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Gene Dmel\hyx

General Information
Symbol	Dmel\hyx	Species	D. melanogaster
Name	hyrax	Annotation symbol	CG11990
Feature type	protein_coding_gene	FlyBase ID	FBgn0037657
Gene Model Status	Current	Stock availability	7 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	85C3-85C3	Sequence location	3R:4,864,001..4,868,072 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene hyrax is referred to in FlyBase by the symbol Dmel\hyx (CG11990, FBgn0037657). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: transcription factor binding. There is experimental evidence that it is involved in the biological process: imaginal disc-derived wing margin morphogenesis; imaginal disc-derived wing vein morphogenesis; chaeta morphogenesis; positive regulation of smoothened signaling pathway; positive regulation of transcription, DNA-dependent; Wnt receptor signaling pathway; imaginal disc-derived leg morphogenesis; compound eye morphogenesis. 11 alleles are reported. The phenotype of these alleles is annotated with: leg. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: RNA polymerase II accessory factor, Cdc73. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, adult midgut, larval/adult hindgut, larval Malpighian tubules, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1634550_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of hyx. Gene sequence location is 3R:4864001..4868072.
External Summaries
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10	Controlled Vocabulary Terms imaginal disc-derived leg morphogenesis
FB2012_01	Sequence features HFA14462 BKN21171
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 85C3-85C3   Limits computationally determined from genome sequence between P{lacW}l(3)L4740L4740 and P{EP}D1EP473
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\hyx for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) hyx-RA FBtr0081968  NM_141606   2220   538 hyx-RB FBtr0300415  NM_001170093   2302   538
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein hyx-PA   FBpp0081448   61.4   538   10.19     NP_649863   AAF54331 hyx-PB   FBpp0289644   61.4   538   10.19     NP_001163564   ACZ94861
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • RNA polymerase II accessory factor, Cdc73 (IPR007852)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA140878   AA201491   AA816631   AA951094   AA978583   AE014297 AAF54331   AE014297 ACZ94861   AI455180   AI456696   AI456861   AI516520   AI516634   AI546229   AI546421   AW943939   AY061525 AAL29073   BG639046   BI228515   BI236836   BI353169   BI373640   BI604538   BI629995   CL527955   CO187311   CO265283   CO276928   CO291886   CO294274   CO300251   CO306828   CO322736   CO332644   CS419449   DQ305403 ABD58935   EC066929   EC069048   EC074149   EC083900   EC086039   EC089859   EC209080   EC212086   EC214753   EC224035   EC231958   EC233337   EC239778   EC240088   EL882136   EV596176   GH743486   GH744596   GH746365   GH747448   GH763226   GH765153   GH766479   GH767120   GH769304
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VHI1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0037657    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0037657 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0037657 expression level Developmental Stage   Expression Level embryo 00-02hr    4171 embryo 02-04hr    5944 embryo 04-06hr    6012 embryo 06-08hr    6211 embryo 08-10hr    4981 embryo 10-12hr    4071 embryo 12-14hr    2720 embryo 14-16hr    2189 embryo 16-18hr    1785 embryo 18-20hr    1163 embryo 20-22hr    1573 embryo 22-24hr    1590 larva L1    1275 larva L2    1075 larva L3 12hr old    894 larva L3 puffstage 1-2    940 larva L3 puffstage 3-6    1375 larva L3 puffstage 7-9    1582 white prepupae new    1623 white prepupae 12hr    1815 white prepupae 24hr    2295 pupae 2d postWPP    1599 pupae 3d postWPP    1112 pupae 4d postWPP    917 adult male 01day    1039 adult male 05day    1136 adult male 30day    1083 adult female 01day    1719 adult female 05day    2478 adult female 30day    2668 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (4171) embryo 02-04hr  (5944) embryo 04-06hr  (6012) embryo 06-08hr  (6211) embryo 08-10hr  (4981) embryo 10-12hr  (4071) embryo 12-14hr  (2720) embryo 14-16hr  (2189) embryo 16-18hr  (1785) embryo 18-20hr  (1163) embryo 20-22hr  (1573) embryo 22-24hr  (1590) larva L1  (1275) larva L2  (1075) larva L3 12hr old  (894) larva L3 puffstage 1-2  (940) larva L3 puffstage 3-6  (1375) larva L3 puffstage 7-9  (1582) white prepupae new  (1623) white prepupae 12hr  (1815) white prepupae 24hr  (2295) pupae 2d postWPP  (1599) pupae 3d postWPP  (1112) pupae 4d postWPP  (917) adult male 01day  (1039) adult male 05day  (1136) adult male 30day  (1083) adult female 01day  (1719) adult female 05day  (2478) adult female 30day  (2668) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (4171) embryo 02-04hr  (5944) embryo 04-06hr  (6012) embryo 06-08hr  (6211) embryo 08-10hr  (4981) embryo 10-12hr  (4071) embryo 12-14hr  (2720) embryo 14-16hr  (2189) embryo 16-18hr  (1785) embryo 18-20hr    1163 embryo 20-22hr  (1573) embryo 22-24hr  (1590) larva L1    1275 larva L2    1075 larva L3 12hr old    894 larva L3 puffstage 1-2    940 larva L3 puffstage 3-6    1375 larva L3 puffstage 7-9  (1582) white prepupae new  (1623) white prepupae 12hr  (1815) white prepupae 24hr  (2295) pupae 2d postWPP  (1599) pupae 3d postWPP    1112 pupae 4d postWPP    917 adult male 01day    1039 adult male 05day    1136 adult male 30day    1083 adult female 01day  (1719) adult female 05day  (2478) adult female 30day  (2668) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    4171 embryo 02-04hr    5944 embryo 04-06hr    6012 embryo 06-08hr    6211 embryo 08-10hr    4981 embryo 10-12hr    4071 embryo 12-14hr    2720 embryo 14-16hr    2189 embryo 16-18hr    1785 embryo 18-20hr    1163 embryo 20-22hr    1573 embryo 22-24hr    1590 larva L1    1275 larva L2    1075 larva L3 12hr old    894 larva L3 puffstage 1-2    940 larva L3 puffstage 3-6    1375 larva L3 puffstage 7-9    1582 white prepupae new    1623 white prepupae 12hr    1815 white prepupae 24hr    2295 pupae 2d postWPP    1599 pupae 3d postWPP    1112 pupae 4d postWPP    917 adult male 01day    1039 adult male 05day    1136 adult male 30day    1083 adult female 01day    1719 adult female 05day    2478 adult female 30day    2668 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    4171 embryo 02-04hr    5944 embryo 04-06hr    6012 embryo 06-08hr    6211 embryo 08-10hr    4981 embryo 10-12hr    4071 embryo 12-14hr    2720 embryo 14-16hr    2189 embryo 16-18hr    1785 embryo 18-20hr    1163 embryo 20-22hr    1573 embryo 22-24hr    1590 larva L1    1275 larva L2    1075 larva L3 12hr old    894 larva L3 puffstage 1-2    940 larva L3 puffstage 3-6    1375 larva L3 puffstage 7-9    1582 white prepupae new    1623 white prepupae 12hr    1815 white prepupae 24hr    2295 pupae 2d postWPP    1599 pupae 3d postWPP    1112 pupae 4d postWPP    917 adult male 01day    1039 adult male 05day    1136 adult male 30day    1083 adult female 01day    1719 adult female 05day    2478 adult female 30day    2668 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0037657 expression level Developmental Stage   Expression Level embryo 00-02hr    4171 embryo 02-04hr    5944 embryo 04-06hr    6012 embryo 06-08hr    6211 embryo 08-10hr    4981 embryo 10-12hr    4071 embryo 12-14hr    2720 embryo 14-16hr    2189 embryo 16-18hr    1785 embryo 18-20hr    1163 embryo 20-22hr    1573 embryo 22-24hr    1590 larva L1    1275 larva L2    1075 larva L3 12hr old    894 larva L3 puffstage 1-2    940 larva L3 puffstage 3-6    1375 larva L3 puffstage 7-9    1582 white prepupae new    1623 white prepupae 12hr    1815 white prepupae 24hr    2295 pupae 2d postWPP    1599 pupae 3d postWPP    1112 pupae 4d postWPP    917 adult male 01day    1039 adult male 05day    1136 adult male 30day    1083 adult female 01day    1719 adult female 05day    2478 adult female 30day    2668 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (4171) embryo 02-04hr  (5944) embryo 04-06hr  (6012) embryo 06-08hr  (6211) embryo 08-10hr  (4981) embryo 10-12hr  (4071) embryo 12-14hr  (2720) embryo 14-16hr  (2189) embryo 16-18hr  (1785) embryo 18-20hr  (1163) embryo 20-22hr  (1573) embryo 22-24hr  (1590) larva L1  (1275) larva L2  (1075) larva L3 12hr old  (894) larva L3 puffstage 1-2  (940) larva L3 puffstage 3-6  (1375) larva L3 puffstage 7-9  (1582) white prepupae new  (1623) white prepupae 12hr  (1815) white prepupae 24hr  (2295) pupae 2d postWPP  (1599) pupae 3d postWPP  (1112) pupae 4d postWPP  (917) adult male 01day  (1039) adult male 05day  (1136) adult male 30day  (1083) adult female 01day  (1719) adult female 05day  (2478) adult female 30day  (2668) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (4171) embryo 02-04hr  (5944) embryo 04-06hr  (6012) embryo 06-08hr  (6211) embryo 08-10hr  (4981) embryo 10-12hr  (4071) embryo 12-14hr  (2720) embryo 14-16hr  2189 embryo 16-18hr  1785 embryo 18-20hr    1163 embryo 20-22hr  1573 embryo 22-24hr  1590 larva L1    1275 larva L2    1075 larva L3 12hr old    894 larva L3 puffstage 1-2    940 larva L3 puffstage 3-6    1375 larva L3 puffstage 7-9  1582 white prepupae new  1623 white prepupae 12hr  1815 white prepupae 24hr  2295 pupae 2d postWPP  1599 pupae 3d postWPP    1112 pupae 4d postWPP    917 adult male 01day    1039 adult male 05day    1136 adult male 30day    1083 adult female 01day  1719 adult female 05day  (2478) adult female 30day  (2668) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    4171 embryo 02-04hr    5944 embryo 04-06hr    6012 embryo 06-08hr    6211 embryo 08-10hr    4981 embryo 10-12hr    4071 embryo 12-14hr    2720 embryo 14-16hr    2189 embryo 16-18hr    1785 embryo 18-20hr    1163 embryo 20-22hr    1573 embryo 22-24hr    1590 larva L1    1275 larva L2    1075 larva L3 12hr old    894 larva L3 puffstage 1-2    940 larva L3 puffstage 3-6    1375 larva L3 puffstage 7-9    1582 white prepupae new    1623 white prepupae 12hr    1815 white prepupae 24hr    2295 pupae 2d postWPP    1599 pupae 3d postWPP    1112 pupae 4d postWPP    917 adult male 01day    1039 adult male 05day    1136 adult male 30day    1083 adult female 01day    1719 adult female 05day    2478 adult female 30day    2668 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    4171 embryo 02-04hr    5944 embryo 04-06hr    6012 embryo 06-08hr    6211 embryo 08-10hr    4981 embryo 10-12hr    4071 embryo 12-14hr    2720 embryo 14-16hr    2189 embryo 16-18hr    1785 embryo 18-20hr    1163 embryo 20-22hr    1573 embryo 22-24hr    1590 larva L1    1275 larva L2    1075 larva L3 12hr old    894 larva L3 puffstage 1-2    940 larva L3 puffstage 3-6    1375 larva L3 puffstage 7-9    1582 white prepupae new    1623 white prepupae 12hr    1815 white prepupae 24hr    2295 pupae 2d postWPP    1599 pupae 3d postWPP    1112 pupae 4d postWPP    917 adult male 01day    1039 adult male 05day    1136 adult male 30day    1083 adult female 01day    1719 adult female 05day    2478 adult female 30day    2668 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0037657    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0037657 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, adult midgut, larval/adult hindgut, larval Malpighian tubules, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0037657 expression level Tissue   Expression Level Larval Central Nervous System    245.25 Larval Midgut    76.1 Larval Hindgut    119.5 Larval Malpighian Tubules    118.5 Larval Fat Body    91.1 Larval Salivary Gland    202.4 Larval Trachea    156.55 Larval Carcass    145.175 Adult Head    99.6 Adult Eye    73.2 Adult Brain    134.6 Adult Thoracic-Abdominal Ganglion    129.3 Adult Crop    110 Adult Midgut    107.8 Adult Hindgut    102.2 Adult Malpighian Tubules    95.9 Adult Fat Body    59.2 Adult Salivary Gland    182.2 Adult Heart    62.05 Adult VirginFemale Spermatheca    110.3 Adult InseminatedFemale Spermatheca    117.2 Adult Ovary    224.5 Adult Testis    84.8 Adult Male Accessory Gland    175.7 Adult Carcass    78.8 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    245.25 Larval Midgut    76.1 Larval Hindgut    119.5 Larval Malpighian Tubules    118.5 Larval Fat Body    91.1 Larval Salivary Gland    202.4 Larval Trachea    156.55 Larval Carcass    145.175 Adult Head    99.6 Adult Eye    73.2 Adult Brain    134.6 Adult Thoracic-Abdominal Ganglion    129.3 Adult Crop    110 Adult Midgut    107.8 Adult Hindgut    102.2 Adult Malpighian Tubules    95.9 Adult Fat Body    59.2 Adult Salivary Gland    182.2 Adult Heart    62.05 Adult VirginFemale Spermatheca    110.3 Adult InseminatedFemale Spermatheca    117.2 Adult Ovary    224.5 Adult Testis    84.8 Adult Male Accessory Gland    175.7 Adult Carcass    78.8 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    245.25 Larval Midgut    76.1 Larval Hindgut    119.5 Larval Malpighian Tubules    118.5 Larval Fat Body    91.1 Larval Salivary Gland    202.4 Larval Trachea    156.55 Larval Carcass    145.175 Adult Head    99.6 Adult Eye    73.2 Adult Brain    134.6 Adult Thoracic-Abdominal Ganglion    129.3 Adult Crop    110 Adult Midgut    107.8 Adult Hindgut    102.2 Adult Malpighian Tubules    95.9 Adult Fat Body    59.2 Adult Salivary Gland    182.2 Adult Heart    62.05 Adult VirginFemale Spermatheca    110.3 Adult InseminatedFemale Spermatheca    117.2 Adult Ovary    224.5 Adult Testis    84.8 Adult Male Accessory Gland    175.7 Adult Carcass    78.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    245.25 Larval Midgut    76.1 Larval Hindgut    119.5 Larval Malpighian Tubules    118.5 Larval Fat Body    91.1 Larval Salivary Gland    202.4 Larval Trachea    156.55 Larval Carcass    145.175 Adult Head    99.6 Adult Eye    73.2 Adult Brain    134.6 Adult Thoracic-Abdominal Ganglion    129.3 Adult Crop    110 Adult Midgut    107.8 Adult Hindgut    102.2 Adult Malpighian Tubules    95.9 Adult Fat Body    59.2 Adult Salivary Gland    182.2 Adult Heart    62.05 Adult VirginFemale Spermatheca    110.3 Adult InseminatedFemale Spermatheca    117.2 Adult Ovary    224.5 Adult Testis    84.8 Adult Male Accessory Gland    175.7 Adult Carcass    78.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0037657 expression level Tissue   Expression Level Larval Central Nervous System    245.25 Larval Midgut    76.1 Larval Hindgut    119.5 Larval Malpighian Tubules    118.5 Larval Fat Body    91.1 Larval Salivary Gland    202.4 Larval Trachea    156.55 Larval Carcass    145.175 Adult Head    99.6 Adult Eye    73.2 Adult Brain    134.6 Adult Thoracic-Abdominal Ganglion    129.3 Adult Crop    110 Adult Midgut    107.8 Adult Hindgut    102.2 Adult Malpighian Tubules    95.9 Adult Fat Body    59.2 Adult Salivary Gland    182.2 Adult Heart    62.05 Adult VirginFemale Spermatheca    110.3 Adult InseminatedFemale Spermatheca    117.2 Adult Ovary    224.5 Adult Testis    84.8 Adult Male Accessory Gland    175.7 Adult Carcass    78.8 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    245.25 Larval Midgut    76.1 Larval Hindgut    119.5 Larval Malpighian Tubules    118.5 Larval Fat Body    91.1 Larval Salivary Gland    202.4 Larval Trachea    156.55 Larval Carcass    145.175 Adult Head    99.6 Adult Eye    73.2 Adult Brain    134.6 Adult Thoracic-Abdominal Ganglion    129.3 Adult Crop    110 Adult Midgut    107.8 Adult Hindgut    102.2 Adult Malpighian Tubules    95.9 Adult Fat Body    59.2 Adult Salivary Gland    182.2 Adult Heart    62.05 Adult VirginFemale Spermatheca    110.3 Adult InseminatedFemale Spermatheca    117.2 Adult Ovary    224.5 Adult Testis    84.8 Adult Male Accessory Gland    175.7 Adult Carcass    78.8 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    245.25 Larval Midgut    76.1 Larval Hindgut    119.5 Larval Malpighian Tubules    118.5 Larval Fat Body    91.1 Larval Salivary Gland    202.4 Larval Trachea    156.55 Larval Carcass    145.175 Adult Head    99.6 Adult Eye    73.2 Adult Brain    134.6 Adult Thoracic-Abdominal Ganglion    129.3 Adult Crop    110 Adult Midgut    107.8 Adult Hindgut    102.2 Adult Malpighian Tubules    95.9 Adult Fat Body    59.2 Adult Salivary Gland    182.2 Adult Heart    62.05 Adult VirginFemale Spermatheca    110.3 Adult InseminatedFemale Spermatheca    117.2 Adult Ovary    224.5 Adult Testis    84.8 Adult Male Accessory Gland    175.7 Adult Carcass    78.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    245.25 Larval Midgut    76.1 Larval Hindgut    119.5 Larval Malpighian Tubules    118.5 Larval Fat Body    91.1 Larval Salivary Gland    202.4 Larval Trachea    156.55 Larval Carcass    145.175 Adult Head    99.6 Adult Eye    73.2 Adult Brain    134.6 Adult Thoracic-Abdominal Ganglion    129.3 Adult Crop    110 Adult Midgut    107.8 Adult Hindgut    102.2 Adult Malpighian Tubules    95.9 Adult Fat Body    59.2 Adult Salivary Gland    182.2 Adult Heart    62.05 Adult VirginFemale Spermatheca    110.3 Adult InseminatedFemale Spermatheca    117.2 Adult Ovary    224.5 Adult Testis    84.8 Adult Male Accessory Gland    175.7 Adult Carcass    78.8 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    99.6   NA  Eye    73.2   NA  Brain    134.6   245.25  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    129.3   NA  Crop    110   76.1  Midgut    107.8   119.5  Hindgut    102.2   118.5  Malpighian Tubules    95.9   91.1  Fat Body    59.2   202.4  Salivary Gland    182.2   NA  Heart    62.05   156.55  Trachea    NA   NA  VirginFemale Spermatheca    110.3   NA  InseminatedFemale Spermatheca    117.2   NA  Ovary    224.5   NA  Testis    84.8   NA  Male Accessory Gland    175.7   145.175  Carcass    78.8 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_17
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037657 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG11990-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for hyx Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele cell lethal | somatic clone hyx1 hyx2 lethal, with Scer\GAL4pnr-MD237 hyxGD12640 lethal | embryonic stage hyx1 hyx2 lethal | first instar larval stage hyxEY06898 lethal | pharate adult stage, with Scer\GAL4Act5C.PI hyxEY06898 Phenotype manifest in Allele eye | somatic clone hyxEY06898 hyx2 leg, with Scer\GAL4Act5C.PI hyxEY06898 leg | somatic clone hyxEY06898 hyx2 macrochaeta | somatic clone hyxEY06898 hyx2 wing margin | somatic clone hyxEY06898 hyx2 wing vein | somatic clone hyxEY06898 hyx2
Classical Alleles ( 6 )
For All Classical Alleles Show
Allele of hyx Class Mutagen Stocks Known lesion hyxEY06898 hypomorphic allele - genetic evidence P-element activity 1 Yes hyxNP0125 1 -- hyx1 ethyl methanesulfonate 0 Yes hyx2 ethyl methanesulfonate 0 Yes hyxEP10 P-element activity 0 -- hyxEP9 P-element activity 0 --
Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Allele of hyx Class Mutagen Stocks Known lesion hyxGD12640 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes hyxGL00123 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes hyxHM04031 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes hyxKK101075 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes hyxScer\UAS.cMa in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6258 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD12640} NA P{KK101075} NA P{TRiP.GL00123} NA P{TRiP.HM04031} NA P{UAS-hyx.M} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}hyxEP9 NA P{EP}hyxEP10 NA P{EP}neurEP643 NA P{EPgy2}hyxEY06898 NA insertion of enhancer trap binary system P{GawB}hyxNP0125 No
Gene Ontology: Function, Process & Cellular Component ( 11 unique terms )
Terms Based on Experimental Evidence ( 11 terms )
Molecular Function
CV term Evidence References
transcription factor binding inferred from physical interaction with ci (Mosimann et al., 2009)
Biological Process
CV term Evidence References
chaeta morphogenesis inferred from mutant phenotype (Mosimann et al., 2006) compound eye morphogenesis inferred from mutant phenotype (Mosimann et al., 2006) imaginal disc-derived leg morphogenesis inferred from mutant phenotype (Mosimann et al., 2006) imaginal disc-derived wing margin morphogenesis inferred from mutant phenotype (Mosimann et al., 2006) imaginal disc-derived wing vein morphogenesis inferred from mutant phenotype (Mosimann et al., 2006) positive regulation of smoothened signaling pathway inferred from genetic interaction with ci (Mosimann et al., 2009) inferred from genetic interaction with ptc (Mosimann et al., 2009) inferred from mutant phenotype (Mosimann et al., 2009) positive regulation of transcription, DNA-dependent inferred from mutant phenotype (Mosimann et al., 2009) Wnt receptor signaling pathway inferred from mutant phenotype (Mosimann et al., 2006)
Cellular Component
CV term Evidence References
Cdc73/Paf1 complex inferred from direct assay (Adelman et al., 2006) protein complex inferred from physical interaction with ci (Mosimann et al., 2009)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions hyx allele Gene References unspecified lgs (Mosimann et al., 2006)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 66254 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0037657 DroID - A comprehensive database of gene and protein interactions. • FBgn0037657 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41086
Orthologs
Genome-wide drosophilid orthologs	Dana\GF16578 Dere\GG14760 Dgri\GH19383 Dmoj\GI22586 Dper\GL12117 Dpse\GA11316 Dsec\GM23781 Dsim\GD18591 Dvir\GJ10306 Dwil\GK11679 Dyak\GE25925
Curated drosophilid orthologs	Dpse\GA11316
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL003528-PA Aedes aegypti (mosquito) AGAP008885-PA Anopheles gambiae (mosquito) XP_395835.2 Apis mellifera (honey bee) XP_001951247.1 Acyrthosiphon pisum (pea aphid) At3g22590.1 Arabidopsis thaliana (wall cress) 35087 Batrachochytrium dendrobatidis (chytrid fungus) 113833 Branchiostoma floridae (lancelet) XP_001895980.1 Brugia malayi (roundworm nematode) BGIBMGA007821-PA Bombyx mori (silk worm) ENSBTAP00000022205 Bos taurus (bovine) CAL0006129 Candida albicans (a form of yeast) CN27569 Caenorhabditis brenneri (small nematode) CBP26304 Caenorhabditis briggsae (nematode) CE37230 Caenorhabditis elegans (worm) ENSCAFP00000015498 Canis familiaris (dog) CAGL0J04510g Candida glabrata (haploid yeast) CMJ135C Cyanidioschyzon merolae (red alga) cn05262 Cryptococcus neoformans (yeast-like fungus) CPIJ010914 Culex pipens (mosquito) ENSCPOP00000003909 Cavia porcellus (guinea pig) 141843 Chlamidomonas reinhardtii (green alga) RP27156 Caenorhabditis remanei (nematode) ENSCSAVP00000017274 Ciona savignyi (sedentary tunicate) 183964 Capitella spl (polychaete worm) DDB0267069 Dictyostelium discoideum (amoeba) DEHA2D08184g Debaryomyces Hansenii (yeast) 57230 Daphnia pulex (daphnia) ENSDARP00000017639 Danio rerio (zebra fish) ENSECAP00000013089 Equus caballus (horse) ENSGACP00000021252 Gymnopilus aculeatus (mushroom) ENSGALP00000003888 Gallus gallus (chicken) 102643 Hypsipyla robusta (cedar shoot borer) ENSP00000356405 Homo sapiens (human) ISCW008023-PA Ixodes scapularis (deer tick) KLLA0D03036g Kluyveromyces lactis (yeast) 186348 Lottia gigantea (owl limpet) ENSMODP00000015307 Monodelphis domestica (gray opossum) ENSMMUP00000037970 Macaca mulatta (rhesus monkey) ENSMUSP00000018337 Mus musculus (house mouse) 121507 Nematostella vectensis (starlet anemone) XP_001600366.1 Nasonia vitripennis (wasp) 24226 Ostreococcus tauri (green alga) PHUM002192-PA Pediculus humanus (human body louse) PP02413 Pristionchus pacificus (nematode) ENSPPYP00000000447 Pongo pygmaeus (orangutan) 136341 Phytophthora sojae (root rot pathogen) 769296 Populus trichocarpa (black cottonwood) ENSPTRP00000002998 Pan troglodytes (chimpanzee) ENSRNOP00000004495 Rattus norvegicus (norway rat) 141542 Sorghum bicolor (sorghum) Smp_144090.2 Schistosoma mansoni (trematode parasite) SPBC17G9.02c Schizosaccharomyces pombe (fission yeast) XP_001192448.1 Strongylocentrotus purpuratus (purple sea urchin) 53180 Trichoplax adhaerens (metazoa) XP_001810768.1 Tribolium castaneum (red flour beetle) ENSTNIP00000010623 Tetraodon nigroviridis (green spotted pufferfish) TP04_0302 Theileria parva (parasitic protozoan) 2703 Thalassiosira pseudonana (marine diatom) ENSTRUP00000023534 Takifugu rubripes (pufferfish Takifugu) 3672.m00031 Tetrahymena thermophila (ciliate protozoa) ENSXETP00000009839 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB18124 NV17052 LH13459 ISCW008023 FBgn0242974 FBgn0213690 FBgn0197592 FBgn0190113 FBgn0178646 JGI_V11_57230 JGI_V11_251937 FBgn0071370 FBgn0149725 FBgn0145314 FBgn0126848 FBgn0107016 FBgn0093599 CPIJ010914 BGIBMGA007821 ACYPI002484 GB16148 AGAP008885 AAEL003528 PHUM356390 GLEAN_11263
Stocks & Reagents
Stocks Listed in FlyBase ( 7 )
Bloomington	31722 y1 v1; P{TRiP.HM04031}attP2 35238 y1 sc* v1; P{TRiP.GL00123}attP2 16768 y1 w67c23; P{EPgy2}hyxEY06898/TM3, Sb1 Ser1
Kyoto	103533 y* w*; P{GawB}hyxNP0125 / TM6, P{UAS-lacZ.UW23-1}UW23-1
VDRC	v103555 P{KK101075}VIE-260B v28318 w1118; P{GD12640}v28318 v28317 w1118; P{GD12640}v28317/CyO
Genomic Clones ( 1 )
	BACR09F04 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 40 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD47989
Other clones	DPiM_LD47989
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GM22517 LD02894 LD04570 LD21646 LD31292 LD31379 LD36807 LD37015 LD42413 LD47747 RE26076 RE32957 RE60982 RH58945 RH69943
Other clones	65349 CK00528 Dmel_neb_015467_0682_2852 EK027958 EK122421 EK142133 EK177741 EK188751 EK198612 EK206457 EK252519 EK304131 IP11916 LD42563 RP001005959 RP001019268 RP001019270 RP001019690 RP001023003 RP001024319 RP001026709 RP001033759 RP001041727
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0037657 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41086
Antibody Information
	polyclonal (Adelman et al., 2006)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: hyx CG11990 (Mosimann et al., 2005.11.27)
Source for database merge of
Additional comments
Other Comments
	dsRNA made from templates generated with primers directed against this gene. (Mosimann et al., 2006)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141606 NM_001170093 RefSeq (Proteins) • NP_649863 NP_001163564 DDBJ / EMBL / GenBank • AAF54331 AAL29073 ABD58935 ACZ94861 AI546421 AW943939 AY061525 CL527955 CS419449 DQ305403 Entrez Gene - A searchable database of RefSeq genes. • 41086 UniProtKB/TrEMBL • Q9VHI1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • RNA polymerase II accessory factor, Cdc73 (IPR007852)
Linkouts
	BioGRID - A database of protein and genetic interactions • 66254 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0037657 DroID - A comprehensive database of gene and protein interactions. • FBgn0037657 DRSC - Results from RNAi screens. • FBgn0037657 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037657 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG11990-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0037657 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41086 InParanoid A subset of ortholog calls from InParanoid. • AAEL003528-PA Aedes aegypti (mosquito) AGAP008885-PA Anopheles gambiae (mosquito) XP_395835.2 Apis mellifera (honey bee) XP_001951247.1 Acyrthosiphon pisum (pea aphid) At3g22590.1 Arabidopsis thaliana (wall cress) 35087 Batrachochytrium dendrobatidis (chytrid fungus) 113833 Branchiostoma floridae (lancelet) XP_001895980.1 Brugia malayi (roundworm nematode) BGIBMGA007821-PA Bombyx mori (silk worm) ENSBTAP00000022205 Bos taurus (bovine) CAL0006129 Candida albicans (a form of yeast) CN27569 Caenorhabditis brenneri (small nematode) CBP26304 Caenorhabditis briggsae (nematode) CE37230 Caenorhabditis elegans (worm) ENSCAFP00000015498 Canis familiaris (dog) CAGL0J04510g Candida glabrata (haploid yeast) CMJ135C Cyanidioschyzon merolae (red alga) cn05262 Cryptococcus neoformans (yeast-like fungus) CPIJ010914 Culex pipens (mosquito) ENSCPOP00000003909 Cavia porcellus (guinea pig) 141843 Chlamidomonas reinhardtii (green alga) RP27156 Caenorhabditis remanei (nematode) ENSCSAVP00000017274 Ciona savignyi (sedentary tunicate) 183964 Capitella spl (polychaete worm) DDB0267069 Dictyostelium discoideum (amoeba) DEHA2D08184g Debaryomyces Hansenii (yeast) 57230 Daphnia pulex (daphnia) ENSDARP00000017639 Danio rerio (zebra fish) ENSECAP00000013089 Equus caballus (horse) ENSGACP00000021252 Gymnopilus aculeatus (mushroom) ENSGALP00000003888 Gallus gallus (chicken) 102643 Hypsipyla robusta (cedar shoot borer) ENSP00000356405 Homo sapiens (human) ISCW008023-PA Ixodes scapularis (deer tick) KLLA0D03036g Kluyveromyces lactis (yeast) 186348 Lottia gigantea (owl limpet) ENSMODP00000015307 Monodelphis domestica (gray opossum) ENSMMUP00000037970 Macaca mulatta (rhesus monkey) ENSMUSP00000018337 Mus musculus (house mouse) 121507 Nematostella vectensis (starlet anemone) XP_001600366.1 Nasonia vitripennis (wasp) 24226 Ostreococcus tauri (green alga) PHUM002192-PA Pediculus humanus (human body louse) PP02413 Pristionchus pacificus (nematode) ENSPPYP00000000447 Pongo pygmaeus (orangutan) 136341 Phytophthora sojae (root rot pathogen) 769296 Populus trichocarpa (black cottonwood) ENSPTRP00000002998 Pan troglodytes (chimpanzee) ENSRNOP00000004495 Rattus norvegicus (norway rat) 141542 Sorghum bicolor (sorghum) Smp_144090.2 Schistosoma mansoni (trematode parasite) SPBC17G9.02c Schizosaccharomyces pombe (fission yeast) XP_001192448.1 Strongylocentrotus purpuratus (purple sea urchin) 53180 Trichoplax adhaerens (metazoa) XP_001810768.1 Tribolium castaneum (red flour beetle) ENSTNIP00000010623 Tetraodon nigroviridis (green spotted pufferfish) TP04_0302 Theileria parva (parasitic protozoan) 2703 Thalassiosira pseudonana (marine diatom) ENSTRUP00000023534 Takifugu rubripes (pufferfish Takifugu) 3672.m00031 Tetrahymena thermophila (ciliate protozoa) ENSXETP00000009839 Xenopus tropicalis (frog) Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution • /genebrief/hyrax.htm InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41086 modMine - Data generated by the modENCODE project. • FBgn0037657 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB18124 NV17052 LH13459 ISCW008023 FBgn0242974 FBgn0213690 FBgn0197592 FBgn0190113 FBgn0178646 JGI_V11_57230 JGI_V11_251937 FBgn0071370 FBgn0149725 FBgn0145314 FBgn0126848 FBgn0107016 FBgn0093599 CPIJ010914 BGIBMGA007821 ACYPI002484 GB16148 AGAP008885 AAEL003528 PHUM356390 GLEAN_11263
Synonyms & Secondary IDs ( 7 )
Reported As
Symbol Synonym	Cdc73 (Adelman et al., 2006) CG11990 (Foley and O'Farrell, 2004, Herr and Harris, 2004, Giot et al., 2003, Mosimann et al., 2006, Wu et al., 2007, Keleman et al., 2009.8.5, Ni et al., 2008, Adelman et al., 2006, Ni et al., 2011.7.19) hyx (Mosimann et al., 2009, Mosimann et al., 2006, Weiler, 2007, Goetze et al., 2009) Hyx (Tountas and Fortini, 2007, Avet-Rochex et al., 2010)
Name Synonym	Hyrax (Mosimann et al., 2009, Stadeli, 2006, He and Axelrod, 2006, Tountas and Fortini, 2007) hyrax (Goetze et al., 2009) Parafibromin (Mosimann et al., 2009)
Secondary FlyBase IDs
References ( 26 )
Generate a list of	All references relating to this gene ( 26 )
List References by type	Research paper  ( 11 ) Supplementary material  ( 3 ) Review  ( 1 ) Personal communication to FlyBase  ( 4 ) FlyBase analysis  ( 2 ) Meeting report  ( 1 ) Conference report  ( 1 ) DNA/RNA sequence record  ( 1 ) Computer file  ( 2 )
Recent research papers ( 2 )
	Avet-Rochex et al., 2010, BMC Dev. Biol. 10: 65 An in vivo RNA interference screen identifies gene networks controlling Drosophila melanogaster blood cell homeostasis. [FBrf0211137] Zhang et al., 2010, Cell Death Differ. 17(10): 1551--1565 Cytoplasmic polyadenylation element binding protein is a conserved target of tumor suppressor HRPT2/CDC73. [FBrf0211791] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2010 Show reviews ...