Gene Dmel\Cpr78Ca

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General Information

Symbol

Dmel\Cpr78Ca

Species

D. melanogaster

Name

Cuticular protein 78Ca

Annotation symbol

CG11310

Feature type

protein_coding_gene

FlyBase ID

FBgn0037067

Gene Model Status

Current

Stock availability

1 publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

78C6-78C6

Sequence location

3L:21,284,960..21,285,900 [-]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

The gene Cuticular protein 78Ca is referred to in FlyBase by the symbol Dmel\Cpr78Ca (CG11310, FBgn0037067). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: structural constituent of chitin-based cuticle. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Insect cuticle protein. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of no expression detected. Peak expression observed at stages throughout the larval period. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval trachea, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1635806_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Cpr78Ca. Gene sequence location is 3L:21284960..21285900.

User Contributed Data

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Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

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Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

78C6-78C6

Limits computationally determined from genome sequence between P{lacW}l(3)j1B10^j1B10 and P{lacW}l(3)j2C4^j2C4

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\Cpr78Ca for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.43

Gene model reviewed during 5.45

Low-frequency RNA-seq exon junction(s) not annotated.

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

Cpr78Ca-RA

FBtr0078409

NM_141041

876

127

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

Cpr78Ca-PA

FBpp0078063

14.3

127

7.72

NP_649298

AAF51700

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Insect cuticle protein (IPR000618)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q9VP56

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval trachea, larval carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		7.975
Larval Midgut		8.6
Larval Hindgut		10.2
Larval Malpighian Tubules		5.4
Larval Fat Body		2.8
Larval Salivary Gland		29
Larval Trachea		103.175
Larval Carcass		377.125
Adult Head		5
Adult Eye		3.825
Adult Brain		9.6
Adult Thoracic-Abdominal Ganglion		9.3
Adult Crop		4.1
Adult Midgut		5.1
Adult Hindgut		13.1
Adult Malpighian Tubules		4
Adult Fat Body		6.9
Adult Salivary Gland		22.2
Adult Heart		1.425
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		12.8
Adult Ovary		1.5
Adult Testis		1
Adult Male Accessory Gland		5.9
Adult Carcass		11.5
Expression Level Scale		None Low Moderate

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		7.975
Larval Midgut		8.6
Larval Hindgut		10.2
Larval Malpighian Tubules		5.4
Larval Fat Body		2.8
Larval Salivary Gland		29
Larval Trachea		103.175
Larval Carcass		377.125
Adult Head		5
Adult Eye		3.825
Adult Brain		9.6
Adult Thoracic-Abdominal Ganglion		9.3
Adult Crop		4.1
Adult Midgut		5.1
Adult Hindgut		13.1
Adult Malpighian Tubules		4
Adult Fat Body		6.9
Adult Salivary Gland		22.2
Adult Heart		1.425
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		12.8
Adult Ovary		1.5
Adult Testis		1
Adult Male Accessory Gland		5.9
Adult Carcass		11.5
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		7.975
Larval Midgut		8.6
Larval Hindgut		10.2
Larval Malpighian Tubules		5.4
Larval Fat Body		2.8
Larval Salivary Gland		29
Larval Trachea		103.175
Larval Carcass		377.125
Adult Head		5
Adult Eye		3.825
Adult Brain		9.6
Adult Thoracic-Abdominal Ganglion		9.3
Adult Crop		4.1
Adult Midgut		5.1
Adult Hindgut		13.1
Adult Malpighian Tubules		4
Adult Fat Body		6.9
Adult Salivary Gland		22.2
Adult Heart		1.425
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		12.8
Adult Ovary		1.5
Adult Testis		1
Adult Male Accessory Gland		5.9
Adult Carcass		11.5
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		7.975
Larval Midgut		8.6
Larval Hindgut		10.2
Larval Malpighian Tubules		5.4
Larval Fat Body		2.8
Larval Salivary Gland		29
Larval Trachea		103.175
Larval Carcass		377.125
Adult Head		5
Adult Eye		3.825
Adult Brain		9.6
Adult Thoracic-Abdominal Ganglion		9.3
Adult Crop		4.1
Adult Midgut		5.1
Adult Hindgut		13.1
Adult Malpighian Tubules		4
Adult Fat Body		6.9
Adult Salivary Gland		22.2
Adult Heart		1.425
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		12.8
Adult Ovary		1.5
Adult Testis		1
Adult Male Accessory Gland		5.9
Adult Carcass		11.5
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		7.975
Larval Midgut		8.6
Larval Hindgut		10.2
Larval Malpighian Tubules		5.4
Larval Fat Body		2.8
Larval Salivary Gland		29
Larval Trachea		103.175
Larval Carcass		377.125
Adult Head		5
Adult Eye		3.825
Adult Brain		9.6
Adult Thoracic-Abdominal Ganglion		9.3
Adult Crop		4.1
Adult Midgut		5.1
Adult Hindgut		13.1
Adult Malpighian Tubules		4
Adult Fat Body		6.9
Adult Salivary Gland		22.2
Adult Heart		1.425
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		12.8
Adult Ovary		1.5
Adult Testis		1
Adult Male Accessory Gland		5.9
Adult Carcass		11.5
Expression Level Scale		None Low Moderate High

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		7.975
Larval Midgut		8.6
Larval Hindgut		10.2
Larval Malpighian Tubules		5.4
Larval Fat Body		2.8
Larval Salivary Gland		29
Larval Trachea		103.175
Larval Carcass		377.125
Adult Head		5
Adult Eye		3.825
Adult Brain		9.6
Adult Thoracic-Abdominal Ganglion		9.3
Adult Crop		4.1
Adult Midgut		5.1
Adult Hindgut		13.1
Adult Malpighian Tubules		4
Adult Fat Body		6.9
Adult Salivary Gland		22.2
Adult Heart		1.425
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		12.8
Adult Ovary		1.5
Adult Testis		1
Adult Male Accessory Gland		5.9
Adult Carcass		11.5
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		7.975
Larval Midgut		8.6
Larval Hindgut		10.2
Larval Malpighian Tubules		5.4
Larval Fat Body		2.8
Larval Salivary Gland		29
Larval Trachea		103.175
Larval Carcass		377.125
Adult Head		5
Adult Eye		3.825
Adult Brain		9.6
Adult Thoracic-Abdominal Ganglion		9.3
Adult Crop		4.1
Adult Midgut		5.1
Adult Hindgut		13.1
Adult Malpighian Tubules		4
Adult Fat Body		6.9
Adult Salivary Gland		22.2
Adult Heart		1.425
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		12.8
Adult Ovary		1.5
Adult Testis		1
Adult Male Accessory Gland		5.9
Adult Carcass		11.5
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		7.975
Larval Midgut		8.6
Larval Hindgut		10.2
Larval Malpighian Tubules		5.4
Larval Fat Body		2.8
Larval Salivary Gland		29
Larval Trachea		103.175
Larval Carcass		377.125
Adult Head		5
Adult Eye		3.825
Adult Brain		9.6
Adult Thoracic-Abdominal Ganglion		9.3
Adult Crop		4.1
Adult Midgut		5.1
Adult Hindgut		13.1
Adult Malpighian Tubules		4
Adult Fat Body		6.9
Adult Salivary Gland		22.2
Adult Heart		1.425
Adult VirginFemale Spermatheca		11.4
Adult InseminatedFemale Spermatheca		12.8
Adult Ovary		1.5
Adult Testis		1
Adult Male Accessory Gland		5.9
Adult Carcass		11.5
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	5
NA	Eye	3.825
NA	Brain	9.6
7.975	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	9.3
NA	Crop	4.1
8.6	Midgut	5.1
no informative data	Hindgut	no informative data
5.4	Malpighian Tubules	4
2.8	Fat Body	6.9
no informative data	Salivary Gland	no informative data
NA	Heart	1.425
103.175	Trachea	NA
NA	VirginFemale Spermatheca	no informative data
NA	InseminatedFemale Spermatheca	no informative data
NA	Ovary	1.5
NA	Testis	1
NA	Male Accessory Gland	5.9
377.125	Carcass	no informative data

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		1
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		12
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		1
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		12
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		1
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		12
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		1
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		12
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		1
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		12
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		1
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		12
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		1
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		12
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		1
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		1
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		1
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		12
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of no expression detected. Peak expression observed at stages throughout the larval period.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		1
embryo 18-20hr		3
embryo 20-22hr		1
embryo 22-24hr		1
larva L1		1
larva L2		0
larva L3 12hr old		16
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		7
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		1
embryo 18-20hr		3
embryo 20-22hr		1
embryo 22-24hr		1
larva L1		1
larva L2		0
larva L3 12hr old		16
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		7
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		1
embryo 18-20hr		3
embryo 20-22hr		1
embryo 22-24hr		1
larva L1		1
larva L2		0
larva L3 12hr old		16
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		7
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		1
embryo 18-20hr		3
embryo 20-22hr		1
embryo 22-24hr		1
larva L1		1
larva L2		0
larva L3 12hr old		16
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		7
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		1
embryo 18-20hr		3
embryo 20-22hr		1
embryo 22-24hr		1
larva L1		1
larva L2		0
larva L3 12hr old		16
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		7
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		1
embryo 18-20hr		3
embryo 20-22hr		1
embryo 22-24hr		1
larva L1		1
larva L2		0
larva L3 12hr old		16
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		7
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		1
embryo 18-20hr		3
embryo 20-22hr		1
embryo 22-24hr		1
larva L1		1
larva L2		0
larva L3 12hr old		16
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		7
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		1
embryo 18-20hr		3
embryo 20-22hr		1
embryo 22-24hr		1
larva L1		1
larva L2		0
larva L3 12hr old		16
larva L3 puffstage 1-2		15
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		11
white prepupae new		7
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		1
pupae 4d postWPP		1
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		0
cold shock, 4-day adult		0
heat shock, 4-day adult		12
Cadmium 50 mM 6 hrs, larvae L3		19
Cadmium 50 mM 12 hrs, larvae L3		17
Cadmium 50 mM 48 hrs, 4-day adult		14
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		0
Ethanol 2.5% 3 hrs, larvae L3		0
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		16
Caffeine 1.5 mg/ml 4 hrs, larvae L3		10
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		0
Caffeine 25 mg/ml 48 hrs, 4-day adult		2
Paraquat 5 mM 48 hrs, 4-day adult		0
Paraquat 10 mM 48 hrs, 4-day adult		0
Rotenone 2 μg 12 hrs, larvae L3		19
Rotenone 8 μg 12 hrs, larvae L3		14
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		0
cold shock, 4-day adult		0
heat shock, 4-day adult		12
Cadmium 50 mM 6 hrs, larvae L3		19
Cadmium 50 mM 12 hrs, larvae L3		17
Cadmium 50 mM 48 hrs, 4-day adult		14
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		0
Ethanol 2.5% 3 hrs, larvae L3		0
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		16
Caffeine 1.5 mg/ml 4 hrs, larvae L3		10
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		0
Caffeine 25 mg/ml 48 hrs, 4-day adult		2
Paraquat 5 mM 48 hrs, 4-day adult		0
Paraquat 10 mM 48 hrs, 4-day adult		0
Rotenone 2 μg 12 hrs, larvae L3		19
Rotenone 8 μg 12 hrs, larvae L3		14
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		0
cold shock, 4-day adult		0
heat shock, 4-day adult		12
Cadmium 50 mM 6 hrs, larvae L3		19
Cadmium 50 mM 12 hrs, larvae L3		17
Cadmium 50 mM 48 hrs, 4-day adult		14
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		0
Ethanol 2.5% 3 hrs, larvae L3		0
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		16
Caffeine 1.5 mg/ml 4 hrs, larvae L3		10
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		0
Caffeine 25 mg/ml 48 hrs, 4-day adult		2
Paraquat 5 mM 48 hrs, 4-day adult		0
Paraquat 10 mM 48 hrs, 4-day adult		0
Rotenone 2 μg 12 hrs, larvae L3		19
Rotenone 8 μg 12 hrs, larvae L3		14
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		0
cold shock, 4-day adult		0
heat shock, 4-day adult		12
Cadmium 50 mM 6 hrs, larvae L3		19
Cadmium 50 mM 12 hrs, larvae L3		17
Cadmium 50 mM 48 hrs, 4-day adult		14
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		0
Ethanol 2.5% 3 hrs, larvae L3		0
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		16
Caffeine 1.5 mg/ml 4 hrs, larvae L3		10
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		0
Caffeine 25 mg/ml 48 hrs, 4-day adult		2
Paraquat 5 mM 48 hrs, 4-day adult		0
Paraquat 10 mM 48 hrs, 4-day adult		0
Rotenone 2 μg 12 hrs, larvae L3		19
Rotenone 8 μg 12 hrs, larvae L3		14
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		0
cold shock, 4-day adult		0
heat shock, 4-day adult		12
Cadmium 50 mM 6 hrs, larvae L3		19
Cadmium 50 mM 12 hrs, larvae L3		17
Cadmium 50 mM 48 hrs, 4-day adult		14
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		0
Ethanol 2.5% 3 hrs, larvae L3		0
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		16
Caffeine 1.5 mg/ml 4 hrs, larvae L3		10
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		0
Caffeine 25 mg/ml 48 hrs, 4-day adult		2
Paraquat 5 mM 48 hrs, 4-day adult		0
Paraquat 10 mM 48 hrs, 4-day adult		0
Rotenone 2 μg 12 hrs, larvae L3		19
Rotenone 8 μg 12 hrs, larvae L3		14
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		0
cold shock, 4-day adult		0
heat shock, 4-day adult		12
Cadmium 50 mM 6 hrs, larvae L3		19
Cadmium 50 mM 12 hrs, larvae L3		17
Cadmium 50 mM 48 hrs, 4-day adult		14
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		0
Ethanol 2.5% 3 hrs, larvae L3		0
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		16
Caffeine 1.5 mg/ml 4 hrs, larvae L3		10
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		0
Caffeine 25 mg/ml 48 hrs, 4-day adult		2
Paraquat 5 mM 48 hrs, 4-day adult		0
Paraquat 10 mM 48 hrs, 4-day adult		0
Rotenone 2 μg 12 hrs, larvae L3		19
Rotenone 8 μg 12 hrs, larvae L3		14
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		0
cold shock, 4-day adult		0
heat shock, 4-day adult		12
Cadmium 50 mM 6 hrs, larvae L3		19
Cadmium 50 mM 12 hrs, larvae L3		17
Cadmium 50 mM 48 hrs, 4-day adult		14
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		0
Ethanol 2.5% 3 hrs, larvae L3		0
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		16
Caffeine 1.5 mg/ml 4 hrs, larvae L3		10
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		0
Caffeine 25 mg/ml 48 hrs, 4-day adult		2
Paraquat 5 mM 48 hrs, 4-day adult		0
Paraquat 10 mM 48 hrs, 4-day adult		0
Rotenone 2 μg 12 hrs, larvae L3		19
Rotenone 8 μg 12 hrs, larvae L3		14
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		0
cold shock, 4-day adult		0
heat shock, 4-day adult		12
Cadmium 50 mM 6 hrs, larvae L3		19
Cadmium 50 mM 12 hrs, larvae L3		17
Cadmium 50 mM 48 hrs, 4-day adult		14
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		9
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		0
Ethanol 2.5% 3 hrs, larvae L3		0
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		16
Caffeine 1.5 mg/ml 4 hrs, larvae L3		10
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		0
Caffeine 25 mg/ml 48 hrs, 4-day adult		2
Paraquat 5 mM 48 hrs, 4-day adult		0
Paraquat 10 mM 48 hrs, 4-day adult		0
Rotenone 2 μg 12 hrs, larvae L3		19
Rotenone 8 μg 12 hrs, larvae L3		14
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0037067

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG11310-RA

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

viable, with Scer\GAL4^pnr-MD237

Cpr78Ca^GD5544

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of Cpr78Ca	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 3 )

For All Alleles Carried on Transgenic Constructs Show

Allele of Cpr78Ca	Mutagen	Stocks	Known lesion
Cpr78Ca^GD5544	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
Cpr78Ca^KK109593	in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes
Cpr78Ca^NIG.11310R	in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD5544}

P{KK109593}

P{NIG.11310R}

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 1 unique term )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 1 term )

Molecular Function

CV term

Evidence

References

structural constituent of chitin-based cuticle

inferred from sequence or structural similarity with InterPro:IPR000618

(Willis, 2007.1.3)

inferred from sequence or structural similarity with Pfam:PF00379

(Willis, 2007.1.3)

Biological Process ( 0 terms)

Cellular Component ( 0 terms)

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

Cpr78Ca allele

Gene

References

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0037067

Orthologs

OrthoDB Orthologs (13) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG6R50PH

Dipteran inclusive ortholog search

No orthologs identified

Insect inclusive ortholog search

No orthologs identified

Arthropod inclusive ortholog search

No orthologs identified

Metazoa inclusive ortholog search

No orthologs identified

Orthologs in Drosophila Species (EOG6R50PH)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA23360

Drosophila persimilis

Dper\GL24591

Drosophila willistoni

Dwil\GK20427

Drosophila virilis

Dvir\GJ11428

Drosophila mojavensis

Dmoj\GI12196

Drosophila grimshawi

Dgri\GH16515

Orthologs in non-Drosophila Dipterans (None identified)

No non-Drosophilid orthologies identified

Orthologs in non-Dipteran Insects (None identified)

No non-Dipteran orthologies identified

Orthologs in non-Insect Arthropods (None identified)

No non-Insect Arthropod orthologies identified

Orthologs in non-Arthropod Metazoa (None identified)

No non-Arthropod Metazoa orthologies identified

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (11) based on analysis using Dmel annotation version 4.3

Organism

Gene

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA23360

Drosophila persimilis

Dper\GL24591

Drosophila willistoni

Dwil\GK20427

Drosophila virilis

Dvir\GJ11428

Drosophila mojavensis

Dmoj\GI12196

Drosophila grimshawi

Dgri\GH16515

Stocks & Reagents

Stocks Listed in FlyBase ( 1 )

VDRC

v31054

w¹¹¹⁸; P{GD5544}v31054

Genomic Clones ( 1 )

BACR02C22

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 1 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

RT03410

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0037067

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

40352

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for identity of: Cpr78Ca CG11310

(Willis, 2007.1.3)

Source for database merge of

Additional comments

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_141041

RefSeq (Proteins)

•

NP_649298

DDBJ / EMBL / GenBank

•

AAF51700

Entrez Gene - A searchable database of RefSeq genes.

•

40352

UniProtKB/TrEMBL

•

Q9VP56

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Insect cuticle protein (IPR000618)

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0037067

DRSC - Results from RNAi screens.

•

FBgn0037067

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0037067

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG11310-RA

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0037067

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

40352

modMine - Data generated by the modENCODE project.

•

FBgn0037067

Synonyms & Secondary IDs ( 4 )

Reported As

Symbol Synonym

CG11310

(Blanco et al., 2008, Keleman et al., 2009.8.5)

Cpr78Ca

(Willis, 2007.1.3, Karouzou et al., 2007, Karouzou et al., 2007, Cherbas et al., 2011, Japanese National Institute of Genetics, 2012.5.21)

DmelCpr78Ca

(Karouzou et al., 2007)

Name Synonym

CG11310

Cuticular protein 78Ca

Secondary FlyBase IDs

References ( 14 )

Research paper

Cherbas et al., 2011, Genome Res. 21(2): 301--314: The transcriptional diversity of 25 Drosophila cell lines. [FBrf0213077]
Blanco et al., 2008, Genome Biol. 9(9): R134: Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila. [FBrf0207036]

Supplementary material

Mummery-Widmer et al., 2009, Nature 458(7241):: Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Karouzou et al., 2007, Insect Biochem. Mol. Biol. 37(8):: Table S1. [FBrf0200185]
Karouzou et al., 2007, Insect Biochem. Mol. Biol. 37(8):: Tables S2-S5. [FBrf0200186]

Review

Karouzou et al., 2007, Insect Biochem. Mol. Biol. 37(8): 754--760: Drosophila cuticular proteins with the R&R Consensus: annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences. [FBrf0200175]

Personal communication to FlyBase

Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Willis, 2007.1.3, Drosophila genes that have the R&R consensus.: Drosophila genes that have the R&R consensus. [FBrf0199281]
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.: Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]

FlyBase analysis

FlyBase, 1992-, FlyBase curation.: FlyBase curation. [FBrf0105495]

Stock list

Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY.: RNAi stocks available from NIG-FLY. [FBrf0218457]

Curated genome annotation

FamiliarityBreedsContempt, 1999.11, [Automatic annotations performed at the Celera Jamboreee.]: [Automatic annotations performed at the Celera Jamboreee.] [FBrf0126705]
Zhong, 1999.11, [Annotations performed at the Celera Jamboreee.]: [Annotations performed at the Celera Jamboreee.] [FBrf0126703]