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Gene Dmel\M6

General Information
Symbol	Dmel\M6	Species	D. melanogaster
Name	M6	Annotation symbol	CG7540
Feature type	protein_coding_gene	FlyBase ID	FBgn0037092
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	78D4-78D4	Sequence location	3L:21,500,952..21,505,849 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene M6 is referred to in FlyBase by the symbol Dmel\M6 (CG7540, FBgn0037092). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: oogenesis. 15 alleles are reported. The phenotype of these alleles is annotated with: egg. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Myelin proteolipid protein PLP. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 06-18 hour embryonic stages, during late pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, larval/adult salivary gland, larval trachea, adult male accessory gland, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1632967_s_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of M6. Gene sequence location is 3L:21500952..21505849.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01	Sequence features BKN29436 HFA11869 Controlled Vocabulary Terms oogenesis
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 78D4-78D4   Limits computationally determined from genome sequence between P{lacW}l(3)j1B10j1B10 and P{lacW}l(3)j2C4j2C4
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\M6 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) M6-RA FBtr0078355  NM_141066   2164   314 M6-RB FBtr0078356  NM_168911   1945   314
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein M6-PA   FBpp0078011   36.0   314   7.08     NP_649323   AAF51736 M6-PB   FBpp0078012   36.0   314   7.08     NP_730642   AAN12170
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Myelin proteolipid protein PLP (IPR001614)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA141336   AA141337   AA141701   AA696516   AA816816   AE014296 AAF51736   AE014296 AAN12170   AF253528 AAF71284   AF253528 AAF71285   AW942256   AZ877634   AZ877635   BG637541   BI164945   BI168309   BI170227   BI171627   BI214028   BI214386   BI216213   BI229216   BI230676   BI238255   BI239380   BI239993   BI241328   BI356293   BI357477   BI362570   BI364418   BI370864   BI370865   BI373238   BI374123   BI374902   BI374942   BI486988   BT010069 AAQ22538   CL527968   CO180540   CO196498   CO196502   CO262625   CO263689   CO275833   CO277592   CO279097   CO286259   CO288988   CO293559   CO295087   CO296330   CO299673   CO301714   CO304487   CO308003   CO313957   CO318683   CO324691   CO340203   CO340902   CO343834   EC068837   EC070203   EC078329   EC083227   EC085725   EC087882   EC091065   EC091119   EC194379   EC201624   EC202811   EC204024   EC211068   EC213430   EC213673   EC219305   EC221569   EC226019   EC226540   EC228690   EC228903   EC229717   EC230434   EC231315   EC247165   EC252045   EC253413   GH751694   GH752235   GH752578   GH753002   GH754223   GH755336   GH756097   GH770625   GH772507   GH772571   GH774125   GH776122   GH776854   GH777902   GH778126   GH780593   GH780642   GH782268   GH782647   GH785075   GH785407   GH785493   GH787412   GH789021   GH792897   GH794226   GH796073   GH797712   GH798849   GH801364   GH803965   GH804126   GH804746   GH804919   GH810022   GH810062   GH811253   GH816151   GH817431   GH819987   GH824534   GH826315   GH827944   GH834390   GH835498   GH837120   GH840132   GH841763   GH841769   GH842571   GH843455   GH846895   GH862213   GH863312   GH865143   GH867547   GH870972   GH871797   GH872125   GH873051   GH873231   GH887558   GH892590   GH893659   GH896160   GH899182   GH899938   GH906326   GH906614   GH910156   GH911365   GH912823   GH915346   GH915926   GH918421   GH918589   GH920126   GH929879   GH932063   GH932211   GH935062   GH938854   GH939259   GH939872   GH940282   GH940784
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9NGC6 Q9VP23
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0037092    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0037092 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 06-18 hour embryonic stages, during late pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0037092 expression level Developmental Stage   Expression Level embryo 00-02hr    279 embryo 02-04hr    549 embryo 04-06hr    776 embryo 06-08hr    2243 embryo 08-10hr    3918 embryo 10-12hr    6532 embryo 12-14hr    6599 embryo 14-16hr    4274 embryo 16-18hr    3599 embryo 18-20hr    2453 embryo 20-22hr    1916 embryo 22-24hr    2549 larva L1    1338 larva L2    1157 larva L3 12hr old    708 larva L3 puffstage 1-2    984 larva L3 puffstage 3-6    1658 larva L3 puffstage 7-9    3828 white prepupae new    3732 white prepupae 12hr    3195 white prepupae 24hr    3930 pupae 2d postWPP    4105 pupae 3d postWPP    2851 pupae 4d postWPP    1277 adult male 01day    894 adult male 05day    607 adult male 30day    551 adult female 01day    617 adult female 05day    457 adult female 30day    475 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (279) embryo 02-04hr  (549) embryo 04-06hr  (776) embryo 06-08hr  (2243) embryo 08-10hr  (3918) embryo 10-12hr  (6532) embryo 12-14hr  (6599) embryo 14-16hr  (4274) embryo 16-18hr  (3599) embryo 18-20hr  (2453) embryo 20-22hr  (1916) embryo 22-24hr  (2549) larva L1  (1338) larva L2  (1157) larva L3 12hr old  (708) larva L3 puffstage 1-2  (984) larva L3 puffstage 3-6  (1658) larva L3 puffstage 7-9  (3828) white prepupae new  (3732) white prepupae 12hr  (3195) white prepupae 24hr  (3930) pupae 2d postWPP  (4105) pupae 3d postWPP  (2851) pupae 4d postWPP  (1277) adult male 01day  (894) adult male 05day  (607) adult male 30day  (551) adult female 01day  (617) adult female 05day  (457) adult female 30day  (475) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    279 embryo 02-04hr    549 embryo 04-06hr    776 embryo 06-08hr  (2243) embryo 08-10hr  (3918) embryo 10-12hr  (6532) embryo 12-14hr  (6599) embryo 14-16hr  (4274) embryo 16-18hr  (3599) embryo 18-20hr  (2453) embryo 20-22hr  (1916) embryo 22-24hr  (2549) larva L1    1338 larva L2    1157 larva L3 12hr old    708 larva L3 puffstage 1-2    984 larva L3 puffstage 3-6  (1658) larva L3 puffstage 7-9  (3828) white prepupae new  (3732) white prepupae 12hr  (3195) white prepupae 24hr  (3930) pupae 2d postWPP  (4105) pupae 3d postWPP  (2851) pupae 4d postWPP    1277 adult male 01day    894 adult male 05day    607 adult male 30day    551 adult female 01day    617 adult female 05day    457 adult female 30day    475 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    279 embryo 02-04hr    549 embryo 04-06hr    776 embryo 06-08hr    2243 embryo 08-10hr    3918 embryo 10-12hr    6532 embryo 12-14hr    6599 embryo 14-16hr    4274 embryo 16-18hr    3599 embryo 18-20hr    2453 embryo 20-22hr    1916 embryo 22-24hr    2549 larva L1    1338 larva L2    1157 larva L3 12hr old    708 larva L3 puffstage 1-2    984 larva L3 puffstage 3-6    1658 larva L3 puffstage 7-9    3828 white prepupae new    3732 white prepupae 12hr    3195 white prepupae 24hr    3930 pupae 2d postWPP    4105 pupae 3d postWPP    2851 pupae 4d postWPP    1277 adult male 01day    894 adult male 05day    607 adult male 30day    551 adult female 01day    617 adult female 05day    457 adult female 30day    475 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    279 embryo 02-04hr    549 embryo 04-06hr    776 embryo 06-08hr    2243 embryo 08-10hr    3918 embryo 10-12hr    6532 embryo 12-14hr    6599 embryo 14-16hr    4274 embryo 16-18hr    3599 embryo 18-20hr    2453 embryo 20-22hr    1916 embryo 22-24hr    2549 larva L1    1338 larva L2    1157 larva L3 12hr old    708 larva L3 puffstage 1-2    984 larva L3 puffstage 3-6    1658 larva L3 puffstage 7-9    3828 white prepupae new    3732 white prepupae 12hr    3195 white prepupae 24hr    3930 pupae 2d postWPP    4105 pupae 3d postWPP    2851 pupae 4d postWPP    1277 adult male 01day    894 adult male 05day    607 adult male 30day    551 adult female 01day    617 adult female 05day    457 adult female 30day    475 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0037092 expression level Developmental Stage   Expression Level embryo 00-02hr    279 embryo 02-04hr    549 embryo 04-06hr    776 embryo 06-08hr    2243 embryo 08-10hr    3918 embryo 10-12hr    6532 embryo 12-14hr    6599 embryo 14-16hr    4274 embryo 16-18hr    3599 embryo 18-20hr    2453 embryo 20-22hr    1916 embryo 22-24hr    2549 larva L1    1338 larva L2    1157 larva L3 12hr old    708 larva L3 puffstage 1-2    984 larva L3 puffstage 3-6    1658 larva L3 puffstage 7-9    3828 white prepupae new    3732 white prepupae 12hr    3195 white prepupae 24hr    3930 pupae 2d postWPP    4105 pupae 3d postWPP    2851 pupae 4d postWPP    1277 adult male 01day    894 adult male 05day    607 adult male 30day    551 adult female 01day    617 adult female 05day    457 adult female 30day    475 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (279) embryo 02-04hr  (549) embryo 04-06hr  (776) embryo 06-08hr  (2243) embryo 08-10hr  (3918) embryo 10-12hr  (6532) embryo 12-14hr  (6599) embryo 14-16hr  (4274) embryo 16-18hr  (3599) embryo 18-20hr  (2453) embryo 20-22hr  (1916) embryo 22-24hr  (2549) larva L1  (1338) larva L2  (1157) larva L3 12hr old  (708) larva L3 puffstage 1-2  (984) larva L3 puffstage 3-6  (1658) larva L3 puffstage 7-9  (3828) white prepupae new  (3732) white prepupae 12hr  (3195) white prepupae 24hr  (3930) pupae 2d postWPP  (4105) pupae 3d postWPP  (2851) pupae 4d postWPP  (1277) adult male 01day  (894) adult male 05day  (607) adult male 30day  (551) adult female 01day  (617) adult female 05day  (457) adult female 30day  (475) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    279 embryo 02-04hr    549 embryo 04-06hr    776 embryo 06-08hr  2243 embryo 08-10hr  (3918) embryo 10-12hr  (6532) embryo 12-14hr  (6599) embryo 14-16hr  (4274) embryo 16-18hr  (3599) embryo 18-20hr  2453 embryo 20-22hr  1916 embryo 22-24hr  (2549) larva L1    1338 larva L2    1157 larva L3 12hr old    708 larva L3 puffstage 1-2    984 larva L3 puffstage 3-6  1658 larva L3 puffstage 7-9  (3828) white prepupae new  (3732) white prepupae 12hr  (3195) white prepupae 24hr  (3930) pupae 2d postWPP  (4105) pupae 3d postWPP  (2851) pupae 4d postWPP    1277 adult male 01day    894 adult male 05day    607 adult male 30day    551 adult female 01day    617 adult female 05day    457 adult female 30day    475 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    279 embryo 02-04hr    549 embryo 04-06hr    776 embryo 06-08hr    2243 embryo 08-10hr    3918 embryo 10-12hr    6532 embryo 12-14hr    6599 embryo 14-16hr    4274 embryo 16-18hr    3599 embryo 18-20hr    2453 embryo 20-22hr    1916 embryo 22-24hr    2549 larva L1    1338 larva L2    1157 larva L3 12hr old    708 larva L3 puffstage 1-2    984 larva L3 puffstage 3-6    1658 larva L3 puffstage 7-9    3828 white prepupae new    3732 white prepupae 12hr    3195 white prepupae 24hr    3930 pupae 2d postWPP    4105 pupae 3d postWPP    2851 pupae 4d postWPP    1277 adult male 01day    894 adult male 05day    607 adult male 30day    551 adult female 01day    617 adult female 05day    457 adult female 30day    475 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    279 embryo 02-04hr    549 embryo 04-06hr    776 embryo 06-08hr    2243 embryo 08-10hr    3918 embryo 10-12hr    6532 embryo 12-14hr    6599 embryo 14-16hr    4274 embryo 16-18hr    3599 embryo 18-20hr    2453 embryo 20-22hr    1916 embryo 22-24hr    2549 larva L1    1338 larva L2    1157 larva L3 12hr old    708 larva L3 puffstage 1-2    984 larva L3 puffstage 3-6    1658 larva L3 puffstage 7-9    3828 white prepupae new    3732 white prepupae 12hr    3195 white prepupae 24hr    3930 pupae 2d postWPP    4105 pupae 3d postWPP    2851 pupae 4d postWPP    1277 adult male 01day    894 adult male 05day    607 adult male 30day    551 adult female 01day    617 adult female 05day    457 adult female 30day    475 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0037092    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0037092 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, larval/adult salivary gland, larval trachea, adult male accessory gland, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0037092 expression level Tissue   Expression Level Larval Central Nervous System    102.2 Larval Midgut    126.6 Larval Hindgut    113.8 Larval Malpighian Tubules    137.3 Larval Fat Body    48.5 Larval Salivary Gland    145.4 Larval Trachea    145.875 Larval Carcass    103.075 Adult Head    64.3 Adult Eye    30.15 Adult Brain    85.1 Adult Thoracic-Abdominal Ganglion    40.8 Adult Crop    101.1 Adult Midgut    274.3 Adult Hindgut    117 Adult Malpighian Tubules    46.6 Adult Fat Body    29.3 Adult Salivary Gland    188.3 Adult Heart    17.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    20.4 Adult Ovary    25.4 Adult Testis    21.6 Adult Male Accessory Gland    120.3 Adult Carcass    44.9 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    102.2 Larval Midgut    126.6 Larval Hindgut    113.8 Larval Malpighian Tubules    137.3 Larval Fat Body    48.5 Larval Salivary Gland    145.4 Larval Trachea    145.875 Larval Carcass    103.075 Adult Head    64.3 Adult Eye    30.15 Adult Brain    85.1 Adult Thoracic-Abdominal Ganglion    40.8 Adult Crop    101.1 Adult Midgut    274.3 Adult Hindgut    117 Adult Malpighian Tubules    46.6 Adult Fat Body    29.3 Adult Salivary Gland    188.3 Adult Heart    17.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    20.4 Adult Ovary    25.4 Adult Testis    21.6 Adult Male Accessory Gland    120.3 Adult Carcass    44.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    102.2 Larval Midgut    126.6 Larval Hindgut    113.8 Larval Malpighian Tubules    137.3 Larval Fat Body    48.5 Larval Salivary Gland    145.4 Larval Trachea    145.875 Larval Carcass    103.075 Adult Head    64.3 Adult Eye    30.15 Adult Brain    85.1 Adult Thoracic-Abdominal Ganglion    40.8 Adult Crop    101.1 Adult Midgut    274.3 Adult Hindgut    117 Adult Malpighian Tubules    46.6 Adult Fat Body    29.3 Adult Salivary Gland    188.3 Adult Heart    17.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    20.4 Adult Ovary    25.4 Adult Testis    21.6 Adult Male Accessory Gland    120.3 Adult Carcass    44.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    102.2 Larval Midgut    126.6 Larval Hindgut    113.8 Larval Malpighian Tubules    137.3 Larval Fat Body    48.5 Larval Salivary Gland    145.4 Larval Trachea    145.875 Larval Carcass    103.075 Adult Head    64.3 Adult Eye    30.15 Adult Brain    85.1 Adult Thoracic-Abdominal Ganglion    40.8 Adult Crop    101.1 Adult Midgut    274.3 Adult Hindgut    117 Adult Malpighian Tubules    46.6 Adult Fat Body    29.3 Adult Salivary Gland    188.3 Adult Heart    17.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    20.4 Adult Ovary    25.4 Adult Testis    21.6 Adult Male Accessory Gland    120.3 Adult Carcass    44.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0037092 expression level Tissue   Expression Level Larval Central Nervous System    102.2 Larval Midgut    126.6 Larval Hindgut    113.8 Larval Malpighian Tubules    137.3 Larval Fat Body    48.5 Larval Salivary Gland    145.4 Larval Trachea    145.875 Larval Carcass    103.075 Adult Head    64.3 Adult Eye    30.15 Adult Brain    85.1 Adult Thoracic-Abdominal Ganglion    40.8 Adult Crop    101.1 Adult Midgut    274.3 Adult Hindgut    117 Adult Malpighian Tubules    46.6 Adult Fat Body    29.3 Adult Salivary Gland    188.3 Adult Heart    17.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    20.4 Adult Ovary    25.4 Adult Testis    21.6 Adult Male Accessory Gland    120.3 Adult Carcass    44.9 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    102.2 Larval Midgut    126.6 Larval Hindgut    113.8 Larval Malpighian Tubules    137.3 Larval Fat Body    48.5 Larval Salivary Gland    145.4 Larval Trachea    145.875 Larval Carcass    103.075 Adult Head    64.3 Adult Eye    30.15 Adult Brain    85.1 Adult Thoracic-Abdominal Ganglion    40.8 Adult Crop    101.1 Adult Midgut    274.3 Adult Hindgut    117 Adult Malpighian Tubules    46.6 Adult Fat Body    29.3 Adult Salivary Gland    188.3 Adult Heart    17.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    20.4 Adult Ovary    25.4 Adult Testis    21.6 Adult Male Accessory Gland    120.3 Adult Carcass    44.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    102.2 Larval Midgut    126.6 Larval Hindgut    113.8 Larval Malpighian Tubules    137.3 Larval Fat Body    48.5 Larval Salivary Gland    145.4 Larval Trachea    145.875 Larval Carcass    103.075 Adult Head    64.3 Adult Eye    30.15 Adult Brain    85.1 Adult Thoracic-Abdominal Ganglion    40.8 Adult Crop    101.1 Adult Midgut    274.3 Adult Hindgut    117 Adult Malpighian Tubules    46.6 Adult Fat Body    29.3 Adult Salivary Gland    188.3 Adult Heart    17.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    20.4 Adult Ovary    25.4 Adult Testis    21.6 Adult Male Accessory Gland    120.3 Adult Carcass    44.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    102.2 Larval Midgut    126.6 Larval Hindgut    113.8 Larval Malpighian Tubules    137.3 Larval Fat Body    48.5 Larval Salivary Gland    145.4 Larval Trachea    145.875 Larval Carcass    103.075 Adult Head    64.3 Adult Eye    30.15 Adult Brain    85.1 Adult Thoracic-Abdominal Ganglion    40.8 Adult Crop    101.1 Adult Midgut    274.3 Adult Hindgut    117 Adult Malpighian Tubules    46.6 Adult Fat Body    29.3 Adult Salivary Gland    188.3 Adult Heart    17.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    20.4 Adult Ovary    25.4 Adult Testis    21.6 Adult Male Accessory Gland    120.3 Adult Carcass    44.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    64.3   NA  Eye    30.15   NA  Brain    85.1   102.2  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    40.8   NA  Crop    101.1   126.6  Midgut    274.3   113.8  Hindgut    117   137.3  Malpighian Tubules    46.6   48.5  Fat Body    29.3   145.4  Salivary Gland    188.3   NA  Heart    17.15   145.875  Trachea    NA   NA  VirginFemale Spermatheca    no informative data   NA  InseminatedFemale Spermatheca    20.4   NA  Ovary    25.4   NA  Testis    21.6   NA  Male Accessory Gland    120.3   103.075  Carcass    44.9 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_11
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037092 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7540-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for M6 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | recessive M6BG00390 M6MB02608 viable M6CA06602 M6EY07032 Sterility Allele female fertile M6Δ01-50 M6Δ01-730 M6Δ01-rev female semi-sterile | heat sensitive, with Scer\GAL4dm-PG45, Scer\GAL80ts.αTub84B M6KK109436 female semi-sterile | recessive M6Δ01-470 female sterile | heat sensitive, with Scer\GAL4dm-PG45, Scer\GAL80ts.αTub84B M6NIG.7540R female sterile | recessive M6EY07032 M6Δ01-580 M6Δ01-3200 M6Δ01-5100 M6Δ01-7500 fertile M6EY07032 male fertile M6EY07032 M6Δ01-rev Phenotype manifest in Allele border follicle cell | heat sensitive, with Scer\GAL4dm-PG45, Scer\GAL80ts.αTub84B M6KK109436 egg M6EY07032 egg | heat sensitive, with Scer\GAL4dm-PG45, Scer\GAL80ts.αTub84B M6KK109436 M6NIG.7540R egg chamber | heat sensitive, with Scer\GAL4dm-PG45, Scer\GAL80ts.αTub84B M6KK109436 follicle cell | heat sensitive, with Scer\GAL4dm-PG45, Scer\GAL80ts.αTub84B M6NIG.7540R
Classical Alleles ( 12 )
For All Classical Alleles Show
Allele of M6 Class Mutagen Stocks Known lesion M6BG00390 P-element activity 1 -- M6EY07032 hypomorphic allele - molecular evidence P-element activity 1 -- M6MB02608 1 -- M6CA06602 P-element activity 0 Yes M6Δ01-3200 Delta2-3 0 Yes M6Δ01-470 Delta2-3 0 Yes M6Δ01-50 Delta2-3 0 Yes M6Δ01-5100 Delta2-3 0 Yes M6Δ01-580 Delta2-3 0 Yes M6Δ01-730 Delta2-3 0 Yes M6Δ01-7500 Delta2-3 0 Yes M6Δ01-rev Delta2-3 0 Yes
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of M6 Class Mutagen Stocks Known lesion M6KK109436 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes M6GD3618 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes M6NIG.7540R in vitro construct - regulatory fusion in vitro construct - RNAi 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD3618} NA P{KK109436} NA characterization construct P{NIG.7540R} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{?EPgy2}M6Δ01-50 NA P{?EPgy2}M6Δ01-580 NA P{?EPgy2}M6Δ01-730 NA P{?EPgy2}M6Δ01-3200 NA P{?EPgy2}M6Δ01-5100 NA P{?EPgy2}M6Δ01-7500 NA P{?EPgy2}M6Δ01-470 NA P{GT1}M6BG00390 NA P{PTT-GA}M6CA06602 NA insertion of mobile activating element P{EPgy2}M6EY07032 NA insertion of enhancer trap binary system Mi{ET1}M6MB02608 No
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
oogenesis inferred from mutant phenotype (Zappia et al., 2011)
Cellular Component
CV term Evidence References
plasma membrane inferred from direct assay (Zappia et al., 2011)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function ( 0 terms)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
integral to membrane inferred from electronic annotation with InterPro:IPR001614 (FlyBase Curators et al., 2004-) plasma membrane inferred from sequence or structural similarity with mouse Gpm6a (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions M6 allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0037092 DroID - A comprehensive database of gene and protein interactions. • FBgn0037092 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40383
Orthologs
Genome-wide drosophilid orthologs	Dana\GF23719 Dere\GG16192 Dgri\GH16745 Dmoj\GI13470 Dper\GL11885 Dpse\GA20425 Dsec\GM22375 Dsim\GD14966 Dvir\GJ11833 Dwil\GK20404 Dyak\GE19763
Curated drosophilid orthologs	Dpse\GA20425
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL009367-PA Aedes aegypti (mosquito) AGAP012018-PA Anopheles gambiae (mosquito) XP_394320.2 Apis mellifera (honey bee) XP_001952193.1 Acyrthosiphon pisum (pea aphid) 232557 Branchiostoma floridae (lancelet) XP_001902103.1 Brugia malayi (roundworm nematode) BGIBMGA007755-PA Bombyx mori (silk worm) ENSBTAP00000005543 Bos taurus (bovine) CBP33554 Caenorhabditis briggsae (nematode) CE35476 Caenorhabditis elegans (worm) ENSCAFP00000012498 Canis familiaris (dog) JA07406 Caenorhabditis japonica (nematode) CPIJ004251 Culex pipens (mosquito) ENSCPOP00000002088 Cavia porcellus (guinea pig) RP25136 Caenorhabditis remanei (nematode) 228771 Capitella spl (polychaete worm) 305764 Daphnia pulex (daphnia) ENSDARP00000048171 Danio rerio (zebra fish) ENSECAP00000014508 Equus caballus (horse) ENSGACP00000021451 Gymnopilus aculeatus (mushroom) ENSGALP00000031562 Gallus gallus (chicken) 192219 Hypsipyla robusta (cedar shoot borer) ENSP00000377268 Homo sapiens (human) ISCW019554-PA Ixodes scapularis (deer tick) 165539 Lottia gigantea (owl limpet) ENSMODP00000004536 Monodelphis domestica (gray opossum) ENSMMUP00000034513 Macaca mulatta (rhesus monkey) ENSMUSP00000033915 Mus musculus (house mouse) XP_001606372.1 Nasonia vitripennis (wasp) ENSOANP00000005691 Ornithorynchus anatinus (platypus) ENSORLP00000025518 Oryzias latipes (japanese killifish) PHUM011588-PA Pediculus humanus (human body louse) PP00485 Pristionchus pacificus (nematode) ENSPPYP00000016996 Pongo pygmaeus (orangutan) ENSPTRP00000028497 Pan troglodytes (chimpanzee) ENSRNOP00000014312 Rattus norvegicus (norway rat) Smp_138460 Schistosoma mansoni (trematode parasite) XP_001179177.1 Strongylocentrotus purpuratus (purple sea urchin) XP_974373.2 Tribolium castaneum (red flour beetle) ENSTNIP00000017118 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000026338 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000005245 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB11582 NV14003 LH11954 ISCW019554 FBgn0240462 FBgn0237096 FBgn0222401 FBgn0199087 FBgn0186638 FBgn0177245 JGI_V11_305764 FBgn0080420 FBgn0149493 FBgn0136226 FBgn0124216 FBgn0108427 FBgn0100713 CPIJ004251 BGIBMGA007755 ACYPI007382 GB16856 AGAP012018 AAEL009367 PHUM616860 GLEAN_07808
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	12416 w1118; P{GT1}M6BG00390 16780 y1 w67c23; P{EPgy2}M6EY07032 24023 w1118; Mi{ET1}M6MB02608/TM3, Sb1 Ser1
Kyoto	108382 Df(1)M38-C5, yM38-C5/M6
VDRC	v101757 P{KK109436}VIE-260B
Genomic Clones ( 2 )
	BACR03O18 BACR26P10 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 165 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD13050
Other clones	DPiM_LD13050
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	RE04723 RE09015 RE11618 RE13442 RE14396 RE19718 RE20169 RE23159 RE26950 RE34662 RE35855 RE36632 RE38365 RE42402 RE43979 RE47166 RE49520 RE57633 RE57634 RE60484 RE61643 RE62590 RE62638 RE70480
Other clones	7723 18774 50289 58931 73763 79248 98978 102760 104313 108396 120643 153263 161451 172717 214313.49 214347.45 CK01.3A.F12 CK01.7A.F10 CK01.23A.C8 CK01.49A.C5 CK01.80B.F4 CK01.88D.A8 CK01.101D.C12 CK01.106D.H6 CK01.114A.G3 CK01.116B.E9 CK01.116B.H5 CK01837 CK02247 EC02023 EK004948 EK005014 EK062254 EK069836 EK085942 EK089262 EK118905 EK125560 EK133529 EK176316 EK181943 EK194529 EK203455 EK208615 EK213406 EK234360 EK244808 EK256359 EK273421 EP10211 EP11539 EP18203 GM07819 RP003002757 RP003007574 RP003017022 RP003018540 RP003019981 RP003075372 RP003082267 RP003083663 RP003083835 RP003110434 RP003113440 RP003116311 RP003117446 RP003130083 RP003136534 RP003150443 RP003153300 RP003154703 RP003158350 RP003166556 RP003172767 RP003174081 RP003179258 RP003180921 RP003184217 RP003187428 RP003192177 RP003202016 RP003203890 RP003223315 RP003225690 RP003226727 RP003230118 RP003230614 RP003231488 RP003241146 RP003254127 RP003267119 RP003267873 RP003271586 RP003272314 RP003272852 RP003281324 RP003286458 RP003289148 RP003289268 RP003298135 RP003299139 RP003301074 RP003313220 RP003315119 RP003329609 RP003330272 RP003396260 RP003402991 RP003429232 RP003434974 RP003444674 RP003453940 RP003457182 RP003475950 RP003484922 RP003493387 RP003522767 RP003524953 RP003525351 RP003533367 RP003546126 RP003552227 RP003552260 RP003562872 RP003569534 RP003575199 RP003585937 RP003586059 RP003595446 RP003603193 RP003606143 RP003607732 RP003608448 RP003620550 RP003626483 RP003634371 RP003652889 RP003656513 RP003668879
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0037092 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40383
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: M6 CG7540 (FlyBase, 1996-)
Source for database merge of
Additional comments	Source for identity of M6 CG7540 was sequence comparison (date:000525). (FlyBase, 1996-)
Other Comments
	Nonsense-mediated mRNA decay (NMD) down-regulates a distinct splice isoform(s) of this gene. (Hansen et al., 2009)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141066 NM_168911 RefSeq (Proteins) • NP_649323 NP_730642 DDBJ / EMBL / GenBank • AA141336 AA696516 AA816816 AAF51736 AAF71284 AAF71285 AAN12170 AAQ22538 AF253528 AW942256 AZ877634 AZ877635 BT010069 CL527968 Entrez Gene - A searchable database of RefSeq genes. • 40383 UniProtKB/TrEMBL • Q9NGC6 Q9VP23
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Myelin proteolipid protein PLP (IPR001614)
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0037092 DroID - A comprehensive database of gene and protein interactions. • FBgn0037092 DRSC - Results from RNAi screens. • FBgn0037092 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037092 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7540-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0037092 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40383 InParanoid A subset of ortholog calls from InParanoid. • AAEL009367-PA Aedes aegypti (mosquito) AGAP012018-PA Anopheles gambiae (mosquito) XP_394320.2 Apis mellifera (honey bee) XP_001952193.1 Acyrthosiphon pisum (pea aphid) 232557 Branchiostoma floridae (lancelet) XP_001902103.1 Brugia malayi (roundworm nematode) BGIBMGA007755-PA Bombyx mori (silk worm) ENSBTAP00000005543 Bos taurus (bovine) CBP33554 Caenorhabditis briggsae (nematode) CE35476 Caenorhabditis elegans (worm) ENSCAFP00000012498 Canis familiaris (dog) JA07406 Caenorhabditis japonica (nematode) CPIJ004251 Culex pipens (mosquito) ENSCPOP00000002088 Cavia porcellus (guinea pig) RP25136 Caenorhabditis remanei (nematode) 228771 Capitella spl (polychaete worm) 305764 Daphnia pulex (daphnia) ENSDARP00000048171 Danio rerio (zebra fish) ENSECAP00000014508 Equus caballus (horse) ENSGACP00000021451 Gymnopilus aculeatus (mushroom) ENSGALP00000031562 Gallus gallus (chicken) 192219 Hypsipyla robusta (cedar shoot borer) ENSP00000377268 Homo sapiens (human) ISCW019554-PA Ixodes scapularis (deer tick) 165539 Lottia gigantea (owl limpet) ENSMODP00000004536 Monodelphis domestica (gray opossum) ENSMMUP00000034513 Macaca mulatta (rhesus monkey) ENSMUSP00000033915 Mus musculus (house mouse) XP_001606372.1 Nasonia vitripennis (wasp) ENSOANP00000005691 Ornithorynchus anatinus (platypus) ENSORLP00000025518 Oryzias latipes (japanese killifish) PHUM011588-PA Pediculus humanus (human body louse) PP00485 Pristionchus pacificus (nematode) ENSPPYP00000016996 Pongo pygmaeus (orangutan) ENSPTRP00000028497 Pan troglodytes (chimpanzee) ENSRNOP00000014312 Rattus norvegicus (norway rat) Smp_138460 Schistosoma mansoni (trematode parasite) XP_001179177.1 Strongylocentrotus purpuratus (purple sea urchin) XP_974373.2 Tribolium castaneum (red flour beetle) ENSTNIP00000017118 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000026338 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000005245 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40383 modMine - Data generated by the modENCODE project. • FBgn0037092 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB11582 NV14003 LH11954 ISCW019554 FBgn0240462 FBgn0237096 FBgn0222401 FBgn0199087 FBgn0186638 FBgn0177245 JGI_V11_305764 FBgn0080420 FBgn0149493 FBgn0136226 FBgn0124216 FBgn0108427 FBgn0100713 CPIJ004251 BGIBMGA007755 ACYPI007382 GB16856 AGAP012018 AAEL009367 PHUM616860 GLEAN_07808
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	CG7540 (Hansen et al., 2009, Keleman et al., 2009.8.5) dM6a (Stecca et al., 2000) M6 (Buszczak et al., 2007, Kaltenbach et al., 2007, Hansen et al., 2009, Zappia et al., 2011)
Name Synonym	M6 (Kaltenbach et al., 2007)
Secondary FlyBase IDs
References ( 18 )
Research paper	Zappia et al., 2011, PLoS ONE 6(5): e19715 M6 membrane protein plays an essential role in Drosophila oogenesis. [FBrf0213770] Hansen et al., 2009, PLoS Genet. 5(6): e1000525 Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila. [FBrf0208149] Buszczak et al., 2007, Genetics 175(3): 1505--1531 The Carnegie protein trap library: A versatile tool for Drosophila developmental studies. [FBrf0200345] Kaltenbach et al., 2007, PLoS Genet. 3(5): e82 Huntingtin interacting proteins are genetic modifiers of neurodegeneration. [FBrf0201545] Inlow and Restifo, 2004, Genetics 166(2): 835--881 Molecular and comparative genetics of mental retardation. [FBrf0174714] Moehring and Mackay, 2004, Genetics 167(3): 1249--1263 The quantitative genetic basis of male mating behavior in Drosophila melanogaster. [FBrf0179348] Stecca et al., 2000, J. Neurosci. 20(11): 4002--4010 The evolution of lipophilin genes from invertebrates to tetrapods: dM-20 cannot replace proteolipid protein in CNS myelin. [FBrf0128810]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Bellen, 2007.7.9, batch750.xml batch750.xml [FBrf0199563] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
FlyBase analysis	FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]
DNA/RNA sequence record	Werner, 2000.4.7, GenBank/EMBL/DDBJ: AF253528 Drosophila melanogaster proteolipid protein M6 gene, complete cds, alternatively spliced. [FBrf0129530]