collection. [FBrf0208863] Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file) Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]
Curated genome annotation	Ashburner, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126651] FamiliarityBreedsContempt, 1999.11, [Automatic annotations performed at the Celera Jamboreee.] [Automatic annotations performed at the Celera Jamboreee.] [FBrf0126705] Gong, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126669]