• Home
• Tools
  • Tools Overview
  • Query Tools

    
    • QuickSearch
    • QueryBuilder
    • TermLink
    • CytoSearch
    • Interactions Browser
    • ImageBrowse
    • Find A Person
    • Google™ FlyBase
  • Genomic/Map Tools

    
    • BLAST
    • GBrowse
    • CytoSearch
    • Aberrations Maps
    • Chromosome Maps
    • Coordinates Converter
  • Retrieve/Convert

    
    • Batch Download
    • Coordinates Converter
    • ID Converter
  • Data Submission

    
    • Fast-Track Your Paper
    • Submit Personal Comm
    • Add A New Person
    • Update Person Info
  • People

    
    • Find A Person
    • Add A New Person
    • Update Person Info
• Files
  • Files Overview
  • Downloads:
  • Precomputed files
  • Archived data
  • Releases (FTP)
  • Genomes (FTP)
  • AAA data (FTP)
  • Lists:
  • Transposons (Dmel)
  • Transposons (other)
  • Vectors & Constructs
  • Anatomical Terms
  • Map Conversion
• Species
  • Phylogeny
  • Sequenced Species
  • Synteny Table
  • Color Illustrations
  • Abbreviations
• Documents
  • About FlyBase
  • Reference Manual:
  • Sections
  • Contents
  • Nomenclature
  • Release Notes
• Resources
  • All Resources
  • Model Organisms
  • Stock Collections
  • Other links:
  • BDGP
  • DGRC
  • FlyExpress
  • Interactive Fly
  • modENCODE
  • Textpresso for Fly
• News
  • News
  • FlyBase Forum
  • FlyBase Positions
  • Meetings
  • Courses
  • Fly Board
  • White papers
  • Funding
  • bionet.dros
• Help
  • Google™ FlyBase
  • Site Map
  • FAQs
  • FlyBase Guides
  • Video Tutorials
  • Report help
  • New to Flies
  • Pers. comm.
  • Author guidelines
  • Contact FlyBase
• Archives
  • Prior Release
  • Other Archives
  • Coordinate Converter

Gene Dmel\CG1239

General Information
Symbol	Dmel\CG1239	Species	D. melanogaster
Name		Annotation symbol	CG1239
Feature type	protein_coding_gene	FlyBase ID	FBgn0037368
Gene Model Status	Current	Stock availability	1 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	83C1-83C1	Sequence location	3R:1,559,263..1,560,424 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG1239 (FBgn0037368). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: polynucleotide adenylyltransferase activity. There is experimental evidence that it is involved in the biological process: neurogenesis. 2 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has one annotated transcript and one annotated polypeptide. Protein features are: Bicoid-interacting 3; Bin3-type S-adenosyl-L-methionine binding domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1639370_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG1239. Gene sequence location is 3R:1559263..1560424.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN22596 HFA12204
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 83C1-83C1   Limits computationally determined from genome sequence between P{lacW}casj1C2 and P{PZ}lab01241
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG1239 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG1239-RA FBtr0078720  NM_141320   1023   300
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG1239-PA   FBpp0078369   34.7   300   10.11     NP_649577   AAF51965
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Bicoid-interacting 3 (IPR010675) Bin3-type S-adenosyl-L-methionine binding domain (IPR024160)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA696203   AA696205   AE014297 AAF51965   AI258197   AW943968   AY061533 AAL29081   EV581794   GH945245   GH947850   GH952206   GH953457   GH956904   GH958063   GH965783   GH966975   GH969622   GH972450   GH974807   GH975129   GH978894   GH979264   GH980954   GH983324   GH983380   GH984316
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VNH1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0037368    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0037368 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0037368 expression level Developmental Stage   Expression Level embryo 00-02hr    2850 embryo 02-04hr    721 embryo 04-06hr    1130 embryo 06-08hr    623 embryo 08-10hr    556 embryo 10-12hr    509 embryo 12-14hr    335 embryo 14-16hr    232 embryo 16-18hr    126 embryo 18-20hr    66 embryo 20-22hr    70 embryo 22-24hr    102 larva L1    424 larva L2    340 larva L3 12hr old    280 larva L3 puffstage 1-2    259 larva L3 puffstage 3-6    344 larva L3 puffstage 7-9    426 white prepupae new    291 white prepupae 12hr    440 white prepupae 24hr    489 pupae 2d postWPP    324 pupae 3d postWPP    144 pupae 4d postWPP    128 adult male 01day    203 adult male 05day    251 adult male 30day    290 adult female 01day    979 adult female 05day    2524 adult female 30day    2520 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2850) embryo 02-04hr  (721) embryo 04-06hr  (1130) embryo 06-08hr  (623) embryo 08-10hr  (556) embryo 10-12hr  (509) embryo 12-14hr  (335) embryo 14-16hr  (232) embryo 16-18hr  (126) embryo 18-20hr    66 embryo 20-22hr    70 embryo 22-24hr  102 larva L1  (424) larva L2  (340) larva L3 12hr old  (280) larva L3 puffstage 1-2  (259) larva L3 puffstage 3-6  (344) larva L3 puffstage 7-9  (426) white prepupae new  (291) white prepupae 12hr  (440) white prepupae 24hr  (489) pupae 2d postWPP  (324) pupae 3d postWPP  (144) pupae 4d postWPP  (128) adult male 01day  (203) adult male 05day  (251) adult male 30day  (290) adult female 01day  (979) adult female 05day  (2524) adult female 30day  (2520) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2850) embryo 02-04hr    721 embryo 04-06hr    1130 embryo 06-08hr    623 embryo 08-10hr    556 embryo 10-12hr    509 embryo 12-14hr    335 embryo 14-16hr    232 embryo 16-18hr    126 embryo 18-20hr    66 embryo 20-22hr    70 embryo 22-24hr    102 larva L1    424 larva L2    340 larva L3 12hr old    280 larva L3 puffstage 1-2    259 larva L3 puffstage 3-6    344 larva L3 puffstage 7-9    426 white prepupae new    291 white prepupae 12hr    440 white prepupae 24hr    489 pupae 2d postWPP    324 pupae 3d postWPP    144 pupae 4d postWPP    128 adult male 01day    203 adult male 05day    251 adult male 30day    290 adult female 01day    979 adult female 05day  (2524) adult female 30day  (2520) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2850 embryo 02-04hr    721 embryo 04-06hr    1130 embryo 06-08hr    623 embryo 08-10hr    556 embryo 10-12hr    509 embryo 12-14hr    335 embryo 14-16hr    232 embryo 16-18hr    126 embryo 18-20hr    66 embryo 20-22hr    70 embryo 22-24hr    102 larva L1    424 larva L2    340 larva L3 12hr old    280 larva L3 puffstage 1-2    259 larva L3 puffstage 3-6    344 larva L3 puffstage 7-9    426 white prepupae new    291 white prepupae 12hr    440 white prepupae 24hr    489 pupae 2d postWPP    324 pupae 3d postWPP    144 pupae 4d postWPP    128 adult male 01day    203 adult male 05day    251 adult male 30day    290 adult female 01day    979 adult female 05day    2524 adult female 30day    2520 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2850 embryo 02-04hr    721 embryo 04-06hr    1130 embryo 06-08hr    623 embryo 08-10hr    556 embryo 10-12hr    509 embryo 12-14hr    335 embryo 14-16hr    232 embryo 16-18hr    126 embryo 18-20hr    66 embryo 20-22hr    70 embryo 22-24hr    102 larva L1    424 larva L2    340 larva L3 12hr old    280 larva L3 puffstage 1-2    259 larva L3 puffstage 3-6    344 larva L3 puffstage 7-9    426 white prepupae new    291 white prepupae 12hr    440 white prepupae 24hr    489 pupae 2d postWPP    324 pupae 3d postWPP    144 pupae 4d postWPP    128 adult male 01day    203 adult male 05day    251 adult male 30day    290 adult female 01day    979 adult female 05day    2524 adult female 30day    2520 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0037368 expression level Developmental Stage   Expression Level embryo 00-02hr    2850 embryo 02-04hr    721 embryo 04-06hr    1130 embryo 06-08hr    623 embryo 08-10hr    556 embryo 10-12hr    509 embryo 12-14hr    335 embryo 14-16hr    232 embryo 16-18hr    126 embryo 18-20hr    66 embryo 20-22hr    70 embryo 22-24hr    102 larva L1    424 larva L2    340 larva L3 12hr old    280 larva L3 puffstage 1-2    259 larva L3 puffstage 3-6    344 larva L3 puffstage 7-9    426 white prepupae new    291 white prepupae 12hr    440 white prepupae 24hr    489 pupae 2d postWPP    324 pupae 3d postWPP    144 pupae 4d postWPP    128 adult male 01day    203 adult male 05day    251 adult male 30day    290 adult female 01day    979 adult female 05day    2524 adult female 30day    2520 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2850) embryo 02-04hr  (721) embryo 04-06hr  (1130) embryo 06-08hr  (623) embryo 08-10hr  (556) embryo 10-12hr  (509) embryo 12-14hr  (335) embryo 14-16hr  (232) embryo 16-18hr  126 embryo 18-20hr    66 embryo 20-22hr    70 embryo 22-24hr  102 larva L1  (424) larva L2  (340) larva L3 12hr old  (280) larva L3 puffstage 1-2  (259) larva L3 puffstage 3-6  (344) larva L3 puffstage 7-9  (426) white prepupae new  (291) white prepupae 12hr  (440) white prepupae 24hr  (489) pupae 2d postWPP  (324) pupae 3d postWPP  (144) pupae 4d postWPP  128 adult male 01day  (203) adult male 05day  (251) adult male 30day  (290) adult female 01day  (979) adult female 05day  (2524) adult female 30day  (2520) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2850) embryo 02-04hr    721 embryo 04-06hr    1130 embryo 06-08hr    623 embryo 08-10hr    556 embryo 10-12hr    509 embryo 12-14hr    335 embryo 14-16hr    232 embryo 16-18hr    126 embryo 18-20hr    66 embryo 20-22hr    70 embryo 22-24hr    102 larva L1    424 larva L2    340 larva L3 12hr old    280 larva L3 puffstage 1-2    259 larva L3 puffstage 3-6    344 larva L3 puffstage 7-9    426 white prepupae new    291 white prepupae 12hr    440 white prepupae 24hr    489 pupae 2d postWPP    324 pupae 3d postWPP    144 pupae 4d postWPP    128 adult male 01day    203 adult male 05day    251 adult male 30day    290 adult female 01day    979 adult female 05day  (2524) adult female 30day  (2520) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2850 embryo 02-04hr    721 embryo 04-06hr    1130 embryo 06-08hr    623 embryo 08-10hr    556 embryo 10-12hr    509 embryo 12-14hr    335 embryo 14-16hr    232 embryo 16-18hr    126 embryo 18-20hr    66 embryo 20-22hr    70 embryo 22-24hr    102 larva L1    424 larva L2    340 larva L3 12hr old    280 larva L3 puffstage 1-2    259 larva L3 puffstage 3-6    344 larva L3 puffstage 7-9    426 white prepupae new    291 white prepupae 12hr    440 white prepupae 24hr    489 pupae 2d postWPP    324 pupae 3d postWPP    144 pupae 4d postWPP    128 adult male 01day    203 adult male 05day    251 adult male 30day    290 adult female 01day    979 adult female 05day    2524 adult female 30day    2520 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2850 embryo 02-04hr    721 embryo 04-06hr    1130 embryo 06-08hr    623 embryo 08-10hr    556 embryo 10-12hr    509 embryo 12-14hr    335 embryo 14-16hr    232 embryo 16-18hr    126 embryo 18-20hr    66 embryo 20-22hr    70 embryo 22-24hr    102 larva L1    424 larva L2    340 larva L3 12hr old    280 larva L3 puffstage 1-2    259 larva L3 puffstage 3-6    344 larva L3 puffstage 7-9    426 white prepupae new    291 white prepupae 12hr    440 white prepupae 24hr    489 pupae 2d postWPP    324 pupae 3d postWPP    144 pupae 4d postWPP    128 adult male 01day    203 adult male 05day    251 adult male 30day    290 adult female 01day    979 adult female 05day    2524 adult female 30day    2520 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0037368    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0037368 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0037368 expression level Tissue   Expression Level Larval Central Nervous System    70.3 Larval Midgut no informative data Larval Hindgut    31.8 Larval Malpighian Tubules    34 Larval Fat Body    39.2 Larval Salivary Gland    32.4 Larval Trachea    46.075 Larval Carcass    38.925 Adult Head    35.3 Adult Eye    35.75 Adult Brain    59.4 Adult Thoracic-Abdominal Ganglion    58.2 Adult Crop    44.2 Adult Midgut    36.4 Adult Hindgut    30.3 Adult Malpighian Tubules no informative data Adult Fat Body    30.3 Adult Salivary Gland no informative data Adult Heart    21.175 Adult VirginFemale Spermatheca    35.2 Adult InseminatedFemale Spermatheca    36.3 Adult Ovary    318.4 Adult Testis    27.5 Adult Male Accessory Gland    31.1 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    70.3 Larval Midgut no informative data Larval Hindgut    31.8 Larval Malpighian Tubules    34 Larval Fat Body    39.2 Larval Salivary Gland    32.4 Larval Trachea    46.075 Larval Carcass    38.925 Adult Head    35.3 Adult Eye    35.75 Adult Brain    59.4 Adult Thoracic-Abdominal Ganglion    58.2 Adult Crop    44.2 Adult Midgut    36.4 Adult Hindgut    30.3 Adult Malpighian Tubules no informative data Adult Fat Body    30.3 Adult Salivary Gland no informative data Adult Heart    21.175 Adult VirginFemale Spermatheca    35.2 Adult InseminatedFemale Spermatheca    36.3 Adult Ovary    318.4 Adult Testis    27.5 Adult Male Accessory Gland    31.1 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    70.3 Larval Midgut no informative data Larval Hindgut    31.8 Larval Malpighian Tubules    34 Larval Fat Body    39.2 Larval Salivary Gland    32.4 Larval Trachea    46.075 Larval Carcass    38.925 Adult Head    35.3 Adult Eye    35.75 Adult Brain    59.4 Adult Thoracic-Abdominal Ganglion    58.2 Adult Crop    44.2 Adult Midgut    36.4 Adult Hindgut    30.3 Adult Malpighian Tubules no informative data Adult Fat Body    30.3 Adult Salivary Gland no informative data Adult Heart    21.175 Adult VirginFemale Spermatheca    35.2 Adult InseminatedFemale Spermatheca    36.3 Adult Ovary    318.4 Adult Testis    27.5 Adult Male Accessory Gland    31.1 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    70.3 Larval Midgut no informative data Larval Hindgut    31.8 Larval Malpighian Tubules    34 Larval Fat Body    39.2 Larval Salivary Gland    32.4 Larval Trachea    46.075 Larval Carcass    38.925 Adult Head    35.3 Adult Eye    35.75 Adult Brain    59.4 Adult Thoracic-Abdominal Ganglion    58.2 Adult Crop    44.2 Adult Midgut    36.4 Adult Hindgut    30.3 Adult Malpighian Tubules no informative data Adult Fat Body    30.3 Adult Salivary Gland no informative data Adult Heart    21.175 Adult VirginFemale Spermatheca    35.2 Adult InseminatedFemale Spermatheca    36.3 Adult Ovary    318.4 Adult Testis    27.5 Adult Male Accessory Gland    31.1 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0037368 expression level Tissue   Expression Level Larval Central Nervous System    70.3 Larval Midgut no informative data Larval Hindgut    31.8 Larval Malpighian Tubules    34 Larval Fat Body    39.2 Larval Salivary Gland    32.4 Larval Trachea    46.075 Larval Carcass    38.925 Adult Head    35.3 Adult Eye    35.75 Adult Brain    59.4 Adult Thoracic-Abdominal Ganglion    58.2 Adult Crop    44.2 Adult Midgut    36.4 Adult Hindgut    30.3 Adult Malpighian Tubules no informative data Adult Fat Body    30.3 Adult Salivary Gland no informative data Adult Heart    21.175 Adult VirginFemale Spermatheca    35.2 Adult InseminatedFemale Spermatheca    36.3 Adult Ovary    318.4 Adult Testis    27.5 Adult Male Accessory Gland    31.1 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    70.3 Larval Midgut no informative data Larval Hindgut    31.8 Larval Malpighian Tubules    34 Larval Fat Body    39.2 Larval Salivary Gland    32.4 Larval Trachea    46.075 Larval Carcass    38.925 Adult Head    35.3 Adult Eye    35.75 Adult Brain    59.4 Adult Thoracic-Abdominal Ganglion    58.2 Adult Crop    44.2 Adult Midgut    36.4 Adult Hindgut    30.3 Adult Malpighian Tubules no informative data Adult Fat Body    30.3 Adult Salivary Gland no informative data Adult Heart    21.175 Adult VirginFemale Spermatheca    35.2 Adult InseminatedFemale Spermatheca    36.3 Adult Ovary    318.4 Adult Testis    27.5 Adult Male Accessory Gland    31.1 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    70.3 Larval Midgut no informative data Larval Hindgut    31.8 Larval Malpighian Tubules    34 Larval Fat Body    39.2 Larval Salivary Gland    32.4 Larval Trachea    46.075 Larval Carcass    38.925 Adult Head    35.3 Adult Eye    35.75 Adult Brain    59.4 Adult Thoracic-Abdominal Ganglion    58.2 Adult Crop    44.2 Adult Midgut    36.4 Adult Hindgut    30.3 Adult Malpighian Tubules no informative data Adult Fat Body    30.3 Adult Salivary Gland no informative data Adult Heart    21.175 Adult VirginFemale Spermatheca    35.2 Adult InseminatedFemale Spermatheca    36.3 Adult Ovary    318.4 Adult Testis    27.5 Adult Male Accessory Gland    31.1 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    70.3 Larval Midgut no informative data Larval Hindgut    31.8 Larval Malpighian Tubules    34 Larval Fat Body    39.2 Larval Salivary Gland    32.4 Larval Trachea    46.075 Larval Carcass    38.925 Adult Head    35.3 Adult Eye    35.75 Adult Brain    59.4 Adult Thoracic-Abdominal Ganglion    58.2 Adult Crop    44.2 Adult Midgut    36.4 Adult Hindgut    30.3 Adult Malpighian Tubules no informative data Adult Fat Body    30.3 Adult Salivary Gland no informative data Adult Heart    21.175 Adult VirginFemale Spermatheca    35.2 Adult InseminatedFemale Spermatheca    36.3 Adult Ovary    318.4 Adult Testis    27.5 Adult Male Accessory Gland    31.1 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut no informative data Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules no informative data Adult Fat Body     Adult Salivary Gland no informative data Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass no informative data FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    35.3   NA  Eye    35.75   NA  Brain    59.4   70.3  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    58.2   NA  Crop    44.2   no informative data  Midgut    36.4   31.8  Hindgut    30.3   34  Malpighian Tubules    no informative data   39.2  Fat Body    30.3   32.4  Salivary Gland    no informative data   NA  Heart    21.175   46.075  Trachea    NA   NA  VirginFemale Spermatheca    35.2   NA  InseminatedFemale Spermatheca    36.3   NA  Ovary    318.4   NA  Testis    27.5   NA  Male Accessory Gland    31.1   38.925  Carcass    no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_13
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037368 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1239-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL41407 CG1239GD7710 semi-lethal | pupal stage, with Scer\GAL4pnr-MD237 CG1239GD7710 Other Phenotypes Allele neuroanatomy defective | larval stage, with Scer\GAL41407 CG1239GD7710 visible, with Scer\GAL4pnr-MD237 CG1239GD7710 Phenotype manifest in Allele ganglion mother cell | larval stage, with Scer\GAL41407 CG1239GD7710 mesothoracic tergum, with Scer\GAL4pnr-MD237 CG1239GD7710
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG1239 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG1239 Class Mutagen Stocks Known lesion CG1239GD7710 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG1239KK102515 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6145 (Ryder, 2004.4.26) Df(3R)Exel7283 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD7710} NA P{KK102515} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
	There is no information supporting a cellular component term for this gene. (Based on a review of available data on: 2007-06-08)
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
methyltransferase activity inferred from electronic annotation with InterPro:IPR010675, InterPro:IPR024160 (FlyBase Curators et al., 2004-) polynucleotide adenylyltransferase activity inferred from sequence or structural similarity with UniProtKB:Q9ZEC8 (FlyBase, 1992-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG1239 allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0037368 DroID - A comprehensive database of gene and protein interactions. • FBgn0037368
Orthologs
Genome-wide drosophilid orthologs	Dana\GF16344 Dere\GG13000 Dgri\GH17289 Dmoj\GI23870 Dper\GL24517 Dpse\GA11602 Dsec\GM10834 Dsim\GD19815 Dvir\GJ23960 Dwil\GK13208 Dyak\GE10158
Curated drosophilid orthologs	Dpse\GA11602
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL006787-PA Aedes aegypti (mosquito) AGAP003278-PA Anopheles gambiae (mosquito) At5g51130.1 Arabidopsis thaliana (wall cress) 5193 Batrachochytrium dendrobatidis (chytrid fungus) CBP36631 Caenorhabditis briggsae (nematode) CE19053 Caenorhabditis elegans (worm) JA16087 Caenorhabditis japonica (nematode) CPIJ001408 Culex pipens (mosquito) 194190 Chlamidomonas reinhardtii (green alga) 91785 Capitella spl (polychaete worm) DDB0189672 Dictyostelium discoideum (amoeba) 63026 Daphnia pulex (daphnia) ENSGACP00000027374 Gymnopilus aculeatus (mushroom) 110926 Hypsipyla robusta (cedar shoot borer) 109009 Lottia gigantea (owl limpet) 120055 Nematostella vectensis (starlet anemone) LOC_Os08g42760.1 Oryza sativa (asian rice) 11520 Ostreococcus tauri (green alga) PF11_0468 Plasmodium falciparum (protozoal parasite) PHUM002322-PA Pediculus humanus (human body louse) 165914 Physcomitrella patens (moss) 75655 Phytophthora ramorum (sudden oak death pathogen) 138148 Phytophthora sojae (root rot pathogen) 261963 Populus trichocarpa (black cottonwood) 4753716 Sorghum bicolor (sorghum) SPBC2A9.10 Schizosaccharomyces pombe (fission yeast) 19869 Trichoplax adhaerens (metazoa) 3828.m01265 Tetrahymena thermophila (ciliate protozoa) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV12266 LH10647 ISCW017656 FBgn0238080 FBgn0228038 FBgn0221496 FBgn0215217 FBgn0211047 FBgn0208577 FBgn0191304 FBgn0182174 FBgn0171456 FBgn0165780 JGI_V11_63026 FBgn0247494 FBgn0080937 FBgn0071653 FBgn0162106 FBgn0157932 FBgn0146595 FBgn0141113 FBgn0033073 FBgn0128400 FBgn0124759 FBgn0115352 FBgn0105273 FBgn0093365 FBgn0088091 CPIJ001408 CPIJ006467 CPIJ000796 BGIBMGA006788 ACYPI007187 ACYPI005309 GB19034 AGAP012087 AGAP003278 AAEL006787 AAEL003540 PB24285 PHUM045180 GLEAN_11992
Stocks & Reagents
Stocks Listed in FlyBase ( 1 )
VDRC	v17100 w1118; P{GD7710}v17100
Genomic Clones ( 2 )
	BACR02L23 BACR03P13 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 23 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LP01332
Other clones	DPiM_LP01332
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GM05269 GM05271
Other clones	Dmel_dig_018562_0610_0865 RP004044192 RP004069699 RP004130291 RP004147462 RP004198953 RP004204528 RP004210887 RP004211591 RP004232689 RP004235984 RP004252046 RP004255419 RP004349339 RP004355592 RP004397689 RP004438507 RP004473154 RP004487609
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0037368 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40706
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141320 RefSeq (Proteins) • NP_649577 DDBJ / EMBL / GenBank • AAF51965 AAL29081 AI258197 AW943968 AY061533 Entrez Gene - A searchable database of RefSeq genes. • 40706 UniProtKB/TrEMBL • Q9VNH1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Bicoid-interacting 3 (IPR010675) Bin3-type S-adenosyl-L-methionine binding domain (IPR024160)
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0037368 DroID - A comprehensive database of gene and protein interactions. • FBgn0037368 DRSC - Results from RNAi screens. • FBgn0037368 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037368 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1239-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0037368 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40706 InParanoid A subset of ortholog calls from InParanoid. • AAEL006787-PA Aedes aegypti (mosquito) AGAP003278-PA Anopheles gambiae (mosquito) At5g51130.1 Arabidopsis thaliana (wall cress) 5193 Batrachochytrium dendrobatidis (chytrid fungus) CBP36631 Caenorhabditis briggsae (nematode) CE19053 Caenorhabditis elegans (worm) JA16087 Caenorhabditis japonica (nematode) CPIJ001408 Culex pipens (mosquito) 194190 Chlamidomonas reinhardtii (green alga) 91785 Capitella spl (polychaete worm) DDB0189672 Dictyostelium discoideum (amoeba) 63026 Daphnia pulex (daphnia) ENSGACP00000027374 Gymnopilus aculeatus (mushroom) 110926 Hypsipyla robusta (cedar shoot borer) 109009 Lottia gigantea (owl limpet) 120055 Nematostella vectensis (starlet anemone) LOC_Os08g42760.1 Oryza sativa (asian rice) 11520 Ostreococcus tauri (green alga) PF11_0468 Plasmodium falciparum (protozoal parasite) PHUM002322-PA Pediculus humanus (human body louse) 165914 Physcomitrella patens (moss) 75655 Phytophthora ramorum (sudden oak death pathogen) 138148 Phytophthora sojae (root rot pathogen) 261963 Populus trichocarpa (black cottonwood) 4753716 Sorghum bicolor (sorghum) SPBC2A9.10 Schizosaccharomyces pombe (fission yeast) 19869 Trichoplax adhaerens (metazoa) 3828.m01265 Tetrahymena thermophila (ciliate protozoa) modMine - Data generated by the modENCODE project. • FBgn0037368 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV12266 LH10647 ISCW017656 FBgn0238080 FBgn0228038 FBgn0221496 FBgn0215217 FBgn0211047 FBgn0208577 FBgn0191304 FBgn0182174 FBgn0171456 FBgn0165780 JGI_V11_63026 FBgn0247494 FBgn0080937 FBgn0071653 FBgn0162106 FBgn0157932 FBgn0146595 FBgn0141113 FBgn0033073 FBgn0128400 FBgn0124759 FBgn0115352 FBgn0105273 FBgn0093365 FBgn0088091 CPIJ001408 CPIJ006467 CPIJ000796 BGIBMGA006788 ACYPI007187 ACYPI005309 GB19034 AGAP012087 AGAP003278 AAEL006787 AAEL003540 PB24285 PHUM045180 GLEAN_11992
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	cg1239 (Herold et al., 2003) CG1239 (Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
References ( 13 )
Research paper	Herold et al., 2003, EMBO J. 22(10): 2472--2483 Genome-wide analysis of nuclear mRNA export pathways in Drosophila. [FBrf0158900]
Supplementary material	Neumüller et al., 2011, Cell Stem Cell 8(5): Supplemental Table S1. [FBrf0214431] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]