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Gene Dmel\CG1965

General Information
Symbol	Dmel\CG1965	Species	D. melanogaster
Name		Annotation symbol	CG1965
Feature type	protein_coding_gene	FlyBase ID	FBgn0037466
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	84B2-84B2	Sequence location	3R:2,893,123..2,897,346 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG1965 (FBgn0037466). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: DNA binding. It is reported to be involved in the biological process: mRNA splicing, via spliceosome. 3 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: GC-rich sequence DNA-binding factor; GC-rich sequence DNA-binding factor domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages, at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult midgut, adult hindgut, larval/adult Malpighian tubules, larval fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1627693_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG1965. Gene sequence location is 3R:2893123..2897346.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 84B2-84B2   Limits computationally determined from genome sequence between P{PZ}pb04498 and P{lacW}l(3)L2100L2100
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG1965 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47 DGC clone GH04034 appears problematic: unspliced intron
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG1965-RA FBtr0081634  NM_141432   3127   905 CG1965-RB FBtr0305315  NM_001260027   3223   317 CG1965-RC FBtr0334667  NM_001275396   3132   176
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG1965-PA   FBpp0081148   102.6   905   6.43     NP_649689   AAF54074 CG1965-PB   FBpp0293858   35.7   317   5.75     NP_001246956   AFH06275 CG1965-PC   FBpp0306728   19.6   176   9.75     NP_001262325   AGB95708
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • GC-rich sequence DNA-binding factor (IPR012890) GC-rich sequence DNA-binding factor domain (IPR022783)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA246371   AA264735   AA441475   AA538750   AE014297 AAF54074   AE014297 AFH06275   AE014297 AGB95708   AI062990   AI063917   AI109539   AI294057   AW940154   AY119467 AAM50121   BI172023   BI227646   BI229240   BI229563   BI487113   BI487139   BP548721   BP548722   BT023777   CK659350   CO188419   CO266993   CO272578   CO279778   CO304124   CO308392   CO310133   CO328885   EC057372   EC061632   EC064631   EC220697   EC221111   EC232800   EC233224
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VI54 Q8MRQ8
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
catalytic step 2 spliceosome inferred from direct assay (Herold et al., 2009) precatalytic spliceosome inferred from direct assay (Herold et al., 2009)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult midgut, adult hindgut, larval/adult Malpighian tubules, larval fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    243.375 Larval Midgut    85.8 Larval Hindgut    93.8 Larval Malpighian Tubules    130 Larval Fat Body    152.9 Larval Salivary Gland    116.3 Larval Trachea    101.075 Larval Carcass    105.825 Adult Head    108.2 Adult Eye    100.425 Adult Brain    405.6 Adult Thoracic-Abdominal Ganglion    279.6 Adult Crop    135.7 Adult Midgut    135.5 Adult Hindgut    121 Adult Malpighian Tubules    107.3 Adult Fat Body    92.4 Adult Salivary Gland    109.6 Adult Heart    67.425 Adult VirginFemale Spermatheca    105 Adult InseminatedFemale Spermatheca    99.6 Adult Ovary    212.9 Adult Testis    41.2 Adult Male Accessory Gland    167.7 Adult Carcass    111 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    243.375 Larval Midgut    85.8 Larval Hindgut    93.8 Larval Malpighian Tubules    130 Larval Fat Body    152.9 Larval Salivary Gland    116.3 Larval Trachea    101.075 Larval Carcass    105.825 Adult Head    108.2 Adult Eye    100.425 Adult Brain    405.6 Adult Thoracic-Abdominal Ganglion    279.6 Adult Crop    135.7 Adult Midgut    135.5 Adult Hindgut    121 Adult Malpighian Tubules    107.3 Adult Fat Body    92.4 Adult Salivary Gland    109.6 Adult Heart    67.425 Adult VirginFemale Spermatheca    105 Adult InseminatedFemale Spermatheca    99.6 Adult Ovary    212.9 Adult Testis    41.2 Adult Male Accessory Gland    167.7 Adult Carcass    111 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    243.375 Larval Midgut    85.8 Larval Hindgut    93.8 Larval Malpighian Tubules    130 Larval Fat Body    152.9 Larval Salivary Gland    116.3 Larval Trachea    101.075 Larval Carcass    105.825 Adult Head    108.2 Adult Eye    100.425 Adult Brain    405.6 Adult Thoracic-Abdominal Ganglion    279.6 Adult Crop    135.7 Adult Midgut    135.5 Adult Hindgut    121 Adult Malpighian Tubules    107.3 Adult Fat Body    92.4 Adult Salivary Gland    109.6 Adult Heart    67.425 Adult VirginFemale Spermatheca    105 Adult InseminatedFemale Spermatheca    99.6 Adult Ovary    212.9 Adult Testis    41.2 Adult Male Accessory Gland    167.7 Adult Carcass    111 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    243.375 Larval Midgut    85.8 Larval Hindgut    93.8 Larval Malpighian Tubules    130 Larval Fat Body    152.9 Larval Salivary Gland    116.3 Larval Trachea    101.075 Larval Carcass    105.825 Adult Head    108.2 Adult Eye    100.425 Adult Brain    405.6 Adult Thoracic-Abdominal Ganglion    279.6 Adult Crop    135.7 Adult Midgut    135.5 Adult Hindgut    121 Adult Malpighian Tubules    107.3 Adult Fat Body    92.4 Adult Salivary Gland    109.6 Adult Heart    67.425 Adult VirginFemale Spermatheca    105 Adult InseminatedFemale Spermatheca    99.6 Adult Ovary    212.9 Adult Testis    41.2 Adult Male Accessory Gland    167.7 Adult Carcass    111 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    243.375 Larval Midgut    85.8 Larval Hindgut    93.8 Larval Malpighian Tubules    130 Larval Fat Body    152.9 Larval Salivary Gland    116.3 Larval Trachea    101.075 Larval Carcass    105.825 Adult Head    108.2 Adult Eye    100.425 Adult Brain    405.6 Adult Thoracic-Abdominal Ganglion    279.6 Adult Crop    135.7 Adult Midgut    135.5 Adult Hindgut    121 Adult Malpighian Tubules    107.3 Adult Fat Body    92.4 Adult Salivary Gland    109.6 Adult Heart    67.425 Adult VirginFemale Spermatheca    105 Adult InseminatedFemale Spermatheca    99.6 Adult Ovary    212.9 Adult Testis    41.2 Adult Male Accessory Gland    167.7 Adult Carcass    111 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    243.375 Larval Midgut    85.8 Larval Hindgut    93.8 Larval Malpighian Tubules    130 Larval Fat Body    152.9 Larval Salivary Gland    116.3 Larval Trachea    101.075 Larval Carcass    105.825 Adult Head    108.2 Adult Eye    100.425 Adult Brain    405.6 Adult Thoracic-Abdominal Ganglion    279.6 Adult Crop    135.7 Adult Midgut    135.5 Adult Hindgut    121 Adult Malpighian Tubules    107.3 Adult Fat Body    92.4 Adult Salivary Gland    109.6 Adult Heart    67.425 Adult VirginFemale Spermatheca    105 Adult InseminatedFemale Spermatheca    99.6 Adult Ovary    212.9 Adult Testis    41.2 Adult Male Accessory Gland    167.7 Adult Carcass    111 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    243.375 Larval Midgut    85.8 Larval Hindgut    93.8 Larval Malpighian Tubules    130 Larval Fat Body    152.9 Larval Salivary Gland    116.3 Larval Trachea    101.075 Larval Carcass    105.825 Adult Head    108.2 Adult Eye    100.425 Adult Brain    405.6 Adult Thoracic-Abdominal Ganglion    279.6 Adult Crop    135.7 Adult Midgut    135.5 Adult Hindgut    121 Adult Malpighian Tubules    107.3 Adult Fat Body    92.4 Adult Salivary Gland    109.6 Adult Heart    67.425 Adult VirginFemale Spermatheca    105 Adult InseminatedFemale Spermatheca    99.6 Adult Ovary    212.9 Adult Testis    41.2 Adult Male Accessory Gland    167.7 Adult Carcass    111 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    243.375 Larval Midgut    85.8 Larval Hindgut    93.8 Larval Malpighian Tubules    130 Larval Fat Body    152.9 Larval Salivary Gland    116.3 Larval Trachea    101.075 Larval Carcass    105.825 Adult Head    108.2 Adult Eye    100.425 Adult Brain    405.6 Adult Thoracic-Abdominal Ganglion    279.6 Adult Crop    135.7 Adult Midgut    135.5 Adult Hindgut    121 Adult Malpighian Tubules    107.3 Adult Fat Body    92.4 Adult Salivary Gland    109.6 Adult Heart    67.425 Adult VirginFemale Spermatheca    105 Adult InseminatedFemale Spermatheca    99.6 Adult Ovary    212.9 Adult Testis    41.2 Adult Male Accessory Gland    167.7 Adult Carcass    111 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    108.2   NA  Eye    100.425   NA  Brain    405.6   243.375  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    279.6   NA  Crop    135.7   85.8  Midgut    135.5   93.8  Hindgut    121   130  Malpighian Tubules    107.3   152.9  Fat Body    92.4   116.3  Salivary Gland    109.6   NA  Heart    67.425   101.075  Trachea    NA   NA  VirginFemale Spermatheca    105   NA  InseminatedFemale Spermatheca    99.6   NA  Ovary    212.9   NA  Testis    41.2   NA  Male Accessory Gland    167.7   105.825  Carcass    111 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    22 central nervous system, pupae P8    20 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    10 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    7 head, mated 1-day male    14 head, mated 4-day male    19 head, mated 20-day male    19 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    8 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    4 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    22 central nervous system, pupae P8    20 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    10 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    7 head, mated 1-day male    14 head, mated 4-day male    19 head, mated 20-day male    19 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    8 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    4 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    22 central nervous system, pupae P8    20 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    10 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    7 head, mated 1-day male    14 head, mated 4-day male    19 head, mated 20-day male    19 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    8 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    4 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    22 central nervous system, pupae P8    20 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    10 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    7 head, mated 1-day male    14 head, mated 4-day male    19 head, mated 20-day male    19 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    8 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    4 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    22 central nervous system, pupae P8    20 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    10 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    7 head, mated 1-day male    14 head, mated 4-day male    19 head, mated 20-day male    19 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    8 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    4 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    22 central nervous system, pupae P8    20 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    10 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    7 head, mated 1-day male    14 head, mated 4-day male    19 head, mated 20-day male    19 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    8 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    4 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    22 central nervous system, pupae P8    20 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    10 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    7 head, mated 1-day male    14 head, mated 4-day male    19 head, mated 20-day male    19 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    8 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    4 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    22 central nervous system, pupae P8    20 head, virgin 1-day female    11 head, virgin 4-day female    12 head, virgin 20-day female    10 head, mated 1-day female    11 head, mated 4-day female    11 head, mated 20-day female    7 head, mated 1-day male    14 head, mated 4-day male    19 head, mated 20-day male    19 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    3 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    8 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    4 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male    2 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages, at stages throughout the pupal period. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr    19 embryo 04-06hr    20 embryo 06-08hr    18 embryo 08-10hr    17 embryo 10-12hr    12 embryo 12-14hr    13 embryo 14-16hr    10 embryo 16-18hr    10 embryo 18-20hr    6 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    9 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    17 white prepupae new    17 white prepupae 12hr    21 white prepupae 24hr    30 pupae 2d postWPP    24 pupae 3d postWPP    11 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    9 adult male 30day    8 adult female 01day    9 adult female 05day    14 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr    19 embryo 04-06hr    20 embryo 06-08hr    18 embryo 08-10hr    17 embryo 10-12hr    12 embryo 12-14hr    13 embryo 14-16hr    10 embryo 16-18hr    10 embryo 18-20hr    6 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    9 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    17 white prepupae new    17 white prepupae 12hr    21 white prepupae 24hr  (30) pupae 2d postWPP    24 pupae 3d postWPP    11 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    9 adult male 30day    8 adult female 01day    9 adult female 05day    14 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr    19 embryo 04-06hr    20 embryo 06-08hr    18 embryo 08-10hr    17 embryo 10-12hr    12 embryo 12-14hr    13 embryo 14-16hr    10 embryo 16-18hr    10 embryo 18-20hr    6 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    9 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    17 white prepupae new    17 white prepupae 12hr    21 white prepupae 24hr    30 pupae 2d postWPP    24 pupae 3d postWPP    11 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    9 adult male 30day    8 adult female 01day    9 adult female 05day    14 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr    19 embryo 04-06hr    20 embryo 06-08hr    18 embryo 08-10hr    17 embryo 10-12hr    12 embryo 12-14hr    13 embryo 14-16hr    10 embryo 16-18hr    10 embryo 18-20hr    6 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    9 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    17 white prepupae new    17 white prepupae 12hr    21 white prepupae 24hr    30 pupae 2d postWPP    24 pupae 3d postWPP    11 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    9 adult male 30day    8 adult female 01day    9 adult female 05day    14 adult female 30day    13 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr    19 embryo 04-06hr    20 embryo 06-08hr    18 embryo 08-10hr    17 embryo 10-12hr    12 embryo 12-14hr    13 embryo 14-16hr    10 embryo 16-18hr    10 embryo 18-20hr    6 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    9 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    17 white prepupae new    17 white prepupae 12hr    21 white prepupae 24hr    30 pupae 2d postWPP    24 pupae 3d postWPP    11 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    9 adult male 30day    8 adult female 01day    9 adult female 05day    14 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr    19 embryo 04-06hr    20 embryo 06-08hr    18 embryo 08-10hr    17 embryo 10-12hr    12 embryo 12-14hr    13 embryo 14-16hr    10 embryo 16-18hr    10 embryo 18-20hr    6 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    9 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    17 white prepupae new    17 white prepupae 12hr    21 white prepupae 24hr  30 pupae 2d postWPP    24 pupae 3d postWPP    11 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    9 adult male 30day    8 adult female 01day    9 adult female 05day    14 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr    19 embryo 04-06hr    20 embryo 06-08hr    18 embryo 08-10hr    17 embryo 10-12hr    12 embryo 12-14hr    13 embryo 14-16hr    10 embryo 16-18hr    10 embryo 18-20hr    6 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    9 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    17 white prepupae new    17 white prepupae 12hr    21 white prepupae 24hr    30 pupae 2d postWPP    24 pupae 3d postWPP    11 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    9 adult male 30day    8 adult female 01day    9 adult female 05day    14 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr    19 embryo 04-06hr    20 embryo 06-08hr    18 embryo 08-10hr    17 embryo 10-12hr    12 embryo 12-14hr    13 embryo 14-16hr    10 embryo 16-18hr    10 embryo 18-20hr    6 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    9 larva L2    8 larva L3 12hr old    6 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    17 white prepupae new    17 white prepupae 12hr    21 white prepupae 24hr    30 pupae 2d postWPP    24 pupae 3d postWPP    11 pupae 4d postWPP    5 adult male 01day    8 adult male 05day    9 adult male 30day    8 adult female 01day    9 adult female 05day    14 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    9 embryonic 1182-4H    13 embryonic GM2    12 embryonic Kc167    10 embryonic S1    13 embryonic S3    11 leg disc CME L1    12 wing disc CME-W2    10 wing disc ML-DmD8    13 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    15 antennal disc ML-DmD20-c5    9 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    17 ovary OSC    12 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    9 embryonic 1182-4H    13 embryonic GM2    12 embryonic Kc167    10 embryonic S1    13 embryonic S3    11 leg disc CME L1    12 wing disc CME-W2    10 wing disc ML-DmD8    13 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    15 antennal disc ML-DmD20-c5    9 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    17 ovary OSC    12 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    9 embryonic 1182-4H    13 embryonic GM2    12 embryonic Kc167    10 embryonic S1    13 embryonic S3    11 leg disc CME L1    12 wing disc CME-W2    10 wing disc ML-DmD8    13 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    15 antennal disc ML-DmD20-c5    9 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    17 ovary OSC    12 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    9 embryonic 1182-4H    13 embryonic GM2    12 embryonic Kc167    10 embryonic S1    13 embryonic S3    11 leg disc CME L1    12 wing disc CME-W2    10 wing disc ML-DmD8    13 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    15 antennal disc ML-DmD20-c5    9 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    17 ovary OSC    12 ovary OSS    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    9 embryonic 1182-4H    13 embryonic GM2    12 embryonic Kc167    10 embryonic S1    13 embryonic S3    11 leg disc CME L1    12 wing disc CME-W2    10 wing disc ML-DmD8    13 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    15 antennal disc ML-DmD20-c5    9 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    17 ovary OSC    12 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    9 embryonic 1182-4H    13 embryonic GM2    12 embryonic Kc167    10 embryonic S1    13 embryonic S3    11 leg disc CME L1    12 wing disc CME-W2    10 wing disc ML-DmD8    13 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    15 antennal disc ML-DmD20-c5    9 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    17 ovary OSC    12 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    9 embryonic 1182-4H    13 embryonic GM2    12 embryonic Kc167    10 embryonic S1    13 embryonic S3    11 leg disc CME L1    12 wing disc CME-W2    10 wing disc ML-DmD8    13 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    15 antennal disc ML-DmD20-c5    9 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    17 ovary OSC    12 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    9 embryonic 1182-4H    13 embryonic GM2    12 embryonic Kc167    10 embryonic S1    13 embryonic S3    11 leg disc CME L1    12 wing disc CME-W2    10 wing disc ML-DmD8    13 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    13 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    15 antennal disc ML-DmD20-c5    9 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    17 ovary OSC    12 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    11 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    11 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    11 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    11 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    11 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    11 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    11 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    7 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    11 Paraquat 10 mM 48 hrs, 4-day adult    9 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_23 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037466 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1965-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL4pnr-MD237 CG1965GD4423 lethal | pupal stage, with Scer\GAL4pnr-MD237 CG1965GD4423 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG1965 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG1965 Class Mutagen Stocks Known lesion CG1965GD4423 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG1965KK100944 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes CG1965NIG.1965R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4423} NA P{KK100944} NA P{NIG.1965R} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
catalytic step 2 spliceosome inferred from direct assay (Herold et al., 2009) precatalytic spliceosome inferred from direct assay (Herold et al., 2009)
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
DNA binding inferred from sequence or structural similarity with EMBL:AC005034 (FlyBase, 1992-) sequence-specific DNA binding transcription factor activity inferred from electronic annotation with InterPro:IPR012890 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
mRNA splicing, via spliceosome inferred by curator from GO:0071011|GO:0071013 (Herold et al., 2009) regulation of transcription, DNA-dependent inferred from electronic annotation with InterPro:IPR012890, InterPro:IPR022783 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG1965 - Bx42 experimental knowledge based (Guruharsha et al., 2011) CG1965 - CG11808 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1965 - CG14641 experimental knowledge based (Guruharsha et al., 2011) CG1965 - CG17187 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1965 - CG3436 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1965 - CG4849 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) CG1965 - CG6674 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1965 - Hsp23 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1965 - PHGPx anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1965 - Plod anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1965 - Prp8 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) CG1965 - REG anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1965 - Rbp1-like anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1965 - SmG anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1965 - btz anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1965 - ctp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1965 - ecd experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) CG1965 - l(1)10Bb experimental knowledge based (Guruharsha et al., 2011) CG1965 - l(3)72Ab experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) CG1965 - mRpS28 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1965 - msd5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1965 - sip1 experimental knowledge based (Guruharsha et al., 2011) CG1965 - snf anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG1965 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 66040 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0037466 DroID - A comprehensive database of gene and protein interactions. • FBgn0037466 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40842
Orthologs
OrthoDB Orthologs (79) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG679FSH Dipteran inclusive ortholog search EOG67WNWR Insect inclusive ortholog search EOG6XKT32 Arthropod inclusive ortholog search EOG6ZS7J6 Metazoa inclusive ortholog search EOG6R873M
Orthologs in Drosophila Species (EOG679FSH)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG1965     Drosophila simulans   Dsim\GD19906 Y   Drosophila sechellia   Dsec\GM10927 Y   Drosophila erecta   Dere\GG13775 Y   Drosophila yakuba   Dyak\GE11173     Drosophila yakuba   Dyak\GE24897 Y   Drosophila ananassae   Dana\GF17646 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA15158 Y   Drosophila persimilis   Dper\GL21783 Y   Drosophila willistoni   Dwil\GK10822 Y   Drosophila virilis   Dvir\GJ23221 Y   Drosophila mojavensis   Dmoj\GI23661 Y   Drosophila grimshawi   Dgri\GH14515 Y
Orthologs in non-Drosophila Dipterans (EOG67WNWR)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL006043   Anopheles gambiae Malaria mosquito  Agam\AGAP002035   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ002027   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012538
Orthologs in non-Dipteran Insects (EOG6XKT32)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB50748   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG026031   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH11548   Camponotus floridanus Florida carpenter ant  Cflo\CFLO13366   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL18521   Pogonomyrmex barbatus Red harvester ant  Pbar\PB13180   Solenopsis invicta Red fire ant  Sinv\SINV17791   Acyrthosiphon pisum Pea aphid  Apim\ACYPI008674   Bombyx mori Silkmoth  Bmor\BGIBMGA003436   Bombyx mori Silkmoth  Bmor\BGIBMGA003435   Pediculus humanus Human body louse  Phum\PHUM253710   Tribolium castaneum Red flour beetle  Tcas\TC014258
Orthologs in non-Insect Arthropods (EOG6ZS7J6)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\Amhr2   Ixodes scapularis Deer tick  Isca\ISCW022386
Orthologs in non-Arthropod Metazoa (EOG6R873M)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\F43G9.12   Danio rerio Zebrafish  Drer\zgc:171819   Danio rerio Zebrafish  Drer\zgc:158234   Xenopus tropicalis Western clawed frog  Xtro\gcfc1   Xenopus tropicalis Western clawed frog  Xtro\c2orf3   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022128   Gallus gallus Domestic chicken  Ggal\ENSGALG00000024314   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022216   Gallus gallus Domestic chicken  Ggal\LOC422067   Gallus gallus Domestic chicken  Ggal\LOC770742   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022054   Gallus gallus Domestic chicken  Ggal\ENSGALG00000024311   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022196   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022253   Gallus gallus Domestic chicken  Ggal\ENSGALG00000021984   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022059   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022036   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022453   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022594   Gallus gallus Domestic chicken  Ggal\ENSGALG00000023044   Gallus gallus Domestic chicken  Ggal\ENSGALG00000023046   Gallus gallus Domestic chicken  Ggal\GCFC1   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022182   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022133   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022252   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022156   Gallus gallus Domestic chicken  Ggal\ENSGALG00000021994   Gallus gallus Domestic chicken  Ggal\ENSGALG00000021985   Gallus gallus Domestic chicken  Ggal\LOC771926   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022041   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022056   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022185   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022060   Gallus gallus Domestic chicken  Ggal\ENSGALG00000021968   Gallus gallus Domestic chicken  Ggal\ENSGALG00000021957   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022590   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022240   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022215   Gallus gallus Domestic chicken  Ggal\ENSGALG00000024312   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022615   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022086   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022097   Mus musculus House mouse  Mmus\Gcfc2   Mus musculus House mouse  Mmus\Gcfc1   Rattus norvegicus Norway rat  Rnor\Gcfc1   Rattus norvegicus Norway rat  Rnor\RGD1304792_predicted   Homo sapiens Human  Hsap\GCFC1   Homo sapiens Human  Hsap\GCFC2
Human Orthologs (2)
Gene OMIM HGNC Hsap\GCFC1     Hsap\GCFC2
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD19906 Drosophila sechellia Dsec\GM10927 Drosophila erecta Dere\GG13775 Drosophila yakuba Dyak\GE24897 Drosophila ananassae Dana\GF17646 Drosophila pseudoobscura pseudoobscura Dpse\GA15158 Drosophila persimilis Dper\GL21783 Drosophila willistoni Dwil\GK10822 Drosophila virilis Dvir\GJ23221 Drosophila mojavensis Dmoj\GI23661 Drosophila grimshawi Dgri\GH14515
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
VDRC	v43943 w1118; P{GD4423}v43943/TM3 v43944 w1118; P{GD4423}v43944/TM3
Genomic Clones ( 2 )
	BACR03E11 BACR03K19 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 26 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH04034 LD29489
Other clones	DPiM_LD29489
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH02387 GH08763 LD05243 LD08475 LD16426 LD18350 LP07350 LP17060 RE13942 RE24752 RE26981 RE27369 RE70624 RE70653
Other clones	EK040052 EK107661 EK136016 EK148133 EK220555 EK243902 EK257805 EK291609 FGM001D10
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0037466 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40842
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141432 NM_001260027 NM_001275396 RefSeq (Proteins) • NP_649689 NP_001246956 NP_001262325 DDBJ / EMBL / GenBank • AAF54074 AAM50121 AFH06275 AGB95708 AI063917 AW940154 AY119467 Entrez Gene - A searchable database of RefSeq genes. • 40842 UniProtKB/TrEMBL • Q8MRQ8 Q9VI54
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • GC-rich sequence DNA-binding factor (IPR012890) GC-rich sequence DNA-binding factor domain (IPR022783)
Linkouts
	BioGRID - A database of protein and genetic interactions • 66040 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0037466 DroID - A comprehensive database of gene and protein interactions. • FBgn0037466 DRSC - Results from RNAi screens. • FBgn0037466 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037466 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1965-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0037466 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40842 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40842 modMine - Data generated by the modENCODE project. • FBgn0037466
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG1965 (Izutsu et al., 2012, Herold et al., 2009, Beckstead et al., 2007, Roy et al., 2011, Keleman et al., 2009.8.5, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
References ( 20 )
Research paper	Izutsu et al., 2012, PLoS ONE 7(3): e33288 Genome features of "dark-fly", a Drosophila line reared long-term in a dark environment. [FBrf0217825] Dottorini et al., 2011, BMC Bioinformatics 12: 34 Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis. [FBrf0214379] Roy et al., 2011, Mol. Genet. Genomics 285(2): 113--123 Lack of the Drosophila BEAF insulator proteins alters regulation of genes in the Antennapedia complex. [FBrf0212912] Herold et al., 2009, Mol. Cell. Biol. 29(1): 281--301 Conservation of the protein composition and electron microscopy structure of Drosophila melanogaster and human spliceosomal complexes. [FBrf0207172] Beckstead et al., 2007, Insect Biochem. Mol. Biol. 37(6): 570--578 Specific transcriptional responses to juvenile hormone and ecdysone in Drosophila. [FBrf0201760]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] Guruharsha et al., 2011, Cell 147(3): Table S3. [FBrf0218395] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452] Swanson et al., 2001, Proc. Natl. Acad. Sci. USA 98: Gene characteristics and dN/dS ratios of Drosophila simulans. [FBrf0137427]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
Curated genome annotation	FamiliarityBreedsContempt, 1999.11, [Automatic annotations performed at the Celera Jamboreee.] [Automatic annotations performed at the Celera Jamboreee.] [FBrf0126705]