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Gene Dmel\CG9775

General Information
Symbol	Dmel\CG9775	Species	D. melanogaster
Name		Annotation symbol	CG9775
Feature type	protein_coding_gene	FlyBase ID	FBgn0037261
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	82C5-82C5	Sequence location	3R:463,732..467,317 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG9775 (FBgn0037261). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: regulation of transcription, DNA-dependent. 9 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: HMG-I/HMG-Y, DNA-binding, conserved site. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval/adult salivary gland, adult female reproductive system, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval trachea, adult testis, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1630470_s_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of CG9775. Gene sequence location is 3R:463732..467317.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features HFA12330 BKN30941
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 82C5-82C5   Limits computationally determined from genome sequence between P{PZ}l(3)0273302733 and P{EP}EP974
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG9775 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG9775-RA FBtr0078894  NM_141225   1946   421 CG9775-RC FBtr0078895  NM_169012   1699   421 CG9775-RD FBtr0301297  NM_001170036   2416   315
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG9775-PA   FBpp0078534   46.1   421   12.98     NP_649482   AAF52112 CG9775-PC   FBpp0078535   46.1   421   12.98     NP_730860   AAN13285 CG9775-PD   FBpp0290512   34.2   315   13.08     NP_001163507   ACZ94806
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • HMG-I/HMG-Y, DNA-binding, conserved site (IPR000637)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA438933   AA439442   AA949037   AA951052   AE014297 AAF52112   AE014297 AAN13285   AE014297 ACZ94806   AI108315   AI133993   AI238246   AI259476   AI292782   AI292927   AI295728   AI388955   AI389395   AI514579   AI517575   AI542276   AI542295   AW940541   AY069133 AAL39278   BF486818   BF493883   BG637127   BI163039   BI163060   BI163218   BI165254   BI169410   BI169891   BI213001   BI234309   BI242058   BI353738   BI356826   BI361360   BI364533   BI368002   BI370852   BI371380   BI372292   BI374448   BI482597   BI482775   BI484911   BI486424   BI569409   BI569410   BI569944   BI570347   BI572442   BI573810   BI573811   BI573917   BI573918   BI580398   BI580885   BI584970   BI615822   BI618178   BI619923   BI624415   BI632517   BI633946   BI634955   BI635909   BI637020   BI639219   BI641424   BP549065   BP549066   BT001747 AAN71502   CK659520   CL844339   CO188347   CO266228   CO267448   CO269161   CO275835   CO285271   CO290453   CO310716   CO323587   CO329406   CO330510   CO342725   DN154359   EC071172   EC084605   EC213535   EC222795   EC223028   EC236621   EC239457   EC242265   EC243326   EC248105   EC250668   EC260523   EV593944   EV595185
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8T0Q2 Q9VN39
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0037261    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0037261 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0037261 expression level Developmental Stage   Expression Level embryo 00-02hr    6638 embryo 02-04hr    12704 embryo 04-06hr    6541 embryo 06-08hr    10402 embryo 08-10hr    7960 embryo 10-12hr    10318 embryo 12-14hr    6032 embryo 14-16hr    5362 embryo 16-18hr    4441 embryo 18-20hr    4482 embryo 20-22hr    3252 embryo 22-24hr    3116 larva L1    3112 larva L2    2506 larva L3 12hr old    2653 larva L3 puffstage 1-2    2490 larva L3 puffstage 3-6    3329 larva L3 puffstage 7-9    3786 white prepupae new    3879 white prepupae 12hr    4336 white prepupae 24hr    5437 pupae 2d postWPP    4638 pupae 3d postWPP    4120 pupae 4d postWPP    3198 adult male 01day    3375 adult male 05day    3864 adult male 30day    3109 adult female 01day    3747 adult female 05day    3737 adult female 30day    4064 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (6638) embryo 02-04hr  (12704) embryo 04-06hr  (6541) embryo 06-08hr  (10402) embryo 08-10hr  (7960) embryo 10-12hr  (10318) embryo 12-14hr  (6032) embryo 14-16hr  (5362) embryo 16-18hr  (4441) embryo 18-20hr  (4482) embryo 20-22hr  (3252) embryo 22-24hr  (3116) larva L1  (3112) larva L2  (2506) larva L3 12hr old  (2653) larva L3 puffstage 1-2  (2490) larva L3 puffstage 3-6  (3329) larva L3 puffstage 7-9  (3786) white prepupae new  (3879) white prepupae 12hr  (4336) white prepupae 24hr  (5437) pupae 2d postWPP  (4638) pupae 3d postWPP  (4120) pupae 4d postWPP  (3198) adult male 01day  (3375) adult male 05day  (3864) adult male 30day  (3109) adult female 01day  (3747) adult female 05day  (3737) adult female 30day  (4064) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (6638) embryo 02-04hr  (12704) embryo 04-06hr  (6541) embryo 06-08hr  (10402) embryo 08-10hr  (7960) embryo 10-12hr  (10318) embryo 12-14hr  (6032) embryo 14-16hr  (5362) embryo 16-18hr  (4441) embryo 18-20hr  (4482) embryo 20-22hr  (3252) embryo 22-24hr  (3116) larva L1  (3112) larva L2  (2506) larva L3 12hr old  (2653) larva L3 puffstage 1-2  (2490) larva L3 puffstage 3-6  (3329) larva L3 puffstage 7-9  (3786) white prepupae new  (3879) white prepupae 12hr  (4336) white prepupae 24hr  (5437) pupae 2d postWPP  (4638) pupae 3d postWPP  (4120) pupae 4d postWPP  (3198) adult male 01day  (3375) adult male 05day  (3864) adult male 30day  (3109) adult female 01day  (3747) adult female 05day  (3737) adult female 30day  (4064) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    6638 embryo 02-04hr  (12704) embryo 04-06hr    6541 embryo 06-08hr  10402 embryo 08-10hr    7960 embryo 10-12hr  10318 embryo 12-14hr    6032 embryo 14-16hr    5362 embryo 16-18hr    4441 embryo 18-20hr    4482 embryo 20-22hr    3252 embryo 22-24hr    3116 larva L1    3112 larva L2    2506 larva L3 12hr old    2653 larva L3 puffstage 1-2    2490 larva L3 puffstage 3-6    3329 larva L3 puffstage 7-9    3786 white prepupae new    3879 white prepupae 12hr    4336 white prepupae 24hr    5437 pupae 2d postWPP    4638 pupae 3d postWPP    4120 pupae 4d postWPP    3198 adult male 01day    3375 adult male 05day    3864 adult male 30day    3109 adult female 01day    3747 adult female 05day    3737 adult female 30day    4064 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    6638 embryo 02-04hr    12704 embryo 04-06hr    6541 embryo 06-08hr    10402 embryo 08-10hr    7960 embryo 10-12hr    10318 embryo 12-14hr    6032 embryo 14-16hr    5362 embryo 16-18hr    4441 embryo 18-20hr    4482 embryo 20-22hr    3252 embryo 22-24hr    3116 larva L1    3112 larva L2    2506 larva L3 12hr old    2653 larva L3 puffstage 1-2    2490 larva L3 puffstage 3-6    3329 larva L3 puffstage 7-9    3786 white prepupae new    3879 white prepupae 12hr    4336 white prepupae 24hr    5437 pupae 2d postWPP    4638 pupae 3d postWPP    4120 pupae 4d postWPP    3198 adult male 01day    3375 adult male 05day    3864 adult male 30day    3109 adult female 01day    3747 adult female 05day    3737 adult female 30day    4064 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0037261 expression level Developmental Stage   Expression Level embryo 00-02hr    6638 embryo 02-04hr    12704 embryo 04-06hr    6541 embryo 06-08hr    10402 embryo 08-10hr    7960 embryo 10-12hr    10318 embryo 12-14hr    6032 embryo 14-16hr    5362 embryo 16-18hr    4441 embryo 18-20hr    4482 embryo 20-22hr    3252 embryo 22-24hr    3116 larva L1    3112 larva L2    2506 larva L3 12hr old    2653 larva L3 puffstage 1-2    2490 larva L3 puffstage 3-6    3329 larva L3 puffstage 7-9    3786 white prepupae new    3879 white prepupae 12hr    4336 white prepupae 24hr    5437 pupae 2d postWPP    4638 pupae 3d postWPP    4120 pupae 4d postWPP    3198 adult male 01day    3375 adult male 05day    3864 adult male 30day    3109 adult female 01day    3747 adult female 05day    3737 adult female 30day    4064 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (6638) embryo 02-04hr  (12704) embryo 04-06hr  (6541) embryo 06-08hr  (10402) embryo 08-10hr  (7960) embryo 10-12hr  (10318) embryo 12-14hr  (6032) embryo 14-16hr  (5362) embryo 16-18hr  (4441) embryo 18-20hr  (4482) embryo 20-22hr  (3252) embryo 22-24hr  (3116) larva L1  (3112) larva L2  (2506) larva L3 12hr old  (2653) larva L3 puffstage 1-2  (2490) larva L3 puffstage 3-6  (3329) larva L3 puffstage 7-9  (3786) white prepupae new  (3879) white prepupae 12hr  (4336) white prepupae 24hr  (5437) pupae 2d postWPP  (4638) pupae 3d postWPP  (4120) pupae 4d postWPP  (3198) adult male 01day  (3375) adult male 05day  (3864) adult male 30day  (3109) adult female 01day  (3747) adult female 05day  (3737) adult female 30day  (4064) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (6638) embryo 02-04hr  (12704) embryo 04-06hr  (6541) embryo 06-08hr  (10402) embryo 08-10hr  (7960) embryo 10-12hr  (10318) embryo 12-14hr  (6032) embryo 14-16hr  (5362) embryo 16-18hr  (4441) embryo 18-20hr  (4482) embryo 20-22hr  (3252) embryo 22-24hr  (3116) larva L1  (3112) larva L2  (2506) larva L3 12hr old  (2653) larva L3 puffstage 1-2  (2490) larva L3 puffstage 3-6  (3329) larva L3 puffstage 7-9  (3786) white prepupae new  (3879) white prepupae 12hr  (4336) white prepupae 24hr  (5437) pupae 2d postWPP  (4638) pupae 3d postWPP  (4120) pupae 4d postWPP  (3198) adult male 01day  (3375) adult male 05day  (3864) adult male 30day  (3109) adult female 01day  (3747) adult female 05day  (3737) adult female 30day  (4064) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    6638 embryo 02-04hr  12704 embryo 04-06hr    6541 embryo 06-08hr  10402 embryo 08-10hr    7960 embryo 10-12hr  10318 embryo 12-14hr    6032 embryo 14-16hr    5362 embryo 16-18hr    4441 embryo 18-20hr    4482 embryo 20-22hr    3252 embryo 22-24hr    3116 larva L1    3112 larva L2    2506 larva L3 12hr old    2653 larva L3 puffstage 1-2    2490 larva L3 puffstage 3-6    3329 larva L3 puffstage 7-9    3786 white prepupae new    3879 white prepupae 12hr    4336 white prepupae 24hr    5437 pupae 2d postWPP    4638 pupae 3d postWPP    4120 pupae 4d postWPP    3198 adult male 01day    3375 adult male 05day    3864 adult male 30day    3109 adult female 01day    3747 adult female 05day    3737 adult female 30day    4064 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    6638 embryo 02-04hr    12704 embryo 04-06hr    6541 embryo 06-08hr    10402 embryo 08-10hr    7960 embryo 10-12hr    10318 embryo 12-14hr    6032 embryo 14-16hr    5362 embryo 16-18hr    4441 embryo 18-20hr    4482 embryo 20-22hr    3252 embryo 22-24hr    3116 larva L1    3112 larva L2    2506 larva L3 12hr old    2653 larva L3 puffstage 1-2    2490 larva L3 puffstage 3-6    3329 larva L3 puffstage 7-9    3786 white prepupae new    3879 white prepupae 12hr    4336 white prepupae 24hr    5437 pupae 2d postWPP    4638 pupae 3d postWPP    4120 pupae 4d postWPP    3198 adult male 01day    3375 adult male 05day    3864 adult male 30day    3109 adult female 01day    3747 adult female 05day    3737 adult female 30day    4064 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0037261    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0037261 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval/adult salivary gland, adult female reproductive system, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval trachea, adult testis, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0037261 expression level Tissue   Expression Level Larval Central Nervous System    765.975 Larval Midgut    219.5 Larval Hindgut    406.4 Larval Malpighian Tubules    460.9 Larval Fat Body    348.9 Larval Salivary Gland    733.1 Larval Trachea    432.825 Larval Carcass    414.35 Adult Head    432.9 Adult Eye    443.175 Adult Brain    1001.3 Adult Thoracic-Abdominal Ganglion    887.6 Adult Crop    619.1 Adult Midgut    265.4 Adult Hindgut    381.9 Adult Malpighian Tubules    486.7 Adult Fat Body    313.1 Adult Salivary Gland    761.2 Adult Heart    492.125 Adult VirginFemale Spermatheca    798 Adult InseminatedFemale Spermatheca    810.9 Adult Ovary    643.1 Adult Testis    195.7 Adult Male Accessory Gland    556.6 Adult Carcass    492.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (765.975) Larval Midgut    219.5 Larval Hindgut    406.4 Larval Malpighian Tubules    460.9 Larval Fat Body    348.9 Larval Salivary Gland  (733.1) Larval Trachea    432.825 Larval Carcass    414.35 Adult Head    432.9 Adult Eye    443.175 Adult Brain  (1001.3) Adult Thoracic-Abdominal Ganglion  (887.6) Adult Crop  (619.1) Adult Midgut    265.4 Adult Hindgut    381.9 Adult Malpighian Tubules    486.7 Adult Fat Body    313.1 Adult Salivary Gland  (761.2) Adult Heart    492.125 Adult VirginFemale Spermatheca  (798) Adult InseminatedFemale Spermatheca  (810.9) Adult Ovary  (643.1) Adult Testis    195.7 Adult Male Accessory Gland  (556.6) Adult Carcass    492.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    765.975 Larval Midgut    219.5 Larval Hindgut    406.4 Larval Malpighian Tubules    460.9 Larval Fat Body    348.9 Larval Salivary Gland    733.1 Larval Trachea    432.825 Larval Carcass    414.35 Adult Head    432.9 Adult Eye    443.175 Adult Brain  1001.3 Adult Thoracic-Abdominal Ganglion    887.6 Adult Crop    619.1 Adult Midgut    265.4 Adult Hindgut    381.9 Adult Malpighian Tubules    486.7 Adult Fat Body    313.1 Adult Salivary Gland    761.2 Adult Heart    492.125 Adult VirginFemale Spermatheca    798 Adult InseminatedFemale Spermatheca    810.9 Adult Ovary    643.1 Adult Testis    195.7 Adult Male Accessory Gland    556.6 Adult Carcass    492.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    765.975 Larval Midgut    219.5 Larval Hindgut    406.4 Larval Malpighian Tubules    460.9 Larval Fat Body    348.9 Larval Salivary Gland    733.1 Larval Trachea    432.825 Larval Carcass    414.35 Adult Head    432.9 Adult Eye    443.175 Adult Brain    1001.3 Adult Thoracic-Abdominal Ganglion    887.6 Adult Crop    619.1 Adult Midgut    265.4 Adult Hindgut    381.9 Adult Malpighian Tubules    486.7 Adult Fat Body    313.1 Adult Salivary Gland    761.2 Adult Heart    492.125 Adult VirginFemale Spermatheca    798 Adult InseminatedFemale Spermatheca    810.9 Adult Ovary    643.1 Adult Testis    195.7 Adult Male Accessory Gland    556.6 Adult Carcass    492.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0037261 expression level Tissue   Expression Level Larval Central Nervous System    765.975 Larval Midgut    219.5 Larval Hindgut    406.4 Larval Malpighian Tubules    460.9 Larval Fat Body    348.9 Larval Salivary Gland    733.1 Larval Trachea    432.825 Larval Carcass    414.35 Adult Head    432.9 Adult Eye    443.175 Adult Brain    1001.3 Adult Thoracic-Abdominal Ganglion    887.6 Adult Crop    619.1 Adult Midgut    265.4 Adult Hindgut    381.9 Adult Malpighian Tubules    486.7 Adult Fat Body    313.1 Adult Salivary Gland    761.2 Adult Heart    492.125 Adult VirginFemale Spermatheca    798 Adult InseminatedFemale Spermatheca    810.9 Adult Ovary    643.1 Adult Testis    195.7 Adult Male Accessory Gland    556.6 Adult Carcass    492.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  765.975 Larval Midgut    219.5 Larval Hindgut    406.4 Larval Malpighian Tubules    460.9 Larval Fat Body    348.9 Larval Salivary Gland  733.1 Larval Trachea    432.825 Larval Carcass    414.35 Adult Head    432.9 Adult Eye    443.175 Adult Brain  (1001.3) Adult Thoracic-Abdominal Ganglion  (887.6) Adult Crop  619.1 Adult Midgut    265.4 Adult Hindgut    381.9 Adult Malpighian Tubules    486.7 Adult Fat Body    313.1 Adult Salivary Gland  761.2 Adult Heart    492.125 Adult VirginFemale Spermatheca  798 Adult InseminatedFemale Spermatheca  810.9 Adult Ovary  643.1 Adult Testis    195.7 Adult Male Accessory Gland  556.6 Adult Carcass    492.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    765.975 Larval Midgut    219.5 Larval Hindgut    406.4 Larval Malpighian Tubules    460.9 Larval Fat Body    348.9 Larval Salivary Gland    733.1 Larval Trachea    432.825 Larval Carcass    414.35 Adult Head    432.9 Adult Eye    443.175 Adult Brain  1001.3 Adult Thoracic-Abdominal Ganglion    887.6 Adult Crop    619.1 Adult Midgut    265.4 Adult Hindgut    381.9 Adult Malpighian Tubules    486.7 Adult Fat Body    313.1 Adult Salivary Gland    761.2 Adult Heart    492.125 Adult VirginFemale Spermatheca    798 Adult InseminatedFemale Spermatheca    810.9 Adult Ovary    643.1 Adult Testis    195.7 Adult Male Accessory Gland    556.6 Adult Carcass    492.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    765.975 Larval Midgut    219.5 Larval Hindgut    406.4 Larval Malpighian Tubules    460.9 Larval Fat Body    348.9 Larval Salivary Gland    733.1 Larval Trachea    432.825 Larval Carcass    414.35 Adult Head    432.9 Adult Eye    443.175 Adult Brain    1001.3 Adult Thoracic-Abdominal Ganglion    887.6 Adult Crop    619.1 Adult Midgut    265.4 Adult Hindgut    381.9 Adult Malpighian Tubules    486.7 Adult Fat Body    313.1 Adult Salivary Gland    761.2 Adult Heart    492.125 Adult VirginFemale Spermatheca    798 Adult InseminatedFemale Spermatheca    810.9 Adult Ovary    643.1 Adult Testis    195.7 Adult Male Accessory Gland    556.6 Adult Carcass    492.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    432.9   NA  Eye    443.175   NA  Brain    1001.3   765.975  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    887.6   NA  Crop    619.1   219.5  Midgut    265.4   406.4  Hindgut    381.9   460.9  Malpighian Tubules    486.7   348.9  Fat Body    313.1   733.1  Salivary Gland    761.2   NA  Heart    492.125   432.825  Trachea    NA   NA  VirginFemale Spermatheca    798   NA  InseminatedFemale Spermatheca    810.9   NA  Ovary    643.1   NA  Testis    195.7   NA  Male Accessory Gland    556.6   414.35  Carcass    492.6 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_31
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037261 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9775-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG977501 Phenotype manifest in Allele
Classical Alleles ( 6 )
For All Classical Alleles Show
Allele of CG9775 Class Mutagen Stocks Known lesion CG977501 1 Yes CG9775DG30201 1 Yes CG9775EY10632 P-element activity 1 -- CG9775MI01593 1 -- CG9775A191 0 -- CG9775EY15197 0 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG9775 Class Mutagen Stocks Known lesion CG9775HMS00390 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG9775KK110941 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG9775GD14673 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD14673} NA P{KK110941} NA P{TRiP.HMS00390} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}CG9775EY10632 NA P{EPgy2}CG9775EY15197 NA miscellaneous insertions Mi{MIC}CG9775MI01593 NA P{UAST-YFP.Rab18}CG977501 NA P{wHy}CG9775DG30201 NA PBac{5HPw+}CG9775A191 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
regulation of transcription, DNA-dependent inferred from electronic annotation with InterPro:IPR000637 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG9775 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 65795 DroID - A comprehensive database of gene and protein interactions. • FBgn0037261 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40576
Orthologs
Genome-wide drosophilid orthologs	Dana\GF18351 Dere\GG11466 Dgri\GH19526 Dmoj\GI23004 Dper\GL21736 Dpse\GA22027 Dsec\GM10692 Dsim\GD19666 Dvir\GJ24596 Dwil\GK13464 Dyak\GE25342
Curated drosophilid orthologs	Dpse\GA22027
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • XP_001946356.1 Acyrthosiphon pisum (pea aphid) ENSECAP00000018397 Equus caballus (horse) ENSGALP00000022672 Gallus gallus (chicken) ENSP00000357683 Homo sapiens (human) ENSMODP00000021699 Monodelphis domestica (gray opossum) ENSMMUP00000010666 Macaca mulatta (rhesus monkey) ENSORLP00000013695 Oryzias latipes (japanese killifish) ENSPTRP00000002284 Pan troglodytes (chimpanzee) ENSRNOP00000010455 Rattus norvegicus (norway rat) ENSXETP00000034733 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0242420 FBgn0228955 FBgn0215472 FBgn0211674 FBgn0195248 FBgn0191157 FBgn0165638 FBgn0082012 FBgn0159329 FBgn0145731 FBgn0126991 FBgn0103764 FBgn0095369
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	34217 y1 w*; Mi{MIC}CG9775MI01593 21306 y1 w67c23; P{wHy}CG9775DG30201 9796 y1 w*; P{UAST-YFP.Rab18}CG977501 32396 y1 sc* v1; P{TRiP.HMS00390}attP2 20195 y1 w67c23; P{EPgy2}CG9775EY10632/TM3, Sb1 Ser1
VDRC	v108437 P{KK110941}VIE-260B
Genomic Clones ( 1 )
	BACR07E06 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 91 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH14260 RE74585
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT02253 AT21355 GH07127 GH11311 GH15772 GH15963 GH20019 GH20552 GH28581 GM24927 LD13332 LD14018 LD27779 LD31328 LD41135 LP02894 LP09441 LP17336 RE02335 RE02362 RE02561 RE05108 RE10577 RE11188 RE18296 RE29994 RE39274 RE43057 RE45542 RE49680 RE53896 RE57619 RE58258 RE59223 RE62040 RE65310 RE65524 RE68101 RE69850 RE75131 RH02149 RH02655 RH07956 RH24328 RH39936 RH45655 RH48763 RH51062 RH63969 SD08515 SD08558 SD14988 SD17445 SD18904 SD21746 SD24746 SD26318 SD28161
Other clones	37744 52795 55908 99569 101216 101344 190656 192479 214249.66 CK01.95A.B8 CK01.123A.C6 CK01.142B.C3 Dmel_neb_011134_0584_1413 Dmel_neb_012892_0586_2952 EK039260 EK074028 EK093743 EK118910 EK145501 EK150151 EK168643 EK190911 EK222337 EK224054 EK292760 EK295438 EP15410 FGM003D12 RH01483 RH09316 RH09377
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0037261 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40576
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141225 NM_169012 NM_001170036 RefSeq (Proteins) • NP_649482 NP_730860 NP_001163507 DDBJ / EMBL / GenBank • AAF52112 AAL39278 AAN13285 AAN71502 ACZ94806 AI238246 AW940541 AY069133 BI580398 BT001747 CL844339 Entrez Gene - A searchable database of RefSeq genes. • 40576 UniProtKB/TrEMBL • Q8T0Q2 Q9VN39
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • HMG-I/HMG-Y, DNA-binding, conserved site (IPR000637)
Linkouts
	BioGRID - A database of protein and genetic interactions • 65795 DroID - A comprehensive database of gene and protein interactions. • FBgn0037261 DRSC - Results from RNAi screens. • FBgn0037261 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037261 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9775-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0037261 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40576 InParanoid A subset of ortholog calls from InParanoid. • XP_001946356.1 Acyrthosiphon pisum (pea aphid) ENSECAP00000018397 Equus caballus (horse) ENSGALP00000022672 Gallus gallus (chicken) ENSP00000357683 Homo sapiens (human) ENSMODP00000021699 Monodelphis domestica (gray opossum) ENSMMUP00000010666 Macaca mulatta (rhesus monkey) ENSORLP00000013695 Oryzias latipes (japanese killifish) ENSPTRP00000002284 Pan troglodytes (chimpanzee) ENSRNOP00000010455 Rattus norvegicus (norway rat) ENSXETP00000034733 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40576 modMine - Data generated by the modENCODE project. • FBgn0037261 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0242420 FBgn0228955 FBgn0215472 FBgn0211674 FBgn0195248 FBgn0191157 FBgn0165638 FBgn0082012 FBgn0159329 FBgn0145731 FBgn0126991 FBgn0103764 FBgn0095369
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG9775 (Lafave and Sekelsky, 2011, Junell et al., 2007, Zhang et al., 2007, Keleman et al., 2009.8.5, Ni et al., 2010.12.1)
Name Synonym
Secondary FlyBase IDs
References ( 15 )
Research paper	Lafave and Sekelsky, 2011, Genetics 188(3): 749--752 Transcription Initiation From Within P Elements Generates Hypomorphic Mutations in Drosophila melanogaster. [FBrf0214251] Junell et al., 2007, Insect Biochem. Molec. Biol. 37(3): 202--212 Isolation of regulators of Drosophila immune defense genes by a double interaction screen in yeast. [FBrf0194397]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579] Zhang et al., 2007, Genetics 176(2): Supplement to Zhang et al., 2007. [FBrf0203184] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Bellen, 2011.1.31, set919.xml set919.xml [FBrf0212923] Ni et al., 2010.12.1, A genome-scale shRNA resource for transgenic RNAi in Drosophila. A genome-scale shRNA resource for transgenic RNAi in Drosophila. [FBrf0212437] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]