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Gene Dmel\mura

General Information
Symbol	Dmel\mura	Species	D. melanogaster
Name	murashka	Annotation symbol	CG9381
Feature type	protein_coding_gene	FlyBase ID	FBgn0037705
Gene Model Status	Current	Stock availability	15 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	85D22-85D24	Sequence location	3R:5,361,347..5,377,528 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene murashka is referred to in FlyBase by the symbol Dmel\mura (CG9381, FBgn0037705). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: zinc ion binding. There is experimental evidence that it is involved in the biological process: olfactory learning; learning or memory; long-term memory; regulation of response to DNA damage stimulus; behavioral response to ethanol. 24 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Zinc finger, RING-type; Zinc finger, RING/FYVE/PHD-type. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 06-24 hour embryonic stages, during late larval stages, at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult crop, larval midgut, larval Malpighian tubules, adult heart, larval trachea, adult spermathecae. Comments on Affy2 ProbeSet: ProbeSet 1633534_s_at partially aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of mura: 11 out of 14 probes fall into this exonic region. Gene sequence location is 3R:5361347..5377528.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03	Alleles mura[MI05407]
FB2013_02	Controlled Vocabulary Terms behavioral response to ethanol
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 85D22-85D24   Limits computationally determined from genome sequence between P{PZ}ps10615&P{PZ}Ras85D06677 and P{EP}CG9393EP3122
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\mura for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47 Tissue-specific extension of 3' UTRs observed during later stages (FBrf0218523, FBrf0219848); all variants may not be annotated DGC clone LD20464 appears problematic: unspliced intron Shares 5' UTR with upstream (non-coding) gene.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) mura-RA FBtr0082116  NM_141645   6303   868 mura-RB FBtr0082117  NM_169291   3807   868 mura-RC FBtr0082118  NM_169292   4671   1173
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein mura-PA   FBpp0081594   92.6   868   9.48     NP_649902   AAN13432 mura-PB   FBpp0081595   92.6   868   9.48     NP_731366   AAN13433 mura-PC   FBpp0081596   126.6   1173   9.44     NP_731367   AAF54394
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, RING-type (IPR001841) Zinc finger, RING/FYVE/PHD-type (IPR013083)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA140662   AA540691   AA694846   AA698148   AA950081   AE014297 AAF54394   AE014297 AAN13432   AE014297 AAN13433   AI110109   AI238107   AI294099   AQ025106   AQ025170   AQ025199   AW942568   AW943008   AY061291 AAL28839   AY094811 AAM11164   BH759440   BI167219   BI238769   BI241521   BI356211   BI365290   BI371735   BI372664   BI482583   BI621338   BI626300   BP553890   BT125858   BT132710   BZ748762   CK661699   CK662302   CL610136   CL943508   CO176853   CO178263   CO178456   CO185402   CO185953   CO186505   CO186778   CO186948   CO187052   CO189079   CO196137   CO196308   CO196517   CO263639   CO272459   CO272597   CO272778   CO273924   CO274210   CO274783   CO276882   CO278586   CO281563   CO282234   CO283406   CO284308   CO284325   CO284866   CO284994   CO286841   CO287396   CO289056   CO289507   CO293689   CO296804   CO298897   CO299789   CO300434   CO302044   CO302668   CO302908   CO303756   CO305457   CO309814   CO310850   CO314467   CO314566   CO315007   CO316154   CO317556   CO317667   CO318524   CO321391   CO322739   CO324741   CO327363   CO327451   CO327797   CO330161   CO332087   CO333681   CO337706   CO339478   CO339642   CO340360   CO342101   CO343031   CO344661   CO344811   CO345193   CZ474266   EC056747   EC057901   EC063348   EC068457   EC068714   EC068923   EC069785   EC070816   EC071845   EC071880   EC073468   EC074777   EC077529   EC078326   EC081132   EC085833   EC090777   EC196307   EC198122   EC199569   EC202354   EC204931   EC205003   EC206268   EC206368   EC207107   EC210792   EC211178   EC211826   EC218060   EC220558   EC220724   EC223314   EC223578   EC223673   EC224309   EC227034   EC228719   EC229184   EC229408   EC231316   EC232541   EC233214   EC236651   EC237406   EC237436   EC240227   EC241466   EC243824   EC244579   EC246178   EC248804   EC250552   EC251759   EC253279   EC254784   EC255145   EC257956   EC259517   EC261583   EV577559   GH945908   GH946784   GH959799   GH962674   GH963978   GH969689   GH981847   GH982888
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8SX72 Q9VHC2 Q95RL7
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic/larval midgut   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult crop, larval midgut, larval Malpighian tubules, adult heart, larval trachea, adult spermathecae. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    138.15 Larval Midgut    106.2 Larval Hindgut    91.6 Larval Malpighian Tubules    129.5 Larval Fat Body    86.4 Larval Salivary Gland    33.7 Larval Trachea    342.275 Larval Carcass    65.675 Adult Head    52.7 Adult Eye    272.45 Adult Brain    310.2 Adult Thoracic-Abdominal Ganglion    265.1 Adult Crop    140.9 Adult Midgut    77.9 Adult Hindgut    91.4 Adult Malpighian Tubules    64.6 Adult Fat Body    82.8 Adult Salivary Gland    88 Adult Heart    304.575 Adult VirginFemale Spermatheca    150 Adult InseminatedFemale Spermatheca    144.8 Adult Ovary    56.3 Adult Testis    13.6 Adult Male Accessory Gland    63.6 Adult Carcass    61.8 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    138.15 Larval Midgut    106.2 Larval Hindgut    91.6 Larval Malpighian Tubules    129.5 Larval Fat Body    86.4 Larval Salivary Gland    33.7 Larval Trachea    342.275 Larval Carcass    65.675 Adult Head    52.7 Adult Eye    272.45 Adult Brain    310.2 Adult Thoracic-Abdominal Ganglion    265.1 Adult Crop    140.9 Adult Midgut    77.9 Adult Hindgut    91.4 Adult Malpighian Tubules    64.6 Adult Fat Body    82.8 Adult Salivary Gland    88 Adult Heart    304.575 Adult VirginFemale Spermatheca    150 Adult InseminatedFemale Spermatheca    144.8 Adult Ovary    56.3 Adult Testis    13.6 Adult Male Accessory Gland    63.6 Adult Carcass    61.8 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    138.15 Larval Midgut    106.2 Larval Hindgut    91.6 Larval Malpighian Tubules    129.5 Larval Fat Body    86.4 Larval Salivary Gland    33.7 Larval Trachea    342.275 Larval Carcass    65.675 Adult Head    52.7 Adult Eye    272.45 Adult Brain    310.2 Adult Thoracic-Abdominal Ganglion    265.1 Adult Crop    140.9 Adult Midgut    77.9 Adult Hindgut    91.4 Adult Malpighian Tubules    64.6 Adult Fat Body    82.8 Adult Salivary Gland    88 Adult Heart    304.575 Adult VirginFemale Spermatheca    150 Adult InseminatedFemale Spermatheca    144.8 Adult Ovary    56.3 Adult Testis    13.6 Adult Male Accessory Gland    63.6 Adult Carcass    61.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    138.15 Larval Midgut    106.2 Larval Hindgut    91.6 Larval Malpighian Tubules    129.5 Larval Fat Body    86.4 Larval Salivary Gland    33.7 Larval Trachea    342.275 Larval Carcass    65.675 Adult Head    52.7 Adult Eye    272.45 Adult Brain    310.2 Adult Thoracic-Abdominal Ganglion    265.1 Adult Crop    140.9 Adult Midgut    77.9 Adult Hindgut    91.4 Adult Malpighian Tubules    64.6 Adult Fat Body    82.8 Adult Salivary Gland    88 Adult Heart    304.575 Adult VirginFemale Spermatheca    150 Adult InseminatedFemale Spermatheca    144.8 Adult Ovary    56.3 Adult Testis    13.6 Adult Male Accessory Gland    63.6 Adult Carcass    61.8 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    138.15 Larval Midgut    106.2 Larval Hindgut    91.6 Larval Malpighian Tubules    129.5 Larval Fat Body    86.4 Larval Salivary Gland    33.7 Larval Trachea    342.275 Larval Carcass    65.675 Adult Head    52.7 Adult Eye    272.45 Adult Brain    310.2 Adult Thoracic-Abdominal Ganglion    265.1 Adult Crop    140.9 Adult Midgut    77.9 Adult Hindgut    91.4 Adult Malpighian Tubules    64.6 Adult Fat Body    82.8 Adult Salivary Gland    88 Adult Heart    304.575 Adult VirginFemale Spermatheca    150 Adult InseminatedFemale Spermatheca    144.8 Adult Ovary    56.3 Adult Testis    13.6 Adult Male Accessory Gland    63.6 Adult Carcass    61.8 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    138.15 Larval Midgut    106.2 Larval Hindgut    91.6 Larval Malpighian Tubules    129.5 Larval Fat Body    86.4 Larval Salivary Gland    33.7 Larval Trachea    342.275 Larval Carcass    65.675 Adult Head    52.7 Adult Eye    272.45 Adult Brain    310.2 Adult Thoracic-Abdominal Ganglion    265.1 Adult Crop    140.9 Adult Midgut    77.9 Adult Hindgut    91.4 Adult Malpighian Tubules    64.6 Adult Fat Body    82.8 Adult Salivary Gland    88 Adult Heart    304.575 Adult VirginFemale Spermatheca    150 Adult InseminatedFemale Spermatheca    144.8 Adult Ovary    56.3 Adult Testis    13.6 Adult Male Accessory Gland    63.6 Adult Carcass    61.8 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    138.15 Larval Midgut    106.2 Larval Hindgut    91.6 Larval Malpighian Tubules    129.5 Larval Fat Body    86.4 Larval Salivary Gland    33.7 Larval Trachea    342.275 Larval Carcass    65.675 Adult Head    52.7 Adult Eye    272.45 Adult Brain    310.2 Adult Thoracic-Abdominal Ganglion    265.1 Adult Crop    140.9 Adult Midgut    77.9 Adult Hindgut    91.4 Adult Malpighian Tubules    64.6 Adult Fat Body    82.8 Adult Salivary Gland    88 Adult Heart    304.575 Adult VirginFemale Spermatheca    150 Adult InseminatedFemale Spermatheca    144.8 Adult Ovary    56.3 Adult Testis    13.6 Adult Male Accessory Gland    63.6 Adult Carcass    61.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    138.15 Larval Midgut    106.2 Larval Hindgut    91.6 Larval Malpighian Tubules    129.5 Larval Fat Body    86.4 Larval Salivary Gland    33.7 Larval Trachea    342.275 Larval Carcass    65.675 Adult Head    52.7 Adult Eye    272.45 Adult Brain    310.2 Adult Thoracic-Abdominal Ganglion    265.1 Adult Crop    140.9 Adult Midgut    77.9 Adult Hindgut    91.4 Adult Malpighian Tubules    64.6 Adult Fat Body    82.8 Adult Salivary Gland    88 Adult Heart    304.575 Adult VirginFemale Spermatheca    150 Adult InseminatedFemale Spermatheca    144.8 Adult Ovary    56.3 Adult Testis    13.6 Adult Male Accessory Gland    63.6 Adult Carcass    61.8 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    52.7   NA  Eye    272.45   NA  Brain    310.2   138.15  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    265.1   NA  Crop    140.9   106.2  Midgut    77.9   91.6  Hindgut    91.4   129.5  Malpighian Tubules    64.6   86.4  Fat Body    82.8   33.7  Salivary Gland    88   NA  Heart    304.575   342.275  Trachea    NA   NA  VirginFemale Spermatheca    150   NA  InseminatedFemale Spermatheca    144.8   NA  Ovary    56.3   NA  Testis    13.6   NA  Male Accessory Gland    63.6   65.675  Carcass    61.8 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    59 central nervous system, pupae P8    95 head, virgin 1-day female    45 head, virgin 4-day female    44 head, virgin 20-day female    25 head, mated 1-day female    42 head, mated 4-day female    36 head, mated 20-day female    26 head, mated 1-day male    72 head, mated 4-day male    68 head, mated 20-day male    54 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    42 digestive system, larvae L3 wandering    17 digestive system, 1-day adult    10 digestive system, 4-day adult    14 digestive system, 20-day adult    15 fat body, larvae L3 wandering    12 fat body, white prepupae    20 fat body, pupae P8    22 carcass, larvae L3 wandering    29 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    13 ovary, virgin 4-day female    4 ovary, mated 4-day female    3 testis, mated 4-day male    2 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  26 central nervous system, larvae L3  (59) central nervous system, pupae P8  (95) head, virgin 1-day female  (45) head, virgin 4-day female  (44) head, virgin 20-day female    25 head, mated 1-day female  (42) head, mated 4-day female  (36) head, mated 20-day female  26 head, mated 1-day male  (72) head, mated 4-day male  (68) head, mated 20-day male  (54) salivary gland, larvae L3 wandering    4 salivary gland, white prepupae  (42) digestive system, larvae L3 wandering    17 digestive system, 1-day adult    10 digestive system, 4-day adult    14 digestive system, 20-day adult    15 fat body, larvae L3 wandering    12 fat body, white prepupae    20 fat body, pupae P8    22 carcass, larvae L3 wandering  (29) carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    13 ovary, virgin 4-day female    4 ovary, mated 4-day female    3 testis, mated 4-day male    2 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    59 central nervous system, pupae P8    95 head, virgin 1-day female    45 head, virgin 4-day female    44 head, virgin 20-day female    25 head, mated 1-day female    42 head, mated 4-day female    36 head, mated 20-day female    26 head, mated 1-day male    72 head, mated 4-day male    68 head, mated 20-day male    54 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    42 digestive system, larvae L3 wandering    17 digestive system, 1-day adult    10 digestive system, 4-day adult    14 digestive system, 20-day adult    15 fat body, larvae L3 wandering    12 fat body, white prepupae    20 fat body, pupae P8    22 carcass, larvae L3 wandering    29 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    13 ovary, virgin 4-day female    4 ovary, mated 4-day female    3 testis, mated 4-day male    2 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    59 central nervous system, pupae P8    95 head, virgin 1-day female    45 head, virgin 4-day female    44 head, virgin 20-day female    25 head, mated 1-day female    42 head, mated 4-day female    36 head, mated 20-day female    26 head, mated 1-day male    72 head, mated 4-day male    68 head, mated 20-day male    54 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    42 digestive system, larvae L3 wandering    17 digestive system, 1-day adult    10 digestive system, 4-day adult    14 digestive system, 20-day adult    15 fat body, larvae L3 wandering    12 fat body, white prepupae    20 fat body, pupae P8    22 carcass, larvae L3 wandering    29 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    13 ovary, virgin 4-day female    4 ovary, mated 4-day female    3 testis, mated 4-day male    2 accessory gland, mated 4-day male    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    59 central nervous system, pupae P8    95 head, virgin 1-day female    45 head, virgin 4-day female    44 head, virgin 20-day female    25 head, mated 1-day female    42 head, mated 4-day female    36 head, mated 20-day female    26 head, mated 1-day male    72 head, mated 4-day male    68 head, mated 20-day male    54 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    42 digestive system, larvae L3 wandering    17 digestive system, 1-day adult    10 digestive system, 4-day adult    14 digestive system, 20-day adult    15 fat body, larvae L3 wandering    12 fat body, white prepupae    20 fat body, pupae P8    22 carcass, larvae L3 wandering    29 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    13 ovary, virgin 4-day female    4 ovary, mated 4-day female    3 testis, mated 4-day male    2 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  26 central nervous system, larvae L3  (59) central nervous system, pupae P8  (95) head, virgin 1-day female  (45) head, virgin 4-day female  (44) head, virgin 20-day female    25 head, mated 1-day female  (42) head, mated 4-day female  (36) head, mated 20-day female  26 head, mated 1-day male  (72) head, mated 4-day male  (68) head, mated 20-day male  (54) salivary gland, larvae L3 wandering    4 salivary gland, white prepupae  (42) digestive system, larvae L3 wandering    17 digestive system, 1-day adult    10 digestive system, 4-day adult    14 digestive system, 20-day adult    15 fat body, larvae L3 wandering    12 fat body, white prepupae    20 fat body, pupae P8    22 carcass, larvae L3 wandering  29 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    13 ovary, virgin 4-day female    4 ovary, mated 4-day female    3 testis, mated 4-day male    2 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    59 central nervous system, pupae P8    95 head, virgin 1-day female    45 head, virgin 4-day female    44 head, virgin 20-day female    25 head, mated 1-day female    42 head, mated 4-day female    36 head, mated 20-day female    26 head, mated 1-day male    72 head, mated 4-day male    68 head, mated 20-day male    54 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    42 digestive system, larvae L3 wandering    17 digestive system, 1-day adult    10 digestive system, 4-day adult    14 digestive system, 20-day adult    15 fat body, larvae L3 wandering    12 fat body, white prepupae    20 fat body, pupae P8    22 carcass, larvae L3 wandering    29 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    13 ovary, virgin 4-day female    4 ovary, mated 4-day female    3 testis, mated 4-day male    2 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    59 central nervous system, pupae P8    95 head, virgin 1-day female    45 head, virgin 4-day female    44 head, virgin 20-day female    25 head, mated 1-day female    42 head, mated 4-day female    36 head, mated 20-day female    26 head, mated 1-day male    72 head, mated 4-day male    68 head, mated 20-day male    54 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    42 digestive system, larvae L3 wandering    17 digestive system, 1-day adult    10 digestive system, 4-day adult    14 digestive system, 20-day adult    15 fat body, larvae L3 wandering    12 fat body, white prepupae    20 fat body, pupae P8    22 carcass, larvae L3 wandering    29 carcass, 1-day adult    18 carcass, 4-day adult    16 carcass, 20-day adult    13 ovary, virgin 4-day female    4 ovary, mated 4-day female    3 testis, mated 4-day male    2 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 06-24 hour embryonic stages, during late larval stages, at stages throughout the pupal period. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    9 embryo 02-04hr    10 embryo 04-06hr    13 embryo 06-08hr    19 embryo 08-10hr    18 embryo 10-12hr    13 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    22 embryo 18-20hr    23 embryo 20-22hr    19 embryo 22-24hr    21 larva L1    14 larva L2    5 larva L3 12hr old    5 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    24 white prepupae 12hr    25 white prepupae 24hr    26 pupae 2d postWPP    27 pupae 3d postWPP    18 pupae 4d postWPP    13 adult male 01day    12 adult male 05day    12 adult male 30day    11 adult female 01day    10 adult female 05day    7 adult female 30day    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    9 embryo 02-04hr    10 embryo 04-06hr    13 embryo 06-08hr    19 embryo 08-10hr    18 embryo 10-12hr    13 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    22 embryo 18-20hr    23 embryo 20-22hr    19 embryo 22-24hr    21 larva L1    14 larva L2    5 larva L3 12hr old    5 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    24 white prepupae 12hr    25 white prepupae 24hr  26 pupae 2d postWPP  (27) pupae 3d postWPP    18 pupae 4d postWPP    13 adult male 01day    12 adult male 05day    12 adult male 30day    11 adult female 01day    10 adult female 05day    7 adult female 30day    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    9 embryo 02-04hr    10 embryo 04-06hr    13 embryo 06-08hr    19 embryo 08-10hr    18 embryo 10-12hr    13 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    22 embryo 18-20hr    23 embryo 20-22hr    19 embryo 22-24hr    21 larva L1    14 larva L2    5 larva L3 12hr old    5 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    24 white prepupae 12hr    25 white prepupae 24hr    26 pupae 2d postWPP    27 pupae 3d postWPP    18 pupae 4d postWPP    13 adult male 01day    12 adult male 05day    12 adult male 30day    11 adult female 01day    10 adult female 05day    7 adult female 30day    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    9 embryo 02-04hr    10 embryo 04-06hr    13 embryo 06-08hr    19 embryo 08-10hr    18 embryo 10-12hr    13 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    22 embryo 18-20hr    23 embryo 20-22hr    19 embryo 22-24hr    21 larva L1    14 larva L2    5 larva L3 12hr old    5 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    24 white prepupae 12hr    25 white prepupae 24hr    26 pupae 2d postWPP    27 pupae 3d postWPP    18 pupae 4d postWPP    13 adult male 01day    12 adult male 05day    12 adult male 30day    11 adult female 01day    10 adult female 05day    7 adult female 30day    8 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    9 embryo 02-04hr    10 embryo 04-06hr    13 embryo 06-08hr    19 embryo 08-10hr    18 embryo 10-12hr    13 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    22 embryo 18-20hr    23 embryo 20-22hr    19 embryo 22-24hr    21 larva L1    14 larva L2    5 larva L3 12hr old    5 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    24 white prepupae 12hr    25 white prepupae 24hr    26 pupae 2d postWPP    27 pupae 3d postWPP    18 pupae 4d postWPP    13 adult male 01day    12 adult male 05day    12 adult male 30day    11 adult female 01day    10 adult female 05day    7 adult female 30day    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    9 embryo 02-04hr    10 embryo 04-06hr    13 embryo 06-08hr    19 embryo 08-10hr    18 embryo 10-12hr    13 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    22 embryo 18-20hr    23 embryo 20-22hr    19 embryo 22-24hr    21 larva L1    14 larva L2    5 larva L3 12hr old    5 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    24 white prepupae 12hr    25 white prepupae 24hr  26 pupae 2d postWPP  27 pupae 3d postWPP    18 pupae 4d postWPP    13 adult male 01day    12 adult male 05day    12 adult male 30day    11 adult female 01day    10 adult female 05day    7 adult female 30day    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    9 embryo 02-04hr    10 embryo 04-06hr    13 embryo 06-08hr    19 embryo 08-10hr    18 embryo 10-12hr    13 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    22 embryo 18-20hr    23 embryo 20-22hr    19 embryo 22-24hr    21 larva L1    14 larva L2    5 larva L3 12hr old    5 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    24 white prepupae 12hr    25 white prepupae 24hr    26 pupae 2d postWPP    27 pupae 3d postWPP    18 pupae 4d postWPP    13 adult male 01day    12 adult male 05day    12 adult male 30day    11 adult female 01day    10 adult female 05day    7 adult female 30day    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    9 embryo 02-04hr    10 embryo 04-06hr    13 embryo 06-08hr    19 embryo 08-10hr    18 embryo 10-12hr    13 embryo 12-14hr    18 embryo 14-16hr    17 embryo 16-18hr    22 embryo 18-20hr    23 embryo 20-22hr    19 embryo 22-24hr    21 larva L1    14 larva L2    5 larva L3 12hr old    5 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    15 larva L3 puffstage 7-9    19 white prepupae new    24 white prepupae 12hr    25 white prepupae 24hr    26 pupae 2d postWPP    27 pupae 3d postWPP    18 pupae 4d postWPP    13 adult male 01day    12 adult male 05day    12 adult male 30day    11 adult female 01day    10 adult female 05day    7 adult female 30day    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    16 Schneider line 2 Sg4    11 embryonic 1182-4H    12 embryonic GM2    35 embryonic Kc167    8 embryonic S1    6 embryonic S3    12 leg disc CME L1    12 wing disc CME-W2    15 wing disc ML-DmD8    18 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    8 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3    34 eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    3 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    5 tumorous blood cells mbn2    14 ovary fGS/OSS    28 ovary OSC    18 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    16 Schneider line 2 Sg4    11 embryonic 1182-4H    12 embryonic GM2  (35) embryonic Kc167    8 embryonic S1    6 embryonic S3    12 leg disc CME L1    12 wing disc CME-W2    15 wing disc ML-DmD8    18 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    8 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3  (34) eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    3 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    5 tumorous blood cells mbn2    14 ovary fGS/OSS  (28) ovary OSC    18 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    16 Schneider line 2 Sg4    11 embryonic 1182-4H    12 embryonic GM2    35 embryonic Kc167    8 embryonic S1    6 embryonic S3    12 leg disc CME L1    12 wing disc CME-W2    15 wing disc ML-DmD8    18 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    8 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3    34 eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    3 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    5 tumorous blood cells mbn2    14 ovary fGS/OSS    28 ovary OSC    18 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    16 Schneider line 2 Sg4    11 embryonic 1182-4H    12 embryonic GM2    35 embryonic Kc167    8 embryonic S1    6 embryonic S3    12 leg disc CME L1    12 wing disc CME-W2    15 wing disc ML-DmD8    18 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    8 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3    34 eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    3 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    5 tumorous blood cells mbn2    14 ovary fGS/OSS    28 ovary OSC    18 ovary OSS    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    16 Schneider line 2 Sg4    11 embryonic 1182-4H    12 embryonic GM2    35 embryonic Kc167    8 embryonic S1    6 embryonic S3    12 leg disc CME L1    12 wing disc CME-W2    15 wing disc ML-DmD8    18 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    8 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3    34 eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    3 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    5 tumorous blood cells mbn2    14 ovary fGS/OSS    28 ovary OSC    18 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    16 Schneider line 2 Sg4    11 embryonic 1182-4H    12 embryonic GM2  (35) embryonic Kc167    8 embryonic S1    6 embryonic S3    12 leg disc CME L1    12 wing disc CME-W2    15 wing disc ML-DmD8    18 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    8 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3  (34) eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    3 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    5 tumorous blood cells mbn2    14 ovary fGS/OSS  28 ovary OSC    18 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    16 Schneider line 2 Sg4    11 embryonic 1182-4H    12 embryonic GM2    35 embryonic Kc167    8 embryonic S1    6 embryonic S3    12 leg disc CME L1    12 wing disc CME-W2    15 wing disc ML-DmD8    18 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    8 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3    34 eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    3 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    5 tumorous blood cells mbn2    14 ovary fGS/OSS    28 ovary OSC    18 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    16 Schneider line 2 Sg4    11 embryonic 1182-4H    12 embryonic GM2    35 embryonic Kc167    8 embryonic S1    6 embryonic S3    12 leg disc CME L1    12 wing disc CME-W2    15 wing disc ML-DmD8    18 wing disc ML-DmD9    16 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    8 wing disc ML-DmD32    24 haltere disc ML-DmD17-c3    34 eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    3 mixed discs ML-DmD4-c1    9 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    5 tumorous blood cells mbn2    14 ovary fGS/OSS    28 ovary OSC    18 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    15 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    13 Caffeine 25 mg/ml 48 hrs, 4-day adult    18 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    18 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    15 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    13 Caffeine 25 mg/ml 48 hrs, 4-day adult    18 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    18 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    15 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    13 Caffeine 25 mg/ml 48 hrs, 4-day adult    18 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    18 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    15 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    13 Caffeine 25 mg/ml 48 hrs, 4-day adult    18 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    18 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    15 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    13 Caffeine 25 mg/ml 48 hrs, 4-day adult    18 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    18 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    15 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    13 Caffeine 25 mg/ml 48 hrs, 4-day adult    18 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    18 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    15 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    13 Caffeine 25 mg/ml 48 hrs, 4-day adult    18 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    18 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    15 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    7 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    13 Caffeine 25 mg/ml 48 hrs, 4-day adult    18 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    18 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_27 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • GH10160 LD30050 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037705 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • LD20464;CG9381-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable muraEY03448 muraEY11688 muraEY15210 viable, with Scer\GAL4pnr-MD237 muraGD14204 Sterility Allele fertile muraEY03448 muraEY11688 muraEY15210 Other Phenotypes Allele chemical resistant mura2 learning defective mura1 mura2 memory defective mura1 mura2 Phenotype manifest in Allele
Classical Alleles ( 23 )
For All Classical Alleles Show
Allele of mura Class Mutagen Stocks Known lesion muraCB-5386-3 1 -- muraCB-6158-3 1 -- muraCB-6535-3 1 -- murad03026 1 -- murad05381 1 -- muraEY00506 P-element activity 1 -- muraEY11688 P-element activity 1 -- muraEY15210 P-element activity 1 -- muraGS7244 1 Yes muraKG04118 P-element activity 1 -- muraMI00716 1 -- muraMI05407 1 -- muraNP3024 1 -- muraNP5945 1 -- mura1 P-element activity 0 -- mura2 P-element activity 0 -- murad05019 P-element activity 0 -- muraDG19801 P-element activity 0 -- muraEP1082 P-element activity 0 Yes muraEP1202 P-element activity 0 -- muraEP527 P-element activity 0 -- muraEY03448 P-element activity 0 -- muraGS5193 0 Yes
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of mura Class Mutagen Stocks Known lesion muraGL00121 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes muraGD14204 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6153 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD14204} NA P{TRiP.GL00121} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}muraEP527 NA P{EP}muraEP1202 NA P{EP}RnpS1EP1082 NA P{EPgy2}muraEY00506 NA P{EPgy2}muraEY03448 NA P{EPgy2}muraEY11688 NA P{EPgy2}muraEY15210 NA P{GSV1}EP-643EP-643 NA P{GSV2}muraGS5193 NA P{GSV2}muraGS7244 NA P{XP}murad03026 NA P{XP}murad05019 NA P{XP}murad05381 NA P{XP}murad09105 NA miscellaneous insertions Mi{MIC}muraMI00716 NA Mi{MIC}muraMI05407 NA P{RS3}muraCB-5386-3 NA P{RS3}muraCB-6158-3 NA P{RS3}muraCB-6535-3 NA P{SUPor-P}muraKG04118 NA P{wHy}muraDG19801 NA insertion of enhancer trap binary system P{GAL4}mura1 No P{GAL4}mura2 No P{GawB}muraNP3024 No P{GawB}muraNP5945 No
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
	There is no information supporting a cellular component term for this gene. (Based on a review of available data before: 2006)
Terms Based on Experimental Evidence ( 5 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
behavioral response to ethanol inferred from mutant phenotype (Berger et al., 2008) learning or memory inferred from mutant phenotype (Dubnau et al., 2003) long-term memory inferred from mutant phenotype (Akalal et al., 2011) olfactory learning inferred from mutant phenotype (Dubnau et al., 2003) regulation of response to DNA damage stimulus inferred from genetic interaction with lok (Park and Song, 2008)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
zinc ion binding inferred from electronic annotation with InterPro:IPR001841 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions mura allele Gene References unspecified pbl (Gregory et al., 2007)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 66305 DroID - A comprehensive database of gene and protein interactions. • FBgn0037705 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41145
Orthologs
OrthoDB Orthologs (9) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG63N7ZT Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG63N7ZT)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\mura     Drosophila simulans   Dsim\GD20788 Y   Drosophila sechellia   Dsec\GM26248 Y   Drosophila erecta   Dere\GG17363 Y   Drosophila yakuba   Dyak\GE24768 Y   Drosophila ananassae   Dana\GF16054 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA26288 Y   Drosophila persimilis   Dper\GL21484 Y   Drosophila willistoni   Dwil\GK11818 Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD20788 Drosophila sechellia Dsec\GM26248 Drosophila erecta Dere\GG17363 Drosophila yakuba Dyak\GE24768 Drosophila ananassae Dana\GF16054 Drosophila pseudoobscura pseudoobscura Dpse\GA26288 Drosophila persimilis Dper\GL21484 Drosophila willistoni Dwil\GK11818 Drosophila virilis Dvir\GJ10273 Drosophila mojavensis Dmoj\GI23522 Drosophila grimshawi Dgri\GH19305
Stocks & Reagents
Stocks Listed in FlyBase ( 15 )
Bloomington	33077 y1 w*; Mi{MIC}muraMI00716 43873 y1 w*; Mi{MIC}muraMI05407 15290 y1 w67c23; P{EPgy2}muraEY00506 35236 y1 sc* v1; P{TRiP.GL00121}attP2 20815 y1 w67c23; P{EPgy2}muraEY11688 CR42549EY11688 21120 y1 w67c23; P{EPgy2}muraEY15210 CR42549EY15210
Harvard	- P{XP}murad03026 - P{XP}murad05381
Kyoto	113066 w*; P{GawB}muraNP3024 123598 w1118; P{RS3}muraCB-5386-3 123952 w1118; P{RS3}muraCB-6158-3 124145 w1118; P{RS3}muraCB-6535-3
	More stocks available...
Genomic Clones ( 2 )
	BACR19J06 BACR19N07 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 101 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH10160 LD30050
Other clones	MIP32849
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH09572 GH14104 GM01659 HL03849 LP07401 LP21359 LP22393 RE07555 RE38611 RE41835 RE42308 RE50552 RE58688 RE59681 RE65289 RH52663 RH66872
Other clones	CK00364 Dmel_dig_005937_0692_3582 EK001107 EK002945 EK005316 EK009134 EK014658 EK020343 EK023026 EK024921 EK025918 EK042942 EK051357 EK056249 EK056737 EK064034 EK065741 EK070008 EK071213 EK089131 EK107240 EK107755 EK108355 EK112644 EK113545 EK115505 EK122310 EK130509 EK157446 EK159858 EK163053 EK165734 EK165806 EK167122 EK167827 EK174051 EK176534 EK178204 EK182942 EK184650 EK185133 EK185605 EK188756 EK194707 EK204130 EK215209 EK219408 EK222820 EK236558 EK237031 EK238746 EK242707 EK248709 EK263809 EK268504 EK268735 EK272614 EK294633 EK302501 EK307657 EN15129 EP02107 EP02435 EP06841 EP07139 EP08043 EP10505 EP13834 EP15954 EP19701 EP19934 EP21603 FGM226H01 RP004215691 RP004217045 RP004223865 RP004227728 RP004437952 RP004509276 RP004523888 RP004552942
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0037705 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41145
Antibody Information
Other Information
Discoverer
Etymology
	Given the name "murashka", after one of Pavlov's dogs. (Dubnau et al., 2003)
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG9381 CG9382 (Whitfield, 2000.12.15)
Additional comments
Other Comments
	RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141645 NM_169291 NM_169292 RefSeq (Proteins) • NP_649902 NP_731366 NP_731367 DDBJ / EMBL / GenBank • AA540691 AA950081 AAF54394 AAL28839 AAM11164 AAN13432 AAN13433 AQ025106 AQ025170 AQ025199 AW942568 AW943008 AY061291 AY094811 BH759440 BZ748762 CL610136 CL943508 CZ474266 Entrez Gene - A searchable database of RefSeq genes. • 41145 UniProtKB/TrEMBL • Q8SX72 Q9VHC2 Q95RL7
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, RING-type (IPR001841) Zinc finger, RING/FYVE/PHD-type (IPR013083) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GH10160 LD30050
Linkouts
	BioGRID - A database of protein and genetic interactions • 66305 DroID - A comprehensive database of gene and protein interactions. • FBgn0037705 DRSC - Results from RNAi screens. • FBgn0037705 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037705 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • LD20464;CG9381-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0037705 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41145 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41145 modMine - Data generated by the modENCODE project. • FBgn0037705
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	CG9381 (Mutsuddi et al., 2004, Boutros et al., 2004, Dubnau et al., 2003, Labourier et al., 2002, Giot et al., 2003, Quinones-Coello, 2007, Molnar et al., 2006, Ni et al., 2011.7.19, Ying et al., 2011, Berger et al., 2008) CG9382   mura (Quinones-Coello, 2007, Arancio et al., 2010, Molnar et al., 2006) Mura (Ying et al., 2011)
Name Synonym	murashka (Tully and Dubnau, 2003, Dubnau et al., 2003, Gregory et al., 2007, Dubnau et al., 2003, Berger et al., 2008, Park and Song, 2008) Murashka (Ganguly-Fitzgerald et al., 2006, Mastushita-Sakai et al., 2010)
Secondary FlyBase IDs
	FBgn0037706
References ( 40 )
Generate a list of	All references relating to this gene ( 40 )
List References by type	Research paper  ( 13 ) Supplementary material  ( 8 ) Review  ( 2 ) Personal communication to FlyBase  ( 12 ) FlyBase analysis  ( 4 ) Website  ( 1 )
Recent research papers ( 2 )
	Akalal et al., 2011, J. Neurosci. 31(15): 5643--5647 The Long-Term Memory Trace Formed in the Drosophila {alpha}/{beta} Mushroom Body Neurons Is Abolished in Long-Term Memory Mutants. [FBrf0213484] Ying et al., 2011, PLoS ONE 6(9): e23863 Comprehensively Surveying Structure and Function of RING Domains from Drosophila melanogaster. [FBrf0215242] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...