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Gene Dmel\CG12581

General Information
Symbol	Dmel\CG12581	Species	D. melanogaster
Name		Annotation symbol	CG12581
Feature type	protein_coding_gene	FlyBase ID	FBgn0037213
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	81F5-81F6	Sequence location	3R:354..12,473 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG12581 (FBgn0037213). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 4 alleles are reported. The phenotypes of these alleles are annotated with: trichogen cell; mesothoracic tergum. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Pleckstrin homology-like domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult crop, larval trachea. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult hindgut, larval fat body, adult salivary gland, adult spermathecae, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1633280_s_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG12581. Gene sequence location is 3R:354..12473.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 81F5-81F6   Limits computationally determined from genome sequence between P{PZ}l(3)0273302733 and P{EP}EP974
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG12581 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46 Tissue-specific extension of 3' UTRs observed during later stages (FBrf0218523, FBrf0219848); all variants may not be annotated Annotated transcripts do not represent all supported alternative splices within 5' UTR. Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG12581-RA FBtr0078962  NM_141178   3183   665 CG12581-RB FBtr0078961  NM_164313   5393   665
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG12581-PA   FBpp0078602   70.8   665   10.25     NP_649435   AAF52174 CG12581-PB   FBpp0078601   70.8   665   10.25     NP_730781   AAN13329
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Pleckstrin homology-like domain (IPR011993)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA140909   AA141238   AA695505   AA697774   AA697780   AA804076   AA941257   AE014297 AAF52174   AE014297 AAN13329   AI257275   AW941182   AW942727   AY059451 AAL13357   AY070849 AAL48471   BG637665   BI168800   BI171397   BI173298   BI173300   BI216142   BI227752   BI228396   BI237988   BI243762   BI357424   BI485495   BI575146   BI586370   BT056255   BT133303   CK131177   CK657559   CK661177   CK662380   CO189415   CO191301   CO272273   CO276164   CO278417   CO281188   CO288805   CO289336   CO291654   CO292041   CO294498   CO310281   CO312417   CO312658   CO313334   CO318274   CO319106   CO319107   CO328792   CO339887   CO343416   EC058858   EC061753   EC064639   EC064841   EC068612   EC080717   EC081676   EC083674   EC090095   EC090837   EC197872   EC200798   EC201012   EC202456   EC207164   EC216805   EC219035   EC225634   EC231997   EC235836   EC241987   EC244480   EC246960   EC250101   EC250334   EC250335   GH738799   GH738806   GH739183   GH741953   GH743192   GH743695   GH744118   GH744689   GH745434   GH745794   GH763114   GH767366   GH767481   GH767863   GH768694   GH768703   GO254559
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VMY3 Q95TE1 Q8T953
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 4 -- 6   organism | pair rule expression pattern   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) yolk nucleus   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   antennal primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium central brain primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium visual primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium dorsal head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium lateral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium ventral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium dorsal ectoderm   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   clypeo-labral primordium   (Fisher et al., 2012) dorsal epidermis primordium   (Fisher et al., 2012) dorsal head epidermis primordium   (Fisher et al., 2012) Comment:reported as head epidermis primordium lateral head epidermis primordium   (Fisher et al., 2012) Comment:reported as head epidermis primordium ventral head epidermis primordium   (Fisher et al., 2012) Comment:reported as head epidermis primordium foregut primordium   (Fisher et al., 2012) hindgut proper primordium   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) tracheal primordium   (Fisher et al., 2012) ventral epidermis primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   atrium   (Fisher et al., 2012) embryonic dorsal epidermis   (Fisher et al., 2012) embryonic epipharynx   (Fisher et al., 2012) embryonic foregut   (Fisher et al., 2012) embryonic head epidermis   (Fisher et al., 2012) embryonic hindgut   (Fisher et al., 2012) embryonic hypopharynx   (Fisher et al., 2012) embryonic ventral epidermis   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult crop, larval trachea. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult hindgut, larval fat body, adult salivary gland, adult spermathecae, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    81.35 Larval Midgut    29 Larval Hindgut    316.7 Larval Malpighian Tubules    50.9 Larval Fat Body    169.5 Larval Salivary Gland    81.7 Larval Trachea    522.5 Larval Carcass    227.05 Adult Head    222 Adult Eye    169 Adult Brain    13.9 Adult Thoracic-Abdominal Ganglion    9.5 Adult Crop    900.8 Adult Midgut    17.5 Adult Hindgut    417.7 Adult Malpighian Tubules    22.8 Adult Fat Body    49.7 Adult Salivary Gland    135 Adult Heart    28.1 Adult VirginFemale Spermatheca    189.2 Adult InseminatedFemale Spermatheca    218.4 Adult Ovary    37.6 Adult Testis    8.3 Adult Male Accessory Gland    420.4 Adult Carcass    260.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    81.35 Larval Midgut    29 Larval Hindgut    316.7 Larval Malpighian Tubules    50.9 Larval Fat Body    169.5 Larval Salivary Gland    81.7 Larval Trachea  522.5 Larval Carcass    227.05 Adult Head    222 Adult Eye    169 Adult Brain    13.9 Adult Thoracic-Abdominal Ganglion    9.5 Adult Crop  (900.8) Adult Midgut    17.5 Adult Hindgut    417.7 Adult Malpighian Tubules    22.8 Adult Fat Body    49.7 Adult Salivary Gland    135 Adult Heart    28.1 Adult VirginFemale Spermatheca    189.2 Adult InseminatedFemale Spermatheca    218.4 Adult Ovary    37.6 Adult Testis    8.3 Adult Male Accessory Gland    420.4 Adult Carcass    260.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    81.35 Larval Midgut    29 Larval Hindgut    316.7 Larval Malpighian Tubules    50.9 Larval Fat Body    169.5 Larval Salivary Gland    81.7 Larval Trachea    522.5 Larval Carcass    227.05 Adult Head    222 Adult Eye    169 Adult Brain    13.9 Adult Thoracic-Abdominal Ganglion    9.5 Adult Crop    900.8 Adult Midgut    17.5 Adult Hindgut    417.7 Adult Malpighian Tubules    22.8 Adult Fat Body    49.7 Adult Salivary Gland    135 Adult Heart    28.1 Adult VirginFemale Spermatheca    189.2 Adult InseminatedFemale Spermatheca    218.4 Adult Ovary    37.6 Adult Testis    8.3 Adult Male Accessory Gland    420.4 Adult Carcass    260.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    81.35 Larval Midgut    29 Larval Hindgut    316.7 Larval Malpighian Tubules    50.9 Larval Fat Body    169.5 Larval Salivary Gland    81.7 Larval Trachea    522.5 Larval Carcass    227.05 Adult Head    222 Adult Eye    169 Adult Brain    13.9 Adult Thoracic-Abdominal Ganglion    9.5 Adult Crop    900.8 Adult Midgut    17.5 Adult Hindgut    417.7 Adult Malpighian Tubules    22.8 Adult Fat Body    49.7 Adult Salivary Gland    135 Adult Heart    28.1 Adult VirginFemale Spermatheca    189.2 Adult InseminatedFemale Spermatheca    218.4 Adult Ovary    37.6 Adult Testis    8.3 Adult Male Accessory Gland    420.4 Adult Carcass    260.7 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    81.35 Larval Midgut    29 Larval Hindgut    316.7 Larval Malpighian Tubules    50.9 Larval Fat Body    169.5 Larval Salivary Gland    81.7 Larval Trachea    522.5 Larval Carcass    227.05 Adult Head    222 Adult Eye    169 Adult Brain    13.9 Adult Thoracic-Abdominal Ganglion    9.5 Adult Crop    900.8 Adult Midgut    17.5 Adult Hindgut    417.7 Adult Malpighian Tubules    22.8 Adult Fat Body    49.7 Adult Salivary Gland    135 Adult Heart    28.1 Adult VirginFemale Spermatheca    189.2 Adult InseminatedFemale Spermatheca    218.4 Adult Ovary    37.6 Adult Testis    8.3 Adult Male Accessory Gland    420.4 Adult Carcass    260.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    81.35 Larval Midgut    29 Larval Hindgut    316.7 Larval Malpighian Tubules    50.9 Larval Fat Body    169.5 Larval Salivary Gland    81.7 Larval Trachea  522.5 Larval Carcass    227.05 Adult Head    222 Adult Eye    169 Adult Brain    13.9 Adult Thoracic-Abdominal Ganglion    9.5 Adult Crop  (900.8) Adult Midgut    17.5 Adult Hindgut    417.7 Adult Malpighian Tubules    22.8 Adult Fat Body    49.7 Adult Salivary Gland    135 Adult Heart    28.1 Adult VirginFemale Spermatheca    189.2 Adult InseminatedFemale Spermatheca    218.4 Adult Ovary    37.6 Adult Testis    8.3 Adult Male Accessory Gland    420.4 Adult Carcass    260.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    81.35 Larval Midgut    29 Larval Hindgut    316.7 Larval Malpighian Tubules    50.9 Larval Fat Body    169.5 Larval Salivary Gland    81.7 Larval Trachea    522.5 Larval Carcass    227.05 Adult Head    222 Adult Eye    169 Adult Brain    13.9 Adult Thoracic-Abdominal Ganglion    9.5 Adult Crop    900.8 Adult Midgut    17.5 Adult Hindgut    417.7 Adult Malpighian Tubules    22.8 Adult Fat Body    49.7 Adult Salivary Gland    135 Adult Heart    28.1 Adult VirginFemale Spermatheca    189.2 Adult InseminatedFemale Spermatheca    218.4 Adult Ovary    37.6 Adult Testis    8.3 Adult Male Accessory Gland    420.4 Adult Carcass    260.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    81.35 Larval Midgut    29 Larval Hindgut    316.7 Larval Malpighian Tubules    50.9 Larval Fat Body    169.5 Larval Salivary Gland    81.7 Larval Trachea    522.5 Larval Carcass    227.05 Adult Head    222 Adult Eye    169 Adult Brain    13.9 Adult Thoracic-Abdominal Ganglion    9.5 Adult Crop    900.8 Adult Midgut    17.5 Adult Hindgut    417.7 Adult Malpighian Tubules    22.8 Adult Fat Body    49.7 Adult Salivary Gland    135 Adult Heart    28.1 Adult VirginFemale Spermatheca    189.2 Adult InseminatedFemale Spermatheca    218.4 Adult Ovary    37.6 Adult Testis    8.3 Adult Male Accessory Gland    420.4 Adult Carcass    260.7 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    222   NA  Eye    169   NA  Brain    13.9   81.35  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    9.5   NA  Crop    900.8   29  Midgut    no informative data   316.7  Hindgut    417.7   50.9  Malpighian Tubules    no informative data   169.5  Fat Body    49.7   81.7  Salivary Gland    135   NA  Heart    28.1   522.5  Trachea    NA   NA  VirginFemale Spermatheca    189.2   NA  InseminatedFemale Spermatheca    218.4   NA  Ovary    37.6   NA  Testis    8.3   NA  Male Accessory Gland    420.4   227.05  Carcass    260.7 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    59 central nervous system, larvae L3    11 central nervous system, pupae P8    5 head, virgin 1-day female    15 head, virgin 4-day female    13 head, virgin 20-day female    14 head, mated 1-day female    12 head, mated 4-day female    9 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    17 head, mated 20-day male    16 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    6 fat body, pupae P8    19 carcass, larvae L3 wandering    34 carcass, 1-day adult    13 carcass, 4-day adult    11 carcass, 20-day adult    14 ovary, virgin 4-day female    3 ovary, mated 4-day female    2 testis, mated 4-day male    1 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (59) central nervous system, larvae L3    11 central nervous system, pupae P8    5 head, virgin 1-day female    15 head, virgin 4-day female    13 head, virgin 20-day female    14 head, mated 1-day female    12 head, mated 4-day female    9 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    17 head, mated 20-day male    16 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    6 fat body, pupae P8    19 carcass, larvae L3 wandering  (34) carcass, 1-day adult    13 carcass, 4-day adult    11 carcass, 20-day adult    14 ovary, virgin 4-day female    3 ovary, mated 4-day female    2 testis, mated 4-day male    1 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    59 central nervous system, larvae L3    11 central nervous system, pupae P8    5 head, virgin 1-day female    15 head, virgin 4-day female    13 head, virgin 20-day female    14 head, mated 1-day female    12 head, mated 4-day female    9 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    17 head, mated 20-day male    16 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    6 fat body, pupae P8    19 carcass, larvae L3 wandering    34 carcass, 1-day adult    13 carcass, 4-day adult    11 carcass, 20-day adult    14 ovary, virgin 4-day female    3 ovary, mated 4-day female    2 testis, mated 4-day male    1 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    59 central nervous system, larvae L3    11 central nervous system, pupae P8    5 head, virgin 1-day female    15 head, virgin 4-day female    13 head, virgin 20-day female    14 head, mated 1-day female    12 head, mated 4-day female    9 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    17 head, mated 20-day male    16 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    6 fat body, pupae P8    19 carcass, larvae L3 wandering    34 carcass, 1-day adult    13 carcass, 4-day adult    11 carcass, 20-day adult    14 ovary, virgin 4-day female    3 ovary, mated 4-day female    2 testis, mated 4-day male    1 accessory gland, mated 4-day male    14 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    59 central nervous system, larvae L3    11 central nervous system, pupae P8    5 head, virgin 1-day female    15 head, virgin 4-day female    13 head, virgin 20-day female    14 head, mated 1-day female    12 head, mated 4-day female    9 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    17 head, mated 20-day male    16 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    6 fat body, pupae P8    19 carcass, larvae L3 wandering    34 carcass, 1-day adult    13 carcass, 4-day adult    11 carcass, 20-day adult    14 ovary, virgin 4-day female    3 ovary, mated 4-day female    2 testis, mated 4-day male    1 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (59) central nervous system, larvae L3    11 central nervous system, pupae P8    5 head, virgin 1-day female    15 head, virgin 4-day female    13 head, virgin 20-day female    14 head, mated 1-day female    12 head, mated 4-day female    9 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    17 head, mated 20-day male    16 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    6 fat body, pupae P8    19 carcass, larvae L3 wandering  (34) carcass, 1-day adult    13 carcass, 4-day adult    11 carcass, 20-day adult    14 ovary, virgin 4-day female    3 ovary, mated 4-day female    2 testis, mated 4-day male    1 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    59 central nervous system, larvae L3    11 central nervous system, pupae P8    5 head, virgin 1-day female    15 head, virgin 4-day female    13 head, virgin 20-day female    14 head, mated 1-day female    12 head, mated 4-day female    9 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    17 head, mated 20-day male    16 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    6 fat body, pupae P8    19 carcass, larvae L3 wandering    34 carcass, 1-day adult    13 carcass, 4-day adult    11 carcass, 20-day adult    14 ovary, virgin 4-day female    3 ovary, mated 4-day female    2 testis, mated 4-day male    1 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    59 central nervous system, larvae L3    11 central nervous system, pupae P8    5 head, virgin 1-day female    15 head, virgin 4-day female    13 head, virgin 20-day female    14 head, mated 1-day female    12 head, mated 4-day female    9 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    17 head, mated 20-day male    16 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    4 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    6 fat body, pupae P8    19 carcass, larvae L3 wandering    34 carcass, 1-day adult    13 carcass, 4-day adult    11 carcass, 20-day adult    14 ovary, virgin 4-day female    3 ovary, mated 4-day female    2 testis, mated 4-day male    1 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the pupal period. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    37 embryo 04-06hr    72 embryo 06-08hr    59 embryo 08-10hr    51 embryo 10-12hr    64 embryo 12-14hr    47 embryo 14-16hr    50 embryo 16-18hr    36 embryo 18-20hr    33 embryo 20-22hr    19 embryo 22-24hr    20 larva L1    22 larva L2    27 larva L3 12hr old    17 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    21 white prepupae new    23 white prepupae 12hr    29 white prepupae 24hr    35 pupae 2d postWPP    32 pupae 3d postWPP    27 pupae 4d postWPP    36 adult male 01day    16 adult male 05day    14 adult male 30day    13 adult female 01day    15 adult female 05day    7 adult female 30day    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr  (37) embryo 04-06hr  (72) embryo 06-08hr  (59) embryo 08-10hr  (51) embryo 10-12hr  (64) embryo 12-14hr  (47) embryo 14-16hr  (50) embryo 16-18hr  (36) embryo 18-20hr  (33) embryo 20-22hr    19 embryo 22-24hr    20 larva L1    22 larva L2  (27) larva L3 12hr old    17 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    21 white prepupae new    23 white prepupae 12hr  (29) white prepupae 24hr  (35) pupae 2d postWPP  (32) pupae 3d postWPP  (27) pupae 4d postWPP  (36) adult male 01day    16 adult male 05day    14 adult male 30day    13 adult female 01day    15 adult female 05day    7 adult female 30day    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    37 embryo 04-06hr    72 embryo 06-08hr    59 embryo 08-10hr    51 embryo 10-12hr    64 embryo 12-14hr    47 embryo 14-16hr    50 embryo 16-18hr    36 embryo 18-20hr    33 embryo 20-22hr    19 embryo 22-24hr    20 larva L1    22 larva L2    27 larva L3 12hr old    17 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    21 white prepupae new    23 white prepupae 12hr    29 white prepupae 24hr    35 pupae 2d postWPP    32 pupae 3d postWPP    27 pupae 4d postWPP    36 adult male 01day    16 adult male 05day    14 adult male 30day    13 adult female 01day    15 adult female 05day    7 adult female 30day    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    37 embryo 04-06hr    72 embryo 06-08hr    59 embryo 08-10hr    51 embryo 10-12hr    64 embryo 12-14hr    47 embryo 14-16hr    50 embryo 16-18hr    36 embryo 18-20hr    33 embryo 20-22hr    19 embryo 22-24hr    20 larva L1    22 larva L2    27 larva L3 12hr old    17 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    21 white prepupae new    23 white prepupae 12hr    29 white prepupae 24hr    35 pupae 2d postWPP    32 pupae 3d postWPP    27 pupae 4d postWPP    36 adult male 01day    16 adult male 05day    14 adult male 30day    13 adult female 01day    15 adult female 05day    7 adult female 30day    7 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    37 embryo 04-06hr    72 embryo 06-08hr    59 embryo 08-10hr    51 embryo 10-12hr    64 embryo 12-14hr    47 embryo 14-16hr    50 embryo 16-18hr    36 embryo 18-20hr    33 embryo 20-22hr    19 embryo 22-24hr    20 larva L1    22 larva L2    27 larva L3 12hr old    17 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    21 white prepupae new    23 white prepupae 12hr    29 white prepupae 24hr    35 pupae 2d postWPP    32 pupae 3d postWPP    27 pupae 4d postWPP    36 adult male 01day    16 adult male 05day    14 adult male 30day    13 adult female 01day    15 adult female 05day    7 adult female 30day    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr  (37) embryo 04-06hr  (72) embryo 06-08hr  (59) embryo 08-10hr  (51) embryo 10-12hr  (64) embryo 12-14hr  (47) embryo 14-16hr  (50) embryo 16-18hr  (36) embryo 18-20hr  (33) embryo 20-22hr    19 embryo 22-24hr    20 larva L1    22 larva L2  27 larva L3 12hr old    17 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    21 white prepupae new    23 white prepupae 12hr  29 white prepupae 24hr  (35) pupae 2d postWPP  32 pupae 3d postWPP  27 pupae 4d postWPP  (36) adult male 01day    16 adult male 05day    14 adult male 30day    13 adult female 01day    15 adult female 05day    7 adult female 30day    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    37 embryo 04-06hr    72 embryo 06-08hr    59 embryo 08-10hr    51 embryo 10-12hr    64 embryo 12-14hr    47 embryo 14-16hr    50 embryo 16-18hr    36 embryo 18-20hr    33 embryo 20-22hr    19 embryo 22-24hr    20 larva L1    22 larva L2    27 larva L3 12hr old    17 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    21 white prepupae new    23 white prepupae 12hr    29 white prepupae 24hr    35 pupae 2d postWPP    32 pupae 3d postWPP    27 pupae 4d postWPP    36 adult male 01day    16 adult male 05day    14 adult male 30day    13 adult female 01day    15 adult female 05day    7 adult female 30day    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    37 embryo 04-06hr    72 embryo 06-08hr    59 embryo 08-10hr    51 embryo 10-12hr    64 embryo 12-14hr    47 embryo 14-16hr    50 embryo 16-18hr    36 embryo 18-20hr    33 embryo 20-22hr    19 embryo 22-24hr    20 larva L1    22 larva L2    27 larva L3 12hr old    17 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    21 white prepupae new    23 white prepupae 12hr    29 white prepupae 24hr    35 pupae 2d postWPP    32 pupae 3d postWPP    27 pupae 4d postWPP    36 adult male 01day    16 adult male 05day    14 adult male 30day    13 adult female 01day    15 adult female 05day    7 adult female 30day    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    5 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    5 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    5 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    5 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    1 ovary OSS    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    5 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    5 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    5 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    2 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    5 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    1 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    5 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    7 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    4 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_11 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • GM02933 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037213 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG12581-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG12581 Stages(s) 4-6 Stages(s) 9-10 Stages(s) 11-12
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele partially lethal - majority die | pupal stage, with Scer\GAL4pnr-MD237 CG12581GD10251 viable, with Scer\GAL4pnr-MD237 CG12581GD7766 Other Phenotypes Allele body color defective, with Scer\GAL4pnr-MD237 CG12581GD7766 visible, with Scer\GAL4pnr-MD237 CG12581GD7766 CG12581GD10251 Phenotype manifest in Allele chaeta | supernumerary, with Scer\GAL4pnr-MD237 CG12581GD7766 mesothoracic tergum, with Scer\GAL4pnr-MD237 CG12581GD7766 trichogen cell, with Scer\GAL4pnr-MD237 CG12581GD10251
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG12581 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG12581 Class Mutagen Stocks Known lesion CG12581GD7766 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG12581GD10251 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG12581KK111551 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes CG12581NIG.12581R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD7766} NA P{GD10251} NA P{KK111551} NA P{NIG.12581R} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG12581 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 65746 DroID - A comprehensive database of gene and protein interactions. • FBgn0037213 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40522
Orthologs
OrthoDB Orthologs (30) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6BK5PD Dipteran inclusive ortholog search EOG6PCB1C Insect inclusive ortholog search EOG673NN9 Arthropod inclusive ortholog search EOG6VHHPC Metazoa inclusive ortholog search EOG67HJHT
Orthologs in Drosophila Species (EOG6BK5PD)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG12581     Drosophila sechellia   Dsec\GM10732 Y   Drosophila erecta   Dere\GG12154 Y   Drosophila yakuba   Dyak\GE25393 Y   Drosophila ananassae   Dana\GF17687 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA11701 Y   Drosophila persimilis   Dper\GL12301 Y   Drosophila willistoni   Dwil\GK12067 Y   Drosophila virilis   Dvir\GJ23178 Y   Drosophila mojavensis   Dmoj\GI10497 Y   Drosophila grimshawi   Dgri\GH21328 Y
Orthologs in non-Drosophila Dipterans (EOG6PCB1C)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL000336   Anopheles gambiae Malaria mosquito  Agam\AGAP002200   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ011844   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ011845
Orthologs in non-Dipteran Insects (EOG673NN9)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB52876   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG009545   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH14254   Atta cephalotes Leafcutter ant  Acep\ACEP18794   Camponotus floridanus Florida carpenter ant  Cflo\CFLO22491   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL18068   Linepithema humile Argentine ant  Lhum\LH16427   Pogonomyrmex barbatus Red harvester ant  Pbar\PB19537   Solenopsis invicta Red fire ant  Sinv\SINV17710   Acyrthosiphon pisum Pea aphid  Apim\ACYPI005401   Pediculus humanus Human body louse  Phum\PHUM231560   Tribolium castaneum Red flour beetle  Tcas\GLEAN_14886
Orthologs in non-Insect Arthropods (EOG6VHHPC)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_318494   Ixodes scapularis Deer tick  Isca\ISCW007942
Orthologs in non-Arthropod Metazoa (EOG67HJHT)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\R148.5
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila sechellia Dsec\GM10732 Drosophila erecta Dere\GG12154 Drosophila yakuba Dyak\GE25393 Drosophila ananassae Dana\GF17687 Drosophila pseudoobscura pseudoobscura Dpse\GA11701 Drosophila persimilis Dper\GL12301 Drosophila willistoni Dwil\GK12067 Drosophila virilis Dvir\GJ23178 Drosophila mojavensis Dmoj\GI10497 Drosophila grimshawi Dgri\GH21328
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
VDRC	v31979 w1118; P{GD7766}v31979 v31981 w1118; P{GD7766}v31981 v21331 w1118; P{GD10251}v21331
Genomic Clones ( 1 )
	BACR15O02 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 89 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM02933
Other clones	FI04032 FI19613
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	HL03143 LP05587 LP20388 LP22545 LP23959 RE09682 RE13159 RE16090 RE16092 RE23072 RE24974 RE25935 RE34328 RE41475 RE43909 RE68830 RH26312 RH28421
Other clones	8200 17795 21166 38893 65524 70217 71087 75105 98266 101946 104381 106760 166644 174971 174973 181489 283411 283439 CK01.19C.F6 CK01.54C.G1 CK01.64A.G8 CK01.84C.F8 CK01.88A.D5 CK01.90A.C5 CK01.94A.F6 CK01.145D.C2 CK00553 CK01436 EC30660 EK044225 EK069415 EK070811 EK106517 EK119841 EK130024 EK156143 EK197914 EK199046 EK207060 EK220952 EK228716 EK229609 EK232148 EK271223 EK276247 EK276251 EK291424 EP09557 EP16738 GM12753 HL03135 RP01059 RP01108 RP01140 RP001004945 RP001004950 RP001011303 RP001016238 RP001024406 RP001026925 RP001030330 RP001030539 RP001033015 RP001039606 RP001047528 RP001047837 RP001050736 RP001051319
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0037213 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40522
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology. (Kiger et al., 2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141178 NM_164313 RefSeq (Proteins) • NP_649435 NP_730781 DDBJ / EMBL / GenBank • AA695505 AA804076 AA941257 AAF52174 AAL13357 AAL48471 AAN13329 AW941182 AW942727 AY059451 AY070849 Entrez Gene - A searchable database of RefSeq genes. • 40522 UniProtKB/TrEMBL • Q8T953 Q9VMY3 Q95TE1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Pleckstrin homology-like domain (IPR011993) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GM02933
Linkouts
	BioGRID - A database of protein and genetic interactions • 65746 DroID - A comprehensive database of gene and protein interactions. • FBgn0037213 DRSC - Results from RNAi screens. • FBgn0037213 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037213 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG12581-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0037213 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40522 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40522 modMine - Data generated by the modENCODE project. • FBgn0037213
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG12581 (Bochdanovits and de Jong, 2004, Keleman et al., 2009.8.5, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
References ( 15 )
Research paper	Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812] Bochdanovits and de Jong, 2004, Proc. Biol. Sci. 271(Suppl. 3): S75--S78 Antagonistic pleiotropy for life-history traits at the gene expression level. [FBrf0175102]
Supplementary material	Smibert et al., 2012, Cell Rep. 1(3): 277--289 Table S1: Full Lists of CNS-Extended and Testis-Shortened 3' UTRs [FBrf0219848] Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452] Kiger et al., 2003, J. Biol. 2(4): Additional data file 1: The gene identity and primer sequences for dsRNAs used in the RNAi screens. [FBrf0174231]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]
DNA/RNA sequence record	Stapleton, 2001.10.8, GenBank/EMBL/DDBJ: AY059451 Drosophila melanogaster LD25304 full length cDNA. [FBrf0140511]