A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\slif

General Information
SymbolDmel\slifSpeciesD. melanogaster
NameslimfastAnnotation symbolCG11128
Feature typeprotein_coding_geneFlyBase IDFBgn0037203
Gene Model StatusCurrent Stock availability 13 publicly available
Genomic Location
Chromosome (arm)3LRecombination map
Cytogenetic map80B2-80B2Sequence location3L:22,874,146..22,886,929 [+]

Genomic Maps

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modENCODE GBrowse
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Automatically generated summary

See sections below for more information
The gene slimfast is referred to in FlyBase by the symbol Dmel\slif (CG11128, FBgn0037203). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: cationic amino acid transmembrane transporter activity. There is experimental evidence that it is involved in the biological process: lipid metabolic process; growth; amino acid transport. 14 alleles are reported. The phenotypes of these alleles are annotated with: larva; embryonic/larval fat body; wing; embryonic/larval neuroblast. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Amino acid permease domain; Amino acid/polyamine transporter I; Cationic amino acid transporter. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 00-06 and 18-24 hour embryonic stages, during early pupal stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval/adult midgut, larval/adult Malpighian tubules, adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult hindgut, larval salivary gland, larval trachea, adult testis, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1630957_s_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of slif. Gene sequence location is 3L:22874146..22886929.

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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01
Sequence features
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
80B2-80B2  
Limits computationally determined from genome sequence between P{lacW}l(3)j1B10j1B10 and P{lacW}l(3)j2C4j2C4  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\slif for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0078554 FBtr0078555 FBtr0078556 FBtr0078557 FBpp0078205 FBpp0078207 FBpp0078208 FBpp0078206 FBti0067567 FBti0125873 FBti0125874 FBti0132602 FBti0048129 FBti0052828 FBti0049358 FBti0067874 FBti0050109 FBti0051468 FBti0109271 FBti0039918 FBti0021541 FBti0064813
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0078555
  2751
  604
FBtr0078557
  2531
  604
FBtr0078556
  2658
  604
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0078206  
66.0  
604  
6.16  
FBpp0078208  
66.0  
604  
6.16  
FBpp0078207  
66.0  
604  
6.16  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
slif transcript is detected in most larval tissues but high expression is observed in the gut and the fat body.
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view Ssl1-RA slif-RA slif-RC slif-RB
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0037203


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0037203
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 00-06 and 18-24 hour embryonic stages, during early pupal stages, in adult female stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0037203 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 7096
embryo 02-04hr
 
 282
embryo 04-06hr
 
 123
embryo 06-08hr
 
 77
embryo 08-10hr
 
 99
embryo 10-12hr
 
 78
embryo 12-14hr
 
 125
embryo 14-16hr
 
 635
embryo 16-18hr
 
 3372
embryo 18-20hr
 
 5122
embryo 20-22hr
 
 3504
embryo 22-24hr
 
 3862
larva L1
 
 1602
larva L2
 
 1244
larva L3 12hr old
 
 1036
larva L3 puffstage 1-2
 
 1717
larva L3 puffstage 3-6
 
 1332
larva L3 puffstage 7-9
 
 2888
white prepupae new
 
 6480
white prepupae 12hr
 
 995
white prepupae 24hr
 
 121
pupae 2d postWPP
 
 351
pupae 3d postWPP
 
 951
pupae 4d postWPP
 
 1942
adult male 01day
 
 1023
adult male 05day
 
 968
adult male 30day
 
 836
adult female 01day
 
 3900
adult female 05day
 
 5966
adult female 30day
 
 5649
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (7096)
embryo 02-04hr
 (282)
embryo 04-06hr
 (123)
embryo 06-08hr
 
 77
embryo 08-10hr
 
 99
embryo 10-12hr
 
 78
embryo 12-14hr
 (125)
embryo 14-16hr
 (635)
embryo 16-18hr
 (3372)
embryo 18-20hr
 (5122)
embryo 20-22hr
 (3504)
embryo 22-24hr
 (3862)
larva L1
 (1602)
larva L2
 (1244)
larva L3 12hr old
 (1036)
larva L3 puffstage 1-2
 (1717)
larva L3 puffstage 3-6
 (1332)
larva L3 puffstage 7-9
 (2888)
white prepupae new
 (6480)
white prepupae 12hr
 (995)
white prepupae 24hr
 (121)
pupae 2d postWPP
 (351)
pupae 3d postWPP
 (951)
pupae 4d postWPP
 (1942)
adult male 01day
 (1023)
adult male 05day
 (968)
adult male 30day
 (836)
adult female 01day
 (3900)
adult female 05day
 (5966)
adult female 30day
 (5649)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (7096)
embryo 02-04hr
 
 282
embryo 04-06hr
 
 123
embryo 06-08hr
 
 77
embryo 08-10hr
 
 99
embryo 10-12hr
 
 78
embryo 12-14hr
 
 125
embryo 14-16hr
 
 635
embryo 16-18hr
 (3372)
embryo 18-20hr
 (5122)
embryo 20-22hr
 (3504)
embryo 22-24hr
 (3862)
larva L1
 (1602)
larva L2
 
 1244
larva L3 12hr old
 
 1036
larva L3 puffstage 1-2
 (1717)
larva L3 puffstage 3-6
 
 1332
larva L3 puffstage 7-9
 (2888)
white prepupae new
 (6480)
white prepupae 12hr
 
 995
white prepupae 24hr
 
 121
pupae 2d postWPP
 
 351
pupae 3d postWPP
 
 951
pupae 4d postWPP
 (1942)
adult male 01day
 
 1023
adult male 05day
 
 968
adult male 30day
 
 836
adult female 01day
 (3900)
adult female 05day
 (5966)
adult female 30day
 (5649)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 7096
embryo 02-04hr
 
 282
embryo 04-06hr
 
 123
embryo 06-08hr
 
 77
embryo 08-10hr
 
 99
embryo 10-12hr
 
 78
embryo 12-14hr
 
 125
embryo 14-16hr
 
 635
embryo 16-18hr
 
 3372
embryo 18-20hr
 
 5122
embryo 20-22hr
 
 3504
embryo 22-24hr
 
 3862
larva L1
 
 1602
larva L2
 
 1244
larva L3 12hr old
 
 1036
larva L3 puffstage 1-2
 
 1717
larva L3 puffstage 3-6
 
 1332
larva L3 puffstage 7-9
 
 2888
white prepupae new
 
 6480
white prepupae 12hr
 
 995
white prepupae 24hr
 
 121
pupae 2d postWPP
 
 351
pupae 3d postWPP
 
 951
pupae 4d postWPP
 
 1942
adult male 01day
 
 1023
adult male 05day
 
 968
adult male 30day
 
 836
adult female 01day
 
 3900
adult female 05day
 
 5966
adult female 30day
 
 5649
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 7096
embryo 02-04hr
 
 282
embryo 04-06hr
 
 123
embryo 06-08hr
 
 77
embryo 08-10hr
 
 99
embryo 10-12hr
 
 78
embryo 12-14hr
 
 125
embryo 14-16hr
 
 635
embryo 16-18hr
 
 3372
embryo 18-20hr
 
 5122
embryo 20-22hr
 
 3504
embryo 22-24hr
 
 3862
larva L1
 
 1602
larva L2
 
 1244
larva L3 12hr old
 
 1036
larva L3 puffstage 1-2
 
 1717
larva L3 puffstage 3-6
 
 1332
larva L3 puffstage 7-9
 
 2888
white prepupae new
 
 6480
white prepupae 12hr
 
 995
white prepupae 24hr
 
 121
pupae 2d postWPP
 
 351
pupae 3d postWPP
 
 951
pupae 4d postWPP
 
 1942
adult male 01day
 
 1023
adult male 05day
 
 968
adult male 30day
 
 836
adult female 01day
 
 3900
adult female 05day
 
 5966
adult female 30day
 
 5649
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0037203 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 7096
embryo 02-04hr
 
 282
embryo 04-06hr
 
 123
embryo 06-08hr
 
 77
embryo 08-10hr
 
 99
embryo 10-12hr
 
 78
embryo 12-14hr
 
 125
embryo 14-16hr
 
 635
embryo 16-18hr
 
 3372
embryo 18-20hr
 
 5122
embryo 20-22hr
 
 3504
embryo 22-24hr
 
 3862
larva L1
 
 1602
larva L2
 
 1244
larva L3 12hr old
 
 1036
larva L3 puffstage 1-2
 
 1717
larva L3 puffstage 3-6
 
 1332
larva L3 puffstage 7-9
 
 2888
white prepupae new
 
 6480
white prepupae 12hr
 
 995
white prepupae 24hr
 
 121
pupae 2d postWPP
 
 351
pupae 3d postWPP
 
 951
pupae 4d postWPP
 
 1942
adult male 01day
 
 1023
adult male 05day
 
 968
adult male 30day
 
 836
adult female 01day
 
 3900
adult female 05day
 
 5966
adult female 30day
 
 5649
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (7096)
embryo 02-04hr
 (282)
embryo 04-06hr
 123
embryo 06-08hr
 
 77
embryo 08-10hr
 
 99
embryo 10-12hr
 
 78
embryo 12-14hr
 125
embryo 14-16hr
 (635)
embryo 16-18hr
 (3372)
embryo 18-20hr
 (5122)
embryo 20-22hr
 (3504)
embryo 22-24hr
 (3862)
larva L1
 (1602)
larva L2
 (1244)
larva L3 12hr old
 (1036)
larva L3 puffstage 1-2
 (1717)
larva L3 puffstage 3-6
 (1332)
larva L3 puffstage 7-9
 (2888)
white prepupae new
 (6480)
white prepupae 12hr
 (995)
white prepupae 24hr
 121
pupae 2d postWPP
 (351)
pupae 3d postWPP
 (951)
pupae 4d postWPP
 (1942)
adult male 01day
 (1023)
adult male 05day
 (968)
adult male 30day
 (836)
adult female 01day
 (3900)
adult female 05day
 (5966)
adult female 30day
 (5649)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (7096)
embryo 02-04hr
 
 282
embryo 04-06hr
 
 123
embryo 06-08hr
 
 77
embryo 08-10hr
 
 99
embryo 10-12hr
 
 78
embryo 12-14hr
 
 125
embryo 14-16hr
 
 635
embryo 16-18hr
 (3372)
embryo 18-20hr
 (5122)
embryo 20-22hr
 (3504)
embryo 22-24hr
 (3862)
larva L1
 1602
larva L2
 
 1244
larva L3 12hr old
 
 1036
larva L3 puffstage 1-2
 1717
larva L3 puffstage 3-6
 
 1332
larva L3 puffstage 7-9
 (2888)
white prepupae new
 (6480)
white prepupae 12hr
 
 995
white prepupae 24hr
 
 121
pupae 2d postWPP
 
 351
pupae 3d postWPP
 
 951
pupae 4d postWPP
 1942
adult male 01day
 
 1023
adult male 05day
 
 968
adult male 30day
 
 836
adult female 01day
 (3900)
adult female 05day
 (5966)
adult female 30day
 (5649)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 7096
embryo 02-04hr
 
 282
embryo 04-06hr
 
 123
embryo 06-08hr
 
 77
embryo 08-10hr
 
 99
embryo 10-12hr
 
 78
embryo 12-14hr
 
 125
embryo 14-16hr
 
 635
embryo 16-18hr
 
 3372
embryo 18-20hr
 
 5122
embryo 20-22hr
 
 3504
embryo 22-24hr
 
 3862
larva L1
 
 1602
larva L2
 
 1244
larva L3 12hr old
 
 1036
larva L3 puffstage 1-2
 
 1717
larva L3 puffstage 3-6
 
 1332
larva L3 puffstage 7-9
 
 2888
white prepupae new
 
 6480
white prepupae 12hr
 
 995
white prepupae 24hr
 
 121
pupae 2d postWPP
 
 351
pupae 3d postWPP
 
 951
pupae 4d postWPP
 
 1942
adult male 01day
 
 1023
adult male 05day
 
 968
adult male 30day
 
 836
adult female 01day
 
 3900
adult female 05day
 
 5966
adult female 30day
 
 5649
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 7096
embryo 02-04hr
 
 282
embryo 04-06hr
 
 123
embryo 06-08hr
 
 77
embryo 08-10hr
 
 99
embryo 10-12hr
 
 78
embryo 12-14hr
 
 125
embryo 14-16hr
 
 635
embryo 16-18hr
 
 3372
embryo 18-20hr
 
 5122
embryo 20-22hr
 
 3504
embryo 22-24hr
 
 3862
larva L1
 
 1602
larva L2
 
 1244
larva L3 12hr old
 
 1036
larva L3 puffstage 1-2
 
 1717
larva L3 puffstage 3-6
 
 1332
larva L3 puffstage 7-9
 
 2888
white prepupae new
 
 6480
white prepupae 12hr
 
 995
white prepupae 24hr
 
 121
pupae 2d postWPP
 
 351
pupae 3d postWPP
 
 951
pupae 4d postWPP
 
 1942
adult male 01day
 
 1023
adult male 05day
 
 968
adult male 30day
 
 836
adult female 01day
 
 3900
adult female 05day
 
 5966
adult female 30day
 
 5649
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0037203


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0037203
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval/adult midgut, larval/adult Malpighian tubules, adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult hindgut, larval salivary gland, larval trachea, adult testis, larval carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0037203 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 2.075
Larval Midgut
 
 764.4
Larval Hindgut
 
 416.8
Larval Malpighian Tubules
 
 2369.9
Larval Fat Body
 
 2.8
Larval Salivary Gland
 
 242.9
Larval Trachea
 
 148.475
Larval Carcass
 
 353.225
Adult Head
 
 69.9
Adult Eye
 
 45.575
Adult Brain
 
 13.9
Adult Thoracic-Abdominal Ganglion
 
 69.2
Adult Crop
 
 69.2
Adult Midgut
 
 1228.5
Adult Hindgut
 
 491.9
Adult Malpighian Tubules
 
 844.7
Adult Fat Body
 
 16.7
Adult Salivary Gland
 
 54.9
Adult Heart
 
 6.775
Adult VirginFemale Spermatheca
 
 50.5
Adult InseminatedFemale Spermatheca
 
 82.6
Adult Ovary
 
 813.2
Adult Testis
 
 113
Adult Male Accessory Gland
 
 43.1
Adult Carcass
 
 81.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 2.075
Larval Midgut
 (764.4)
Larval Hindgut
 
 416.8
Larval Malpighian Tubules
 (2369.9)
Larval Fat Body
 
 2.8
Larval Salivary Gland
 
 242.9
Larval Trachea
 
 148.475
Larval Carcass
 
 353.225
Adult Head
 
 69.9
Adult Eye
 
 45.575
Adult Brain
 
 13.9
Adult Thoracic-Abdominal Ganglion
 
 69.2
Adult Crop
 
 69.2
Adult Midgut
 (1228.5)
Adult Hindgut
 
 491.9
Adult Malpighian Tubules
 (844.7)
Adult Fat Body
 
 16.7
Adult Salivary Gland
 
 54.9
Adult Heart
 
 6.775
Adult VirginFemale Spermatheca
 
 50.5
Adult InseminatedFemale Spermatheca
 
 82.6
Adult Ovary
 (813.2)
Adult Testis
 
 113
Adult Male Accessory Gland
 
 43.1
Adult Carcass
 
 81.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 2.075
Larval Midgut
 
 764.4
Larval Hindgut
 
 416.8
Larval Malpighian Tubules
 (2369.9)
Larval Fat Body
 
 2.8
Larval Salivary Gland
 
 242.9
Larval Trachea
 
 148.475
Larval Carcass
 
 353.225
Adult Head
 
 69.9
Adult Eye
 
 45.575
Adult Brain
 
 13.9
Adult Thoracic-Abdominal Ganglion
 
 69.2
Adult Crop
 
 69.2
Adult Midgut
 (1228.5)
Adult Hindgut
 
 491.9
Adult Malpighian Tubules
 
 844.7
Adult Fat Body
 
 16.7
Adult Salivary Gland
 
 54.9
Adult Heart
 
 6.775
Adult VirginFemale Spermatheca
 
 50.5
Adult InseminatedFemale Spermatheca
 
 82.6
Adult Ovary
 
 813.2
Adult Testis
 
 113
Adult Male Accessory Gland
 
 43.1
Adult Carcass
 
 81.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 2.075
Larval Midgut
 
 764.4
Larval Hindgut
 
 416.8
Larval Malpighian Tubules
 
 2369.9
Larval Fat Body
 
 2.8
Larval Salivary Gland
 
 242.9
Larval Trachea
 
 148.475
Larval Carcass
 
 353.225
Adult Head
 
 69.9
Adult Eye
 
 45.575
Adult Brain
 
 13.9
Adult Thoracic-Abdominal Ganglion
 
 69.2
Adult Crop
 
 69.2
Adult Midgut
 
 1228.5
Adult Hindgut
 
 491.9
Adult Malpighian Tubules
 
 844.7
Adult Fat Body
 
 16.7
Adult Salivary Gland
 
 54.9
Adult Heart
 
 6.775
Adult VirginFemale Spermatheca
 
 50.5
Adult InseminatedFemale Spermatheca
 
 82.6
Adult Ovary
 
 813.2
Adult Testis
 
 113
Adult Male Accessory Gland
 
 43.1
Adult Carcass
 
 81.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0037203 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 2.075
Larval Midgut
 
 764.4
Larval Hindgut
 
 416.8
Larval Malpighian Tubules
 
 2369.9
Larval Fat Body
 
 2.8
Larval Salivary Gland
 
 242.9
Larval Trachea
 
 148.475
Larval Carcass
 
 353.225
Adult Head
 
 69.9
Adult Eye
 
 45.575
Adult Brain
 
 13.9
Adult Thoracic-Abdominal Ganglion
 
 69.2
Adult Crop
 
 69.2
Adult Midgut
 
 1228.5
Adult Hindgut
 
 491.9
Adult Malpighian Tubules
 
 844.7
Adult Fat Body
 
 16.7
Adult Salivary Gland
 
 54.9
Adult Heart
 
 6.775
Adult VirginFemale Spermatheca
 
 50.5
Adult InseminatedFemale Spermatheca
 
 82.6
Adult Ovary
 
 813.2
Adult Testis
 
 113
Adult Male Accessory Gland
 
 43.1
Adult Carcass
 
 81.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 2.075
Larval Midgut
 764.4
Larval Hindgut
 
 416.8
Larval Malpighian Tubules
 (2369.9)
Larval Fat Body
 
 2.8
Larval Salivary Gland
 
 242.9
Larval Trachea
 
 148.475
Larval Carcass
 
 353.225
Adult Head
 
 69.9
Adult Eye
 
 45.575
Adult Brain
 
 13.9
Adult Thoracic-Abdominal Ganglion
 
 69.2
Adult Crop
 
 69.2
Adult Midgut
 (1228.5)
Adult Hindgut
 
 491.9
Adult Malpighian Tubules
 (844.7)
Adult Fat Body
 
 16.7
Adult Salivary Gland
 
 54.9
Adult Heart
 
 6.775
Adult VirginFemale Spermatheca
 
 50.5
Adult InseminatedFemale Spermatheca
 
 82.6
Adult Ovary
 813.2
Adult Testis
 
 113
Adult Male Accessory Gland
 
 43.1
Adult Carcass
 
 81.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 2.075
Larval Midgut
 
 764.4
Larval Hindgut
 
 416.8
Larval Malpighian Tubules
 (2369.9)
Larval Fat Body
 
 2.8
Larval Salivary Gland
 
 242.9
Larval Trachea
 
 148.475
Larval Carcass
 
 353.225
Adult Head
 
 69.9
Adult Eye
 
 45.575
Adult Brain
 
 13.9
Adult Thoracic-Abdominal Ganglion
 
 69.2
Adult Crop
 
 69.2
Adult Midgut
 1228.5
Adult Hindgut
 
 491.9
Adult Malpighian Tubules
 
 844.7
Adult Fat Body
 
 16.7
Adult Salivary Gland
 
 54.9
Adult Heart
 
 6.775
Adult VirginFemale Spermatheca
 
 50.5
Adult InseminatedFemale Spermatheca
 
 82.6
Adult Ovary
 
 813.2
Adult Testis
 
 113
Adult Male Accessory Gland
 
 43.1
Adult Carcass
 
 81.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 2.075
Larval Midgut
 
 764.4
Larval Hindgut
 
 416.8
Larval Malpighian Tubules
 
 2369.9
Larval Fat Body
 
 2.8
Larval Salivary Gland
 
 242.9
Larval Trachea
 
 148.475
Larval Carcass
 
 353.225
Adult Head
 
 69.9
Adult Eye
 
 45.575
Adult Brain
 
 13.9
Adult Thoracic-Abdominal Ganglion
 
 69.2
Adult Crop
 
 69.2
Adult Midgut
 
 1228.5
Adult Hindgut
 
 491.9
Adult Malpighian Tubules
 
 844.7
Adult Fat Body
 
 16.7
Adult Salivary Gland
 
 54.9
Adult Heart
 
 6.775
Adult VirginFemale Spermatheca
 
 50.5
Adult InseminatedFemale Spermatheca
 
 82.6
Adult Ovary
 
 813.2
Adult Testis
 
 113
Adult Male Accessory Gland
 
 43.1
Adult Carcass
 
 81.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 69.9
 
NA 
Eye
 
 45.575
 
NA 
Brain
 
 13.9
 
2.075 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 69.2
 
NA 
Crop
 
 69.2
 
764.4 
Midgut
 
 1228.5
 
416.8 
Hindgut
 
 491.9
 
2369.9 
Malpighian Tubules
 
 844.7
 
2.8 
Fat Body
 
 16.7
 
242.9 
Salivary Gland
 
 54.9
 
NA 
Heart
 
 6.775
 
148.475 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 50.5
 
NA 
InseminatedFemale Spermatheca
 
 82.6
 
NA 
Ovary
 
 813.2
 
NA 
Testis
 
 113
 
NA 
Male Accessory Gland
 
 43.1
 
353.225 
Carcass
 
 81.5

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyExpress - Embryonic expression images (BDGP data)
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
lipid droplet & larval fat body, with Scer\GAL4ppl.PP
lipid droplet & larval oenocyte, with Scer\GAL4Lsp2.PH
lipid droplet & larval oenocyte, with Scer\GAL4ppl.PP
hide Classical Alleles ( 11 )
For All Classical Alleles Show

Allele of slifClassMutagenStocksKnown lesion
slife031561 --
slifEY035701 --
sliff005411 --
sliff016401 --
sliff038281 --
sliff062191 --
slifKG027611 --
slifMI01305
1 --
slif1hypomorphic allele - genetic evidence0 Yes
sliff052720 --
slifUY6810 Yes
hide Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show

Allele of slifClassMutagenStocksKnown lesion
slifGD126195 Yes
slifKK1016430 Yes
slifScer\UAS.cCa0 Yes
hide Aneuploid Aberrations
Disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of mobile activating element
hide Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
hide Terms Based on Experimental Evidence ( 4 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
inferred from direct assay
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component ( 0 terms)
hide Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity with EMBL:AB000113
Biological Process
CV term
References
Cellular Component
CV term
References
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
slif allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 13 )
Bloomington
Harvard
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 64 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for identity of: slif CG11128
Source for database merge of
Additional comments
hide Other Comments
The localisation and levels of slif are sensitive to Tor activity, with high levels of Tor signaling resulting in accumulation of slif near the cell surface, and decreased Tor signaling leading to slif down-regulation.
Identification: in a screen for growth modifiers.
Disruption of slif function in the fat body results in a developmental growth defect similar to that seen under amino acid deprivation.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym
Name Synonym
Secondary FlyBase IDs
hide References ( 42 )
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List References by type
hide Recent research papers ( 4 )
Cheng et al., 2011, Cell 146(3): 435--447
Anaplastic Lymphoma Kinase Spares Organ Growth during Nutrient Restriction in Drosophila. [FBrf0214599]
Resnik-Docampo and de Celis, 2011, PLoS ONE 6(1): e14528
MAP4K3 Is a Component of the TORC1 Signalling Complex that Modulates Cell Growth and Viability in Drosophila melanogaster. [FBrf0212911]
Sousa-Nunes et al., 2011, Nature 471(7339): 508--512
Fat cells reactivate quiescent neuroblasts via TOR and glial insulin relays in Drosophila. [FBrf0214426]
Arancio et al., 2010, Genetics 185(1): 129--140
The nucleosome remodeling factor ISWI functionally interacts with an evolutionarily conserved network of cellular factors. [FBrf0213976]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2010