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Gene Dmel\tex

General Information
Symbol	Dmel\tex	Species	D. melanogaster
Name	tex	Annotation symbol	CG9615
Feature type	protein_coding_gene	FlyBase ID	FBgn0037569
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	84F10-84F11	Sequence location	3R:4,133,195..4,134,367 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene tex is referred to in FlyBase by the symbol Dmel\tex (CG9615, FBgn0037569). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: G-protein beta WD-40 repeat; WD40 repeat; WD40-like Beta Propeller; WD40-repeat-containing domain; WD40/YVTN repeat-like-containing domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval trachea, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1637038_at partially aligns to an exonic region of the only FlyBase-annotated transcript isoform of tex: 12 out of 13 probes fall into this exonic region. Gene sequence location is 3R:4133195..4134367.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 84F10-84F11   Limits computationally determined from genome sequence between P{PZ}Mcm2rL074 and P{EP}EP833
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\tex for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.49
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) tex-RA FBtr0081861  NM_141527   1063   320
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein tex-PA   FBpp0081350   36.4   320   6.43     NP_649784   AAF54217
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • WD40-repeat-containing domain (IPR017986) WD40/YVTN repeat-like-containing domain (IPR015943) WD40 repeat (IPR001680) WD40-like Beta Propeller (IPR011659) G-protein beta WD-40 repeat (IPR020472)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF54217   AJ556819 CAD89224   AY118857 AAM50717   BI352949   BI373455   BP541696   BT044349   BX069001   CO269298   CO301691   CO310428   CO316124   CO326867   CO342343   EC059665   EC085724   EC202089   EC225809   EC258761   EC259446   GH748268   GH750268   GH750873   GH751716   GH752206   GH753156   GH756266   GH756860   GH758217   GH758767   GH761250   GH770997   GH771806   GH776527   GH777175   GH777287   GH780752   GH781808   GH784585   GH788227   GH791378   GH793380   GH793480   GH800943   GH803238   GH803637   GH806979   GH807449   GH811610   GH814472   GH819724   GH821494   GH825275   GH825313   GH827295   GH830141   GH831576   GH833494   GH834200   GH836779   GH837122   GH837493   GH848411   GH848731   GH848842   GH849008   GH853955   GH854708   GH856259   GH856826   GH857012   GH862183   GH864211   GH865117   GH869471   GH870262   GH873934   GH879229   GH879884   GH881376   GH881623   GH882029   GH882508   GH883186   GH886304   GH886507   GH886700   GH887685   GH891558   GH891808   GH891890   GH891962   GH895888   GH895921   GH896404   GH896414   GH896587   GH898450   GH902359   GH904033   GH904323   GH905964   GH906719   GH912382   GH912644   GH917604   GH918072   GH918812   GH920449   GH922361   GH925003   GH926126   GH926780   GH927358   GH929287   GH933929   GH936061   GH938983
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VHT2 Q8MSF3
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 4 -- 6   organism | gap expression pattern   (Fisher et al., 2012) yolk nucleus   (Fisher et al., 2012) embryonic stage 7 -- 8   dorsal ectoderm   (Fisher et al., 2012) hindgut anlage   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) embryonic stage 9 -- 10   amnioserosa   (Fisher et al., 2012) inclusive hindgut primordium   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 13 -- 16   amnioserosa   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
microtubule associated complex inferred from direct assay (Hughes et al., 2008)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval trachea, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    179.325 Larval Midgut    25.1 Larval Hindgut    32.1 Larval Malpighian Tubules    32.6 Larval Fat Body    48.1 Larval Salivary Gland    89 Larval Trachea    100.2 Larval Carcass    52.9 Adult Head    32.2 Adult Eye    29.2 Adult Brain    31.1 Adult Thoracic-Abdominal Ganglion    36.3 Adult Crop    37.3 Adult Midgut    35.7 Adult Hindgut    25.5 Adult Malpighian Tubules    29.4 Adult Fat Body    29.9 Adult Salivary Gland    37.5 Adult Heart    71.175 Adult VirginFemale Spermatheca    51.3 Adult InseminatedFemale Spermatheca    48.1 Adult Ovary    112.9 Adult Testis    53.8 Adult Male Accessory Gland    71.3 Adult Carcass    34.2 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    179.325 Larval Midgut    25.1 Larval Hindgut    32.1 Larval Malpighian Tubules    32.6 Larval Fat Body    48.1 Larval Salivary Gland    89 Larval Trachea    100.2 Larval Carcass    52.9 Adult Head    32.2 Adult Eye    29.2 Adult Brain    31.1 Adult Thoracic-Abdominal Ganglion    36.3 Adult Crop    37.3 Adult Midgut    35.7 Adult Hindgut    25.5 Adult Malpighian Tubules    29.4 Adult Fat Body    29.9 Adult Salivary Gland    37.5 Adult Heart    71.175 Adult VirginFemale Spermatheca    51.3 Adult InseminatedFemale Spermatheca    48.1 Adult Ovary    112.9 Adult Testis    53.8 Adult Male Accessory Gland    71.3 Adult Carcass    34.2 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    179.325 Larval Midgut    25.1 Larval Hindgut    32.1 Larval Malpighian Tubules    32.6 Larval Fat Body    48.1 Larval Salivary Gland    89 Larval Trachea    100.2 Larval Carcass    52.9 Adult Head    32.2 Adult Eye    29.2 Adult Brain    31.1 Adult Thoracic-Abdominal Ganglion    36.3 Adult Crop    37.3 Adult Midgut    35.7 Adult Hindgut    25.5 Adult Malpighian Tubules    29.4 Adult Fat Body    29.9 Adult Salivary Gland    37.5 Adult Heart    71.175 Adult VirginFemale Spermatheca    51.3 Adult InseminatedFemale Spermatheca    48.1 Adult Ovary    112.9 Adult Testis    53.8 Adult Male Accessory Gland    71.3 Adult Carcass    34.2 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    179.325 Larval Midgut    25.1 Larval Hindgut    32.1 Larval Malpighian Tubules    32.6 Larval Fat Body    48.1 Larval Salivary Gland    89 Larval Trachea    100.2 Larval Carcass    52.9 Adult Head    32.2 Adult Eye    29.2 Adult Brain    31.1 Adult Thoracic-Abdominal Ganglion    36.3 Adult Crop    37.3 Adult Midgut    35.7 Adult Hindgut    25.5 Adult Malpighian Tubules    29.4 Adult Fat Body    29.9 Adult Salivary Gland    37.5 Adult Heart    71.175 Adult VirginFemale Spermatheca    51.3 Adult InseminatedFemale Spermatheca    48.1 Adult Ovary    112.9 Adult Testis    53.8 Adult Male Accessory Gland    71.3 Adult Carcass    34.2 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    179.325 Larval Midgut    25.1 Larval Hindgut    32.1 Larval Malpighian Tubules    32.6 Larval Fat Body    48.1 Larval Salivary Gland    89 Larval Trachea    100.2 Larval Carcass    52.9 Adult Head    32.2 Adult Eye    29.2 Adult Brain    31.1 Adult Thoracic-Abdominal Ganglion    36.3 Adult Crop    37.3 Adult Midgut    35.7 Adult Hindgut    25.5 Adult Malpighian Tubules    29.4 Adult Fat Body    29.9 Adult Salivary Gland    37.5 Adult Heart    71.175 Adult VirginFemale Spermatheca    51.3 Adult InseminatedFemale Spermatheca    48.1 Adult Ovary    112.9 Adult Testis    53.8 Adult Male Accessory Gland    71.3 Adult Carcass    34.2 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    179.325 Larval Midgut    25.1 Larval Hindgut    32.1 Larval Malpighian Tubules    32.6 Larval Fat Body    48.1 Larval Salivary Gland    89 Larval Trachea    100.2 Larval Carcass    52.9 Adult Head    32.2 Adult Eye    29.2 Adult Brain    31.1 Adult Thoracic-Abdominal Ganglion    36.3 Adult Crop    37.3 Adult Midgut    35.7 Adult Hindgut    25.5 Adult Malpighian Tubules    29.4 Adult Fat Body    29.9 Adult Salivary Gland    37.5 Adult Heart    71.175 Adult VirginFemale Spermatheca    51.3 Adult InseminatedFemale Spermatheca    48.1 Adult Ovary    112.9 Adult Testis    53.8 Adult Male Accessory Gland    71.3 Adult Carcass    34.2 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    179.325 Larval Midgut    25.1 Larval Hindgut    32.1 Larval Malpighian Tubules    32.6 Larval Fat Body    48.1 Larval Salivary Gland    89 Larval Trachea    100.2 Larval Carcass    52.9 Adult Head    32.2 Adult Eye    29.2 Adult Brain    31.1 Adult Thoracic-Abdominal Ganglion    36.3 Adult Crop    37.3 Adult Midgut    35.7 Adult Hindgut    25.5 Adult Malpighian Tubules    29.4 Adult Fat Body    29.9 Adult Salivary Gland    37.5 Adult Heart    71.175 Adult VirginFemale Spermatheca    51.3 Adult InseminatedFemale Spermatheca    48.1 Adult Ovary    112.9 Adult Testis    53.8 Adult Male Accessory Gland    71.3 Adult Carcass    34.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    179.325 Larval Midgut    25.1 Larval Hindgut    32.1 Larval Malpighian Tubules    32.6 Larval Fat Body    48.1 Larval Salivary Gland    89 Larval Trachea    100.2 Larval Carcass    52.9 Adult Head    32.2 Adult Eye    29.2 Adult Brain    31.1 Adult Thoracic-Abdominal Ganglion    36.3 Adult Crop    37.3 Adult Midgut    35.7 Adult Hindgut    25.5 Adult Malpighian Tubules    29.4 Adult Fat Body    29.9 Adult Salivary Gland    37.5 Adult Heart    71.175 Adult VirginFemale Spermatheca    51.3 Adult InseminatedFemale Spermatheca    48.1 Adult Ovary    112.9 Adult Testis    53.8 Adult Male Accessory Gland    71.3 Adult Carcass    34.2 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    no informative data   NA  Eye    29.2   NA  Brain    31.1   179.325  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    36.3   NA  Crop    37.3   no informative data  Midgut    no informative data   32.1  Hindgut    no informative data   32.6  Malpighian Tubules    no informative data   48.1  Fat Body    no informative data   89  Salivary Gland    no informative data   NA  Heart    71.175   100.2  Trachea    NA   NA  VirginFemale Spermatheca    no informative data   NA  InseminatedFemale Spermatheca    no informative data   NA  Ovary    112.9   NA  Testis    53.8   NA  Male Accessory Gland    71.3   52.9  Carcass    no informative data FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3    12 central nervous system, pupae P8    3 head, virgin 1-day female    3 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    3 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    2 carcass, larvae L3 wandering    8 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    7 testis, mated 4-day male    9 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3    12 central nervous system, pupae P8    3 head, virgin 1-day female    3 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    3 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    2 carcass, larvae L3 wandering    8 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    7 testis, mated 4-day male    9 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3    12 central nervous system, pupae P8    3 head, virgin 1-day female    3 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    3 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    2 carcass, larvae L3 wandering    8 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    7 testis, mated 4-day male    9 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3    12 central nervous system, pupae P8    3 head, virgin 1-day female    3 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    3 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    2 carcass, larvae L3 wandering    8 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    7 testis, mated 4-day male    9 accessory gland, mated 4-day male    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3    12 central nervous system, pupae P8    3 head, virgin 1-day female    3 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    3 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    2 carcass, larvae L3 wandering    8 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    7 testis, mated 4-day male    9 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3    12 central nervous system, pupae P8    3 head, virgin 1-day female    3 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    3 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    2 carcass, larvae L3 wandering    8 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    7 testis, mated 4-day male    9 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3    12 central nervous system, pupae P8    3 head, virgin 1-day female    3 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    3 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    2 carcass, larvae L3 wandering    8 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    7 testis, mated 4-day male    9 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    17 central nervous system, larvae L3    12 central nervous system, pupae P8    3 head, virgin 1-day female    3 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    2 head, mated 20-day female    2 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    3 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    2 carcass, larvae L3 wandering    8 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    7 ovary, mated 4-day female    7 testis, mated 4-day male    9 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    82 embryo 04-06hr    118 embryo 06-08hr    33 embryo 08-10hr    23 embryo 10-12hr    18 embryo 12-14hr    11 embryo 14-16hr    17 embryo 16-18hr    10 embryo 18-20hr    5 embryo 20-22hr    2 embryo 22-24hr    3 larva L1    12 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    12 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    11 pupae 3d postWPP    5 pupae 4d postWPP    8 adult male 01day    6 adult male 05day    9 adult male 30day    10 adult female 01day    20 adult female 05day    23 adult female 30day    23 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (38) embryo 02-04hr  (82) embryo 04-06hr  (118) embryo 06-08hr  (33) embryo 08-10hr    23 embryo 10-12hr    18 embryo 12-14hr    11 embryo 14-16hr    17 embryo 16-18hr    10 embryo 18-20hr    5 embryo 20-22hr    2 embryo 22-24hr    3 larva L1    12 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    12 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    11 pupae 3d postWPP    5 pupae 4d postWPP    8 adult male 01day    6 adult male 05day    9 adult male 30day    10 adult female 01day    20 adult female 05day    23 adult female 30day    23 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    82 embryo 04-06hr  (118) embryo 06-08hr    33 embryo 08-10hr    23 embryo 10-12hr    18 embryo 12-14hr    11 embryo 14-16hr    17 embryo 16-18hr    10 embryo 18-20hr    5 embryo 20-22hr    2 embryo 22-24hr    3 larva L1    12 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    12 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    11 pupae 3d postWPP    5 pupae 4d postWPP    8 adult male 01day    6 adult male 05day    9 adult male 30day    10 adult female 01day    20 adult female 05day    23 adult female 30day    23 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    82 embryo 04-06hr    118 embryo 06-08hr    33 embryo 08-10hr    23 embryo 10-12hr    18 embryo 12-14hr    11 embryo 14-16hr    17 embryo 16-18hr    10 embryo 18-20hr    5 embryo 20-22hr    2 embryo 22-24hr    3 larva L1    12 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    12 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    11 pupae 3d postWPP    5 pupae 4d postWPP    8 adult male 01day    6 adult male 05day    9 adult male 30day    10 adult female 01day    20 adult female 05day    23 adult female 30day    23 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    82 embryo 04-06hr    118 embryo 06-08hr    33 embryo 08-10hr    23 embryo 10-12hr    18 embryo 12-14hr    11 embryo 14-16hr    17 embryo 16-18hr    10 embryo 18-20hr    5 embryo 20-22hr    2 embryo 22-24hr    3 larva L1    12 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    12 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    11 pupae 3d postWPP    5 pupae 4d postWPP    8 adult male 01day    6 adult male 05day    9 adult male 30day    10 adult female 01day    20 adult female 05day    23 adult female 30day    23 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (38) embryo 02-04hr  (82) embryo 04-06hr  (118) embryo 06-08hr  (33) embryo 08-10hr    23 embryo 10-12hr    18 embryo 12-14hr    11 embryo 14-16hr    17 embryo 16-18hr    10 embryo 18-20hr    5 embryo 20-22hr    2 embryo 22-24hr    3 larva L1    12 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    12 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    11 pupae 3d postWPP    5 pupae 4d postWPP    8 adult male 01day    6 adult male 05day    9 adult male 30day    10 adult female 01day    20 adult female 05day    23 adult female 30day    23 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    82 embryo 04-06hr  118 embryo 06-08hr    33 embryo 08-10hr    23 embryo 10-12hr    18 embryo 12-14hr    11 embryo 14-16hr    17 embryo 16-18hr    10 embryo 18-20hr    5 embryo 20-22hr    2 embryo 22-24hr    3 larva L1    12 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    12 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    11 pupae 3d postWPP    5 pupae 4d postWPP    8 adult male 01day    6 adult male 05day    9 adult male 30day    10 adult female 01day    20 adult female 05day    23 adult female 30day    23 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    82 embryo 04-06hr    118 embryo 06-08hr    33 embryo 08-10hr    23 embryo 10-12hr    18 embryo 12-14hr    11 embryo 14-16hr    17 embryo 16-18hr    10 embryo 18-20hr    5 embryo 20-22hr    2 embryo 22-24hr    3 larva L1    12 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    12 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    17 white prepupae new    15 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    11 pupae 3d postWPP    5 pupae 4d postWPP    8 adult male 01day    6 adult male 05day    9 adult male 30day    10 adult female 01day    20 adult female 05day    23 adult female 30day    23 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    8 embryonic GM2    9 embryonic Kc167    10 embryonic S1    16 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    13 wing disc ML-DmD8    11 wing disc ML-DmD9    21 wing disc ML-DmD16-c3    16 wing disc ML-DmD21    26 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    19 mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    17 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    8 ovary fGS/OSS    14 ovary OSC    12 ovary OSS    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    8 embryonic GM2    9 embryonic Kc167    10 embryonic S1    16 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    13 wing disc ML-DmD8    11 wing disc ML-DmD9    21 wing disc ML-DmD16-c3    16 wing disc ML-DmD21  26 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    19 mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    17 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    8 ovary fGS/OSS    14 ovary OSC    12 ovary OSS    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    8 embryonic GM2    9 embryonic Kc167    10 embryonic S1    16 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    13 wing disc ML-DmD8    11 wing disc ML-DmD9    21 wing disc ML-DmD16-c3    16 wing disc ML-DmD21    26 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    19 mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    17 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    8 ovary fGS/OSS    14 ovary OSC    12 ovary OSS    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    8 embryonic GM2    9 embryonic Kc167    10 embryonic S1    16 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    13 wing disc ML-DmD8    11 wing disc ML-DmD9    21 wing disc ML-DmD16-c3    16 wing disc ML-DmD21    26 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    19 mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    17 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    8 ovary fGS/OSS    14 ovary OSC    12 ovary OSS    10 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    8 embryonic GM2    9 embryonic Kc167    10 embryonic S1    16 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    13 wing disc ML-DmD8    11 wing disc ML-DmD9    21 wing disc ML-DmD16-c3    16 wing disc ML-DmD21    26 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    19 mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    17 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    8 ovary fGS/OSS    14 ovary OSC    12 ovary OSS    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    8 embryonic GM2    9 embryonic Kc167    10 embryonic S1    16 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    13 wing disc ML-DmD8    11 wing disc ML-DmD9    21 wing disc ML-DmD16-c3    16 wing disc ML-DmD21  26 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    19 mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    17 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    8 ovary fGS/OSS    14 ovary OSC    12 ovary OSS    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    8 embryonic GM2    9 embryonic Kc167    10 embryonic S1    16 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    13 wing disc ML-DmD8    11 wing disc ML-DmD9    21 wing disc ML-DmD16-c3    16 wing disc ML-DmD21    26 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    19 mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    17 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    8 ovary fGS/OSS    14 ovary OSC    12 ovary OSS    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    23 Schneider line 2 Sg4    21 embryonic 1182-4H    8 embryonic GM2    9 embryonic Kc167    10 embryonic S1    16 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    13 wing disc ML-DmD8    11 wing disc ML-DmD9    21 wing disc ML-DmD16-c3    16 wing disc ML-DmD21    26 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    19 mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    17 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    8 ovary fGS/OSS    14 ovary OSC    12 ovary OSS    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    6 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    6 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    6 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    6 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    6 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    6 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    6 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    6 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_06 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	BDGP expression data • RE60740 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037569 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9615-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for tex Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 texGD14270 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of tex Class Mutagen Stocks Known lesion texd08549 P-element activity 2 -- texG6767 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of tex Class Mutagen Stocks Known lesion texGD14270 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes texKK101330 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes texNIG.9615R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6147 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD14270} NA P{KK101330} NA P{NIG.9615R} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}texG6767 NA P{XP}texd08549 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
microtubule associated complex inferred from direct assay (Hughes et al., 2008)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions tex allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0037569 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40983 SignaLink - A protein-protein and protein-miRNA interaction database with multi-layered structure and multiple confidence scores. • Q8MSF3
Orthologs
OrthoDB Orthologs (39) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6XH0K3 Dipteran inclusive ortholog search EOG6CRM7R Insect inclusive ortholog search EOG61RNQK Arthropod inclusive ortholog search EOG6Z8WC2 Metazoa inclusive ortholog search EOG6DNSZ5
Orthologs in Drosophila Species (EOG6XH0K3)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\tex     Drosophila simulans   Dsim\GD20876 Y   Drosophila sechellia   Dsec\GM26354 Y   Drosophila erecta   Dere\GG17460 Y   Drosophila yakuba   Dyak\GE24859 Y   Drosophila ananassae   Dana\GF16672 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA21914 Y   Drosophila persimilis   Dper\GL24122 Y   Drosophila willistoni   Dwil\GK11705 Y   Drosophila virilis   Dvir\GJ14380 Y   Drosophila mojavensis   Dmoj\GI10781 Y   Drosophila grimshawi   Dgri\GH18366 Y
Orthologs in non-Drosophila Dipterans (EOG6CRM7R)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL006075   Anopheles gambiae Malaria mosquito  Agam\AGAP003891   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ003676
Orthologs in non-Dipteran Insects (EOG61RNQK)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC413173   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG012522   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH14711   Atta cephalotes Leafcutter ant  Acep\ACEP24126   Camponotus floridanus Florida carpenter ant  Cflo\CFLO13940   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL18833   Linepithema humile Argentine ant  Lhum\LH18773   Pogonomyrmex barbatus Red harvester ant  Pbar\PB12591   Solenopsis invicta Red fire ant  Sinv\SINV17402   Acyrthosiphon pisum Pea aphid  Apim\ACYPI008848   Bombyx mori Silkmoth  Bmor\BGIBMGA010800   Pediculus humanus Human body louse  Phum\PHUM182160   Tribolium castaneum Red flour beetle  Tcas\TC000095
Orthologs in non-Insect Arthropods (EOG6Z8WC2)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\Cngb3   Ixodes scapularis Deer tick  Isca\ISCW014203
Orthologs in non-Arthropod Metazoa (EOG6DNSZ5)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\thoc-3   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_003541gn   Danio rerio Zebrafish  Drer\thoc3   Xenopus tropicalis Western clawed frog  Xtro\thoc3   Gallus gallus Domestic chicken  Ggal\THOC3   Mus musculus House mouse  Mmus\Thoc3   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000036610   Rattus norvegicus Norway rat  Rnor\Thoc3   Homo sapiens Human  Hsap\ENSG00000051596
Human Orthologs (1)
Gene OMIM HGNC Hsap\ENSG00000051596
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD20876 Drosophila sechellia Dsec\GM26354 Drosophila erecta Dere\GG17460 Drosophila yakuba Dyak\GE24859 Drosophila ananassae Dana\GF16672 Drosophila pseudoobscura pseudoobscura Dpse\GA21914 Drosophila persimilis Dper\GL24122 Drosophila willistoni Dwil\GK11705 Drosophila virilis Dvir\GJ14380 Drosophila mojavensis Dmoj\GI10781 Drosophila grimshawi Dgri\GH18366
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	32604 w1118; P{EP}texG6767 19297 w1118; P{XP}texd08549/TM6B, Tb1
Harvard	- P{XP}texd08549
VDRC	v103909 P{KK101330}VIE-260B v24072 w1118; P{GD14270}v24072
Genomic Clones ( 1 )
	BACR33N15 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 108 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM21396
Other clones	FI07663
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	RE60740
Other clones	EK094054 EK181919 EK221624 EK263716 EP04759 EP14536 FGC004D10 RP003025978 RP003028301 RP003038713 RP003039746 RP003046711 RP003050476 RP003052447 RP003053923 RP003064099 RP003068830 RP003080239 RP003082377 RP003086486 RP003088178 RP003091030 RP003099688 RP003107616 RP003112756 RP003117639 RP003121501 RP003137856 RP003144713 RP003163824 RP003186540 RP003188129 RP003196487 RP003196962 RP003209976 RP003213244 RP003221935 RP003222776 RP003237207 RP003241000 RP003259534 RP003261598 RP003261638 RP003263012 RP003267952 RP003277470 RP003284532 RP003287630 RP003288979 RP003292301 RP003299197 RP003300723 RP003305699 RP003308374 RP003316417 RP003324638 RP003357718 RP003358764 RP003364560 RP003379545 RP003382596 RP003386856 RP003389911 RP003391834 RP003397975 RP003403149 RP003411643 RP003423817 RP003427224 RP003432235 RP003434139 RP003444127 RP003446430 RP003451318 RP003459352 RP003470658 RP003482818 RP003484399 RP003499283 RP003510084 RP003513138 RP003514501 RP003521221 RP003525094 RP003528950 RP003534288 RP003545562 RP003563136 RP003588054 RP003589136 RP003589258 RP003594774 RP003595445 RP003638468 RP003648361 RP003649170 RP003651348 RP003657361 RP003657705 RP003657845 RP003659389 RP003670882 RP003671680 RP003674287 RP003680865
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0037569 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40983
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: tex CG9615 (Izaurralde, 2003.4.15)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141527 RefSeq (Proteins) • NP_649784 DDBJ / EMBL / GenBank • AAF54217 AAM50717 AJ556819 AY118857 BI352949 CAD89224 Entrez Gene - A searchable database of RefSeq genes. • 40983 UniProtKB/TrEMBL • Q8MSF3 Q9VHT2
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • WD40-repeat-containing domain (IPR017986) WD40/YVTN repeat-like-containing domain (IPR015943) WD40 repeat (IPR001680) WD40-like Beta Propeller (IPR011659) G-protein beta WD-40 repeat (IPR020472) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE60740
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0037569 DRSC - Results from RNAi screens. • FBgn0037569 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037569 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9615-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0037569 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40983 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40983 modMine - Data generated by the modENCODE project. • FBgn0037569 SignaLink - A protein-protein and protein-miRNA interaction database with multi-layered structure and multiple confidence scores. • Q8MSF3
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	CG9615 (Keleman et al., 2009.8.5, Hughes et al., 2008, Rehwinkel et al., 2004) tex (Fisher et al., 2008, Chung et al., 2011, Japanese National Institute of Genetics, 2012.5.21) TEX1 (Rehwinkel et al., 2004)
Name Synonym	tex
Secondary FlyBase IDs
References ( 20 )
Research paper	Chung et al., 2011, Genome Res. 21(2): 286--300 Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans. [FBrf0213087] Fisher et al., 2008, Commun. Integr. Biol. 1(1): 47--50 The functional domain grouping of microtubule associated proteins. [FBrf0208562] Hughes et al., 2008, PLoS Biol. 6(4): e98 A microtubule interactome: complexes with roles in cell cycle and mitosis. [FBrf0204649] Rehwinkel et al., 2004, Nat. Struct. Mol. Biol. 11(6): 558--566 Genome-wide analysis of mRNAs regulated by the THO complex in Drosophila melanogaster. [FBrf0179407]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Bellen, 2010.10.18, BDGP_2010_1022.GenExel.xml BDGP_2010_1022.GenExel.xml [FBrf0212107] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
DNA/RNA sequence record	Izaurralde, 2003.4.15, GenBank/EMBL/DDBJ: AJ556819 Drosophila melanogaster mRNA for Tex protein. [FBrf0181620]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]
Curated genome annotation	FamiliarityBreedsContempt, 1999.11, [Automatic annotations performed at the Celera Jamboreee.] [Automatic annotations performed at the Celera Jamboreee.] [FBrf0126705] Li, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126682]